AlfalfaGEDB | Msa1437320

M. sativa cultivar zhongmu-4 / Msa1437320

KEGG: K02945
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363
PFAM: PF00575.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437320	XP_003594656.2	95.823	407	15	2	1	406	1	406	0.0	790

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437320	sp\|P29344\|RR1_SPIOL	75.245	408	96	2	3	405	1	408	0.0	632

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437320	G7IL22	95.823	407	15	2	1	406	1	406	0.0	790

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1437320	0.843235	1.587237e-58	-8.615850e-47
Msa0000780	Msa1437320	0.842810	2.060191e-58	-8.615850e-47
Msa0001420	Msa1437320	0.903120	4.815200e-79	-8.615850e-47
Msa0001460	Msa1437320	0.835724	1.420464e-56	-8.615850e-47
Msa0001510	Msa1437320	0.857822	1.255714e-62	-8.615850e-47
Msa0001540	Msa1437320	0.940385	2.555073e-100	-8.615850e-47
Msa0002060	Msa1437320	0.884394	1.991463e-71	-8.615850e-47
Msa0002690	Msa1437320	0.803749	3.004944e-49	-8.615850e-47
Msa0003470	Msa1437320	0.822790	1.961706e-53	-8.615850e-47
Msa0005160	Msa1437320	0.814175	1.761241e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437320	MtrunA17_Chr2g0293821	95.823	407	15	2	1	406	1	406	0.0	790
Msa1437320	MtrunA17_Chr1g0201261	30.244	205	134	4	159	357	275	476	1.81e-23	102
Msa1437320	MtrunA17_Chr3g0122171	27.368	190	120	3	161	332	94	283	1.64e-17	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437320	AT5G30510.1	70.218	413	113	2	3	405	1	413	0.0	598
Msa1437320	AT1G71720.1	33.171	205	128	4	159	357	261	462	1.91e-24	105
Msa1437320	AT3G23700.1	31.667	180	105	4	171	332	97	276	4.81e-22	97.4
Msa1437320	AT1G71720.2	32.500	160	100	3	159	312	261	418	2.98e-17	83.6
Msa1437320	AT5G14580.1	39.806	103	51	3	231	332	660	752	1.31e-11	67.0
Msa1437320	AT3G11964.1	28.758	153	100	4	254	402	1431	1578	5.25e-11	65.5
Msa1437320	AT3G11964.2	28.758	153	100	4	254	402	1455	1602	5.90e-11	65.1

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Find 133 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAATTTGTAATTGT+TGG	0.366149	tig0028267:+35738	Msa1437320:CDS
AAAGCCGTAGCCGGCATCCA+AGG	0.543780	tig0028267:+36635	Msa1437320:CDS
AAAGTTTGTGGAGGTGGACC+AGG	0.506690	tig0028267:+36583	Msa1437320:CDS
AACAAAAGCTCCACTAGTAT+CGG	0.548885	tig0028267:-35619	None:intergenic
AACAACTGACAAGCACAAAA+TGG	0.319912	tig0028267:+34100	Msa1437320:CDS
AACAAGCAAATACCTCTGGC+TGG	0.506114	tig0028267:-37371	None:intergenic
AACAAGTTCCTCAAATATAC+AGG	0.341352	tig0028267:-37862	None:intergenic
AACTCAATAATCTCTTCTCC+CGG	0.548474	tig0028267:-36548	None:intergenic
AAGAAGTTGGAACCTACACC+TGG	0.576278	tig0028267:+36959	Msa1437320:CDS
AAGCATATCAGCACGAGCCA+TGG	0.569475	tig0028267:-37343	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGATAGAAGAAGATAGATA+AGG	-	tig0028267:33994-34013	None:intergenic	30.0%
CAACAAAAAAAAACTTGCCT+TGG	-	tig0028267:34361-34380	None:intergenic	30.0%
TTACTTACAAAAGAGACACT+TGG	+	tig0028267:35076-35095	Msa1437320:intron	30.0%
TACTCTTAATATCTGACCAA+CGG	+	tig0028267:35174-35193	Msa1437320:intron	30.0%
CTAAAAATAATTTCCACCGT+TGG	-	tig0028267:35193-35212	None:intergenic	30.0%
CACACATTTAGAGAACAAAA+TGG	-	tig0028267:35250-35269	None:intergenic	30.0%
ACTAGCCAAAAAGATATTTC+GGG	-	tig0028267:35319-35338	None:intergenic	30.0%
ATTATAATGACAACGTCTAG+AGG	+	tig0028267:35457-35476	Msa1437320:intron	30.0%
TTATAATGACAACGTCTAGA+GGG	+	tig0028267:35458-35477	Msa1437320:intron	30.0%
GGTCAAAATGAAATTGATGA+TGG	+	tig0028267:35759-35778	Msa1437320:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0028267	gene	33964	38021	33964	ID=Msa1437320;Name=Msa1437320
tig0028267	mRNA	33964	38021	33964	ID=Msa1437320-mRNA-1;Parent=Msa1437320;Name=Msa1437320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=114\|1\|1\|1\|1\|1\|7\|319\|407
tig0028267	exon	33964	34362	33964	ID=Msa1437320-mRNA-1:exon:10608;Parent=Msa1437320-mRNA-1
tig0028267	exon	35597	35872	35597	ID=Msa1437320-mRNA-1:exon:10609;Parent=Msa1437320-mRNA-1
tig0028267	exon	36086	36166	36086	ID=Msa1437320-mRNA-1:exon:10610;Parent=Msa1437320-mRNA-1
tig0028267	exon	36542	36823	36542	ID=Msa1437320-mRNA-1:exon:10611;Parent=Msa1437320-mRNA-1
tig0028267	exon	36908	37018	36908	ID=Msa1437320-mRNA-1:exon:10612;Parent=Msa1437320-mRNA-1
tig0028267	exon	37294	37380	37294	ID=Msa1437320-mRNA-1:exon:10613;Parent=Msa1437320-mRNA-1
tig0028267	exon	37601	38021	37601	ID=Msa1437320-mRNA-1:exon:10614;Parent=Msa1437320-mRNA-1
tig0028267	five_prime_UTR	33964	34077	33964	ID=Msa1437320-mRNA-1:five_prime_utr;Parent=Msa1437320-mRNA-1
tig0028267	CDS	34078	34362	34078	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	35597	35872	35597	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	36086	36166	36086	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	36542	36823	36542	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	36908	37018	36908	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	37294	37380	37294	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	CDS	37601	37702	37601	ID=Msa1437320-mRNA-1:cds;Parent=Msa1437320-mRNA-1
tig0028267	three_prime_UTR	37703	38021	37703	ID=Msa1437320-mRNA-1:three_prime_utr;Parent=Msa1437320-mRNA-1

Gene Sequence

>Msa1437320

ATGGCCATGGCGTCTGTGGCTCAACAACTGACAAGCACAAAATGGACTCCCCTCCTATGGAAACCAACAACAACACAAACCCATAAACAACAAAGACGCCCTGGTATTGTATGTTCCATTGCAATTACAAGCGCCAATAACAAAGAAAGAGCAAAGCTTAAAGAGCTTTTCGATAATGCTTATGAACGTTGTCGTACTGCTCCAATGGAAGGTGTTTCGTTTACTCTTGACCAGTTTACAGAAGCTCTTGAAAAATATGATTTTGAGTCTGAAATTGGAACCAAGGTTAAGGGCACTGTGTTTGGCACCGATACTAGTGGAGCTTTTGTTGACATTACTTCAAAGTCCACGGCTTACTTGCCGCTACGAGAGGCGAGCCTCTACAAACTTAGGCATGTAGAAGAAGCAGGCATAGTTCCTGGCGTGAAAGAGGAATTTGTAATTGTTGGTCAAAATGAAATTGATGATGGTATGATCTTGAGTTTAAGAGATATTCAGGCTGAGCTTGCATGGGAAAGGTGTAGACAACTTCAAGCAGAAGATGCTGTTGTCAAGGGTAAGATTATTGATGCAAATAAAGGTGGTGTGGTGGCTGAAGTTGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATGTCAACGAAAACACCGGGAGAAGAGATTATTGAGTTTGAGGTTCCTCTAAAGTTTGTGGAGGTGGACCAGGAACAAGCCAGACTTATCCTTAGCCACCGCAAAGCCGTAGCCGGCATCCAAGGACAACTAGGAATTGGATCAGTTGTCACCGGCACTGTGCAAAGCCTAAAGCCATATGGCGCCTTTGTCGACATTGGTGGAATTAGTGGCCTTCTTCATGTCAGTCAAATTAGTCACGATCGTATATCAGATATTGCAACTGTTCTTCAACCTGGTGATACTCTGAAGGTGATGATCTTAAGTCATGACCGCGAGAGAGGTCGTGTAAGTCTTTCCACAAAGAAGTTGGAACCTACACCTGGAGATATGATCCGTAATCCAACGCTTGTATTCGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGACGGGATCTTAGGACCACTTGGTTCAGACTTGCCGCCAGAGGGACTGGATCTGAGTGAGATACCCCCAGCTGAAGGATAA

Protein sequence

>Msa1437320

MAMASVAQQLTSTKWTPLLWKPTTTQTHKQQRRPGIVCSIAITSANNKERAKLKELFDNAYERCRTAPMEGVSFTLDQFTEALEKYDFESEIGTKVKGTVFGTDTSGAFVDITSKSTAYLPLREASLYKLRHVEEAGIVPGVKEEFVIVGQNEIDDGMILSLRDIQAELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKTPGEEIIEFEVPLKFVEVDQEQARLILSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPPEGLDLSEIPPAEG*