AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1049300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049300 MtrunA17_Chr7g0218101 98.625 291 4 0 1 291 1 291 0.0 592
Msa1049300 MtrunA17_Chr3g0077201 44.939 247 121 7 49 288 83 321 9.20e-58 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1049300 AT3G29240.1 61.218 312 97 6 1 288 1 312 3.97e-122 352
Msa1049300 AT3G29240.2 61.218 312 97 6 1 288 1 312 3.97e-122 352
Msa1049300 AT1G33780.1 46.552 232 105 4 59 286 95 311 3.07e-56 184
Msa1049300 AT3G19780.2 32.258 155 87 5 114 259 903 1048 4.50e-12 67.0
Msa1049300 AT3G19780.1 32.258 155 87 5 114 259 904 1049 4.58e-12 67.0
Msa1049300 AT3G19780.4 32.258 155 87 5 114 259 712 857 5.01e-12 66.6
Msa1049300 AT3G19780.3 32.258 155 87 5 114 259 694 839 5.92e-12 66.6

Find 120 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATAGTCCTTTGTATTT+TGG 0.063786 7_2:+12476153 Msa1049300:CDS
ATTAATAAACAACCTCTTTC+AGG 0.170100 7_2:-12475970 None:intergenic
TTCAAGTTACTACTCAAATT+AGG 0.182399 7_2:-12476870 None:intergenic
TTCGACTATGTTTGAATTGA+TGG 0.204762 7_2:+12476742 Msa1049300:three_prime_UTR
AACAATTGAGAGATGAAATT+AGG 0.215233 7_2:+12476376 Msa1049300:CDS
ATGTTGGAATTGTTGGGCTC+TGG 0.270864 7_2:+12476451 Msa1049300:CDS
TTGGGGAATGTTGGAATTGT+TGG 0.278049 7_2:+12476444 Msa1049300:CDS
ATGAAATTAGGGATGGTTAT+TGG 0.278275 7_2:+12476388 Msa1049300:CDS
GGACGAAGTTCTCGGGCTTA+TGG 0.278397 7_2:+12476473 Msa1049300:CDS
TTTCCCACCACATCATCTTT+TGG 0.289279 7_2:-12476210 None:intergenic
ACAAAGTTACTCAAATAATA+TGG 0.298640 7_2:+12474846 Msa1049300:exon
TCAAGTTACTACTCAAATTA+GGG 0.318663 7_2:-12476869 None:intergenic
GTGATGAAGGGTTTGTATTA+TGG 0.321373 7_2:+12476252 Msa1049300:CDS
TAACTTGAAAACAACTTGTT+TGG 0.324966 7_2:+12476884 Msa1049300:three_prime_UTR
ACAATTGAGAGATGAAATTA+GGG 0.325075 7_2:+12476377 Msa1049300:CDS
AGTCCAAGTGTTGTTGATTT+GGG 0.333914 7_2:+12476426 Msa1049300:CDS
ATGATCCCTGATGGGCCTAT+TGG 0.337536 7_2:-12476060 None:intergenic
TGATCTTGGTGAAAGAACTA+TGG 0.339365 7_2:-12474885 None:intergenic
AAGATCGCCAATCGGTGTTA+AGG 0.343777 7_2:-12475813 None:intergenic
TAGTCCAAGTGTTGTTGATT+TGG 0.347343 7_2:+12476425 Msa1049300:CDS
TGGGGAATGTTGGAATTGTT+GGG 0.353274 7_2:+12476445 Msa1049300:CDS
GGGCTCTGGGACGAAGTTCT+CGG 0.353820 7_2:+12476465 Msa1049300:CDS
GACGAAGTTCTCGGGCTTAT+GGG 0.359750 7_2:+12476474 Msa1049300:CDS
TCTTCATCTCATCCAAAGTT+TGG 0.364734 7_2:-12474703 None:intergenic
ATCAACTGCATTTGATGTAA+TGG 0.365972 7_2:+12476122 Msa1049300:CDS
TAATCACAATTGGTGACAAA+TGG 0.368700 7_2:+12475929 Msa1049300:CDS
TATTAAAATGTATGGGCTAA+TGG 0.370968 7_2:-12474676 None:intergenic
GTCGCTGAAGAAAGGAATTC+GGG 0.377492 7_2:-12475874 None:intergenic
AGTCGCTGAAGAAAGGAATT+CGG 0.379213 7_2:-12475875 None:intergenic
TTGGTGTGTATTAAAATGTA+TGG 0.399837 7_2:-12474684 None:intergenic
GCGATCTTTCCGTGCAAAAC+TGG 0.403195 7_2:+12475828 Msa1049300:CDS
TGTGGGTCTGGCTGCTGAAA+TGG 0.406195 7_2:+12476287 Msa1049300:CDS
TGATCCCTGATGGGCCTATT+GGG 0.409481 7_2:-12476059 None:intergenic
TGTTGGAATTGTTGGGCTCT+GGG 0.418680 7_2:+12476452 Msa1049300:CDS
CTTTGATGGGTATTGTGGGT+GGG 0.424635 7_2:+12476347 Msa1049300:CDS
CAATTCAATTCAAGAAAAGT+TGG 0.426906 7_2:+12474949 Msa1049300:CDS
AACAACCTCTTTCAGGCTCA+TGG 0.428547 7_2:-12475963 None:intergenic
GGATGATCCACAACCGTGTC+TGG 0.428711 7_2:-12475901 None:intergenic
AGTTTGGTGGAATAAGTATA+TGG 0.430604 7_2:-12474784 None:intergenic
GGCTCTGGGACGAAGTTCTC+GGG 0.430974 7_2:+12476466 Msa1049300:CDS
AATAAGCTTGTAGAAGATCT+AGG 0.431841 7_2:+12476812 Msa1049300:three_prime_UTR
GGGCACTAGTATCAACCCTT+AGG 0.432949 7_2:-12476849 None:intergenic
TAGAGATCCACCTCTGATCT+TGG 0.438298 7_2:-12474899 None:intergenic
AATGGATATGCTTTGACAAA+TGG 0.441277 7_2:-12474658 None:intergenic
TCAACTGCATTTGATGTAAT+GGG 0.441472 7_2:+12476123 Msa1049300:CDS
AGATTCTTTGATGGGTATTG+TGG 0.441919 7_2:+12476342 Msa1049300:CDS
TTGTCACCAATTGTGATTAG+TGG 0.444671 7_2:-12475925 None:intergenic
GATAAAACAATATTTATGTT+GGG 0.448702 7_2:+12476601 Msa1049300:three_prime_UTR
ATGTTTGAATTGATGGCATA+TGG 0.452611 7_2:+12476749 Msa1049300:three_prime_UTR
ATATGATGAGAGATCAAGTT+TGG 0.453059 7_2:-12474800 None:intergenic
GATTCTTTGATGGGTATTGT+GGG 0.454997 7_2:+12476343 Msa1049300:CDS
TTGTTTGGAAGCTTCTCAAT+TGG 0.455288 7_2:+12476899 Msa1049300:three_prime_UTR
AGATAAAACAATATTTATGT+TGG 0.456439 7_2:+12476600 Msa1049300:three_prime_UTR
GAAAAGTTGGGCTCTAATCA+TGG 0.457594 7_2:+12476675 Msa1049300:three_prime_UTR
AGATCGCCAATCGGTGTTAA+GGG 0.458925 7_2:-12475812 None:intergenic
AACATGAGGATGGGTAAAAC+CGG 0.459746 7_2:-12476534 None:intergenic
CGCCAATCGGTGTTAAGGGT+TGG 0.469028 7_2:-12475808 None:intergenic
GGTGTAGTAGCAAGACCCTA+AGG 0.472149 7_2:+12476833 Msa1049300:three_prime_UTR
TACTAAAGAAAGTGTGGGTC+TGG 0.473328 7_2:+12476275 Msa1049300:CDS
TTCCAAAGTGTTTGTGTGGA+TGG 0.480234 7_2:+12476652 Msa1049300:three_prime_UTR
CATCCACCACTAATCACAAT+TGG 0.481123 7_2:+12475919 Msa1049300:CDS
TCTTTGATGGGTATTGTGGG+TGG 0.484182 7_2:+12476346 Msa1049300:CDS
GTTGTTGATTTGGGGAATGT+TGG 0.484466 7_2:+12476435 Msa1049300:CDS
AAGCTTCTCAATTGGCAAGC+AGG 0.489095 7_2:+12476907 Msa1049300:three_prime_UTR
TTGGGCCGTTTGATAAAAGA+AGG 0.489401 7_2:-12476041 None:intergenic
AATCACAATTGGTGACAAAT+GGG 0.489815 7_2:+12475930 Msa1049300:CDS
TTTGTGTGGATGGGAAAAGT+TGG 0.490470 7_2:+12476662 Msa1049300:three_prime_UTR
GGGTTTAAGTAATTGTTCTC+CGG 0.491442 7_2:-12475854 None:intergenic
TAGCAACAGAAAAGCTTGAT+GGG 0.501175 7_2:+12475992 Msa1049300:CDS
CTGGATTAGTCGCTGAAGAA+AGG 0.504322 7_2:-12475882 None:intergenic
TTGTGTGGATGGGAAAAGTT+GGG 0.505429 7_2:+12476663 Msa1049300:three_prime_UTR
ATAGCAACAGAAAAGCTTGA+TGG 0.509500 7_2:+12475991 Msa1049300:CDS
TCCCATCCACACAAACACTT+TGG 0.512200 7_2:-12476654 None:intergenic
TTCTCGGGCTTATGGGCAAA+AGG 0.513225 7_2:+12476481 Msa1049300:CDS
AACTTACATGATACATGAAA+CGG 0.515156 7_2:-12474976 None:intergenic
TGCACGGAAAGATCGCCAAT+CGG 0.515533 7_2:-12475821 None:intergenic
TCTTTGATAGACATCAAAGA+TGG 0.519470 7_2:-12476093 None:intergenic
AACCAACCCTTAACACCGAT+TGG 0.525116 7_2:+12475806 Msa1049300:CDS
AAGAGGAATGTGGTTGAGGT+TGG 0.527418 7_2:+12476312 Msa1049300:CDS
TTCCCCAAATCAACAACACT+TGG 0.527843 7_2:-12476429 None:intergenic
GATCTTGGTGAAAGAACTAT+GGG 0.534324 7_2:-12474884 None:intergenic
TTCCGTGCAAAACTGGTGGC+CGG 0.536600 7_2:+12475835 Msa1049300:CDS
GGCAAAAGGAAGGTCAAGTA+AGG 0.544362 7_2:+12476495 Msa1049300:CDS
GGCACTAGTATCAACCCTTA+GGG 0.546105 7_2:-12476848 None:intergenic
TTTCGAGGAAACATGAGGAT+GGG 0.547822 7_2:-12476543 None:intergenic
GGTGAAGAGGAATGTGGTTG+AGG 0.554685 7_2:+12476308 Msa1049300:CDS
TCCAAAGTGTTTGTGTGGAT+GGG 0.556055 7_2:+12476653 Msa1049300:three_prime_UTR
TGGGCTCTAATCATGGGTGC+TGG 0.558187 7_2:+12476682 Msa1049300:three_prime_UTR
TGATGAGAGATCAAGTTTGG+TGG 0.559897 7_2:-12474797 None:intergenic
TCACCAATTGTGATTAGTGG+TGG 0.561176 7_2:-12475922 None:intergenic
CTATTGAGTATGATCCCTGA+TGG 0.565216 7_2:-12476069 None:intergenic
ATCTTTCCGTGCAAAACTGG+TGG 0.565955 7_2:+12475831 Msa1049300:CDS
GTAATCCATGAGCCTGAAAG+AGG 0.568190 7_2:+12475958 Msa1049300:CDS
CGGGCTTATGGGCAAAAGGA+AGG 0.575753 7_2:+12476485 Msa1049300:CDS
GTACTTCCAAAGTGTTTGTG+TGG 0.576861 7_2:+12476648 Msa1049300:three_prime_UTR
AAAAGTTGGGCTCTAATCAT+GGG 0.577724 7_2:+12476676 Msa1049300:three_prime_UTR
TATTGAGTATGATCCCTGAT+GGG 0.580509 7_2:-12476068 None:intergenic
TGGTGTGTATTAAAATGTAT+GGG 0.582839 7_2:-12474683 None:intergenic
TCTTTCACCAAGATCAGAGG+TGG 0.589107 7_2:+12474892 Msa1049300:CDS
TTGAGAGATGAAATTAGGGA+TGG 0.595243 7_2:+12476381 Msa1049300:CDS
GACTAATCCAGACACGGTTG+TGG 0.599523 7_2:+12475894 Msa1049300:CDS
TTATGGTACTAAAGAAAGTG+TGG 0.602423 7_2:+12476269 Msa1049300:CDS
AGTTCTTTCACCAAGATCAG+AGG 0.608131 7_2:+12474889 Msa1049300:CDS
GTGTAGTAGCAAGACCCTAA+GGG 0.609005 7_2:+12476834 Msa1049300:three_prime_UTR
TGGCTGCTGAAATGGTGAAG+AGG 0.609923 7_2:+12476295 Msa1049300:CDS
TGCTTTGACAAATGGCACAT+AGG 0.619813 7_2:-12474650 None:intergenic
GTCCAAGTGTTGTTGATTTG+GGG 0.620298 7_2:+12476427 Msa1049300:CDS
GTTGGTTTGTCATCATCCGA+CGG 0.627755 7_2:-12475790 None:intergenic
CATGTCATCATCATCACCGT+CGG 0.628332 7_2:+12475774 Msa1049300:CDS
TATGGTACTAAAGAAAGTGT+GGG 0.628740 7_2:+12476270 Msa1049300:CDS
ACTTTGGAAATATACTTCTG+CGG 0.639728 7_2:+12476577 Msa1049300:three_prime_UTR
ACGGCCCAATAGGCCCATCA+GGG 0.647590 7_2:+12476055 Msa1049300:CDS
ACATGAGGATGGGTAAAACC+GGG 0.648748 7_2:-12476533 None:intergenic
AGCAACAGAAAAGCTTGATG+GGG 0.650228 7_2:+12475993 Msa1049300:CDS
ACATACAAAACACTTCTATG+TGG 0.659206 7_2:+12474732 Msa1049300:five_prime_UTR
GGTGAGTCCAAAAGATGATG+TGG 0.665219 7_2:+12476203 Msa1049300:CDS
GAGTCCAAAAGATGATGTGG+TGG 0.665713 7_2:+12476206 Msa1049300:CDS
TTCAGCGACTAATCCAGACA+CGG 0.668800 7_2:+12475888 Msa1049300:CDS
AGTCCAAAAGATGATGTGGT+GGG 0.719657 7_2:+12476207 Msa1049300:CDS
TGAAATGGTGAAGAGGAATG+TGG 0.729338 7_2:+12476302 Msa1049300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAATATGTGAATT+TGG + chr7_2:12475404-12475423 Msa1049300:intron 10.0%
!! ATATATAAAATATGTGAATT+TGG + chr7_2:12475404-12475423 Msa1049300:intron 10.0%
!!! TATATTGATAATGATACTTT+AGG + chr7_2:12475449-12475468 Msa1049300:intron 15.0%
!!! ATATTGATAATGATACTTTA+GGG + chr7_2:12475450-12475469 Msa1049300:intron 15.0%
!! AGATAAAACAATATTTATGT+TGG + chr7_2:12476600-12476619 Msa1049300:three_prime_UTR 15.0%
!! GATAAAACAATATTTATGTT+GGG + chr7_2:12476601-12476620 Msa1049300:three_prime_UTR 15.0%
!!! TATATTGATAATGATACTTT+AGG + chr7_2:12475449-12475468 Msa1049300:intron 15.0%
!!! ATATTGATAATGATACTTTA+GGG + chr7_2:12475450-12475469 Msa1049300:intron 15.0%
!! AGATAAAACAATATTTATGT+TGG + chr7_2:12476600-12476619 Msa1049300:three_prime_UTR 15.0%
!! GATAAAACAATATTTATGTT+GGG + chr7_2:12476601-12476620 Msa1049300:three_prime_UTR 15.0%
!! ACAAAGTTACTCAAATAATA+TGG + chr7_2:12474846-12474865 Msa1049300:exon 20.0%
!!! TTGTTGATGAGAAATTTTTT+TGG - chr7_2:12474932-12474951 None:intergenic 20.0%
!! TATAATTTAGAAGCTTAGTT+GGG - chr7_2:12475363-12475382 None:intergenic 20.0%
!! ATATAATTTAGAAGCTTAGT+TGG - chr7_2:12475364-12475383 None:intergenic 20.0%
!!! ATTATATTGATTGTACATTC+AGG + chr7_2:12475473-12475492 Msa1049300:intron 20.0%
!! TAAAAAACCGAATTTCTATA+TGG - chr7_2:12475533-12475552 None:intergenic 20.0%
!! ACAAAGTTACTCAAATAATA+TGG + chr7_2:12474846-12474865 Msa1049300:exon 20.0%
!!! TTGTTGATGAGAAATTTTTT+TGG - chr7_2:12474932-12474951 None:intergenic 20.0%
!! TATAATTTAGAAGCTTAGTT+GGG - chr7_2:12475363-12475382 None:intergenic 20.0%
!! ATATAATTTAGAAGCTTAGT+TGG - chr7_2:12475364-12475383 None:intergenic 20.0%
!!! ATTATATTGATTGTACATTC+AGG + chr7_2:12475473-12475492 Msa1049300:intron 20.0%
!! TAAAAAACCGAATTTCTATA+TGG - chr7_2:12475533-12475552 None:intergenic 20.0%
!! TATTAAAATGTATGGGCTAA+TGG - chr7_2:12474679-12474698 None:intergenic 25.0%
! TGGTGTGTATTAAAATGTAT+GGG - chr7_2:12474686-12474705 None:intergenic 25.0%
! TTGGTGTGTATTAAAATGTA+TGG - chr7_2:12474687-12474706 None:intergenic 25.0%
!! TTTTAATACACACCAAACTT+TGG + chr7_2:12474691-12474710 Msa1049300:five_prime_UTR 25.0%
! CAATTCAATTCAAGAAAAGT+TGG + chr7_2:12474949-12474968 Msa1049300:CDS 25.0%
! AACTTACATGATACATGAAA+CGG - chr7_2:12474979-12474998 None:intergenic 25.0%
! AAACAATTGTAGTGAAATAG+AGG + chr7_2:12475101-12475120 Msa1049300:intron 25.0%
! ATAATTTAGAAGCTTAGTTG+GGG - chr7_2:12475362-12475381 None:intergenic 25.0%
! TGTTGTACCATATAGAAATT+CGG + chr7_2:12475523-12475542 Msa1049300:intron 25.0%
! ATTAATAAACAACCTCTTTC+AGG - chr7_2:12475973-12475992 None:intergenic 25.0%
!! TCTAATAGTCCTTTGTATTT+TGG + chr7_2:12476153-12476172 Msa1049300:CDS 25.0%
!! CTAATAGTCCTTTGTATTTT+GGG + chr7_2:12476154-12476173 Msa1049300:CDS 25.0%
!! TAATAGTCCTTTGTATTTTG+GGG + chr7_2:12476155-12476174 Msa1049300:CDS 25.0%
!! GTGATTTTAGATTCTTTGAT+GGG + chr7_2:12476334-12476353 Msa1049300:CDS 25.0%
! AACAATTGAGAGATGAAATT+AGG + chr7_2:12476376-12476395 Msa1049300:CDS 25.0%
! ACAATTGAGAGATGAAATTA+GGG + chr7_2:12476377-12476396 Msa1049300:CDS 25.0%
!! AAGTCATATATGATTTTTCG+AGG - chr7_2:12476561-12476580 None:intergenic 25.0%
! CGAAAAATCATATATGACTT+TGG + chr7_2:12476561-12476580 Msa1049300:three_prime_UTR 25.0%
! TCAAGTTACTACTCAAATTA+GGG - chr7_2:12476872-12476891 None:intergenic 25.0%
!! TTCAAGTTACTACTCAAATT+AGG - chr7_2:12476873-12476892 None:intergenic 25.0%
!! TAACTTGAAAACAACTTGTT+TGG + chr7_2:12476884-12476903 Msa1049300:three_prime_UTR 25.0%
!! TATTAAAATGTATGGGCTAA+TGG - chr7_2:12474679-12474698 None:intergenic 25.0%
! TGGTGTGTATTAAAATGTAT+GGG - chr7_2:12474686-12474705 None:intergenic 25.0%
! TTGGTGTGTATTAAAATGTA+TGG - chr7_2:12474687-12474706 None:intergenic 25.0%
!! TTTTAATACACACCAAACTT+TGG + chr7_2:12474691-12474710 Msa1049300:five_prime_UTR 25.0%
! CAATTCAATTCAAGAAAAGT+TGG + chr7_2:12474949-12474968 Msa1049300:CDS 25.0%
! AACTTACATGATACATGAAA+CGG - chr7_2:12474979-12474998 None:intergenic 25.0%
! AAACAATTGTAGTGAAATAG+AGG + chr7_2:12475101-12475120 Msa1049300:intron 25.0%
! ATAATTTAGAAGCTTAGTTG+GGG - chr7_2:12475362-12475381 None:intergenic 25.0%
! TGTTGTACCATATAGAAATT+CGG + chr7_2:12475523-12475542 Msa1049300:intron 25.0%
! ATTAATAAACAACCTCTTTC+AGG - chr7_2:12475973-12475992 None:intergenic 25.0%
!! TCTAATAGTCCTTTGTATTT+TGG + chr7_2:12476153-12476172 Msa1049300:CDS 25.0%
!! CTAATAGTCCTTTGTATTTT+GGG + chr7_2:12476154-12476173 Msa1049300:CDS 25.0%
!! TAATAGTCCTTTGTATTTTG+GGG + chr7_2:12476155-12476174 Msa1049300:CDS 25.0%
!! GTGATTTTAGATTCTTTGAT+GGG + chr7_2:12476334-12476353 Msa1049300:CDS 25.0%
! AACAATTGAGAGATGAAATT+AGG + chr7_2:12476376-12476395 Msa1049300:CDS 25.0%
! ACAATTGAGAGATGAAATTA+GGG + chr7_2:12476377-12476396 Msa1049300:CDS 25.0%
!! AAGTCATATATGATTTTTCG+AGG - chr7_2:12476561-12476580 None:intergenic 25.0%
! CGAAAAATCATATATGACTT+TGG + chr7_2:12476561-12476580 Msa1049300:three_prime_UTR 25.0%
! TCAAGTTACTACTCAAATTA+GGG - chr7_2:12476872-12476891 None:intergenic 25.0%
!! TTCAAGTTACTACTCAAATT+AGG - chr7_2:12476873-12476892 None:intergenic 25.0%
!! TAACTTGAAAACAACTTGTT+TGG + chr7_2:12476884-12476903 Msa1049300:three_prime_UTR 25.0%
AATGGATATGCTTTGACAAA+TGG - chr7_2:12474661-12474680 None:intergenic 30.0%
ACATACAAAACACTTCTATG+TGG + chr7_2:12474732-12474751 Msa1049300:five_prime_UTR 30.0%
! AGTTTGGTGGAATAAGTATA+TGG - chr7_2:12474787-12474806 None:intergenic 30.0%
ATATGATGAGAGATCAAGTT+TGG - chr7_2:12474803-12474822 None:intergenic 30.0%
!!! TTTGTTTTTAGATGAGAGTG+AGG - chr7_2:12474831-12474850 None:intergenic 30.0%
ATCTTGATCATAGTGTAAGT+AGG - chr7_2:12475011-12475030 None:intergenic 30.0%
TAATTTAGAAGCTTAGTTGG+GGG - chr7_2:12475361-12475380 None:intergenic 30.0%
!!! GAAATTCGGTTTTTTACCAT+TGG + chr7_2:12475537-12475556 Msa1049300:intron 30.0%
GATGATACTTATTGATCCAA+TGG - chr7_2:12475556-12475575 None:intergenic 30.0%
! TTTTCACCATCTATAAGTCT+CGG - chr7_2:12475598-12475617 None:intergenic 30.0%
! TAATCACAATTGGTGACAAA+TGG + chr7_2:12475929-12475948 Msa1049300:CDS 30.0%
! AATCACAATTGGTGACAAAT+GGG + chr7_2:12475930-12475949 Msa1049300:CDS 30.0%
! GTGATCCTTCTTTTATCAAA+CGG + chr7_2:12476036-12476055 Msa1049300:CDS 30.0%
TCTTTGATAGACATCAAAGA+TGG - chr7_2:12476096-12476115 None:intergenic 30.0%
ATCAACTGCATTTGATGTAA+TGG + chr7_2:12476122-12476141 Msa1049300:CDS 30.0%
TCAACTGCATTTGATGTAAT+GGG + chr7_2:12476123-12476142 Msa1049300:CDS 30.0%
!! AATAGTCCTTTGTATTTTGG+GGG + chr7_2:12476156-12476175 Msa1049300:CDS 30.0%
AAAAACAACCCTTCTTCTAA+AGG - chr7_2:12476183-12476202 None:intergenic 30.0%
!! TTTAGAAGAAGGGTTGTTTT+TGG + chr7_2:12476182-12476201 Msa1049300:CDS 30.0%
! GTTTTTGATGAAGTGATGAA+GGG + chr7_2:12476240-12476259 Msa1049300:CDS 30.0%
TTATGGTACTAAAGAAAGTG+TGG + chr7_2:12476269-12476288 Msa1049300:CDS 30.0%
! TATGGTACTAAAGAAAGTGT+GGG + chr7_2:12476270-12476289 Msa1049300:CDS 30.0%
! GGTGATTTTAGATTCTTTGA+TGG + chr7_2:12476333-12476352 Msa1049300:CDS 30.0%
ATGAAATTAGGGATGGTTAT+TGG + chr7_2:12476388-12476407 Msa1049300:CDS 30.0%
! AAGTAAGGAGCTGTATTTTA+GGG + chr7_2:12476510-12476529 Msa1049300:exon 30.0%
! ACTTTGGAAATATACTTCTG+CGG + chr7_2:12476577-12476596 Msa1049300:three_prime_UTR 30.0%
TTCGACTATGTTTGAATTGA+TGG + chr7_2:12476742-12476761 Msa1049300:three_prime_UTR 30.0%
! ATGTTTGAATTGATGGCATA+TGG + chr7_2:12476749-12476768 Msa1049300:three_prime_UTR 30.0%
AATAAGCTTGTAGAAGATCT+AGG + chr7_2:12476812-12476831 Msa1049300:three_prime_UTR 30.0%
AATGGATATGCTTTGACAAA+TGG - chr7_2:12474661-12474680 None:intergenic 30.0%
ACATACAAAACACTTCTATG+TGG + chr7_2:12474732-12474751 Msa1049300:five_prime_UTR 30.0%
! AGTTTGGTGGAATAAGTATA+TGG - chr7_2:12474787-12474806 None:intergenic 30.0%
ATATGATGAGAGATCAAGTT+TGG - chr7_2:12474803-12474822 None:intergenic 30.0%
!!! TTTGTTTTTAGATGAGAGTG+AGG - chr7_2:12474831-12474850 None:intergenic 30.0%
ATCTTGATCATAGTGTAAGT+AGG - chr7_2:12475011-12475030 None:intergenic 30.0%
TAATTTAGAAGCTTAGTTGG+GGG - chr7_2:12475361-12475380 None:intergenic 30.0%
!!! GAAATTCGGTTTTTTACCAT+TGG + chr7_2:12475537-12475556 Msa1049300:intron 30.0%
GATGATACTTATTGATCCAA+TGG - chr7_2:12475556-12475575 None:intergenic 30.0%
! TTTTCACCATCTATAAGTCT+CGG - chr7_2:12475598-12475617 None:intergenic 30.0%
! TAATCACAATTGGTGACAAA+TGG + chr7_2:12475929-12475948 Msa1049300:CDS 30.0%
! AATCACAATTGGTGACAAAT+GGG + chr7_2:12475930-12475949 Msa1049300:CDS 30.0%
! GTGATCCTTCTTTTATCAAA+CGG + chr7_2:12476036-12476055 Msa1049300:CDS 30.0%
TCTTTGATAGACATCAAAGA+TGG - chr7_2:12476096-12476115 None:intergenic 30.0%
ATCAACTGCATTTGATGTAA+TGG + chr7_2:12476122-12476141 Msa1049300:CDS 30.0%
TCAACTGCATTTGATGTAAT+GGG + chr7_2:12476123-12476142 Msa1049300:CDS 30.0%
!! AATAGTCCTTTGTATTTTGG+GGG + chr7_2:12476156-12476175 Msa1049300:CDS 30.0%
AAAAACAACCCTTCTTCTAA+AGG - chr7_2:12476183-12476202 None:intergenic 30.0%
!! TTTAGAAGAAGGGTTGTTTT+TGG + chr7_2:12476182-12476201 Msa1049300:CDS 30.0%
! GTTTTTGATGAAGTGATGAA+GGG + chr7_2:12476240-12476259 Msa1049300:CDS 30.0%
TTATGGTACTAAAGAAAGTG+TGG + chr7_2:12476269-12476288 Msa1049300:CDS 30.0%
! TATGGTACTAAAGAAAGTGT+GGG + chr7_2:12476270-12476289 Msa1049300:CDS 30.0%
! GGTGATTTTAGATTCTTTGA+TGG + chr7_2:12476333-12476352 Msa1049300:CDS 30.0%
ATGAAATTAGGGATGGTTAT+TGG + chr7_2:12476388-12476407 Msa1049300:CDS 30.0%
! AAGTAAGGAGCTGTATTTTA+GGG + chr7_2:12476510-12476529 Msa1049300:exon 30.0%
! ACTTTGGAAATATACTTCTG+CGG + chr7_2:12476577-12476596 Msa1049300:three_prime_UTR 30.0%
TTCGACTATGTTTGAATTGA+TGG + chr7_2:12476742-12476761 Msa1049300:three_prime_UTR 30.0%
! ATGTTTGAATTGATGGCATA+TGG + chr7_2:12476749-12476768 Msa1049300:three_prime_UTR 30.0%
AATAAGCTTGTAGAAGATCT+AGG + chr7_2:12476812-12476831 Msa1049300:three_prime_UTR 30.0%
TCTTCATCTCATCCAAAGTT+TGG - chr7_2:12474706-12474725 None:intergenic 35.0%
GATCTTGGTGAAAGAACTAT+GGG - chr7_2:12474887-12474906 None:intergenic 35.0%
TGATCTTGGTGAAAGAACTA+TGG - chr7_2:12474888-12474907 None:intergenic 35.0%
ATGCTGATATGTTCTCAAGA+TGG + chr7_2:12475175-12475194 Msa1049300:intron 35.0%
! ATCTTTTGTGATCAAACCAC+AGG + chr7_2:12475745-12475764 Msa1049300:intron 35.0%
GGGTTTAAGTAATTGTTCTC+CGG - chr7_2:12475857-12475876 None:intergenic 35.0%
TTGTCACCAATTGTGATTAG+TGG - chr7_2:12475928-12475947 None:intergenic 35.0%
ATAGCAACAGAAAAGCTTGA+TGG + chr7_2:12475991-12476010 Msa1049300:CDS 35.0%
TAGCAACAGAAAAGCTTGAT+GGG + chr7_2:12475992-12476011 Msa1049300:CDS 35.0%
TATTGAGTATGATCCCTGAT+GGG - chr7_2:12476071-12476090 None:intergenic 35.0%
! GGTTTTTGATGAAGTGATGA+AGG + chr7_2:12476239-12476258 Msa1049300:CDS 35.0%
GTGATGAAGGGTTTGTATTA+TGG + chr7_2:12476252-12476271 Msa1049300:CDS 35.0%
! AGATTCTTTGATGGGTATTG+TGG + chr7_2:12476342-12476361 Msa1049300:CDS 35.0%
! GATTCTTTGATGGGTATTGT+GGG + chr7_2:12476343-12476362 Msa1049300:CDS 35.0%
TTGAGAGATGAAATTAGGGA+TGG + chr7_2:12476381-12476400 Msa1049300:CDS 35.0%
! TAGTCCAAGTGTTGTTGATT+TGG + chr7_2:12476425-12476444 Msa1049300:CDS 35.0%
!! AGTCCAAGTGTTGTTGATTT+GGG + chr7_2:12476426-12476445 Msa1049300:CDS 35.0%
! CAAGTAAGGAGCTGTATTTT+AGG + chr7_2:12476509-12476528 Msa1049300:exon 35.0%
!!! TGATTTTTCGAGGAAACATG+AGG - chr7_2:12476551-12476570 None:intergenic 35.0%
! AAAAGTTGGGCTCTAATCAT+GGG + chr7_2:12476676-12476695 Msa1049300:three_prime_UTR 35.0%
TTGTTTGGAAGCTTCTCAAT+TGG + chr7_2:12476899-12476918 Msa1049300:three_prime_UTR 35.0%
TCTTCATCTCATCCAAAGTT+TGG - chr7_2:12474706-12474725 None:intergenic 35.0%
GATCTTGGTGAAAGAACTAT+GGG - chr7_2:12474887-12474906 None:intergenic 35.0%
TGATCTTGGTGAAAGAACTA+TGG - chr7_2:12474888-12474907 None:intergenic 35.0%
ATGCTGATATGTTCTCAAGA+TGG + chr7_2:12475175-12475194 Msa1049300:intron 35.0%
! ATCTTTTGTGATCAAACCAC+AGG + chr7_2:12475745-12475764 Msa1049300:intron 35.0%
GGGTTTAAGTAATTGTTCTC+CGG - chr7_2:12475857-12475876 None:intergenic 35.0%
TTGTCACCAATTGTGATTAG+TGG - chr7_2:12475928-12475947 None:intergenic 35.0%
ATAGCAACAGAAAAGCTTGA+TGG + chr7_2:12475991-12476010 Msa1049300:CDS 35.0%
TAGCAACAGAAAAGCTTGAT+GGG + chr7_2:12475992-12476011 Msa1049300:CDS 35.0%
TATTGAGTATGATCCCTGAT+GGG - chr7_2:12476071-12476090 None:intergenic 35.0%
! GGTTTTTGATGAAGTGATGA+AGG + chr7_2:12476239-12476258 Msa1049300:CDS 35.0%
GTGATGAAGGGTTTGTATTA+TGG + chr7_2:12476252-12476271 Msa1049300:CDS 35.0%
! AGATTCTTTGATGGGTATTG+TGG + chr7_2:12476342-12476361 Msa1049300:CDS 35.0%
! GATTCTTTGATGGGTATTGT+GGG + chr7_2:12476343-12476362 Msa1049300:CDS 35.0%
TTGAGAGATGAAATTAGGGA+TGG + chr7_2:12476381-12476400 Msa1049300:CDS 35.0%
! TAGTCCAAGTGTTGTTGATT+TGG + chr7_2:12476425-12476444 Msa1049300:CDS 35.0%
!! AGTCCAAGTGTTGTTGATTT+GGG + chr7_2:12476426-12476445 Msa1049300:CDS 35.0%
! CAAGTAAGGAGCTGTATTTT+AGG + chr7_2:12476509-12476528 Msa1049300:exon 35.0%
!!! TGATTTTTCGAGGAAACATG+AGG - chr7_2:12476551-12476570 None:intergenic 35.0%
! AAAAGTTGGGCTCTAATCAT+GGG + chr7_2:12476676-12476695 Msa1049300:three_prime_UTR 35.0%
TTGTTTGGAAGCTTCTCAAT+TGG + chr7_2:12476899-12476918 Msa1049300:three_prime_UTR 35.0%
TGCTTTGACAAATGGCACAT+AGG - chr7_2:12474653-12474672 None:intergenic 40.0%
TGATGAGAGATCAAGTTTGG+TGG - chr7_2:12474800-12474819 None:intergenic 40.0%
AGTTCTTTCACCAAGATCAG+AGG + chr7_2:12474889-12474908 Msa1049300:CDS 40.0%
AGTCGCTGAAGAAAGGAATT+CGG - chr7_2:12475878-12475897 None:intergenic 40.0%
CATCCACCACTAATCACAAT+TGG + chr7_2:12475919-12475938 Msa1049300:CDS 40.0%
TCACCAATTGTGATTAGTGG+TGG - chr7_2:12475925-12475944 None:intergenic 40.0%
AGCAACAGAAAAGCTTGATG+GGG + chr7_2:12475993-12476012 Msa1049300:CDS 40.0%
! GGTTCACATTTTCGAACGAA+CGG + chr7_2:12476014-12476033 Msa1049300:CDS 40.0%
TTGGGCCGTTTGATAAAAGA+AGG - chr7_2:12476044-12476063 None:intergenic 40.0%
! CTTTTATCAAACGGCCCAAT+AGG + chr7_2:12476045-12476064 Msa1049300:CDS 40.0%
CTATTGAGTATGATCCCTGA+TGG - chr7_2:12476072-12476091 None:intergenic 40.0%
AAAGGTCCCCCAAAATACAA+AGG - chr7_2:12476165-12476184 None:intergenic 40.0%
AGTCCAAAAGATGATGTGGT+GGG + chr7_2:12476207-12476226 Msa1049300:CDS 40.0%
! TTTCCCACCACATCATCTTT+TGG - chr7_2:12476213-12476232 None:intergenic 40.0%
! ATGATGTGGTGGGAAAAAGT+GGG + chr7_2:12476217-12476236 Msa1049300:CDS 40.0%
! TACTAAAGAAAGTGTGGGTC+TGG + chr7_2:12476275-12476294 Msa1049300:CDS 40.0%
TGAAATGGTGAAGAGGAATG+TGG + chr7_2:12476302-12476321 Msa1049300:CDS 40.0%
!! GTCCAAGTGTTGTTGATTTG+GGG + chr7_2:12476427-12476446 Msa1049300:CDS 40.0%
TTCCCCAAATCAACAACACT+TGG - chr7_2:12476432-12476451 None:intergenic 40.0%
!! GTTGTTGATTTGGGGAATGT+TGG + chr7_2:12476435-12476454 Msa1049300:CDS 40.0%
TTGGGGAATGTTGGAATTGT+TGG + chr7_2:12476444-12476463 Msa1049300:CDS 40.0%
TGGGGAATGTTGGAATTGTT+GGG + chr7_2:12476445-12476464 Msa1049300:CDS 40.0%
AACATGAGGATGGGTAAAAC+CGG - chr7_2:12476537-12476556 None:intergenic 40.0%
TTTCGAGGAAACATGAGGAT+GGG - chr7_2:12476546-12476565 None:intergenic 40.0%
!! TTTTCGAGGAAACATGAGGA+TGG - chr7_2:12476547-12476566 None:intergenic 40.0%
! GTACTTCCAAAGTGTTTGTG+TGG + chr7_2:12476648-12476667 Msa1049300:three_prime_UTR 40.0%
! TTCCAAAGTGTTTGTGTGGA+TGG + chr7_2:12476652-12476671 Msa1049300:three_prime_UTR 40.0%
! TCCAAAGTGTTTGTGTGGAT+GGG + chr7_2:12476653-12476672 Msa1049300:three_prime_UTR 40.0%
TTTGTGTGGATGGGAAAAGT+TGG + chr7_2:12476662-12476681 Msa1049300:three_prime_UTR 40.0%
TTGTGTGGATGGGAAAAGTT+GGG + chr7_2:12476663-12476682 Msa1049300:three_prime_UTR 40.0%
! GAAAAGTTGGGCTCTAATCA+TGG + chr7_2:12476675-12476694 Msa1049300:three_prime_UTR 40.0%
TGCTTTGACAAATGGCACAT+AGG - chr7_2:12474653-12474672 None:intergenic 40.0%
TGATGAGAGATCAAGTTTGG+TGG - chr7_2:12474800-12474819 None:intergenic 40.0%
AGTTCTTTCACCAAGATCAG+AGG + chr7_2:12474889-12474908 Msa1049300:CDS 40.0%
AGTCGCTGAAGAAAGGAATT+CGG - chr7_2:12475878-12475897 None:intergenic 40.0%
CATCCACCACTAATCACAAT+TGG + chr7_2:12475919-12475938 Msa1049300:CDS 40.0%
TCACCAATTGTGATTAGTGG+TGG - chr7_2:12475925-12475944 None:intergenic 40.0%
AGCAACAGAAAAGCTTGATG+GGG + chr7_2:12475993-12476012 Msa1049300:CDS 40.0%
! GGTTCACATTTTCGAACGAA+CGG + chr7_2:12476014-12476033 Msa1049300:CDS 40.0%
TTGGGCCGTTTGATAAAAGA+AGG - chr7_2:12476044-12476063 None:intergenic 40.0%
! CTTTTATCAAACGGCCCAAT+AGG + chr7_2:12476045-12476064 Msa1049300:CDS 40.0%
CTATTGAGTATGATCCCTGA+TGG - chr7_2:12476072-12476091 None:intergenic 40.0%
AAAGGTCCCCCAAAATACAA+AGG - chr7_2:12476165-12476184 None:intergenic 40.0%
AGTCCAAAAGATGATGTGGT+GGG + chr7_2:12476207-12476226 Msa1049300:CDS 40.0%
! TTTCCCACCACATCATCTTT+TGG - chr7_2:12476213-12476232 None:intergenic 40.0%
! ATGATGTGGTGGGAAAAAGT+GGG + chr7_2:12476217-12476236 Msa1049300:CDS 40.0%
! TACTAAAGAAAGTGTGGGTC+TGG + chr7_2:12476275-12476294 Msa1049300:CDS 40.0%
TGAAATGGTGAAGAGGAATG+TGG + chr7_2:12476302-12476321 Msa1049300:CDS 40.0%
!! GTCCAAGTGTTGTTGATTTG+GGG + chr7_2:12476427-12476446 Msa1049300:CDS 40.0%
TTCCCCAAATCAACAACACT+TGG - chr7_2:12476432-12476451 None:intergenic 40.0%
!! GTTGTTGATTTGGGGAATGT+TGG + chr7_2:12476435-12476454 Msa1049300:CDS 40.0%
TTGGGGAATGTTGGAATTGT+TGG + chr7_2:12476444-12476463 Msa1049300:CDS 40.0%
TGGGGAATGTTGGAATTGTT+GGG + chr7_2:12476445-12476464 Msa1049300:CDS 40.0%
AACATGAGGATGGGTAAAAC+CGG - chr7_2:12476537-12476556 None:intergenic 40.0%
TTTCGAGGAAACATGAGGAT+GGG - chr7_2:12476546-12476565 None:intergenic 40.0%
!! TTTTCGAGGAAACATGAGGA+TGG - chr7_2:12476547-12476566 None:intergenic 40.0%
! GTACTTCCAAAGTGTTTGTG+TGG + chr7_2:12476648-12476667 Msa1049300:three_prime_UTR 40.0%
! TTCCAAAGTGTTTGTGTGGA+TGG + chr7_2:12476652-12476671 Msa1049300:three_prime_UTR 40.0%
! TCCAAAGTGTTTGTGTGGAT+GGG + chr7_2:12476653-12476672 Msa1049300:three_prime_UTR 40.0%
TTTGTGTGGATGGGAAAAGT+TGG + chr7_2:12476662-12476681 Msa1049300:three_prime_UTR 40.0%
TTGTGTGGATGGGAAAAGTT+GGG + chr7_2:12476663-12476682 Msa1049300:three_prime_UTR 40.0%
! GAAAAGTTGGGCTCTAATCA+TGG + chr7_2:12476675-12476694 Msa1049300:three_prime_UTR 40.0%
TCTTTCACCAAGATCAGAGG+TGG + chr7_2:12474892-12474911 Msa1049300:CDS 45.0%
TAGAGATCCACCTCTGATCT+TGG - chr7_2:12474902-12474921 None:intergenic 45.0%
TCAACGCCGAGACTTATAGA+TGG + chr7_2:12475589-12475608 Msa1049300:intron 45.0%
TGATGACATGTTGCAACCTG+TGG - chr7_2:12475764-12475783 None:intergenic 45.0%
CATGTCATCATCATCACCGT+CGG + chr7_2:12475774-12475793 Msa1049300:CDS 45.0%
!! GTTGGTTTGTCATCATCCGA+CGG - chr7_2:12475793-12475812 None:intergenic 45.0%
AACCAACCCTTAACACCGAT+TGG + chr7_2:12475806-12475825 Msa1049300:CDS 45.0%
!! AGATCGCCAATCGGTGTTAA+GGG - chr7_2:12475815-12475834 None:intergenic 45.0%
!! AAGATCGCCAATCGGTGTTA+AGG - chr7_2:12475816-12475835 None:intergenic 45.0%
ATCTTTCCGTGCAAAACTGG+TGG + chr7_2:12475831-12475850 Msa1049300:CDS 45.0%
GTCGCTGAAGAAAGGAATTC+GGG - chr7_2:12475877-12475896 None:intergenic 45.0%
!! CTGGATTAGTCGCTGAAGAA+AGG - chr7_2:12475885-12475904 None:intergenic 45.0%
TTCAGCGACTAATCCAGACA+CGG + chr7_2:12475888-12475907 Msa1049300:CDS 45.0%
GTAATCCATGAGCCTGAAAG+AGG + chr7_2:12475958-12475977 Msa1049300:CDS 45.0%
AACAACCTCTTTCAGGCTCA+TGG - chr7_2:12475966-12475985 None:intergenic 45.0%
! TTTGGGGGACCTTTAGAAGA+AGG + chr7_2:12476171-12476190 Msa1049300:CDS 45.0%
! TTGGGGGACCTTTAGAAGAA+GGG + chr7_2:12476172-12476191 Msa1049300:CDS 45.0%
GGTGAGTCCAAAAGATGATG+TGG + chr7_2:12476203-12476222 Msa1049300:CDS 45.0%
GAGTCCAAAAGATGATGTGG+TGG + chr7_2:12476206-12476225 Msa1049300:CDS 45.0%
! GATGATGTGGTGGGAAAAAG+TGG + chr7_2:12476216-12476235 Msa1049300:CDS 45.0%
! TGATGTGGTGGGAAAAAGTG+GGG + chr7_2:12476218-12476237 Msa1049300:CDS 45.0%
AAGAGGAATGTGGTTGAGGT+TGG + chr7_2:12476312-12476331 Msa1049300:CDS 45.0%
! TCTTTGATGGGTATTGTGGG+TGG + chr7_2:12476346-12476365 Msa1049300:CDS 45.0%
! CTTTGATGGGTATTGTGGGT+GGG + chr7_2:12476347-12476366 Msa1049300:CDS 45.0%
ATGTTGGAATTGTTGGGCTC+TGG + chr7_2:12476451-12476470 Msa1049300:CDS 45.0%
TGTTGGAATTGTTGGGCTCT+GGG + chr7_2:12476452-12476471 Msa1049300:CDS 45.0%
GGCAAAAGGAAGGTCAAGTA+AGG + chr7_2:12476495-12476514 Msa1049300:CDS 45.0%
ACATGAGGATGGGTAAAACC+GGG - chr7_2:12476536-12476555 None:intergenic 45.0%
TCCCATCCACACAAACACTT+TGG - chr7_2:12476657-12476676 None:intergenic 45.0%
GTGTAGTAGCAAGACCCTAA+GGG + chr7_2:12476834-12476853 Msa1049300:three_prime_UTR 45.0%
GGCACTAGTATCAACCCTTA+GGG - chr7_2:12476851-12476870 None:intergenic 45.0%
AAGCTTCTCAATTGGCAAGC+AGG + chr7_2:12476907-12476926 Msa1049300:three_prime_UTR 45.0%
TCTTTCACCAAGATCAGAGG+TGG + chr7_2:12474892-12474911 Msa1049300:CDS 45.0%
TAGAGATCCACCTCTGATCT+TGG - chr7_2:12474902-12474921 None:intergenic 45.0%
TCAACGCCGAGACTTATAGA+TGG + chr7_2:12475589-12475608 Msa1049300:intron 45.0%
TGATGACATGTTGCAACCTG+TGG - chr7_2:12475764-12475783 None:intergenic 45.0%
CATGTCATCATCATCACCGT+CGG + chr7_2:12475774-12475793 Msa1049300:CDS 45.0%
!! GTTGGTTTGTCATCATCCGA+CGG - chr7_2:12475793-12475812 None:intergenic 45.0%
AACCAACCCTTAACACCGAT+TGG + chr7_2:12475806-12475825 Msa1049300:CDS 45.0%
!! AGATCGCCAATCGGTGTTAA+GGG - chr7_2:12475815-12475834 None:intergenic 45.0%
!! AAGATCGCCAATCGGTGTTA+AGG - chr7_2:12475816-12475835 None:intergenic 45.0%
ATCTTTCCGTGCAAAACTGG+TGG + chr7_2:12475831-12475850 Msa1049300:CDS 45.0%
GTCGCTGAAGAAAGGAATTC+GGG - chr7_2:12475877-12475896 None:intergenic 45.0%
!! CTGGATTAGTCGCTGAAGAA+AGG - chr7_2:12475885-12475904 None:intergenic 45.0%
TTCAGCGACTAATCCAGACA+CGG + chr7_2:12475888-12475907 Msa1049300:CDS 45.0%
GTAATCCATGAGCCTGAAAG+AGG + chr7_2:12475958-12475977 Msa1049300:CDS 45.0%
AACAACCTCTTTCAGGCTCA+TGG - chr7_2:12475966-12475985 None:intergenic 45.0%
! TTTGGGGGACCTTTAGAAGA+AGG + chr7_2:12476171-12476190 Msa1049300:CDS 45.0%
! TTGGGGGACCTTTAGAAGAA+GGG + chr7_2:12476172-12476191 Msa1049300:CDS 45.0%
GGTGAGTCCAAAAGATGATG+TGG + chr7_2:12476203-12476222 Msa1049300:CDS 45.0%
GAGTCCAAAAGATGATGTGG+TGG + chr7_2:12476206-12476225 Msa1049300:CDS 45.0%
! GATGATGTGGTGGGAAAAAG+TGG + chr7_2:12476216-12476235 Msa1049300:CDS 45.0%
! TGATGTGGTGGGAAAAAGTG+GGG + chr7_2:12476218-12476237 Msa1049300:CDS 45.0%
AAGAGGAATGTGGTTGAGGT+TGG + chr7_2:12476312-12476331 Msa1049300:CDS 45.0%
! TCTTTGATGGGTATTGTGGG+TGG + chr7_2:12476346-12476365 Msa1049300:CDS 45.0%
! CTTTGATGGGTATTGTGGGT+GGG + chr7_2:12476347-12476366 Msa1049300:CDS 45.0%
ATGTTGGAATTGTTGGGCTC+TGG + chr7_2:12476451-12476470 Msa1049300:CDS 45.0%
TGTTGGAATTGTTGGGCTCT+GGG + chr7_2:12476452-12476471 Msa1049300:CDS 45.0%
GGCAAAAGGAAGGTCAAGTA+AGG + chr7_2:12476495-12476514 Msa1049300:CDS 45.0%
ACATGAGGATGGGTAAAACC+GGG - chr7_2:12476536-12476555 None:intergenic 45.0%
TCCCATCCACACAAACACTT+TGG - chr7_2:12476657-12476676 None:intergenic 45.0%
GTGTAGTAGCAAGACCCTAA+GGG + chr7_2:12476834-12476853 Msa1049300:three_prime_UTR 45.0%
GGCACTAGTATCAACCCTTA+GGG - chr7_2:12476851-12476870 None:intergenic 45.0%
TGCACGGAAAGATCGCCAAT+CGG - chr7_2:12475824-12475843 None:intergenic 50.0%
GCGATCTTTCCGTGCAAAAC+TGG + chr7_2:12475828-12475847 Msa1049300:CDS 50.0%
GACTAATCCAGACACGGTTG+TGG + chr7_2:12475894-12475913 Msa1049300:CDS 50.0%
! TGATCCCTGATGGGCCTATT+GGG - chr7_2:12476062-12476081 None:intergenic 50.0%
! ATGATCCCTGATGGGCCTAT+TGG - chr7_2:12476063-12476082 None:intergenic 50.0%
TGGCTGCTGAAATGGTGAAG+AGG + chr7_2:12476295-12476314 Msa1049300:CDS 50.0%
GGTGAAGAGGAATGTGGTTG+AGG + chr7_2:12476308-12476327 Msa1049300:CDS 50.0%
GACGAAGTTCTCGGGCTTAT+GGG + chr7_2:12476474-12476493 Msa1049300:CDS 50.0%
TTCTCGGGCTTATGGGCAAA+AGG + chr7_2:12476481-12476500 Msa1049300:CDS 50.0%
!!! AGGAGCTGTATTTTAGGGCC+CGG + chr7_2:12476515-12476534 Msa1049300:exon 50.0%
GGTGTAGTAGCAAGACCCTA+AGG + chr7_2:12476833-12476852 Msa1049300:three_prime_UTR 50.0%
GGGCACTAGTATCAACCCTT+AGG - chr7_2:12476852-12476871 None:intergenic 50.0%
TGCACGGAAAGATCGCCAAT+CGG - chr7_2:12475824-12475843 None:intergenic 50.0%
GCGATCTTTCCGTGCAAAAC+TGG + chr7_2:12475828-12475847 Msa1049300:CDS 50.0%
GACTAATCCAGACACGGTTG+TGG + chr7_2:12475894-12475913 Msa1049300:CDS 50.0%
! TGATCCCTGATGGGCCTATT+GGG - chr7_2:12476062-12476081 None:intergenic 50.0%
! ATGATCCCTGATGGGCCTAT+TGG - chr7_2:12476063-12476082 None:intergenic 50.0%
TGGCTGCTGAAATGGTGAAG+AGG + chr7_2:12476295-12476314 Msa1049300:CDS 50.0%
GGTGAAGAGGAATGTGGTTG+AGG + chr7_2:12476308-12476327 Msa1049300:CDS 50.0%
GACGAAGTTCTCGGGCTTAT+GGG + chr7_2:12476474-12476493 Msa1049300:CDS 50.0%
TTCTCGGGCTTATGGGCAAA+AGG + chr7_2:12476481-12476500 Msa1049300:CDS 50.0%
!!! AGGAGCTGTATTTTAGGGCC+CGG + chr7_2:12476515-12476534 Msa1049300:exon 50.0%
GGTGTAGTAGCAAGACCCTA+AGG + chr7_2:12476833-12476852 Msa1049300:three_prime_UTR 50.0%
GGGCACTAGTATCAACCCTT+AGG - chr7_2:12476852-12476871 None:intergenic 50.0%
!! CGCCAATCGGTGTTAAGGGT+TGG - chr7_2:12475811-12475830 None:intergenic 55.0%
TTCCGTGCAAAACTGGTGGC+CGG + chr7_2:12475835-12475854 Msa1049300:CDS 55.0%
GGATGATCCACAACCGTGTC+TGG - chr7_2:12475904-12475923 None:intergenic 55.0%
TGTGGGTCTGGCTGCTGAAA+TGG + chr7_2:12476287-12476306 Msa1049300:CDS 55.0%
GGACGAAGTTCTCGGGCTTA+TGG + chr7_2:12476473-12476492 Msa1049300:CDS 55.0%
CGGGCTTATGGGCAAAAGGA+AGG + chr7_2:12476485-12476504 Msa1049300:CDS 55.0%
! TGGGCTCTAATCATGGGTGC+TGG + chr7_2:12476682-12476701 Msa1049300:three_prime_UTR 55.0%
!! CGCCAATCGGTGTTAAGGGT+TGG - chr7_2:12475811-12475830 None:intergenic 55.0%
TTCCGTGCAAAACTGGTGGC+CGG + chr7_2:12475835-12475854 Msa1049300:CDS 55.0%
GGATGATCCACAACCGTGTC+TGG - chr7_2:12475904-12475923 None:intergenic 55.0%
TGTGGGTCTGGCTGCTGAAA+TGG + chr7_2:12476287-12476306 Msa1049300:CDS 55.0%
GGACGAAGTTCTCGGGCTTA+TGG + chr7_2:12476473-12476492 Msa1049300:CDS 55.0%
CGGGCTTATGGGCAAAAGGA+AGG + chr7_2:12476485-12476504 Msa1049300:CDS 55.0%
! TGGGCTCTAATCATGGGTGC+TGG + chr7_2:12476682-12476701 Msa1049300:three_prime_UTR 55.0%
! CTCCGGCCACCAGTTTTGCA+CGG - chr7_2:12475840-12475859 None:intergenic 60.0%
AACGGCCCAATAGGCCCATC+AGG + chr7_2:12476054-12476073 Msa1049300:CDS 60.0%
ACGGCCCAATAGGCCCATCA+GGG + chr7_2:12476055-12476074 Msa1049300:CDS 60.0%
!! GGGCTCTGGGACGAAGTTCT+CGG + chr7_2:12476465-12476484 Msa1049300:CDS 60.0%
!! GGCTCTGGGACGAAGTTCTC+GGG + chr7_2:12476466-12476485 Msa1049300:CDS 60.0%
! CTCCGGCCACCAGTTTTGCA+CGG - chr7_2:12475840-12475859 None:intergenic 60.0%
AACGGCCCAATAGGCCCATC+AGG + chr7_2:12476054-12476073 Msa1049300:CDS 60.0%
ACGGCCCAATAGGCCCATCA+GGG + chr7_2:12476055-12476074 Msa1049300:CDS 60.0%
!! GGGCTCTGGGACGAAGTTCT+CGG + chr7_2:12476465-12476484 Msa1049300:CDS 60.0%
!! GGCTCTGGGACGAAGTTCTC+GGG + chr7_2:12476466-12476485 Msa1049300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 12474642 12476929 12474642 ID=Msa1049300;Name=Msa1049300
chr7_2 mRNA 12474642 12476929 12474642 ID=Msa1049300-mRNA-1;Parent=Msa1049300;Name=Msa1049300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=223|1|1|1|0|0|2|414|291
chr7_2 exon 12474642 12474991 12474642 ID=Msa1049300-mRNA-1:exon:3140;Parent=Msa1049300-mRNA-1
chr7_2 exon 12475767 12476929 12475767 ID=Msa1049300-mRNA-1:exon:3141;Parent=Msa1049300-mRNA-1
chr7_2 five_prime_UTR 12474642 12474864 12474642 ID=Msa1049300-mRNA-1:five_prime_utr;Parent=Msa1049300-mRNA-1
chr7_2 CDS 12474865 12474991 12474865 ID=Msa1049300-mRNA-1:cds;Parent=Msa1049300-mRNA-1
chr7_2 CDS 12475767 12476515 12475767 ID=Msa1049300-mRNA-1:cds;Parent=Msa1049300-mRNA-1
chr7_2 three_prime_UTR 12476516 12476929 12476516 ID=Msa1049300-mRNA-1:three_prime_utr;Parent=Msa1049300-mRNA-1
Gene Sequence

>Msa1049300

ATGGATGCTTGTTTTCTCTCCCATAGTTCTTTCACCAAGATCAGAGGTGGATCTCTAGCTTACTCCAAAAAAATTTCTCATCAACAATTCAATTCAAGAAAAGTTGGAATTCCGTTTCATGTATCATGTTGCAACATGTCATCATCATCACCGTCGGATGATGACAAACCAACCCTTAACACCGATTGGCGATCTTTCCGTGCAAAACTGGTGGCCGGAGAACAATTACTTAAACCCGAATTCCTTTCTTCAGCGACTAATCCAGACACGGTTGTGGATCATCCACCACTAATCACAATTGGTGACAAATGGGCTCACGTAATCCATGAGCCTGAAAGAGGTTGTTTATTAATAGCAACAGAAAAGCTTGATGGGGTTCACATTTTCGAACGAACGGTGATCCTTCTTTTATCAAACGGCCCAATAGGCCCATCAGGGATCATACTCAATAGACCATCTTTGATGTCTATCAAAGAAACAAGATCAACTGCATTTGATGTAATGGGTACTTTTTCTAATAGTCCTTTGTATTTTGGGGGACCTTTAGAAGAAGGGTTGTTTTTGGTGAGTCCAAAAGATGATGTGGTGGGAAAAAGTGGGGTTTTTGATGAAGTGATGAAGGGTTTGTATTATGGTACTAAAGAAAGTGTGGGTCTGGCTGCTGAAATGGTGAAGAGGAATGTGGTTGAGGTTGGTGATTTTAGATTCTTTGATGGGTATTGTGGGTGGGAGAAAGAACAATTGAGAGATGAAATTAGGGATGGTTATTGGACTGTTGCTGCTTGTAGTCCAAGTGTTGTTGATTTGGGGAATGTTGGAATTGTTGGGCTCTGGGACGAAGTTCTCGGGCTTATGGGCAAAAGGAAGGTCAAGTAA
Protein sequence

>Msa1049300

MDACFLSHSSFTKIRGGSLAYSKKISHQQFNSRKVGIPFHVSCCNMSSSSPSDDDKPTLNTDWRSFRAKLVAGEQLLKPEFLSSATNPDTVVDHPPLITIGDKWAHVIHEPERGCLLIATEKLDGVHIFERTVILLLSNGPIGPSGIILNRPSLMSIKETRSTAFDVMGTFSNSPLYFGGPLEEGLFLVSPKDDVVGKSGVFDEVMKGLYYGTKESVGLAAEMVKRNVVEVGDFRFFDGYCGWEKEQLRDEIRDGYWTVAACSPSVVDLGNVGIVGLWDEVLGLMGKRKVK*