AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1041840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041840 MtrunA17_Chr7g0265751 98.777 327 4 0 1 327 1 327 0.0 670
Msa1041840 MtrunA17_Chr2g0320801 60.377 318 87 4 1 305 1 292 8.14e-119 345
Msa1041840 MtrunA17_Chr1g0162821 72.362 199 41 2 1 199 1 185 1.26e-106 312
Msa1041840 MtrunA17_Chr2g0276901 37.755 98 58 1 92 186 28 125 5.28e-18 84.7
Msa1041840 MtrunA17_Chr2g0276891 55.102 49 22 0 9 57 184 232 2.88e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1041840 AT5G42820.1 64.026 303 83 5 1 298 1 282 2.79e-115 335
Msa1041840 AT5G42820.2 64.026 303 83 5 1 298 1 282 2.79e-115 335
Msa1041840 AT1G27650.1 65.461 304 74 7 1 292 1 285 5.07e-113 330
Msa1041840 AT1G27650.2 59.843 254 71 7 51 292 1 235 1.92e-73 227
Msa1041840 AT1G10320.2 34.426 183 97 3 9 186 228 392 1.51e-34 134
Msa1041840 AT1G10320.1 34.426 183 97 3 9 186 237 401 1.69e-34 134
Msa1041840 AT3G44785.1 65.753 73 24 1 1 73 1 72 3.90e-29 107

Find 123 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATATTTCATTTCTGTATT+TGG 0.102491 7_1:+79501812 Msa1041840:three_prime_UTR
ATGCTCCGCCATCGATTATT+AGG 0.132506 7_1:-79499159 None:intergenic
TAAGAGATGTGAAACAATTT+TGG 0.157960 7_1:+79501918 Msa1041840:three_prime_UTR
AAGTGTTCTTGGAGTTTATC+AGG 0.235787 7_1:-79499422 None:intergenic
TATGAGGGGCGTTCGTATTC+TGG 0.248763 7_1:+79501321 Msa1041840:CDS
CATTCAGAAGATCCACAAAA+TGG 0.251545 7_1:-79502038 None:intergenic
CTTGAATATTTGTGACAATT+TGG 0.267256 7_1:+79499582 Msa1041840:CDS
GATTTGAGGAAGCGATTATT+TGG 0.276417 7_1:+79501231 Msa1041840:CDS
TTATCAGGGTCAAGAGATTC+AGG 0.286148 7_1:-79499407 None:intergenic
TGCCGAGGACTACGGCTTCT+TGG 0.303158 7_1:-79501399 None:intergenic
TACATACATCGAAGTGTTCT+TGG 0.310686 7_1:-79499433 None:intergenic
TCGTATTCTGGCCGTGGTTC+TGG 0.312884 7_1:+79501333 Msa1041840:CDS
TTACTTGCAGAAATTATTAC+AGG 0.313162 7_1:-79501674 None:intergenic
AATAATTTCTGCAAGTAATC+TGG 0.317375 7_1:+79501679 Msa1041840:three_prime_UTR
GAGAAGGAAGTTGGAGATTC+TGG 0.338699 7_1:+79501534 Msa1041840:CDS
TGAGGTTGTTGAGGTTGATT+AGG 0.344172 7_1:-79499365 None:intergenic
TTACAGGGTCTTCTCACTTT+GGG 0.346064 7_1:-79501658 None:intergenic
GAGCATTTAGCATCGATATT+CGG 0.354185 7_1:+79499176 Msa1041840:CDS
CTTTCTCTTTCTCCTCTGAT+AGG 0.355688 7_1:-79501471 None:intergenic
TGAGGTGGTTGAGGAGGTTG+AGG 0.362652 7_1:-79499383 None:intergenic
TGCTCCGCCATCGATTATTA+GGG 0.367053 7_1:-79499158 None:intergenic
CTTTCTCCTCTGATAGGATT+CGG 0.367164 7_1:-79501465 None:intergenic
TGGTTCTGGTAGAAGGGATT+TGG 0.369893 7_1:+79501347 Msa1041840:CDS
CCCTCATAGTTACGATTTCT+CGG 0.370767 7_1:-79501306 None:intergenic
CTGGCCGTGGTTCTGGTAGA+AGG 0.372740 7_1:+79501340 Msa1041840:CDS
GATTCAGGTTGAGGTGGTTG+AGG 0.376296 7_1:-79499392 None:intergenic
ATAAAGTTAAGGTTCATATC+AGG 0.384960 7_1:-79499332 None:intergenic
TTTGAGGAGCTGAGCAAGTA+TGG 0.394906 7_1:+79499547 Msa1041840:CDS
GAGTAGGATTGATAAAGTTA+AGG 0.396234 7_1:-79499343 None:intergenic
GGCTTCTTGGCCTTCTACCA+TGG 0.400878 7_1:-79501386 None:intergenic
CTAGAATAGAACAATGGAAC+AGG 0.401571 7_1:+79501511 Msa1041840:CDS
TGTTGACTTCTCTCCTGTTA+CGG 0.406173 7_1:+79501023 Msa1041840:CDS
GCTTCTCGAAAATCCGTAAC+AGG 0.408045 7_1:-79501036 None:intergenic
ATTACAGGGTCTTCTCACTT+TGG 0.418323 7_1:-79501659 None:intergenic
AAAACTACAGCCAACTCAAT+AGG 0.421667 7_1:-79501717 None:intergenic
TGACAATTTGGCTGATCATA+TGG 0.424836 7_1:+79499594 Msa1041840:CDS
AGTAGGACTAATGGTGGGTT+TGG 0.429071 7_1:-79499282 None:intergenic
AACATAAATAAATCTCGAAA+GGG 0.429853 7_1:+79499114 Msa1041840:five_prime_UTR
CTCATGGCTCCCATGGTAGA+AGG 0.441236 7_1:+79501376 Msa1041840:CDS
AATCACTATAAAATAGTTAA+CGG 0.444979 7_1:+79501986 Msa1041840:three_prime_UTR
TGTTGAGGTTGATTAGGAGT+AGG 0.451883 7_1:-79499359 None:intergenic
CCTTTGATTTCAGAGATTTG+AGG 0.452267 7_1:+79501217 Msa1041840:intron
GATTATTTGGAAGAAGTAGT+AGG 0.454782 7_1:+79501244 Msa1041840:CDS
CCTCATAGTTACGATTTCTC+GGG 0.458427 7_1:-79501305 None:intergenic
TGCATCTAAAGAAGATTAGC+AGG 0.461797 7_1:+79501115 Msa1041840:CDS
AGATTACCTGGGTGAAATAG+AGG 0.463565 7_1:+79501863 Msa1041840:three_prime_UTR
CCCGAGAAATCGTAACTATG+AGG 0.480351 7_1:+79501305 Msa1041840:CDS
TCAGGTTGAGGTGGTTGAGG+AGG 0.483616 7_1:-79499389 None:intergenic
AAAGAGAAAGTAGTGTAGAA+AGG 0.483749 7_1:+79501484 Msa1041840:CDS
TGGAACAGGGAGAAGGAAGT+TGG 0.485919 7_1:+79501525 Msa1041840:CDS
ATTCAGAAGATCCACAAAAT+GGG 0.489931 7_1:-79502037 None:intergenic
GGAGAGAAGTCAACAATGAT+TGG 0.494146 7_1:-79501015 None:intergenic
GGACTCCTGTCTCTTCCCAT+TGG 0.497688 7_1:-79501444 None:intergenic
AAACTCTGTTGGAGATTACC+TGG 0.498335 7_1:+79501851 Msa1041840:three_prime_UTR
GCTCCGATCTTGAAGTAGAA+TGG 0.500982 7_1:-79499224 None:intergenic
CTCATAGTTACGATTTCTCG+GGG 0.504601 7_1:-79501304 None:intergenic
CTGGTAGAAGGGATTTGGAC+AGG 0.507028 7_1:+79501352 Msa1041840:CDS
GGCCAAGAAGCCGTAGTCCT+CGG 0.507965 7_1:+79501397 Msa1041840:CDS
TGAGGAGGTTGAGGTTGTTG+AGG 0.510776 7_1:-79499374 None:intergenic
GCTTCTTGGCCTTCTACCAT+GGG 0.511138 7_1:-79501385 None:intergenic
GGGTCAAGAGATTCAGGTTG+AGG 0.514083 7_1:-79499401 None:intergenic
GGGCGTTCGTATTCTGGCCG+TGG 0.515780 7_1:+79501327 Msa1041840:CDS
TTGGAAGAAGTAGTAGGCGT+TGG 0.517691 7_1:+79501250 Msa1041840:CDS
GACAGGTCTCATGGCTCCCA+TGG 0.524520 7_1:+79501369 Msa1041840:CDS
TTAGTTTGCACCTATTGAGT+TGG 0.528104 7_1:+79501707 Msa1041840:three_prime_UTR
GAGAACAAGAGTAGGACTAA+TGG 0.530039 7_1:-79499291 None:intergenic
AGGCGGAGTAGAAGTCCAAT+GGG 0.531064 7_1:+79501429 Msa1041840:CDS
ATCAGGACGTTGATACATGT+TGG 0.531267 7_1:-79499315 None:intergenic
GAAGTCCAATGGGAAGAGAC+AGG 0.531891 7_1:+79501439 Msa1041840:CDS
TGTATATGTTCAGTATAAAG+AGG 0.534599 7_1:+79499718 Msa1041840:CDS
ACCGTAGTGGAAGCAGAAGC+CGG 0.541010 7_1:+79501277 Msa1041840:CDS
CAACATAAATAAATCTCGAA+AGG 0.544906 7_1:+79499113 Msa1041840:five_prime_UTR
TGTTCGATGGTAAACTCTGT+TGG 0.545340 7_1:+79501840 Msa1041840:three_prime_UTR
TCCGGCTTCTGCTTCCACTA+CGG 0.545385 7_1:-79501278 None:intergenic
TGGCCGTGGTTCTGGTAGAA+GGG 0.546507 7_1:+79501341 Msa1041840:CDS
CCGAGAAATCGTAACTATGA+GGG 0.550258 7_1:+79501306 Msa1041840:CDS
AATAGTTAACGGAAGAAGTG+AGG 0.560146 7_1:+79501997 Msa1041840:three_prime_UTR
AGGGATTTGGACAGGTCTCA+TGG 0.560557 7_1:+79501360 Msa1041840:CDS
AGTGTTCTTGGAGTTTATCA+GGG 0.562952 7_1:-79499421 None:intergenic
AACAATGATTATGAAGAGGC+GGG 0.563713 7_1:+79501576 Msa1041840:CDS
TTCCTCTATGCCGAGGACTA+CGG 0.567765 7_1:-79501407 None:intergenic
AATGCTCTTATGAATCTCAC+TGG 0.570244 7_1:+79499755 Msa1041840:CDS
TGTCCATTCTACTTCAAGAT+CGG 0.570630 7_1:+79499221 Msa1041840:CDS
AAGGCGGAGTAGAAGTCCAA+TGG 0.574467 7_1:+79501428 Msa1041840:CDS
AGCCGTAGTCCTCGGCATAG+AGG 0.581691 7_1:+79501405 Msa1041840:CDS
AGAACAATGGAACAGGGAGA+AGG 0.596602 7_1:+79501518 Msa1041840:CDS
ATTTGCAACAGAACAAAGGA+AGG 0.601935 7_1:-79501966 None:intergenic
TCATAAGAGCATTAGCAGCA+TGG 0.602037 7_1:-79499745 None:intergenic
GTAGTCCTCGGCATAGAGGA+AGG 0.603594 7_1:+79501409 Msa1041840:CDS
GAAAGGGGTTCGTGAGAGAG+TGG 0.603769 7_1:+79499130 Msa1041840:five_prime_UTR
TAACAATGATTATGAAGAGG+CGG 0.605105 7_1:+79501575 Msa1041840:CDS
AGAAGTCAACAATGATTGGT+CGG 0.606403 7_1:-79501011 None:intergenic
CATAGTTACGATTTCTCGGG+GGG 0.607441 7_1:-79501302 None:intergenic
AGTGATTTGCAACAGAACAA+AGG 0.611402 7_1:-79501970 None:intergenic
GATTACCTGGGTGAAATAGA+GGG 0.614308 7_1:+79501864 Msa1041840:three_prime_UTR
GGCGAAACCCTAATAATCGA+TGG 0.614459 7_1:+79499151 Msa1041840:exon
AACAAGAGTAGGACTAATGG+TGG 0.614682 7_1:-79499288 None:intergenic
TCAAGAGATTCAGGTTGAGG+TGG 0.615585 7_1:-79499398 None:intergenic
AAGATCGGAGCTTGTAGACA+TGG 0.618937 7_1:+79499236 Msa1041840:CDS
CTCCGCCTTCCTCTATGCCG+AGG 0.622022 7_1:-79501414 None:intergenic
GTATTTGGATGAATGTTCGA+TGG 0.623654 7_1:+79501827 Msa1041840:three_prime_UTR
AGTTAACGGAAGAAGTGAGG+AGG 0.623894 7_1:+79502000 Msa1041840:three_prime_UTR
GAGTAACAATGATTATGAAG+AGG 0.626539 7_1:+79501572 Msa1041840:CDS
AGTTGGAGATTCTGGTAACA+AGG 0.630652 7_1:+79501542 Msa1041840:CDS
AGGAGTCCGAATCCTATCAG+AGG 0.630679 7_1:+79501459 Msa1041840:CDS
AACTCTGTTGGAGATTACCT+GGG 0.633510 7_1:+79501852 Msa1041840:three_prime_UTR
CGAGAAATCGTAACTATGAG+GGG 0.636005 7_1:+79501307 Msa1041840:CDS
GAAGAGAATGTATGCAATCG+AGG 0.636366 7_1:+79501075 Msa1041840:CDS
ACATAAATAAATCTCGAAAG+GGG 0.642552 7_1:+79499115 Msa1041840:five_prime_UTR
TACTTGCAGAAATTATTACA+GGG 0.643592 7_1:-79501673 None:intergenic
ATGTTGGAGAGAACAAGAGT+AGG 0.650220 7_1:-79499299 None:intergenic
TCATAGTTACGATTTCTCGG+GGG 0.654148 7_1:-79501303 None:intergenic
GGAGAGCTAGAATAGAACAA+TGG 0.656515 7_1:+79501505 Msa1041840:CDS
CGGTTCCCTCTATTTCACCC+AGG 0.673223 7_1:-79501869 None:intergenic
GCATAGTTGAAATTCAAACA+CGG 0.675622 7_1:-79501889 None:intergenic
AGGCGTTGGAATGACCGTAG+TGG 0.684717 7_1:+79501264 Msa1041840:CDS
TAGAATAGAACAATGGAACA+GGG 0.687714 7_1:+79501512 Msa1041840:CDS
AATCCCTTCTACCAGAACCA+CGG 0.694334 7_1:-79501344 None:intergenic
ACAAGAGTAGGACTAATGGT+GGG 0.704223 7_1:-79499287 None:intergenic
GAAACCCTAATAATCGATGG+CGG 0.712302 7_1:+79499154 Msa1041840:exon
GAGAATGTATGCAATCGAGG+TGG 0.723621 7_1:+79501078 Msa1041840:CDS
GTCCTCGGCATAGAGGAAGG+CGG 0.728288 7_1:+79501412 Msa1041840:CDS
TGGTATGAAGACGAGAACAG+CGG 0.740225 7_1:-79499262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAATAAAAAATTGAA+GGG - chr7_1:79499475-79499494 None:intergenic 10.0%
!! AAATCAAAATAAAAAATTGA+AGG - chr7_1:79499476-79499495 None:intergenic 10.0%
!! AACAAAAATCATAAAAATTA+GGG - chr7_1:79499681-79499700 None:intergenic 10.0%
!! AAACAAAAATCATAAAAATT+AGG - chr7_1:79499682-79499701 None:intergenic 10.0%
!!! TATGATTTTTGTTTTTTTAT+AGG + chr7_1:79499688-79499707 Msa1041840:intron 10.0%
!! TATATATATATATGATGATT+TGG + chr7_1:79499870-79499889 Msa1041840:intron 10.0%
!! ATCAAAATAAAAAATTGAAG+GGG - chr7_1:79499474-79499493 None:intergenic 15.0%
!!! ATTTTTGTTTTTTTATAGGT+TGG + chr7_1:79499692-79499711 Msa1041840:intron 15.0%
!! AAAAAGAAAATTACAATTGT+GGG - chr7_1:79500756-79500775 None:intergenic 15.0%
!! CAAATATTAATGATTATTTC+AGG + chr7_1:79500857-79500876 Msa1041840:intron 15.0%
!! AATCACTATAAAATAGTTAA+CGG + chr7_1:79501986-79502005 Msa1041840:three_prime_UTR 15.0%
!! AACATAAATAAATCTCGAAA+GGG + chr7_1:79499114-79499133 Msa1041840:five_prime_UTR 20.0%
!!! TTTTTATGAAGATCTATTTG+AGG + chr7_1:79499531-79499550 Msa1041840:CDS 20.0%
!! TTCATAAATCAAAAAGAGAA+AGG - chr7_1:79499634-79499653 None:intergenic 20.0%
!!! TTTTTCTAAGACAAACTATT+AGG + chr7_1:79500290-79500309 Msa1041840:intron 20.0%
!! TTTAGATTGAGATATTCAAT+TGG + chr7_1:79500497-79500516 Msa1041840:intron 20.0%
!!! TTTTTTTTTTTTTTCCTTCC+TGG + chr7_1:79500728-79500747 Msa1041840:intron 20.0%
!! GAAAAAGAAAATTACAATTG+TGG - chr7_1:79500757-79500776 None:intergenic 20.0%
!!! TATTAATGATTATTTCAGGT+AGG + chr7_1:79500861-79500880 Msa1041840:intron 20.0%
!!! AAAAATTGAAAAGCATGAAT+AGG - chr7_1:79501158-79501177 None:intergenic 20.0%
! CAACATAAATAAATCTCGAA+AGG + chr7_1:79499113-79499132 Msa1041840:five_prime_UTR 25.0%
! ACATAAATAAATCTCGAAAG+GGG + chr7_1:79499115-79499134 Msa1041840:five_prime_UTR 25.0%
! ATAAAGTTAAGGTTCATATC+AGG - chr7_1:79499335-79499354 None:intergenic 25.0%
! CTTGAATATTTGTGACAATT+TGG + chr7_1:79499582-79499601 Msa1041840:CDS 25.0%
! TGTATATGTTCAGTATAAAG+AGG + chr7_1:79499718-79499737 Msa1041840:CDS 25.0%
!!! TATATATGATGATTTGGTTG+TGG + chr7_1:79499876-79499895 Msa1041840:intron 25.0%
! TTATTCAATTGTTTGTGCTT+TGG + chr7_1:79499912-79499931 Msa1041840:intron 25.0%
! ACATGACATATATTGAAACA+TGG - chr7_1:79499976-79499995 None:intergenic 25.0%
!!! CACTTGATTTATTTTTGTGT+TGG - chr7_1:79500047-79500066 None:intergenic 25.0%
! ACTAAAGGCAATATTCATAT+TGG + chr7_1:79500458-79500477 Msa1041840:intron 25.0%
! ATTGAGATATTCAATTGGTT+TGG + chr7_1:79500502-79500521 Msa1041840:intron 25.0%
!! TTATCTGATGGAATGATTTT+TGG + chr7_1:79500600-79500619 Msa1041840:intron 25.0%
! TACTTGCAGAAATTATTACA+GGG - chr7_1:79501676-79501695 None:intergenic 25.0%
! TTACTTGCAGAAATTATTAC+AGG - chr7_1:79501677-79501696 None:intergenic 25.0%
! AATAATTTCTGCAAGTAATC+TGG + chr7_1:79501679-79501698 Msa1041840:three_prime_UTR 25.0%
! GGATATTTCATTTCTGTATT+TGG + chr7_1:79501812-79501831 Msa1041840:three_prime_UTR 25.0%
!! TAAGAGATGTGAAACAATTT+TGG + chr7_1:79501918-79501937 Msa1041840:three_prime_UTR 25.0%
GAGTAGGATTGATAAAGTTA+AGG - chr7_1:79499346-79499365 None:intergenic 30.0%
!!! AGGTTCTGAATTTTGTAGTT+AGG + chr7_1:79499790-79499809 Msa1041840:intron 30.0%
!!! GGTTCTGAATTTTGTAGTTA+GGG + chr7_1:79499791-79499810 Msa1041840:intron 30.0%
! CAACTTTAGAGAGATAGTTA+GGG + chr7_1:79500132-79500151 Msa1041840:intron 30.0%
! TAATGAGTTGGATCGAAATT+TGG + chr7_1:79500327-79500346 Msa1041840:intron 30.0%
TGGTACATGATAGAACATTA+TGG + chr7_1:79500347-79500366 Msa1041840:intron 30.0%
TGAATCCTTTGTGTAACTAA+AGG + chr7_1:79500443-79500462 Msa1041840:intron 30.0%
TATTGCCTTTAGTTACACAA+AGG - chr7_1:79500451-79500470 None:intergenic 30.0%
CAATAAAAGTGGGTACAATA+AGG - chr7_1:79500547-79500566 None:intergenic 30.0%
!! CTTATTGTACCCACTTTTAT+TGG + chr7_1:79500545-79500564 Msa1041840:intron 30.0%
!! TGATGGAATGATTTTTGGAT+AGG + chr7_1:79500605-79500624 Msa1041840:intron 30.0%
!! AATCTCTGAAATCAAAGGTA+AGG - chr7_1:79501215-79501234 None:intergenic 30.0%
GATTATTTGGAAGAAGTAGT+AGG + chr7_1:79501244-79501263 Msa1041840:CDS 30.0%
AAAGAGAAAGTAGTGTAGAA+AGG + chr7_1:79501484-79501503 Msa1041840:CDS 30.0%
TAGAATAGAACAATGGAACA+GGG + chr7_1:79501512-79501531 Msa1041840:CDS 30.0%
GAGTAACAATGATTATGAAG+AGG + chr7_1:79501572-79501591 Msa1041840:CDS 30.0%
TAACAATGATTATGAAGAGG+CGG + chr7_1:79501575-79501594 Msa1041840:CDS 30.0%
GCATAGTTGAAATTCAAACA+CGG - chr7_1:79501892-79501911 None:intergenic 30.0%
! AACAATTTTGGATCGAATCA+TGG + chr7_1:79501930-79501949 Msa1041840:three_prime_UTR 30.0%
!! GAGCATTTAGCATCGATATT+CGG + chr7_1:79499176-79499195 Msa1041840:CDS 35.0%
TGTCCATTCTACTTCAAGAT+CGG + chr7_1:79499221-79499240 Msa1041840:CDS 35.0%
AGTGTTCTTGGAGTTTATCA+GGG - chr7_1:79499424-79499443 None:intergenic 35.0%
AAGTGTTCTTGGAGTTTATC+AGG - chr7_1:79499425-79499444 None:intergenic 35.0%
! TACATACATCGAAGTGTTCT+TGG - chr7_1:79499436-79499455 None:intergenic 35.0%
TGACAATTTGGCTGATCATA+TGG + chr7_1:79499594-79499613 Msa1041840:CDS 35.0%
AATGCTCTTATGAATCTCAC+TGG + chr7_1:79499755-79499774 Msa1041840:CDS 35.0%
! CTCACTGGAAGATTTTATTC+AGG + chr7_1:79499770-79499789 Msa1041840:CDS 35.0%
TATATACGTTGAAACACGAG+TGG - chr7_1:79500012-79500031 None:intergenic 35.0%
AGACTAGAGAGGATATGATT+AGG + chr7_1:79500104-79500123 Msa1041840:intron 35.0%
!! CCTAACTATCTCTCTAAAGT+TGG - chr7_1:79500134-79500153 None:intergenic 35.0%
! CCAACTTTAGAGAGATAGTT+AGG + chr7_1:79500131-79500150 Msa1041840:intron 35.0%
AGCACTTACAGTAGAAAAGA+TGG + chr7_1:79500156-79500175 Msa1041840:intron 35.0%
TAGAAAAGATGGAGCAAACT+AGG + chr7_1:79500167-79500186 Msa1041840:intron 35.0%
GACATGAGGATTAATTAGTG+AGG + chr7_1:79500218-79500237 Msa1041840:intron 35.0%
TAAGAAGGGCCAATAAAAGT+GGG - chr7_1:79500557-79500576 None:intergenic 35.0%
ACTCCCAAAATGAGTAAGAA+GGG - chr7_1:79500571-79500590 None:intergenic 35.0%
ATTCCATCAGATAAAGCTCA+AGG - chr7_1:79500594-79500613 None:intergenic 35.0%
AAATTACAATTGTGGGTACC+AGG - chr7_1:79500749-79500768 None:intergenic 35.0%
AAGCAATGATAGACAATGCA+CGG - chr7_1:79500937-79500956 None:intergenic 35.0%
TTGCTACTGACATTGTGATT+TGG + chr7_1:79500972-79500991 Msa1041840:intron 35.0%
AGAAGTCAACAATGATTGGT+CGG - chr7_1:79501014-79501033 None:intergenic 35.0%
!! ATTTTCGAGAAGCTACTTGT+AGG + chr7_1:79501046-79501065 Msa1041840:CDS 35.0%
TGCATCTAAAGAAGATTAGC+AGG + chr7_1:79501115-79501134 Msa1041840:CDS 35.0%
! AAAAGCATGAATAGGCTATG+TGG - chr7_1:79501150-79501169 None:intergenic 35.0%
!! CCTCAAATCTCTGAAATCAA+AGG - chr7_1:79501220-79501239 None:intergenic 35.0%
! CCTTTGATTTCAGAGATTTG+AGG + chr7_1:79501217-79501236 Msa1041840:intron 35.0%
GATTTGAGGAAGCGATTATT+TGG + chr7_1:79501231-79501250 Msa1041840:CDS 35.0%
CTAGAATAGAACAATGGAAC+AGG + chr7_1:79501511-79501530 Msa1041840:CDS 35.0%
AACAATGATTATGAAGAGGC+GGG + chr7_1:79501576-79501595 Msa1041840:CDS 35.0%
!! TTAGTTTGCACCTATTGAGT+TGG + chr7_1:79501707-79501726 Msa1041840:three_prime_UTR 35.0%
AAAACTACAGCCAACTCAAT+AGG - chr7_1:79501720-79501739 None:intergenic 35.0%
!! GTTTTGATATAGTTCAGCAG+TGG + chr7_1:79501791-79501810 Msa1041840:three_prime_UTR 35.0%
GTATTTGGATGAATGTTCGA+TGG + chr7_1:79501827-79501846 Msa1041840:three_prime_UTR 35.0%
ATTTGCAACAGAACAAAGGA+AGG - chr7_1:79501969-79501988 None:intergenic 35.0%
! AGTGATTTGCAACAGAACAA+AGG - chr7_1:79501973-79501992 None:intergenic 35.0%
AATAGTTAACGGAAGAAGTG+AGG + chr7_1:79501997-79502016 Msa1041840:three_prime_UTR 35.0%
! AGAAAATCTGACCCATTTTG+TGG + chr7_1:79502026-79502045 Msa1041840:three_prime_UTR 35.0%
GAAACCCTAATAATCGATGG+CGG + chr7_1:79499154-79499173 Msa1041840:exon 40.0%
ACAAGAGTAGGACTAATGGT+GGG - chr7_1:79499290-79499309 None:intergenic 40.0%
AACAAGAGTAGGACTAATGG+TGG - chr7_1:79499291-79499310 None:intergenic 40.0%
GAGAACAAGAGTAGGACTAA+TGG - chr7_1:79499294-79499313 None:intergenic 40.0%
ATGTTGGAGAGAACAAGAGT+AGG - chr7_1:79499302-79499321 None:intergenic 40.0%
ATCAGGACGTTGATACATGT+TGG - chr7_1:79499318-79499337 None:intergenic 40.0%
! TGTTGAGGTTGATTAGGAGT+AGG - chr7_1:79499362-79499381 None:intergenic 40.0%
! TGAGGTTGTTGAGGTTGATT+AGG - chr7_1:79499368-79499387 None:intergenic 40.0%
TTATCAGGGTCAAGAGATTC+AGG - chr7_1:79499410-79499429 None:intergenic 40.0%
!! TCATAAGAGCATTAGCAGCA+TGG - chr7_1:79499748-79499767 None:intergenic 40.0%
! GATGCGTGATCTGATAATGA+TGG + chr7_1:79499948-79499967 Msa1041840:intron 40.0%
AATCAAGTGTAGCAAAGACG+AGG + chr7_1:79500058-79500077 Msa1041840:intron 40.0%
ATCAAGTGTAGCAAAGACGA+GGG + chr7_1:79500059-79500078 Msa1041840:intron 40.0%
GGGTGTTAGCATTTGATGTA+TGG + chr7_1:79500079-79500098 Msa1041840:intron 40.0%
GATGTATGGTAAGACTAGAG+AGG + chr7_1:79500093-79500112 Msa1041840:intron 40.0%
ACATGTAGAGAGAAGACATG+AGG + chr7_1:79500204-79500223 Msa1041840:intron 40.0%
GAAGGTAGTCAAATCACTAG+AGG + chr7_1:79500256-79500275 Msa1041840:intron 40.0%
AGATCCAGAGACTAATGAGT+TGG + chr7_1:79500315-79500334 Msa1041840:intron 40.0%
!! ACTAAATGGGGTTGGCTAAA+TGG - chr7_1:79500384-79500403 None:intergenic 40.0%
ATTTAGCCAACCCCATTTAG+TGG + chr7_1:79500383-79500402 Msa1041840:intron 40.0%
TTTAGCCAACCCCATTTAGT+GGG + chr7_1:79500384-79500403 Msa1041840:intron 40.0%
AAACCTTACCCCACTAAATG+GGG - chr7_1:79500396-79500415 None:intergenic 40.0%
CAAACCTTACCCCACTAAAT+GGG - chr7_1:79500397-79500416 None:intergenic 40.0%
GTAAGAAGGGCCAATAAAAG+TGG - chr7_1:79500558-79500577 None:intergenic 40.0%
! TTGGCCCTTCTTACTCATTT+TGG + chr7_1:79500564-79500583 Msa1041840:intron 40.0%
! TGGCCCTTCTTACTCATTTT+GGG + chr7_1:79500565-79500584 Msa1041840:intron 40.0%
GACTCCCAAAATGAGTAAGA+AGG - chr7_1:79500572-79500591 None:intergenic 40.0%
! AGTCCTTGAGCTTTATCTGA+TGG + chr7_1:79500588-79500607 Msa1041840:intron 40.0%
ACAAGCAGTAAGGACAACAT+TGG - chr7_1:79500690-79500709 None:intergenic 40.0%
TGCAAACAACACAAGCAGTA+AGG - chr7_1:79500700-79500719 None:intergenic 40.0%
CTACCGAGTTCAGTATTGTT+TGG + chr7_1:79500794-79500813 Msa1041840:intron 40.0%
CAGCCAAACAATACTGAACT+CGG - chr7_1:79500800-79500819 None:intergenic 40.0%
AGTATTGTTTGGCTGAGATG+AGG + chr7_1:79500805-79500824 Msa1041840:intron 40.0%
GATTTGGCTGTCATTCTTCT+AGG + chr7_1:79500988-79501007 Msa1041840:intron 40.0%
GGAGAGAAGTCAACAATGAT+TGG - chr7_1:79501018-79501037 None:intergenic 40.0%
!! TGTTGACTTCTCTCCTGTTA+CGG + chr7_1:79501023-79501042 Msa1041840:CDS 40.0%
GAAGAGAATGTATGCAATCG+AGG + chr7_1:79501075-79501094 Msa1041840:CDS 40.0%
TCATAGTTACGATTTCTCGG+GGG - chr7_1:79501306-79501325 None:intergenic 40.0%
CTCATAGTTACGATTTCTCG+GGG - chr7_1:79501307-79501326 None:intergenic 40.0%
CCTCATAGTTACGATTTCTC+GGG - chr7_1:79501308-79501327 None:intergenic 40.0%
CCCTCATAGTTACGATTTCT+CGG - chr7_1:79501309-79501328 None:intergenic 40.0%
CCGAGAAATCGTAACTATGA+GGG + chr7_1:79501306-79501325 Msa1041840:CDS 40.0%
CGAGAAATCGTAACTATGAG+GGG + chr7_1:79501307-79501326 Msa1041840:CDS 40.0%
CTTTCTCCTCTGATAGGATT+CGG - chr7_1:79501468-79501487 None:intergenic 40.0%
CTTTCTCTTTCTCCTCTGAT+AGG - chr7_1:79501474-79501493 None:intergenic 40.0%
GGAGAGCTAGAATAGAACAA+TGG + chr7_1:79501505-79501524 Msa1041840:CDS 40.0%
AGTTGGAGATTCTGGTAACA+AGG + chr7_1:79501542-79501561 Msa1041840:CDS 40.0%
TTACAGGGTCTTCTCACTTT+GGG - chr7_1:79501661-79501680 None:intergenic 40.0%
ATTACAGGGTCTTCTCACTT+TGG - chr7_1:79501662-79501681 None:intergenic 40.0%
TGTTCGATGGTAAACTCTGT+TGG + chr7_1:79501840-79501859 Msa1041840:three_prime_UTR 40.0%
AAACTCTGTTGGAGATTACC+TGG + chr7_1:79501851-79501870 Msa1041840:three_prime_UTR 40.0%
AACTCTGTTGGAGATTACCT+GGG + chr7_1:79501852-79501871 Msa1041840:three_prime_UTR 40.0%
AGATTACCTGGGTGAAATAG+AGG + chr7_1:79501863-79501882 Msa1041840:three_prime_UTR 40.0%
GATTACCTGGGTGAAATAGA+GGG + chr7_1:79501864-79501883 Msa1041840:three_prime_UTR 40.0%
GGCGAAACCCTAATAATCGA+TGG + chr7_1:79499151-79499170 Msa1041840:exon 45.0%
! TGCTCCGCCATCGATTATTA+GGG - chr7_1:79499161-79499180 None:intergenic 45.0%
! ATGCTCCGCCATCGATTATT+AGG - chr7_1:79499162-79499181 None:intergenic 45.0%
GCTCCGATCTTGAAGTAGAA+TGG - chr7_1:79499227-79499246 None:intergenic 45.0%
AAGATCGGAGCTTGTAGACA+TGG + chr7_1:79499236-79499255 Msa1041840:CDS 45.0%
TGGTATGAAGACGAGAACAG+CGG - chr7_1:79499265-79499284 None:intergenic 45.0%
!! AGTAGGACTAATGGTGGGTT+TGG - chr7_1:79499285-79499304 None:intergenic 45.0%
!! TCAAGAGATTCAGGTTGAGG+TGG - chr7_1:79499401-79499420 None:intergenic 45.0%
TTTGAGGAGCTGAGCAAGTA+TGG + chr7_1:79499547-79499566 Msa1041840:CDS 45.0%
AGATGGAGCAAACTAGGCTT+AGG + chr7_1:79500173-79500192 Msa1041840:intron 45.0%
CAAACTAGGCTTAGGTGGTT+TGG + chr7_1:79500181-79500200 Msa1041840:intron 45.0%
AGTGAGGAGAGTCAATCAGA+TGG + chr7_1:79500234-79500253 Msa1041840:intron 45.0%
AGGAGAGTCAATCAGATGGA+AGG + chr7_1:79500238-79500257 Msa1041840:intron 45.0%
GGTAGTCAAATCACTAGAGG+CGG + chr7_1:79500259-79500278 Msa1041840:intron 45.0%
! CGATCCAACTCATTAGTCTC+TGG - chr7_1:79500322-79500341 None:intergenic 45.0%
TTAGCCAACCCCATTTAGTG+GGG + chr7_1:79500385-79500404 Msa1041840:intron 45.0%
CCAAACCTTACCCCACTAAA+TGG - chr7_1:79500398-79500417 None:intergenic 45.0%
CCATTTAGTGGGGTAAGGTT+TGG + chr7_1:79500395-79500414 Msa1041840:intron 45.0%
TTGGACAGTAGCAGATGTAC+TGG - chr7_1:79500671-79500690 None:intergenic 45.0%
TACAATTGTGGGTACCAGGA+AGG - chr7_1:79500745-79500764 None:intergenic 45.0%
AATGTCAGTAGCAATGAGCG+AGG - chr7_1:79500966-79500985 None:intergenic 45.0%
GCTTCTCGAAAATCCGTAAC+AGG - chr7_1:79501039-79501058 None:intergenic 45.0%
GAGAATGTATGCAATCGAGG+TGG + chr7_1:79501078-79501097 Msa1041840:CDS 45.0%
TTGGAAGAAGTAGTAGGCGT+TGG + chr7_1:79501250-79501269 Msa1041840:CDS 45.0%
CATAGTTACGATTTCTCGGG+GGG - chr7_1:79501305-79501324 None:intergenic 45.0%
CCCGAGAAATCGTAACTATG+AGG + chr7_1:79501305-79501324 Msa1041840:CDS 45.0%
AATCCCTTCTACCAGAACCA+CGG - chr7_1:79501347-79501366 None:intergenic 45.0%
!! TGGTTCTGGTAGAAGGGATT+TGG + chr7_1:79501347-79501366 Msa1041840:CDS 45.0%
AGAACAATGGAACAGGGAGA+AGG + chr7_1:79501518-79501537 Msa1041840:CDS 45.0%
GAGAAGGAAGTTGGAGATTC+TGG + chr7_1:79501534-79501553 Msa1041840:CDS 45.0%
!!! CAGACTCGCTGCCATTTTTT+AGG - chr7_1:79501602-79501621 None:intergenic 45.0%
CTAAAAAATGGCAGCGAGTC+TGG + chr7_1:79501600-79501619 Msa1041840:CDS 45.0%
AGTTAACGGAAGAAGTGAGG+AGG + chr7_1:79502000-79502019 Msa1041840:three_prime_UTR 45.0%
!!! TTGATTTTTTTTTTTTTTTT+AGG + chr7_1:79499507-79499526 Msa1041840:intron 5.0%
TGAGGAGGTTGAGGTTGTTG+AGG - chr7_1:79499377-79499396 None:intergenic 50.0%
!! GATTCAGGTTGAGGTGGTTG+AGG - chr7_1:79499395-79499414 None:intergenic 50.0%
!! GGGTCAAGAGATTCAGGTTG+AGG - chr7_1:79499404-79499423 None:intergenic 50.0%
TGGAGCAAACTAGGCTTAGG+TGG + chr7_1:79500176-79500195 Msa1041840:intron 50.0%
AGTCAAATCACTAGAGGCGG+AGG + chr7_1:79500262-79500281 Msa1041840:intron 50.0%
CTTACCCCACTAAATGGGGT+TGG - chr7_1:79500392-79500411 None:intergenic 50.0%
CAACCCCATTTAGTGGGGTA+AGG + chr7_1:79500390-79500409 Msa1041840:intron 50.0%
ACCTTGTGCTCTGTCACACA+TGG + chr7_1:79500629-79500648 Msa1041840:intron 50.0%
ACCATGTGTGACAGAGCACA+AGG - chr7_1:79500633-79500652 None:intergenic 50.0%
!! TATGAGGGGCGTTCGTATTC+TGG + chr7_1:79501321-79501340 Msa1041840:CDS 50.0%
CTGGTAGAAGGGATTTGGAC+AGG + chr7_1:79501352-79501371 Msa1041840:CDS 50.0%
AGGGATTTGGACAGGTCTCA+TGG + chr7_1:79501360-79501379 Msa1041840:CDS 50.0%
! GCTTCTTGGCCTTCTACCAT+GGG - chr7_1:79501388-79501407 None:intergenic 50.0%
TTCCTCTATGCCGAGGACTA+CGG - chr7_1:79501410-79501429 None:intergenic 50.0%
AAGGCGGAGTAGAAGTCCAA+TGG + chr7_1:79501428-79501447 Msa1041840:CDS 50.0%
AGGCGGAGTAGAAGTCCAAT+GGG + chr7_1:79501429-79501448 Msa1041840:CDS 50.0%
GAAGTCCAATGGGAAGAGAC+AGG + chr7_1:79501439-79501458 Msa1041840:CDS 50.0%
AGGAGTCCGAATCCTATCAG+AGG + chr7_1:79501459-79501478 Msa1041840:CDS 50.0%
TGGAACAGGGAGAAGGAAGT+TGG + chr7_1:79501525-79501544 Msa1041840:CDS 50.0%
GAAGAGGCGGGCCTAAAAAA+TGG + chr7_1:79501588-79501607 Msa1041840:CDS 50.0%
GAAAGGGGTTCGTGAGAGAG+TGG + chr7_1:79499130-79499149 Msa1041840:five_prime_UTR 55.0%
TGAGGTGGTTGAGGAGGTTG+AGG - chr7_1:79499386-79499405 None:intergenic 55.0%
!! TCAGGTTGAGGTGGTTGAGG+AGG - chr7_1:79499392-79499411 None:intergenic 55.0%
!! AGGCGTTGGAATGACCGTAG+TGG + chr7_1:79501264-79501283 Msa1041840:CDS 55.0%
! ACCGTAGTGGAAGCAGAAGC+CGG + chr7_1:79501277-79501296 Msa1041840:CDS 55.0%
TCCGGCTTCTGCTTCCACTA+CGG - chr7_1:79501281-79501300 None:intergenic 55.0%
TCGTATTCTGGCCGTGGTTC+TGG + chr7_1:79501333-79501352 Msa1041840:CDS 55.0%
!! TGGCCGTGGTTCTGGTAGAA+GGG + chr7_1:79501341-79501360 Msa1041840:CDS 55.0%
CTCATGGCTCCCATGGTAGA+AGG + chr7_1:79501376-79501395 Msa1041840:CDS 55.0%
! GGCTTCTTGGCCTTCTACCA+TGG - chr7_1:79501389-79501408 None:intergenic 55.0%
GTAGTCCTCGGCATAGAGGA+AGG + chr7_1:79501409-79501428 Msa1041840:CDS 55.0%
GGACTCCTGTCTCTTCCCAT+TGG - chr7_1:79501447-79501466 None:intergenic 55.0%
CGGTTCCCTCTATTTCACCC+AGG - chr7_1:79501872-79501891 None:intergenic 55.0%
TACGATTTCTCGGGGGGCTC+CGG - chr7_1:79501299-79501318 None:intergenic 60.0%
!! CTGGCCGTGGTTCTGGTAGA+AGG + chr7_1:79501340-79501359 Msa1041840:CDS 60.0%
GACAGGTCTCATGGCTCCCA+TGG + chr7_1:79501369-79501388 Msa1041840:CDS 60.0%
GGCCAAGAAGCCGTAGTCCT+CGG + chr7_1:79501397-79501416 Msa1041840:CDS 60.0%
TGCCGAGGACTACGGCTTCT+TGG - chr7_1:79501402-79501421 None:intergenic 60.0%
AGCCGTAGTCCTCGGCATAG+AGG + chr7_1:79501405-79501424 Msa1041840:CDS 60.0%
GTCCTCGGCATAGAGGAAGG+CGG + chr7_1:79501412-79501431 Msa1041840:CDS 60.0%
GGGCGTTCGTATTCTGGCCG+TGG + chr7_1:79501327-79501346 Msa1041840:CDS 65.0%
CTCCGCCTTCCTCTATGCCG+AGG - chr7_1:79501417-79501436 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 79499083 79502057 79499083 ID=Msa1041840;Name=Msa1041840
chr7_1 mRNA 79499083 79502057 79499083 ID=Msa1041840-mRNA-1;Parent=Msa1041840;Name=Msa1041840-mRNA-1;_AED=0.19;_eAED=0.19;_QI=87|1|1|1|1|1|5|419|327
chr7_1 exon 79499083 79499448 79499083 ID=Msa1041840-mRNA-1:exon:21509;Parent=Msa1041840-mRNA-1
chr7_1 exon 79499529 79499615 79499529 ID=Msa1041840-mRNA-1:exon:21510;Parent=Msa1041840-mRNA-1
chr7_1 exon 79499710 79499791 79499710 ID=Msa1041840-mRNA-1:exon:21511;Parent=Msa1041840-mRNA-1
chr7_1 exon 79501010 79501136 79501010 ID=Msa1041840-mRNA-1:exon:21512;Parent=Msa1041840-mRNA-1
chr7_1 exon 79501230 79502057 79501230 ID=Msa1041840-mRNA-1:exon:21513;Parent=Msa1041840-mRNA-1
chr7_1 five_prime_UTR 79499083 79499169 79499083 ID=Msa1041840-mRNA-1:five_prime_utr;Parent=Msa1041840-mRNA-1
chr7_1 CDS 79499170 79499448 79499170 ID=Msa1041840-mRNA-1:cds;Parent=Msa1041840-mRNA-1
chr7_1 CDS 79499529 79499615 79499529 ID=Msa1041840-mRNA-1:cds;Parent=Msa1041840-mRNA-1
chr7_1 CDS 79499710 79499791 79499710 ID=Msa1041840-mRNA-1:cds;Parent=Msa1041840-mRNA-1
chr7_1 CDS 79501010 79501136 79501010 ID=Msa1041840-mRNA-1:cds;Parent=Msa1041840-mRNA-1
chr7_1 CDS 79501230 79501638 79501230 ID=Msa1041840-mRNA-1:cds;Parent=Msa1041840-mRNA-1
chr7_1 three_prime_UTR 79501639 79502057 79501639 ID=Msa1041840-mRNA-1:three_prime_utr;Parent=Msa1041840-mRNA-1
Gene Sequence

>Msa1041840

ATGGCGGAGCATTTAGCATCGATATTCGGAACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGAGCTTGTAGACATGGTGACCGCTGTTCTCGTCTTCATACCAAACCCACCATTAGTCCTACTCTTGTTCTCTCCAACATGTATCAACGTCCTGATATGAACCTTAACTTTATCAATCCTACTCCTAATCAACCTCAACAACCTCAACCTCCTCAACCACCTCAACCTGAATCTCTTGACCCTGATAAACTCCAAGAACACTTCGATGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGTCAAATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGACCATGCTGCTAATGCTCTTATGAATCTCACTGGAAGATTTTATTCAGGCCGACCAATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTACGAAGAGAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGAGGAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCCCCGAGAAATCGTAACTATGAGGGGCGTTCGTATTCTGGCCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCTCCCATGGTAGAAGGCCAAGAAGCCGTAGTCCTCGGCATAGAGGAAGGCGGAGTAGAAGTCCAATGGGAAGAGACAGGAGTCCGAATCCTATCAGAGGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAGGAAGTTGGAGATTCTGGTAACAAGGACAATAAGAGTAACAATGATTATGAAGAGGCGGGCCTAAAAAATGGCAGCGAGTCTGGCAATCATCAGACATAG
Protein sequence

>Msa1041840

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSRSPMGRDRSPNPIRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSESGNHQT*