AlfalfaGEDB | Msa1167350

M. sativa cultivar zhongmu-4 / Msa1167350

KEGG: K12836
GO: GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167350	XP_013450093.1	98.777	327	4	0	1	327	1	327	0.0	670

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167350	sp\|Q9FMY5\|U2AFB_ARATH	64.026	303	83	5	1	298	1	282	2.74e-114	335

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167350	A0A072U424	98.777	327	4	0	1	327	1	327	0.0	670

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094600	Msa1167350	0.806961	6.380078e-50	-8.615850e-47
Msa0709390	Msa1167350	0.978409	9.146580e-146	-8.615850e-47
Msa0880030	Msa1167350	0.900699	5.638013e-78	-8.615850e-47
Msa1041840	Msa1167350	0.976110	3.334368e-141	-8.615850e-47
Msa1124970	Msa1167350	0.986776	6.248756e-168	-8.615850e-47
Msa1167350	Msa1423040	0.987035	7.908531e-169	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167350	MtrunA17_Chr7g0265751	98.777	327	4	0	1	327	1	327	0.0	670
Msa1167350	MtrunA17_Chr2g0320801	60.377	318	87	4	1	305	1	292	8.14e-119	345
Msa1167350	MtrunA17_Chr1g0162821	72.362	199	41	2	1	199	1	185	1.26e-106	312
Msa1167350	MtrunA17_Chr2g0276901	37.755	98	58	1	92	186	28	125	5.28e-18	84.7
Msa1167350	MtrunA17_Chr2g0276891	55.102	49	22	0	9	57	184	232	2.88e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1167350	AT5G42820.1	64.026	303	83	5	1	298	1	282	2.79e-115	335
Msa1167350	AT5G42820.2	64.026	303	83	5	1	298	1	282	2.79e-115	335
Msa1167350	AT1G27650.1	65.461	304	74	7	1	292	1	285	5.07e-113	330
Msa1167350	AT1G27650.2	59.843	254	71	7	51	292	1	235	1.92e-73	227
Msa1167350	AT1G10320.2	34.426	183	97	3	9	186	228	392	1.51e-34	134
Msa1167350	AT1G10320.1	34.426	183	97	3	9	186	237	401	1.69e-34	134
Msa1167350	AT3G44785.1	65.753	73	24	1	1	73	1	72	3.90e-29	107

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Find 124 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACAGCCAACTCAAT+AGG	0.421667	7_4:+59799032	None:intergenic
AAACTCTGTTGGAGATTACC+TGG	0.498335	7_4:-59798898	Msa1167350:three_prime_UTR
AAAGAGAAAGTAGTGTAGAA+AGG	0.483749	7_4:-59799265	Msa1167350:CDS
AACAAGAGTAGGACTAATGG+TGG	0.614682	7_4:+59801426	None:intergenic
AACAATGATTATGAAGAGGC+GGG	0.563713	7_4:-59799173	Msa1167350:CDS
AACATAAATAAATCTCGAAA+GGG	0.429853	7_4:-59801600	Msa1167350:five_prime_UTR
AACTCTGTTGGAGATTACCT+GGG	0.633510	7_4:-59798897	Msa1167350:three_prime_UTR
AAGATCGGAGCTTGTAGACA+TGG	0.618937	7_4:-59801478	Msa1167350:CDS
AAGGCGGAGTAGAAGTCCAA+TGG	0.574467	7_4:-59799321	Msa1167350:CDS
AAGTGTTCTTGGAGTTTATC+AGG	0.235787	7_4:+59801292	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGTAGGATTGATAAAGTTA+AGG	+	chr7_4:59798977-59798996	None:intergenic	30.0%
TGGTACATGATAGAACATTA+TGG	-	chr7_4:59799940-59799959	Msa1167350:intron	30.0%
TGAATCCTTTGTGTAACTAA+AGG	-	chr7_4:59800036-59800055	Msa1167350:intron	30.0%
TATTGCCTTTAGTTACACAA+AGG	+	chr7_4:59800044-59800063	None:intergenic	30.0%
CAATAAAAGTGGGTACAATA+AGG	+	chr7_4:59800140-59800159	None:intergenic	30.0%
GATTATTTGGAAGAAGTAGT+AGG	-	chr7_4:59800840-59800859	Msa1167350:intron	30.0%
AAAGAGAAAGTAGTGTAGAA+AGG	-	chr7_4:59801080-59801099	Msa1167350:intron	30.0%
TAGAATAGAACAATGGAACA+GGG	-	chr7_4:59801108-59801127	Msa1167350:intron	30.0%
GAGTAACAATGATTATGAAG+AGG	-	chr7_4:59801168-59801187	Msa1167350:CDS	30.0%
TAACAATGATTATGAAGAGG+CGG	-	chr7_4:59801171-59801190	Msa1167350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	59798714	59801653	59798714	ID=Msa1167350;Name=Msa1167350
chr7_4	mRNA	59798714	59801653	59798714	ID=Msa1167350-mRNA-1;Parent=Msa1167350;Name=Msa1167350-mRNA-1;_AED=0.17;_eAED=0.17;_QI=87\|1\|1\|1\|1\|1\|5\|419\|327
chr7_4	exon	59798714	59799541	59798714	ID=Msa1167350-mRNA-1:exon:18626;Parent=Msa1167350-mRNA-1
chr7_4	exon	59799635	59799761	59799635	ID=Msa1167350-mRNA-1:exon:18625;Parent=Msa1167350-mRNA-1
chr7_4	exon	59800937	59801018	59800937	ID=Msa1167350-mRNA-1:exon:18624;Parent=Msa1167350-mRNA-1
chr7_4	exon	59801113	59801199	59801113	ID=Msa1167350-mRNA-1:exon:18623;Parent=Msa1167350-mRNA-1
chr7_4	exon	59801288	59801653	59801288	ID=Msa1167350-mRNA-1:exon:18622;Parent=Msa1167350-mRNA-1
chr7_4	five_prime_UTR	59801567	59801653	59801567	ID=Msa1167350-mRNA-1:five_prime_utr;Parent=Msa1167350-mRNA-1
chr7_4	CDS	59801288	59801566	59801288	ID=Msa1167350-mRNA-1:cds;Parent=Msa1167350-mRNA-1
chr7_4	CDS	59801113	59801199	59801113	ID=Msa1167350-mRNA-1:cds;Parent=Msa1167350-mRNA-1
chr7_4	CDS	59800937	59801018	59800937	ID=Msa1167350-mRNA-1:cds;Parent=Msa1167350-mRNA-1
chr7_4	CDS	59799635	59799761	59799635	ID=Msa1167350-mRNA-1:cds;Parent=Msa1167350-mRNA-1
chr7_4	CDS	59799133	59799541	59799133	ID=Msa1167350-mRNA-1:cds;Parent=Msa1167350-mRNA-1
chr7_4	three_prime_UTR	59798714	59799132	59798714	ID=Msa1167350-mRNA-1:three_prime_utr;Parent=Msa1167350-mRNA-1

Gene Sequence

>Msa1167350

ATGGCGGAGCATTTAGCATCGATATTCGGAACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGAGCTTGTAGACATGGTGACCGCTGTTCTCGTCTTCATACCAAACCCACCATTAGTCCTACTCTTGTTCTCTCCAACATGTATCAACGTCCTGATATGAACCTTAACTTTATCAATCCTACTCCTAATCAACCTCAACAACCTCAACCTCCTCAACCACCTCAACCTGAATCTCTTGACCCTGATAAACTCCAAGAACACTTCGATGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGTCAAATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGACCATGCTGCTAATGCTCTTATGAATCTCACTGGAAGATTTTATTCAGGCCGACCAATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTACGAAGAGAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGAGGAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCCCCGAGAAATCGTAACTATGAGGGGCGTTCGTATTCTGGCCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCTCCCATGGTAGAAGGCCAAGAAGCCGTAGTCCTCGGCATAGAGGAAGGCGGAGTAGAAGTCCAATGGGAAGAGACAGGAGTCCGAATCCTATCAGAGGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAGGAAGTTGGAGATTCTGGTAACAAGGACAATAAGAGTAACAATGATTATGAAGAGGCGGGCCTAAAAAATGGCAGCGAGTCTGGCAATCATCAGACATAG

Protein sequence

>Msa1167350

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSRSPMGRDRSPNPIRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSESGNHQT*