AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144950 MtrunA17_Chr8g0392891 98.438 256 4 0 1 256 1 256 0.0 511
Msa1144950 MtrunA17_Chr1g0179231 36.000 100 52 4 134 225 74 169 5.34e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144950 AT1G18170.1 70.430 186 51 2 75 256 62 247 1.08e-95 281
Msa1144950 AT1G73655.1 50.397 252 99 4 1 251 1 227 1.64e-80 242
Msa1144950 AT3G10060.1 29.379 177 101 5 87 255 60 220 7.21e-13 66.6

Find 87 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAATGGTGCTGATTT+AGG 0.153499 7_4:+21438416 Msa1144950:CDS
GATGAAACAACTGGTTTAAT+AGG 0.212922 7_4:-21437760 None:intergenic
CTAAACATGGCCACTATCTT+TGG 0.258527 7_4:+21437562 Msa1144950:exon
TAATGATAATAAGTTTGATT+TGG 0.285903 7_4:-21437534 None:intergenic
GAGAGAATGGTGCTGATTTA+GGG 0.288158 7_4:+21438417 Msa1144950:CDS
AGTTATTGTGCCTCCTGAAT+TGG 0.295641 7_4:+21438388 Msa1144950:CDS
TTTGGTTGTGATTGATATAA+TGG 0.298752 7_4:+21438211 Msa1144950:CDS
ATACATGTCAGTGTAAAATA+TGG 0.344077 7_4:+21438640 Msa1144950:three_prime_UTR
TTGACCAGACGGTTTGGCCT+TGG 0.354356 7_4:+21437820 Msa1144950:CDS
TTCTCTCTAAATCCCAATTC+AGG 0.369157 7_4:-21438401 None:intergenic
CAAAGATAGTGGCCATGTTT+AGG 0.369174 7_4:-21437561 None:intergenic
GAAACCATTGGCTCTAGTTA+TGG 0.370613 7_4:+21438286 Msa1144950:CDS
AAACCATTGGCTCTAGTTAT+GGG 0.372920 7_4:+21438287 Msa1144950:CDS
ATAATTAACCTTATGCCATT+AGG 0.374600 7_4:-21438070 None:intergenic
TCACACACACCCTTACTATA+TGG 0.378280 7_4:-21438317 None:intergenic
TGTGATGACTGGTTCTTGTA+TGG 0.395972 7_4:-21437609 None:intergenic
GCCTTGGAGCTGGTCTTGCA+TGG 0.396282 7_4:+21437836 Msa1144950:CDS
ACCAGTTGTTTCATCAACTA+AGG 0.400326 7_4:+21437768 Msa1144950:CDS
GTTATTGTGCCTCCTGAATT+GGG 0.401025 7_4:+21438389 Msa1144950:CDS
AGTAGTGTGACATGAAAATA+TGG 0.403476 7_4:+21438726 Msa1144950:three_prime_UTR
TATGCCAAGGCGAGGTGATT+TGG 0.421986 7_4:+21438193 Msa1144950:CDS
CCTTGGAGCTGGTCTTGCAT+GGG 0.424931 7_4:+21437837 Msa1144950:CDS
TTGGTTGTGATTGATATAAT+GGG 0.427668 7_4:+21438212 Msa1144950:CDS
GAATGTTGAGGAGGAGAAAG+AGG 0.427854 7_4:+21438039 Msa1144950:CDS
ACTTCCTTGACCAGACGGTT+TGG 0.433297 7_4:+21437814 Msa1144950:CDS
AGACGGTTTGGCCTTGGAGC+TGG 0.438403 7_4:+21437826 Msa1144950:CDS
GCATGTACACTAGAGTGCTT+TGG 0.438433 7_4:+21438537 Msa1144950:three_prime_UTR
AGGAATCTGTTGCTGTGCTT+TGG 0.442859 7_4:-21437740 None:intergenic
ACCTTAGTTGATGAAACAAC+TGG 0.450082 7_4:-21437769 None:intergenic
GGGGTCAAGGCCATATAGTA+AGG 0.452971 7_4:+21438307 Msa1144950:CDS
AGCTCCAAGGCCAAACCGTC+TGG 0.454662 7_4:-21437824 None:intergenic
GGAGCTGGTCTTGCATGGGT+TGG 0.455263 7_4:+21437841 Msa1144950:CDS
AGGTACTATGAATTGAAAAT+CGG 0.465928 7_4:+21438161 Msa1144950:intron
AAAGAGGTGATTCTGCCTAA+TGG 0.469758 7_4:+21438055 Msa1144950:CDS
GTTGTTGACTGTGGAGATGA+TGG 0.481395 7_4:-21437682 None:intergenic
GTGTTTGTGAACACATTTGA+AGG 0.494203 7_4:+21438257 Msa1144950:CDS
GTGATGACTGGTTCTTGTAT+GGG 0.494469 7_4:-21437608 None:intergenic
GGTTGCGGTTGTTGTGGTGG+AGG 0.494679 7_4:-21437652 None:intergenic
GAATTGGGATTTAGAGAGAA+TGG 0.496442 7_4:+21438404 Msa1144950:CDS
AACACTTGAATACGTTGTAC+AGG 0.502708 7_4:+21438466 Msa1144950:CDS
GAGGGTTGCGGTTGTTGTGG+TGG 0.510547 7_4:-21437655 None:intergenic
AAACCGTCTGGTCAAGGAAG+TGG 0.514843 7_4:-21437812 None:intergenic
CCTGAGGGTTGCGGTTGTTG+TGG 0.518773 7_4:-21437658 None:intergenic
TGATTCTGCCTAATGGCATA+AGG 0.521446 7_4:+21438062 Msa1144950:CDS
TTCAAATTTGTTGTTGACTG+TGG 0.526248 7_4:-21437691 None:intergenic
TGATGACTGGTTCTTGTATG+GGG 0.527054 7_4:-21437607 None:intergenic
AATGGTGCTGATTTAGGGTC+TGG 0.527304 7_4:+21438422 Msa1144950:CDS
ATGGGAAAGGTTGAAAGCAC+AGG 0.529021 7_4:+21438230 Msa1144950:CDS
TGATGAGGAACCAAAGATAG+TGG 0.529530 7_4:-21437572 None:intergenic
CACAACAAGAGTCTAATACA+AGG 0.533136 7_4:+21437917 Msa1144950:CDS
CCACAACAACCGCAACCCTC+AGG 0.533605 7_4:+21437658 Msa1144950:CDS
CTATGAAGGCAGGAGGGAAG+AGG 0.543711 7_4:+21438363 Msa1144950:CDS
TATAGTAAGGGTGTGTGTGA+AGG 0.554244 7_4:+21438320 Msa1144950:CDS
ATAGTAAGGGTGTGTGTGAA+GGG 0.556262 7_4:+21438321 Msa1144950:CDS
GAATCATCAAGCAGGTGCAA+TGG 0.557467 7_4:-21438501 None:intergenic
TTGCCACTTCCTTGACCAGA+CGG 0.563085 7_4:+21437809 Msa1144950:CDS
GATGATGGACCTGAGGGTTG+CGG 0.566646 7_4:-21437667 None:intergenic
TGGCTCTAGTTATGGGGTCA+AGG 0.567583 7_4:+21438294 Msa1144950:CDS
TGAAGGAGACAAGAAACCAT+TGG 0.568456 7_4:+21438274 Msa1144950:CDS
CTAAGGTTGATTCCACAGAC+TGG 0.569193 7_4:+21437785 Msa1144950:CDS
TTTAATCAGAATCATCAAGC+AGG 0.570592 7_4:-21438509 None:intergenic
AAGGCCAAACCGTCTGGTCA+AGG 0.575540 7_4:-21437818 None:intergenic
TTGTATTTATAGGAATGTTG+AGG 0.575987 7_4:+21438027 Msa1144950:intron
TACTATGAATTGAAAATCGG+TGG 0.577492 7_4:+21438164 Msa1144950:CDS
GACCCCATAACTAGAGCCAA+TGG 0.581524 7_4:-21438290 None:intergenic
ACTCTTGTTGTGAAACCTCA+AGG 0.583436 7_4:-21437906 None:intergenic
TATTTATAGGAATGTTGAGG+AGG 0.585244 7_4:+21438030 Msa1144950:intron
TATCATTATTATCCTAAACA+TGG 0.586973 7_4:+21437549 Msa1144950:exon
TGTGATTGATATAATGGGAA+AGG 0.597131 7_4:+21438217 Msa1144950:CDS
ACAACCAAATCACCTCGCCT+TGG 0.600709 7_4:-21438197 None:intergenic
TATTCAAGTGTTGCAAGTGG+AGG 0.610335 7_4:-21438455 None:intergenic
CCCATGCAAGACCAGCTCCA+AGG 0.610919 7_4:-21437837 None:intergenic
GGAAGTGGCAATCCAGTCTG+TGG 0.620097 7_4:-21437797 None:intergenic
GGGTCAAGGCCATATAGTAA+GGG 0.620171 7_4:+21438308 Msa1144950:CDS
TCGGTGGTGGTGATATGCCA+AGG 0.624769 7_4:+21438180 Msa1144950:CDS
TGAAGAAGTGATGTGATGAC+TGG 0.628381 7_4:-21437620 None:intergenic
AACCATTGGCTCTAGTTATG+GGG 0.638329 7_4:+21438288 Msa1144950:CDS
CTGTGGAGATGATGGACCTG+AGG 0.638664 7_4:-21437674 None:intergenic
ACGTATTCAAGTGTTGCAAG+TGG 0.645589 7_4:-21438458 None:intergenic
TATGAATTGAAAATCGGTGG+TGG 0.648406 7_4:+21438167 Msa1144950:CDS
GGGGAGTAAGAAAATTGATG+AGG 0.664361 7_4:-21437587 None:intergenic
TCTCTAAATCCCAATTCAGG+AGG 0.664404 7_4:-21438398 None:intergenic
TGCTGATTTAGGGTCTGGTG+TGG 0.665665 7_4:+21438427 Msa1144950:CDS
TGTGGAGATGATGGACCTGA+GGG 0.675679 7_4:-21437673 None:intergenic
GATGACTGGTTCTTGTATGG+GGG 0.683084 7_4:-21437606 None:intergenic
AGTGTGACATGAAAATATGG+TGG 0.709386 7_4:+21438729 Msa1144950:three_prime_UTR
GGTGGTGATATGCCAAGGCG+AGG 0.718124 7_4:+21438185 Msa1144950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATATTTTTGTATTTAT+AGG + chr7_4:21438017-21438036 Msa1144950:intron 10.0%
!!! AATGATATTTTTGTATTTAT+AGG + chr7_4:21438017-21438036 Msa1144950:intron 10.0%
!! TAATGATAATAAGTTTGATT+TGG - chr7_4:21437537-21437556 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG + chr7_4:21437978-21437997 Msa1144950:intron 15.0%
!!! ATTTTGTATGGATTAAATAT+AGG + chr7_4:21438606-21438625 Msa1144950:three_prime_UTR 15.0%
!!! GCAAAATAGTTTATTTTAAT+TGG - chr7_4:21438670-21438689 None:intergenic 15.0%
!! TAATGATAATAAGTTTGATT+TGG - chr7_4:21437537-21437556 None:intergenic 15.0%
!! TTATCAAAATCATATATGAA+TGG + chr7_4:21437978-21437997 Msa1144950:intron 15.0%
!!! ATTTTGTATGGATTAAATAT+AGG + chr7_4:21438606-21438625 Msa1144950:three_prime_UTR 15.0%
!!! GCAAAATAGTTTATTTTAAT+TGG - chr7_4:21438670-21438689 None:intergenic 15.0%
!! TATCATTATTATCCTAAACA+TGG + chr7_4:21437549-21437568 Msa1144950:exon 20.0%
!! ATATGTACTAAAAACTATGA+AGG + chr7_4:21438349-21438368 Msa1144950:CDS 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG + chr7_4:21438594-21438613 Msa1144950:three_prime_UTR 20.0%
!! TATCATTATTATCCTAAACA+TGG + chr7_4:21437549-21437568 Msa1144950:exon 20.0%
!! ATATGTACTAAAAACTATGA+AGG + chr7_4:21438349-21438368 Msa1144950:CDS 20.0%
!!! ATTTCATTCATCATTTTGTA+TGG + chr7_4:21438594-21438613 Msa1144950:three_prime_UTR 20.0%
! TTGTATTTATAGGAATGTTG+AGG + chr7_4:21438027-21438046 Msa1144950:intron 25.0%
! ATAATTAACCTTATGCCATT+AGG - chr7_4:21438073-21438092 None:intergenic 25.0%
! AGGTACTATGAATTGAAAAT+CGG + chr7_4:21438161-21438180 Msa1144950:intron 25.0%
! TTTGGTTGTGATTGATATAA+TGG + chr7_4:21438211-21438230 Msa1144950:CDS 25.0%
! TTGGTTGTGATTGATATAAT+GGG + chr7_4:21438212-21438231 Msa1144950:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG + chr7_4:21438640-21438659 Msa1144950:three_prime_UTR 25.0%
! TTTACAAAAATGTAGTGATG+TGG - chr7_4:21438692-21438711 None:intergenic 25.0%
! TTGTATTTATAGGAATGTTG+AGG + chr7_4:21438027-21438046 Msa1144950:intron 25.0%
! ATAATTAACCTTATGCCATT+AGG - chr7_4:21438073-21438092 None:intergenic 25.0%
! AGGTACTATGAATTGAAAAT+CGG + chr7_4:21438161-21438180 Msa1144950:intron 25.0%
! TTTGGTTGTGATTGATATAA+TGG + chr7_4:21438211-21438230 Msa1144950:CDS 25.0%
! TTGGTTGTGATTGATATAAT+GGG + chr7_4:21438212-21438231 Msa1144950:CDS 25.0%
! ATACATGTCAGTGTAAAATA+TGG + chr7_4:21438640-21438659 Msa1144950:three_prime_UTR 25.0%
! TTTACAAAAATGTAGTGATG+TGG - chr7_4:21438692-21438711 None:intergenic 25.0%
!! TTCAAATTTGTTGTTGACTG+TGG - chr7_4:21437694-21437713 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG - chr7_4:21437763-21437782 None:intergenic 30.0%
TATTTATAGGAATGTTGAGG+AGG + chr7_4:21438030-21438049 Msa1144950:intron 30.0%
TACTATGAATTGAAAATCGG+TGG + chr7_4:21438164-21438183 Msa1144950:CDS 30.0%
! TGTGATTGATATAATGGGAA+AGG + chr7_4:21438217-21438236 Msa1144950:CDS 30.0%
TTTAATCAGAATCATCAAGC+AGG - chr7_4:21438512-21438531 None:intergenic 30.0%
AGTAGTGTGACATGAAAATA+TGG + chr7_4:21438726-21438745 Msa1144950:three_prime_UTR 30.0%
!! TTCAAATTTGTTGTTGACTG+TGG - chr7_4:21437694-21437713 None:intergenic 30.0%
! GATGAAACAACTGGTTTAAT+AGG - chr7_4:21437763-21437782 None:intergenic 30.0%
TATTTATAGGAATGTTGAGG+AGG + chr7_4:21438030-21438049 Msa1144950:intron 30.0%
TACTATGAATTGAAAATCGG+TGG + chr7_4:21438164-21438183 Msa1144950:CDS 30.0%
! TGTGATTGATATAATGGGAA+AGG + chr7_4:21438217-21438236 Msa1144950:CDS 30.0%
TTTAATCAGAATCATCAAGC+AGG - chr7_4:21438512-21438531 None:intergenic 30.0%
AGTAGTGTGACATGAAAATA+TGG + chr7_4:21438726-21438745 Msa1144950:three_prime_UTR 30.0%
! ACCAGTTGTTTCATCAACTA+AGG + chr7_4:21437768-21437787 Msa1144950:CDS 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG - chr7_4:21437772-21437791 None:intergenic 35.0%
ACAAATAAAAACTCGCCTTG+AGG + chr7_4:21437891-21437910 Msa1144950:CDS 35.0%
CACAACAAGAGTCTAATACA+AGG + chr7_4:21437917-21437936 Msa1144950:CDS 35.0%
TATGAATTGAAAATCGGTGG+TGG + chr7_4:21438167-21438186 Msa1144950:CDS 35.0%
GTGTTTGTGAACACATTTGA+AGG + chr7_4:21438257-21438276 Msa1144950:CDS 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG + chr7_4:21438287-21438306 Msa1144950:CDS 35.0%
GTACTAAAAACTATGAAGGC+AGG + chr7_4:21438353-21438372 Msa1144950:CDS 35.0%
TAAAAACTATGAAGGCAGGA+GGG + chr7_4:21438357-21438376 Msa1144950:CDS 35.0%
TTCTCTCTAAATCCCAATTC+AGG - chr7_4:21438404-21438423 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG + chr7_4:21438404-21438423 Msa1144950:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG + chr7_4:21438466-21438485 Msa1144950:CDS 35.0%
AGTGTGACATGAAAATATGG+TGG + chr7_4:21438729-21438748 Msa1144950:three_prime_UTR 35.0%
! ACCAGTTGTTTCATCAACTA+AGG + chr7_4:21437768-21437787 Msa1144950:CDS 35.0%
!! ACCTTAGTTGATGAAACAAC+TGG - chr7_4:21437772-21437791 None:intergenic 35.0%
ACAAATAAAAACTCGCCTTG+AGG + chr7_4:21437891-21437910 Msa1144950:CDS 35.0%
CACAACAAGAGTCTAATACA+AGG + chr7_4:21437917-21437936 Msa1144950:CDS 35.0%
TATGAATTGAAAATCGGTGG+TGG + chr7_4:21438167-21438186 Msa1144950:CDS 35.0%
GTGTTTGTGAACACATTTGA+AGG + chr7_4:21438257-21438276 Msa1144950:CDS 35.0%
!! AAACCATTGGCTCTAGTTAT+GGG + chr7_4:21438287-21438306 Msa1144950:CDS 35.0%
GTACTAAAAACTATGAAGGC+AGG + chr7_4:21438353-21438372 Msa1144950:CDS 35.0%
TAAAAACTATGAAGGCAGGA+GGG + chr7_4:21438357-21438376 Msa1144950:CDS 35.0%
TTCTCTCTAAATCCCAATTC+AGG - chr7_4:21438404-21438423 None:intergenic 35.0%
GAATTGGGATTTAGAGAGAA+TGG + chr7_4:21438404-21438423 Msa1144950:CDS 35.0%
AACACTTGAATACGTTGTAC+AGG + chr7_4:21438466-21438485 Msa1144950:CDS 35.0%
AGTGTGACATGAAAATATGG+TGG + chr7_4:21438729-21438748 Msa1144950:three_prime_UTR 35.0%
! CAAAGATAGTGGCCATGTTT+AGG - chr7_4:21437564-21437583 None:intergenic 40.0%
CTAAACATGGCCACTATCTT+TGG + chr7_4:21437562-21437581 Msa1144950:exon 40.0%
TGATGAGGAACCAAAGATAG+TGG - chr7_4:21437575-21437594 None:intergenic 40.0%
GGGGAGTAAGAAAATTGATG+AGG - chr7_4:21437590-21437609 None:intergenic 40.0%
! TGATGACTGGTTCTTGTATG+GGG - chr7_4:21437610-21437629 None:intergenic 40.0%
! GTGATGACTGGTTCTTGTAT+GGG - chr7_4:21437611-21437630 None:intergenic 40.0%
! TGTGATGACTGGTTCTTGTA+TGG - chr7_4:21437612-21437631 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG - chr7_4:21437623-21437642 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG + chr7_4:21437856-21437875 Msa1144950:CDS 40.0%
! ACTCTTGTTGTGAAACCTCA+AGG - chr7_4:21437909-21437928 None:intergenic 40.0%
AAAGAGGTGATTCTGCCTAA+TGG + chr7_4:21438055-21438074 Msa1144950:CDS 40.0%
TGATTCTGCCTAATGGCATA+AGG + chr7_4:21438062-21438081 Msa1144950:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG + chr7_4:21438141-21438160 Msa1144950:intron 40.0%
TGAAGGAGACAAGAAACCAT+TGG + chr7_4:21438274-21438293 Msa1144950:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG + chr7_4:21438286-21438305 Msa1144950:CDS 40.0%
!! AACCATTGGCTCTAGTTATG+GGG + chr7_4:21438288-21438307 Msa1144950:CDS 40.0%
TCACACACACCCTTACTATA+TGG - chr7_4:21438320-21438339 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG + chr7_4:21438320-21438339 Msa1144950:CDS 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG + chr7_4:21438321-21438340 Msa1144950:CDS 40.0%
CTAAAAACTATGAAGGCAGG+AGG + chr7_4:21438356-21438375 Msa1144950:CDS 40.0%
AGTTATTGTGCCTCCTGAAT+TGG + chr7_4:21438388-21438407 Msa1144950:CDS 40.0%
GTTATTGTGCCTCCTGAATT+GGG + chr7_4:21438389-21438408 Msa1144950:CDS 40.0%
TCTCTAAATCCCAATTCAGG+AGG - chr7_4:21438401-21438420 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG + chr7_4:21438416-21438435 Msa1144950:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG + chr7_4:21438417-21438436 Msa1144950:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG - chr7_4:21438458-21438477 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG - chr7_4:21438461-21438480 None:intergenic 40.0%
! CAAAGATAGTGGCCATGTTT+AGG - chr7_4:21437564-21437583 None:intergenic 40.0%
CTAAACATGGCCACTATCTT+TGG + chr7_4:21437562-21437581 Msa1144950:exon 40.0%
TGATGAGGAACCAAAGATAG+TGG - chr7_4:21437575-21437594 None:intergenic 40.0%
GGGGAGTAAGAAAATTGATG+AGG - chr7_4:21437590-21437609 None:intergenic 40.0%
! TGATGACTGGTTCTTGTATG+GGG - chr7_4:21437610-21437629 None:intergenic 40.0%
! GTGATGACTGGTTCTTGTAT+GGG - chr7_4:21437611-21437630 None:intergenic 40.0%
! TGTGATGACTGGTTCTTGTA+TGG - chr7_4:21437612-21437631 None:intergenic 40.0%
TGAAGAAGTGATGTGATGAC+TGG - chr7_4:21437623-21437642 None:intergenic 40.0%
!!! TGGGTTGGTTTTCTTGCATT+TGG + chr7_4:21437856-21437875 Msa1144950:CDS 40.0%
! ACTCTTGTTGTGAAACCTCA+AGG - chr7_4:21437909-21437928 None:intergenic 40.0%
AAAGAGGTGATTCTGCCTAA+TGG + chr7_4:21438055-21438074 Msa1144950:CDS 40.0%
TGATTCTGCCTAATGGCATA+AGG + chr7_4:21438062-21438081 Msa1144950:CDS 40.0%
!! CGACTCATTTTTGTCTCTAC+AGG + chr7_4:21438141-21438160 Msa1144950:intron 40.0%
TGAAGGAGACAAGAAACCAT+TGG + chr7_4:21438274-21438293 Msa1144950:CDS 40.0%
!! GAAACCATTGGCTCTAGTTA+TGG + chr7_4:21438286-21438305 Msa1144950:CDS 40.0%
!! AACCATTGGCTCTAGTTATG+GGG + chr7_4:21438288-21438307 Msa1144950:CDS 40.0%
TCACACACACCCTTACTATA+TGG - chr7_4:21438320-21438339 None:intergenic 40.0%
! TATAGTAAGGGTGTGTGTGA+AGG + chr7_4:21438320-21438339 Msa1144950:CDS 40.0%
! ATAGTAAGGGTGTGTGTGAA+GGG + chr7_4:21438321-21438340 Msa1144950:CDS 40.0%
CTAAAAACTATGAAGGCAGG+AGG + chr7_4:21438356-21438375 Msa1144950:CDS 40.0%
AGTTATTGTGCCTCCTGAAT+TGG + chr7_4:21438388-21438407 Msa1144950:CDS 40.0%
GTTATTGTGCCTCCTGAATT+GGG + chr7_4:21438389-21438408 Msa1144950:CDS 40.0%
TCTCTAAATCCCAATTCAGG+AGG - chr7_4:21438401-21438420 None:intergenic 40.0%
!! AGAGAGAATGGTGCTGATTT+AGG + chr7_4:21438416-21438435 Msa1144950:CDS 40.0%
!! GAGAGAATGGTGCTGATTTA+GGG + chr7_4:21438417-21438436 Msa1144950:CDS 40.0%
! TATTCAAGTGTTGCAAGTGG+AGG - chr7_4:21438458-21438477 None:intergenic 40.0%
! ACGTATTCAAGTGTTGCAAG+TGG - chr7_4:21438461-21438480 None:intergenic 40.0%
! GATGACTGGTTCTTGTATGG+GGG - chr7_4:21437609-21437628 None:intergenic 45.0%
! GTTGTTGACTGTGGAGATGA+TGG - chr7_4:21437685-21437704 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG - chr7_4:21437743-21437762 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG + chr7_4:21437785-21437804 Msa1144950:CDS 45.0%
GAATGTTGAGGAGGAGAAAG+AGG + chr7_4:21438039-21438058 Msa1144950:CDS 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG + chr7_4:21438230-21438249 Msa1144950:CDS 45.0%
GGGTCAAGGCCATATAGTAA+GGG + chr7_4:21438308-21438327 Msa1144950:CDS 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG + chr7_4:21438422-21438441 Msa1144950:CDS 45.0%
GAATCATCAAGCAGGTGCAA+TGG - chr7_4:21438504-21438523 None:intergenic 45.0%
! GCATGTACACTAGAGTGCTT+TGG + chr7_4:21438537-21438556 Msa1144950:three_prime_UTR 45.0%
! GATGACTGGTTCTTGTATGG+GGG - chr7_4:21437609-21437628 None:intergenic 45.0%
! GTTGTTGACTGTGGAGATGA+TGG - chr7_4:21437685-21437704 None:intergenic 45.0%
AGGAATCTGTTGCTGTGCTT+TGG - chr7_4:21437743-21437762 None:intergenic 45.0%
! CTAAGGTTGATTCCACAGAC+TGG + chr7_4:21437785-21437804 Msa1144950:CDS 45.0%
GAATGTTGAGGAGGAGAAAG+AGG + chr7_4:21438039-21438058 Msa1144950:CDS 45.0%
! ATGGGAAAGGTTGAAAGCAC+AGG + chr7_4:21438230-21438249 Msa1144950:CDS 45.0%
GGGTCAAGGCCATATAGTAA+GGG + chr7_4:21438308-21438327 Msa1144950:CDS 45.0%
!! AATGGTGCTGATTTAGGGTC+TGG + chr7_4:21438422-21438441 Msa1144950:CDS 45.0%
GAATCATCAAGCAGGTGCAA+TGG - chr7_4:21438504-21438523 None:intergenic 45.0%
! GCATGTACACTAGAGTGCTT+TGG + chr7_4:21438537-21438556 Msa1144950:three_prime_UTR 45.0%
!! TGTGGAGATGATGGACCTGA+GGG - chr7_4:21437676-21437695 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG + chr7_4:21437809-21437828 Msa1144950:CDS 50.0%
AAACCGTCTGGTCAAGGAAG+TGG - chr7_4:21437815-21437834 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG + chr7_4:21437814-21437833 Msa1144950:CDS 50.0%
TATGCCAAGGCGAGGTGATT+TGG + chr7_4:21438193-21438212 Msa1144950:CDS 50.0%
ACAACCAAATCACCTCGCCT+TGG - chr7_4:21438200-21438219 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG - chr7_4:21438293-21438312 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG + chr7_4:21438294-21438313 Msa1144950:CDS 50.0%
GGGGTCAAGGCCATATAGTA+AGG + chr7_4:21438307-21438326 Msa1144950:CDS 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG + chr7_4:21438427-21438446 Msa1144950:CDS 50.0%
!! TGTGGAGATGATGGACCTGA+GGG - chr7_4:21437676-21437695 None:intergenic 50.0%
! TTGCCACTTCCTTGACCAGA+CGG + chr7_4:21437809-21437828 Msa1144950:CDS 50.0%
AAACCGTCTGGTCAAGGAAG+TGG - chr7_4:21437815-21437834 None:intergenic 50.0%
ACTTCCTTGACCAGACGGTT+TGG + chr7_4:21437814-21437833 Msa1144950:CDS 50.0%
TATGCCAAGGCGAGGTGATT+TGG + chr7_4:21438193-21438212 Msa1144950:CDS 50.0%
ACAACCAAATCACCTCGCCT+TGG - chr7_4:21438200-21438219 None:intergenic 50.0%
GACCCCATAACTAGAGCCAA+TGG - chr7_4:21438293-21438312 None:intergenic 50.0%
!! TGGCTCTAGTTATGGGGTCA+AGG + chr7_4:21438294-21438313 Msa1144950:CDS 50.0%
GGGGTCAAGGCCATATAGTA+AGG + chr7_4:21438307-21438326 Msa1144950:CDS 50.0%
!! TGCTGATTTAGGGTCTGGTG+TGG + chr7_4:21438427-21438446 Msa1144950:CDS 50.0%
!! GATGATGGACCTGAGGGTTG+CGG - chr7_4:21437670-21437689 None:intergenic 55.0%
!! CTGTGGAGATGATGGACCTG+AGG - chr7_4:21437677-21437696 None:intergenic 55.0%
GGAAGTGGCAATCCAGTCTG+TGG - chr7_4:21437800-21437819 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG - chr7_4:21437821-21437840 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG + chr7_4:21437820-21437839 Msa1144950:CDS 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG + chr7_4:21437837-21437856 Msa1144950:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG + chr7_4:21438180-21438199 Msa1144950:CDS 55.0%
CTATGAAGGCAGGAGGGAAG+AGG + chr7_4:21438363-21438382 Msa1144950:CDS 55.0%
!! GATGATGGACCTGAGGGTTG+CGG - chr7_4:21437670-21437689 None:intergenic 55.0%
!! CTGTGGAGATGATGGACCTG+AGG - chr7_4:21437677-21437696 None:intergenic 55.0%
GGAAGTGGCAATCCAGTCTG+TGG - chr7_4:21437800-21437819 None:intergenic 55.0%
AAGGCCAAACCGTCTGGTCA+AGG - chr7_4:21437821-21437840 None:intergenic 55.0%
! TTGACCAGACGGTTTGGCCT+TGG + chr7_4:21437820-21437839 Msa1144950:CDS 55.0%
!! CCTTGGAGCTGGTCTTGCAT+GGG + chr7_4:21437837-21437856 Msa1144950:CDS 55.0%
! TCGGTGGTGGTGATATGCCA+AGG + chr7_4:21438180-21438199 Msa1144950:CDS 55.0%
CTATGAAGGCAGGAGGGAAG+AGG + chr7_4:21438363-21438382 Msa1144950:CDS 55.0%
GGTTGCGGTTGTTGTGGTGG+AGG - chr7_4:21437655-21437674 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG - chr7_4:21437658-21437677 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG - chr7_4:21437661-21437680 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG + chr7_4:21437658-21437677 Msa1144950:CDS 60.0%
AGCTCCAAGGCCAAACCGTC+TGG - chr7_4:21437827-21437846 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG + chr7_4:21437826-21437845 Msa1144950:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG + chr7_4:21437836-21437855 Msa1144950:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG - chr7_4:21437840-21437859 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG + chr7_4:21437841-21437860 Msa1144950:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG + chr7_4:21438185-21438204 Msa1144950:CDS 60.0%
GGTTGCGGTTGTTGTGGTGG+AGG - chr7_4:21437655-21437674 None:intergenic 60.0%
GAGGGTTGCGGTTGTTGTGG+TGG - chr7_4:21437658-21437677 None:intergenic 60.0%
CCTGAGGGTTGCGGTTGTTG+TGG - chr7_4:21437661-21437680 None:intergenic 60.0%
CCACAACAACCGCAACCCTC+AGG + chr7_4:21437658-21437677 Msa1144950:CDS 60.0%
AGCTCCAAGGCCAAACCGTC+TGG - chr7_4:21437827-21437846 None:intergenic 60.0%
!! AGACGGTTTGGCCTTGGAGC+TGG + chr7_4:21437826-21437845 Msa1144950:CDS 60.0%
!! GCCTTGGAGCTGGTCTTGCA+TGG + chr7_4:21437836-21437855 Msa1144950:CDS 60.0%
CCCATGCAAGACCAGCTCCA+AGG - chr7_4:21437840-21437859 None:intergenic 60.0%
!! GGAGCTGGTCTTGCATGGGT+TGG + chr7_4:21437841-21437860 Msa1144950:CDS 60.0%
GGTGGTGATATGCCAAGGCG+AGG + chr7_4:21438185-21438204 Msa1144950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 21437530 21438805 21437530 ID=Msa1144950;Name=Msa1144950
chr7_4 mRNA 21437530 21438805 21437530 ID=Msa1144950-mRNA-1;Parent=Msa1144950;Name=Msa1144950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38|1|1|1|1|1|3|288|256
chr7_4 exon 21437530 21437938 21437530 ID=Msa1144950-mRNA-1:exon:5141;Parent=Msa1144950-mRNA-1
chr7_4 exon 21438039 21438083 21438039 ID=Msa1144950-mRNA-1:exon:5142;Parent=Msa1144950-mRNA-1
chr7_4 exon 21438163 21438805 21438163 ID=Msa1144950-mRNA-1:exon:5143;Parent=Msa1144950-mRNA-1
chr7_4 five_prime_UTR 21437530 21437567 21437530 ID=Msa1144950-mRNA-1:five_prime_utr;Parent=Msa1144950-mRNA-1
chr7_4 CDS 21437568 21437938 21437568 ID=Msa1144950-mRNA-1:cds;Parent=Msa1144950-mRNA-1
chr7_4 CDS 21438039 21438083 21438039 ID=Msa1144950-mRNA-1:cds;Parent=Msa1144950-mRNA-1
chr7_4 CDS 21438163 21438517 21438163 ID=Msa1144950-mRNA-1:cds;Parent=Msa1144950-mRNA-1
chr7_4 three_prime_UTR 21438518 21438805 21438518 ID=Msa1144950-mRNA-1:three_prime_utr;Parent=Msa1144950-mRNA-1
Gene Sequence

>Msa1144950

ATGGCCACTATCTTTGGTTCCTCATCAATTTTCTTACTCCCCCATACAAGAACCAGTCATCACATCACTTCTTCATCAGCAACTCCTCCACCACAACAACCGCAACCCTCAGGTCCATCATCTCCACAGTCAACAACAAATTTGAATGAAGATCAGTCAGTGCAAGTCTCTGCCAAAGCACAGCAACAGATTCCTATTAAACCAGTTGTTTCATCAACTAAGGTTGATTCCACAGACTGGATTGCCACTTCCTTGACCAGACGGTTTGGCCTTGGAGCTGGTCTTGCATGGGTTGGTTTTCTTGCATTTGGTGTTGTCTCAGAACAAATAAAAACTCGCCTTGAGGTTTCACAACAAGAGTCTAATACAAGGAATGTTGAGGAGGAGAAAGAGGTGATTCTGCCTAATGGCATAAGGTACTATGAATTGAAAATCGGTGGTGGTGATATGCCAAGGCGAGGTGATTTGGTTGTGATTGATATAATGGGAAAGGTTGAAAGCACAGGAGAAGTGTTTGTGAACACATTTGAAGGAGACAAGAAACCATTGGCTCTAGTTATGGGGTCAAGGCCATATAGTAAGGGTGTGTGTGAAGGGATTGAATATGTACTAAAAACTATGAAGGCAGGAGGGAAGAGGAAAGTTATTGTGCCTCCTGAATTGGGATTTAGAGAGAATGGTGCTGATTTAGGGTCTGGTGTGGAAATTCCTCCACTTGCAACACTTGAATACGTTGTACAGGTTGATAAAGTGTCCATTGCACCTGCTTGA

Protein sequence

>Msa1144950

MATIFGSSSIFLLPHTRTSHHITSSSATPPPQQPQPSGPSSPQSTTNLNEDQSVQVSAKAQQQIPIKPVVSSTKVDSTDWIATSLTRRFGLGAGLAWVGFLAFGVVSEQIKTRLEVSQQESNTRNVEEEKEVILPNGIRYYELKIGGGDMPRRGDLVVIDIMGKVESTGEVFVNTFEGDKKPLALVMGSRPYSKGVCEGIEYVLKTMKAGGKRKVIVPPELGFRENGADLGSGVEIPPLATLEYVVQVDKVSIAPA*