AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039380 MtrunA17_Chr7g0272611 97.122 139 1 1 1 136 1 139 8.22e-94 267
Msa1039380 MtrunA17_Chr2g0327951 82.203 118 21 0 20 137 56 173 1.22e-67 202
Msa1039380 MtrunA17_Chr4g0031041 85.455 110 16 0 20 129 15 124 5.56e-66 197
Msa1039380 MtrunA17_Chr2g0327931 74.638 138 35 0 1 138 1 138 1.08e-64 194
Msa1039380 MtrunA17_Chr4g0031001 77.206 136 28 1 3 138 4 136 1.18e-64 193
Msa1039380 MtrunA17_Chr4g0031651 79.528 127 26 0 3 129 4 130 2.28e-64 192
Msa1039380 MtrunA17_Chr4g0035621 78.462 130 27 1 1 129 1 130 1.15e-63 191
Msa1039380 MtrunA17_Chr8g0379311 81.034 116 19 1 23 138 24 136 1.76e-63 191
Msa1039380 MtrunA17_Chr4g0032301 84.112 107 17 0 23 129 24 130 5.58e-63 189
Msa1039380 MtrunA17_Chr7g0268831 75.806 124 28 1 6 129 7 128 8.56e-62 186
Msa1039380 MtrunA17_Chr7g0259151 73.134 134 34 2 1 134 1 132 7.01e-61 184
Msa1039380 MtrunA17_Chr7g0273351 72.868 129 31 1 1 129 1 125 8.11e-61 183
Msa1039380 MtrunA17_Chr7g0273331 72.868 129 31 1 1 129 57 181 6.27e-60 183
Msa1039380 MtrunA17_Chr2g0319191 78.378 111 24 0 18 128 11 121 5.41e-59 179
Msa1039380 MtrunA17_Chr2g0319181 78.899 109 23 0 21 129 14 122 1.85e-58 177
Msa1039380 MtrunA17_Chr6g0449661 79.661 118 13 3 23 137 85 194 2.30e-58 179
Msa1039380 MtrunA17_Chr3g0119971 78.632 117 14 3 24 137 81 189 1.34e-57 177
Msa1039380 MtrunA17_Chr7g0273341 66.667 123 28 3 7 129 44 153 2.10e-47 150
Msa1039380 MtrunA17_Chr4g0031031 83.784 74 12 0 44 117 10 83 4.41e-39 127
Msa1039380 MtrunA17_Chr1g0148961 54.032 124 55 2 7 129 10 132 2.11e-37 124
Msa1039380 MtrunA17_Chr1g0148951 54.032 124 55 2 7 129 10 132 2.11e-37 124
Msa1039380 MtrunA17_Chr1g0211651 53.782 119 53 2 10 127 10 127 2.20e-36 121
Msa1039380 MtrunA17_Chr1g0184901 57.692 104 42 2 25 127 28 130 1.30e-34 117
Msa1039380 MtrunA17_Chr4g0024701 46.667 105 36 2 23 127 26 110 1.64e-22 85.9
Msa1039380 MtrunA17_Chr1g0183701 60.938 64 25 0 66 129 30 93 1.62e-19 77.8
Msa1039380 MtrunA17_Chr4g0000531 68.889 45 14 0 84 128 5 49 1.91e-14 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039380 AT5G27670.1 78.571 140 28 1 1 138 1 140 1.28e-78 229
Msa1039380 AT5G02560.1 81.356 118 22 0 20 137 21 138 2.79e-66 198
Msa1039380 AT5G59870.1 72.662 139 33 2 4 137 3 141 4.14e-65 195
Msa1039380 AT5G02560.2 67.606 142 22 1 20 137 21 162 1.87e-60 184
Msa1039380 AT1G51060.1 74.167 120 31 0 18 137 11 130 2.08e-60 182
Msa1039380 AT1G08880.1 72.222 126 31 1 7 128 2 127 3.19e-59 180
Msa1039380 AT4G27230.2 72.500 120 33 0 18 137 11 130 1.24e-58 178
Msa1039380 AT4G27230.1 72.500 120 33 0 18 137 11 130 1.24e-58 178
Msa1039380 AT5G54640.1 75.862 116 28 0 18 133 11 126 1.40e-58 178
Msa1039380 AT1G54690.1 73.171 123 29 1 11 129 6 128 1.53e-58 178
Msa1039380 AT3G20670.1 71.901 121 34 0 18 138 11 131 2.55e-58 177
Msa1039380 AT2G38810.1 57.143 112 44 3 20 129 25 134 4.24e-36 121
Msa1039380 AT2G38810.4 57.143 112 44 3 20 129 25 134 4.24e-36 121
Msa1039380 AT2G38810.3 57.143 112 44 3 20 129 25 134 4.24e-36 121
Msa1039380 AT2G38810.2 57.143 112 44 3 20 129 25 134 4.24e-36 121
Msa1039380 AT1G52740.1 56.190 105 44 2 24 127 27 130 9.66e-35 117
Msa1039380 AT3G54560.1 56.481 108 43 3 24 129 29 134 6.25e-34 115
Msa1039380 AT3G54560.2 56.481 108 43 3 24 129 29 134 6.25e-34 115
Msa1039380 AT4G13570.1 45.161 93 47 3 31 121 28 118 9.59e-20 79.0
Msa1039380 AT4G13570.2 40.187 107 60 3 17 121 20 124 9.72e-20 79.3

Find 49 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACACAGGGTTAATATT+TGG 0.220863 7_1:+76528995 None:intergenic
AGGAATGTGAAATTGGAATT+TGG 0.240114 7_1:+76529510 None:intergenic
GTAAAATAGGAATGTGAAAT+TGG 0.292099 7_1:+76529503 None:intergenic
ATGGAGGGAATGAGTAAAAT+AGG 0.297025 7_1:+76529490 None:intergenic
GGGGAATTGAAGACCGGCTT+TGG 0.356697 7_1:+76529348 None:intergenic
ACCTTTGGTGGTTGTGGTGG+TGG 0.362825 7_1:+76529420 None:intergenic
GTGAGGAACGATGATGAATT+AGG 0.390738 7_1:-76529061 Msa1039380:CDS
TTTGGTGGTTGTGGTGGTGG+TGG 0.425133 7_1:+76529423 None:intergenic
AACCTAGCTATACGACCAAC+GGG 0.429162 7_1:+76529328 None:intergenic
ACCGGCACCTTTGGTGGTTG+TGG 0.439021 7_1:+76529414 None:intergenic
TCTTCCACCGGCACCTTTGG+TGG 0.442255 7_1:+76529408 None:intergenic
TATTCTCAGCGTGTTGGCAC+TGG 0.452088 7_1:-76529289 Msa1039380:CDS
TTTAGATCTAACAATTTCGT+TGG 0.460072 7_1:-76528831 Msa1039380:three_prime_UTR
TGTAATGTAGGTTCTTGAAT+TGG 0.463460 7_1:-76529146 Msa1039380:intron
ACAGCAAGGCACACGTGTCT+AGG 0.469171 7_1:+76529082 None:intergenic
ATGTAGGTTCTTGAATTGGC+TGG 0.481956 7_1:-76529142 Msa1039380:intron
TTTATTGAAGTGCATTTACA+TGG 0.483044 7_1:-76528888 Msa1039380:three_prime_UTR
AAAGGTGCCGGTGGAAGAAA+AGG 0.504433 7_1:-76529403 Msa1039380:CDS
TGTAGGTTCTTGAATTGGCT+GGG 0.516295 7_1:-76529141 Msa1039380:intron
AGAACGGCGGCGAGGTAGAT+CGG 0.519256 7_1:+76529262 None:intergenic
TCCCCGTTGGTCGTATAGCT+AGG 0.519588 7_1:-76529330 Msa1039380:CDS
GAATTGAAGACCGGCTTTGG+AGG 0.520441 7_1:+76529351 None:intergenic
GAATTAGGAAAATTGCTTCA+AGG 0.523033 7_1:-76529046 Msa1039380:CDS
CAGCAAGGCACACGTGTCTA+GGG 0.534173 7_1:+76529083 None:intergenic
ACCACAACCACCAAAGGTGC+CGG 0.539479 7_1:-76529415 Msa1039380:CDS
ATAGCTAGGTTCATGAAGAA+AGG 0.556055 7_1:-76529316 Msa1039380:CDS
GGCACCTTTGGTGGTTGTGG+TGG 0.562059 7_1:+76529417 None:intergenic
GTGGAAGAAAAGGCGGCGAA+AGG 0.564273 7_1:-76529393 Msa1039380:CDS
TCGTTGGATGATAAATGTAG+TGG 0.571863 7_1:-76528815 Msa1039380:three_prime_UTR
GTTTCAAAATCCTCCAAAGC+CGG 0.573530 7_1:-76529361 Msa1039380:CDS
GCCGGTCTTCAATTCCCCGT+TGG 0.577353 7_1:-76529343 Msa1039380:CDS
ACCACCACCACAACCACCAA+AGG 0.585404 7_1:-76529421 Msa1039380:CDS
GCCAAAGAAAACCGTTGCTG+CGG 0.590680 7_1:-76528972 Msa1039380:CDS
TCTCGAATATCTCGCTGCCG+AGG 0.591297 7_1:-76529242 Msa1039380:intron
GAACCTAGCTATACGACCAA+CGG 0.599597 7_1:+76529327 None:intergenic
AAACGTAAATAAAGCGAGAG+AGG 0.611514 7_1:+76528748 None:intergenic
GGTCGCTATTCTCAGCGTGT+TGG 0.618289 7_1:-76529295 Msa1039380:CDS
ACCAACGGGGAATTGAAGAC+CGG 0.624424 7_1:+76529342 None:intergenic
GGTGTGACAATTGCTAGCGG+TGG 0.643712 7_1:-76529025 Msa1039380:CDS
CATCATCGTTCCTCACAGCA+AGG 0.645037 7_1:+76529068 None:intergenic
ACAACCACCAAAGGTGCCGG+TGG 0.651787 7_1:-76529412 Msa1039380:CDS
GACACGTGTGCCTTGCTGTG+AGG 0.657788 7_1:-76529078 Msa1039380:CDS
GGCAGCGAGATATTCGAGAA+CGG 0.664119 7_1:+76529246 None:intergenic
GGTGCCGGTGGAAGAAAAGG+CGG 0.678900 7_1:-76529400 Msa1039380:CDS
TTAAAAGTAAGATTATACAA+TGG 0.683103 7_1:+76528923 None:intergenic
GATATTCGAGAACGGCGGCG+AGG 0.697780 7_1:+76529254 None:intergenic
CAAGGTGTGACAATTGCTAG+CGG 0.706294 7_1:-76529028 Msa1039380:CDS
AGCGAGATATTCGAGAACGG+CGG 0.709556 7_1:+76529249 None:intergenic
ACCTAGCTATACGACCAACG+GGG 0.792421 7_1:+76529329 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGAAAAAACAA+TGG - chr7_1:76528842-76528861 Msa1039380:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr7_1:76529115-76529134 Msa1039380:CDS 10.0%
!! AAAAAAAAAAGAAAAAACAA+TGG - chr7_1:76528842-76528861 Msa1039380:three_prime_UTR 10.0%
!!! TTTGTAATTAATTAATGTTT+TGG - chr7_1:76529115-76529134 Msa1039380:CDS 10.0%
!! TTAAAAGTAAGATTATACAA+TGG + chr7_1:76529371-76529390 None:intergenic 15.0%
!! TTAAAAGTAAGATTATACAA+TGG + chr7_1:76529371-76529390 None:intergenic 15.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr7_1:76528791-76528810 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr7_1:76529081-76529100 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr7_1:76529403-76529422 Msa1039380:CDS 25.0%
! TTTAGATCTAACAATTTCGT+TGG - chr7_1:76529460-76529479 Msa1039380:five_prime_UTR 25.0%
! GTAAAATAGGAATGTGAAAT+TGG + chr7_1:76528791-76528810 None:intergenic 25.0%
!!! GAATTTCGCTTTGAAATATA+CGG + chr7_1:76529081-76529100 None:intergenic 25.0%
! TTTATTGAAGTGCATTTACA+TGG - chr7_1:76529403-76529422 Msa1039380:CDS 25.0%
! TTTAGATCTAACAATTTCGT+TGG - chr7_1:76529460-76529479 Msa1039380:five_prime_UTR 25.0%
AGGAATGTGAAATTGGAATT+TGG + chr7_1:76528784-76528803 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr7_1:76528823-76528842 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr7_1:76529069-76529088 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr7_1:76529133-76529152 Msa1039380:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr7_1:76529145-76529164 Msa1039380:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr7_1:76529245-76529264 Msa1039380:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr7_1:76529299-76529318 None:intergenic 30.0%
AGGAATGTGAAATTGGAATT+TGG + chr7_1:76528784-76528803 None:intergenic 30.0%
!!! TTTTTTTTGCGATCCGAAAA+TGG + chr7_1:76528823-76528842 None:intergenic 30.0%
GAAATATACGGAAAATACCT+CGG + chr7_1:76529069-76529088 None:intergenic 30.0%
TTTGGTATGTGATGTAATGT+AGG - chr7_1:76529133-76529152 Msa1039380:CDS 30.0%
TGTAATGTAGGTTCTTGAAT+TGG - chr7_1:76529145-76529164 Msa1039380:intron 30.0%
GAATTAGGAAAATTGCTTCA+AGG - chr7_1:76529245-76529264 Msa1039380:CDS 30.0%
AACAACACAGGGTTAATATT+TGG + chr7_1:76529299-76529318 None:intergenic 30.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr7_1:76528804-76528823 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr7_1:76528807-76528826 Msa1039380:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr7_1:76528975-76528994 Msa1039380:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr7_1:76529310-76529329 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr7_1:76529476-76529495 Msa1039380:five_prime_UTR 35.0%
GGATGAAGTGTGATAAAGAT+TGG + chr7_1:76528763-76528782 None:intergenic 35.0%
ATGGAGGGAATGAGTAAAAT+AGG + chr7_1:76528804-76528823 None:intergenic 35.0%
! TTACTCATTCCCTCCATTTT+CGG - chr7_1:76528807-76528826 Msa1039380:three_prime_UTR 35.0%
ATAGCTAGGTTCATGAAGAA+AGG - chr7_1:76528975-76528994 Msa1039380:CDS 35.0%
! TTTTCTTTGGCAACAACACA+GGG + chr7_1:76529310-76529329 None:intergenic 35.0%
TCGTTGGATGATAAATGTAG+TGG - chr7_1:76529476-76529495 Msa1039380:five_prime_UTR 35.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr7_1:76528819-76528838 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr7_1:76528820-76528839 None:intergenic 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr7_1:76528931-76528950 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr7_1:76528930-76528949 Msa1039380:three_prime_UTR 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr7_1:76529149-76529168 Msa1039380:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr7_1:76529150-76529169 Msa1039380:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr7_1:76529230-76529249 Msa1039380:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr7_1:76529311-76529330 None:intergenic 40.0%
! TTTTGCGATCCGAAAATGGA+GGG + chr7_1:76528819-76528838 None:intergenic 40.0%
! TTTTTGCGATCCGAAAATGG+AGG + chr7_1:76528820-76528839 None:intergenic 40.0%
!!! GGCTTTGGAGGATTTTGAAA+CGG + chr7_1:76528931-76528950 None:intergenic 40.0%
GTTTCAAAATCCTCCAAAGC+CGG - chr7_1:76528930-76528949 Msa1039380:three_prime_UTR 40.0%
ATGTAGGTTCTTGAATTGGC+TGG - chr7_1:76529149-76529168 Msa1039380:intron 40.0%
TGTAGGTTCTTGAATTGGCT+GGG - chr7_1:76529150-76529169 Msa1039380:intron 40.0%
GTGAGGAACGATGATGAATT+AGG - chr7_1:76529230-76529249 Msa1039380:intron 40.0%
! GTTTTCTTTGGCAACAACAC+AGG + chr7_1:76529311-76529330 None:intergenic 40.0%
AACCTAGCTATACGACCAAC+GGG + chr7_1:76528966-76528985 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr7_1:76528967-76528986 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+CGG - chr7_1:76529263-76529282 Msa1039380:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr7_1:76529333-76529352 None:intergenic 45.0%
AACCTAGCTATACGACCAAC+GGG + chr7_1:76528966-76528985 None:intergenic 45.0%
GAACCTAGCTATACGACCAA+CGG + chr7_1:76528967-76528986 None:intergenic 45.0%
CAAGGTGTGACAATTGCTAG+CGG - chr7_1:76529263-76529282 Msa1039380:CDS 45.0%
! AGTAGTTTTCTCCGCAGCAA+CGG + chr7_1:76529333-76529352 None:intergenic 45.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr7_1:76528889-76528908 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr7_1:76528888-76528907 Msa1039380:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr7_1:76528943-76528962 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr7_1:76528952-76528971 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr7_1:76528965-76528984 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr7_1:76529002-76529021 Msa1039380:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr7_1:76529045-76529064 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr7_1:76529048-76529067 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr7_1:76529226-76529245 None:intergenic 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr7_1:76529319-76529338 Msa1039380:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr7_1:76529323-76529342 None:intergenic 50.0%
! TTTTCTTCCACCGGCACCTT+TGG + chr7_1:76528889-76528908 None:intergenic 50.0%
!! AAAGGTGCCGGTGGAAGAAA+AGG - chr7_1:76528888-76528907 Msa1039380:three_prime_UTR 50.0%
! GAATTGAAGACCGGCTTTGG+AGG + chr7_1:76528943-76528962 None:intergenic 50.0%
ACCAACGGGGAATTGAAGAC+CGG + chr7_1:76528952-76528971 None:intergenic 50.0%
ACCTAGCTATACGACCAACG+GGG + chr7_1:76528965-76528984 None:intergenic 50.0%
! TATTCTCAGCGTGTTGGCAC+TGG - chr7_1:76529002-76529021 Msa1039380:CDS 50.0%
AGCGAGATATTCGAGAACGG+CGG + chr7_1:76529045-76529064 None:intergenic 50.0%
GGCAGCGAGATATTCGAGAA+CGG + chr7_1:76529048-76529067 None:intergenic 50.0%
CATCATCGTTCCTCACAGCA+AGG + chr7_1:76529226-76529245 None:intergenic 50.0%
GCCAAAGAAAACCGTTGCTG+CGG - chr7_1:76529319-76529338 Msa1039380:CDS 50.0%
! TCCGCAGCAACGGTTTTCTT+TGG + chr7_1:76529323-76529342 None:intergenic 50.0%
!! TTTGGTGGTTGTGGTGGTGG+TGG + chr7_1:76528871-76528890 None:intergenic 55.0%
ACCACCACCACAACCACCAA+AGG - chr7_1:76528870-76528889 Msa1039380:three_prime_UTR 55.0%
! ACCTTTGGTGGTTGTGGTGG+TGG + chr7_1:76528874-76528893 None:intergenic 55.0%
! ACCACAACCACCAAAGGTGC+CGG - chr7_1:76528876-76528895 Msa1039380:three_prime_UTR 55.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr7_1:76528898-76528917 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr7_1:76528898-76528917 Msa1039380:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr7_1:76528946-76528965 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr7_1:76528961-76528980 Msa1039380:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr7_1:76528996-76529015 Msa1039380:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr7_1:76529049-76529068 Msa1039380:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr7_1:76529211-76529230 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr7_1:76529212-76529231 None:intergenic 55.0%
GGTGTGACAATTGCTAGCGG+TGG - chr7_1:76529266-76529285 Msa1039380:CDS 55.0%
!! TTTGGTGGTTGTGGTGGTGG+TGG + chr7_1:76528871-76528890 None:intergenic 55.0%
ACCACCACCACAACCACCAA+AGG - chr7_1:76528870-76528889 Msa1039380:three_prime_UTR 55.0%
! ACCTTTGGTGGTTGTGGTGG+TGG + chr7_1:76528874-76528893 None:intergenic 55.0%
! ACCACAACCACCAAAGGTGC+CGG - chr7_1:76528876-76528895 Msa1039380:three_prime_UTR 55.0%
! TTCGCCGCCTTTTCTTCCAC+CGG + chr7_1:76528898-76528917 None:intergenic 55.0%
GTGGAAGAAAAGGCGGCGAA+AGG - chr7_1:76528898-76528917 Msa1039380:three_prime_UTR 55.0%
! GGGGAATTGAAGACCGGCTT+TGG + chr7_1:76528946-76528965 None:intergenic 55.0%
TCCCCGTTGGTCGTATAGCT+AGG - chr7_1:76528961-76528980 Msa1039380:CDS 55.0%
GGTCGCTATTCTCAGCGTGT+TGG - chr7_1:76528996-76529015 Msa1039380:CDS 55.0%
TCTCGAATATCTCGCTGCCG+AGG - chr7_1:76529049-76529068 Msa1039380:CDS 55.0%
CAGCAAGGCACACGTGTCTA+GGG + chr7_1:76529211-76529230 None:intergenic 55.0%
ACAGCAAGGCACACGTGTCT+AGG + chr7_1:76529212-76529231 None:intergenic 55.0%
GGTGTGACAATTGCTAGCGG+TGG - chr7_1:76529266-76529285 Msa1039380:CDS 55.0%
! GGCACCTTTGGTGGTTGTGG+TGG + chr7_1:76528877-76528896 None:intergenic 60.0%
! ACCGGCACCTTTGGTGGTTG+TGG + chr7_1:76528880-76528899 None:intergenic 60.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr7_1:76528879-76528898 Msa1039380:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr7_1:76528886-76528905 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr7_1:76528891-76528910 Msa1039380:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr7_1:76528948-76528967 Msa1039380:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr7_1:76529032-76529051 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr7_1:76529040-76529059 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr7_1:76529213-76529232 Msa1039380:intron 60.0%
! GGCACCTTTGGTGGTTGTGG+TGG + chr7_1:76528877-76528896 None:intergenic 60.0%
! ACCGGCACCTTTGGTGGTTG+TGG + chr7_1:76528880-76528899 None:intergenic 60.0%
!! ACAACCACCAAAGGTGCCGG+TGG - chr7_1:76528879-76528898 Msa1039380:three_prime_UTR 60.0%
TCTTCCACCGGCACCTTTGG+TGG + chr7_1:76528886-76528905 None:intergenic 60.0%
!! GGTGCCGGTGGAAGAAAAGG+CGG - chr7_1:76528891-76528910 Msa1039380:three_prime_UTR 60.0%
GCCGGTCTTCAATTCCCCGT+TGG - chr7_1:76528948-76528967 Msa1039380:exon 60.0%
AGAACGGCGGCGAGGTAGAT+CGG + chr7_1:76529032-76529051 None:intergenic 60.0%
GATATTCGAGAACGGCGGCG+AGG + chr7_1:76529040-76529059 None:intergenic 60.0%
! GACACGTGTGCCTTGCTGTG+AGG - chr7_1:76529213-76529232 Msa1039380:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 76528761 76529552 76528761 ID=Msa1039380;Name=Msa1039380
chr7_1 mRNA 76528761 76529552 76528761 ID=Msa1039380-mRNA-1;Parent=Msa1039380;Name=Msa1039380-mRNA-1;_AED=0.39;_eAED=0.39;_QI=100|1|1|1|1|1|2|191|138
chr7_1 exon 76528761 76529158 76528761 ID=Msa1039380-mRNA-1:exon:19904;Parent=Msa1039380-mRNA-1
chr7_1 exon 76529243 76529552 76529243 ID=Msa1039380-mRNA-1:exon:19903;Parent=Msa1039380-mRNA-1
chr7_1 five_prime_UTR 76529453 76529552 76529453 ID=Msa1039380-mRNA-1:five_prime_utr;Parent=Msa1039380-mRNA-1
chr7_1 CDS 76529243 76529452 76529243 ID=Msa1039380-mRNA-1:cds;Parent=Msa1039380-mRNA-1
chr7_1 CDS 76528952 76529158 76528952 ID=Msa1039380-mRNA-1:cds;Parent=Msa1039380-mRNA-1
chr7_1 three_prime_UTR 76528761 76528951 76528761 ID=Msa1039380-mRNA-1:three_prime_utr;Parent=Msa1039380-mRNA-1
Gene Sequence

>Msa1039380

ATGGATTCCACCACCACCACAACCACCAAAGGTGCCGGTGGAAGAAAAGGCGGCGAAAGGAAGAAAGCCGTTTCAAAATCCTCCAAAGCCGGTCTTCAATTCCCCGTTGGTCGTATAGCTAGGTTCATGAAGAAAGGTCGCTATTCTCAGCGTGTTGGCACTGGTGCTCCGATCTACCTCGCCGCCGTTCTCGAATATCTCGCTGCCGAGGTTCTTGAATTGGCTGGGAATGCTGCAAGAGATAACAAGAAGAACAGAATTAACCCTAGACACGTGTGCCTTGCTGTGAGGAACGATGATGAATTAGGAAAATTGCTTCAAGGTGTGACAATTGCTAGCGGTGGAGTTTTGCCAAATATTAACCCTGTGTTGTTGCCAAAGAAAACCGTTGCTGCGGAGAAAACTACTAAGAAATAA
Protein sequence

>Msa1039380

MDSTTTTTTKGAGGRKGGERKKAVSKSSKAGLQFPVGRIARFMKKGRYSQRVGTGAPIYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHVCLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTVAAEKTTKK*