AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280140 MtrunA17_Chr2g0293821 96.755 339 10 1 1 338 68 406 0.0 660
Msa0280140 MtrunA17_Chr1g0201261 30.244 205 134 4 91 289 275 476 3.99e-24 102
Msa0280140 MtrunA17_Chr3g0122171 27.368 190 120 3 93 264 94 283 1.29e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280140 AT5G30510.1 77.286 339 75 1 1 337 75 413 0.0 551
Msa0280140 AT1G71720.1 33.171 205 128 4 91 289 261 462 2.64e-25 106
Msa0280140 AT3G23700.1 31.667 180 105 4 103 264 97 276 1.73e-22 97.4
Msa0280140 AT1G71720.2 32.500 160 100 3 91 244 261 418 5.01e-18 85.1
Msa0280140 AT5G14580.1 39.806 103 51 3 163 264 660 752 1.27e-11 66.2
Msa0280140 AT3G11964.1 28.758 153 100 4 186 334 1431 1578 6.06e-11 64.3
Msa0280140 AT3G11964.2 28.758 153 100 4 186 334 1455 1602 6.29e-11 64.3

Find 114 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCTCTTTCTTTGTTAT+TGG 0.111293 2_3:-14486871 None:intergenic
ATGAGAATGCCTCTATTTAT+AGG 0.203153 2_3:+14490636 Msa0280140:three_prime_UTR
CTTGAGTTTAAGAGATATTC+AGG 0.242101 2_3:+14488444 Msa0280140:CDS
CTGGTTTGGTTTCAGGTTAA+GGG 0.265794 2_3:+14488238 Msa0280140:intron
CAGGTTAAGGGCACTGTGTT+TGG 0.314966 2_3:+14488250 Msa0280140:intron
CGAATACAAGCGTTGGATTA+CGG 0.315930 2_3:-14489647 None:intergenic
CTCAATCATTATCCTTCAGC+TGG 0.327818 2_3:-14490343 None:intergenic
CAAAGGCGCCATATGGCTTT+AGG 0.331805 2_3:-14489356 None:intergenic
AACAAGTTCCTCAAATATAC+AGG 0.341352 2_3:-14490517 None:intergenic
TTTCAAGAGCTTCTGTAAAC+TGG 0.350843 2_3:-14486968 None:intergenic
GGATAAGTCTGGCTTGTTCC+TGG 0.356772 2_3:-14489257 None:intergenic
AAAGAGGAATTTGTAATTGT+TGG 0.366149 2_3:+14488394 Msa0280140:CDS
GTCGACATTGGTGGAATTAG+TGG 0.377742 2_3:+14489378 Msa0280140:CDS
GGCTGAAGTTGAAGGCCTTA+AGG 0.383122 2_3:+14488771 Msa0280140:CDS
CATAGAGCAAGGTGGAATAA+TGG 0.390869 2_3:-14490392 None:intergenic
GCTGAAGTTGAAGGCCTTAA+GGG 0.395706 2_3:+14488772 Msa0280140:CDS
TCCACCTCCACAAACTTTAG+AGG 0.398733 2_3:-14489234 None:intergenic
CTCAGCAGTGACGGGATCTT+AGG 0.401069 2_3:+14490268 Msa0280140:CDS
TCCTCTAAAGTTTGTGGAGG+TGG 0.403941 2_3:+14489233 Msa0280140:CDS
GAAGAAGCAGGCATAGTTCC+TGG 0.411560 2_3:+14488367 Msa0280140:CDS
AGACTTGCCGCCAGAGGGAC+TGG 0.417394 2_3:+14490303 Msa0280140:CDS
AGAAGAGATTATTGAGTTTG+AGG 0.422123 2_3:+14489209 Msa0280140:CDS
ATCCAATTCCTAGTTGTCCT+TGG 0.432048 2_3:-14489308 None:intergenic
CAGATTATTGATGCAAATAA+AGG 0.442156 2_3:+14488739 Msa0280140:intron
ATCCAAGGACAACTAGGAAT+TGG 0.443348 2_3:+14489306 Msa0280140:CDS
TGTAGGTTCCAACTTCTTTG+TGG 0.443531 2_3:-14489610 None:intergenic
ACTATTGCCCTGTATATTTG+AGG 0.447125 2_3:+14490509 Msa0280140:three_prime_UTR
TGAGGTTCCTCTAAAGTTTG+TGG 0.448327 2_3:+14489227 Msa0280140:CDS
TCCTAGTTGTCCTTGGATGC+CGG 0.460240 2_3:-14489301 None:intergenic
GGATGCCGGCTACGGCTTTG+CGG 0.464033 2_3:-14489287 None:intergenic
GTGCAAAGCCTAAAGCCATA+TGG 0.465137 2_3:+14489348 Msa0280140:CDS
AGCCACCGCAAAGCCGTAGC+CGG 0.475388 2_3:+14489282 Msa0280140:CDS
CTTTAGGCTTTGCACAGTGC+CGG 0.475744 2_3:-14489340 None:intergenic
AAGGTGGAATAATGGCAAAA+AGG 0.477657 2_3:-14490384 None:intergenic
ATGTCGACAAAGGCGCCATA+TGG 0.479823 2_3:-14489363 None:intergenic
CTACGGCTTTGCGGTGGCTA+AGG 0.480015 2_3:-14489278 None:intergenic
TGGCTCGTGCTGATATGCTT+AGG 0.493754 2_3:+14490001 Msa0280140:CDS
ACCGTTGACATCTGTGAGAA+TGG 0.495475 2_3:-14488802 None:intergenic
AGAATGGAACAAATCCCTTA+AGG 0.501700 2_3:-14488786 None:intergenic
GGCGCCTTTGTCGACATTGG+TGG 0.504154 2_3:+14489369 Msa0280140:CDS
AACAAGCAAATACCTCTGGC+TGG 0.506114 2_3:-14490026 None:intergenic
AAAGTTTGTGGAGGTGGACC+AGG 0.506690 2_3:+14489239 Msa0280140:CDS
ATATATAAGCCTATAAATAG+AGG 0.509923 2_3:-14490645 None:intergenic
TCAATCATTATCCTTCAGCT+GGG 0.512179 2_3:-14490342 None:intergenic
ATATTCAGGCTGAGCTTGCA+TGG 0.513898 2_3:+14488458 Msa0280140:CDS
CAGCTGAAGGATAATGATTG+AGG 0.515085 2_3:+14490344 Msa0280140:exon
ACAAATTCCTCTTTCACGCC+AGG 0.517325 2_3:-14488385 None:intergenic
CATAGTTCCTGGCGTGAAAG+AGG 0.517603 2_3:+14488378 Msa0280140:CDS
AAGTCTTTCCACAAAGAAGT+TGG 0.524278 2_3:+14489602 Msa0280140:CDS
TTGTCCTTGGATGCCGGCTA+CGG 0.530588 2_3:-14489295 None:intergenic
AGCAGAAGATGCTGTTGTCA+AGG 0.532605 2_3:+14488501 Msa0280140:CDS
AGCTGAAGGATAATGATTGA+GGG 0.533178 2_3:+14490345 Msa0280140:exon
TTTCTTATAGGCGGAGGAGA+TGG 0.533602 2_3:+14489939 Msa0280140:intron
CTTAGGCATGTAGAAGAAGC+AGG 0.540089 2_3:+14488355 Msa0280140:CDS
TATGGCGCCTTTGTCGACAT+TGG 0.542516 2_3:+14489366 Msa0280140:CDS
AGGCTGAGCTTGCATGGGAA+AGG 0.542586 2_3:+14488464 Msa0280140:CDS
TCACTCAGATCCAGTCCCTC+TGG 0.542917 2_3:-14490313 None:intergenic
AAAGCCGTAGCCGGCATCCA+AGG 0.543780 2_3:+14489291 Msa0280140:CDS
AGATGCTGTTGTCAAGGGTA+AGG 0.545420 2_3:+14488507 Msa0280140:CDS
TGAGTCTGAAATTGGAACCA+AGG 0.547889 2_3:+14487001 Msa0280140:CDS
AACTCAATAATCTCTTCTCC+CGG 0.548474 2_3:-14489204 None:intergenic
ACCTTCTCGAATACAAGCGT+TGG 0.548772 2_3:-14489654 None:intergenic
AACAAAAGCTCCACTAGTAT+CGG 0.548885 2_3:-14488275 None:intergenic
GATTAACTCTCAGCAGTGAC+GGG 0.550527 2_3:+14490260 Msa0280140:CDS
ACGTTGTCGTACTGCTCCAA+TGG 0.554804 2_3:+14486923 Msa0280140:exon
GCGGTGGCTAAGGATAAGTC+TGG 0.558220 2_3:-14489268 None:intergenic
GGTGTGGTGGCTGAAGTTGA+AGG 0.562756 2_3:+14488763 Msa0280140:CDS
CTACATGCCTAAGTTTGTAG+AGG 0.566419 2_3:-14488345 None:intergenic
TTAAGTCATGACCGCGAGAG+AGG 0.568064 2_3:+14489573 Msa0280140:CDS
AATAGCGCAAGCAGAAGCCA+TGG 0.569153 2_3:+14489981 Msa0280140:CDS
AAGCATATCAGCACGAGCCA+TGG 0.569475 2_3:-14489998 None:intergenic
GGTCAAAATGAAATTGATGA+TGG 0.574050 2_3:+14488415 Msa0280140:CDS
AAGAAGTTGGAACCTACACC+TGG 0.576278 2_3:+14489615 Msa0280140:CDS
TGACATTACTTCAAAGTCCA+CGG 0.579638 2_3:+14488297 Msa0280140:CDS
GGATTACGGATCATATCTCC+AGG 0.580645 2_3:-14489633 None:intergenic
GCAGAAGATGCTGTTGTCAA+GGG 0.582875 2_3:+14488502 Msa0280140:CDS
GTAAACGAAACACCTTCCAT+TGG 0.585546 2_3:-14486939 None:intergenic
TAATTTGACTGACATGAAGA+AGG 0.587239 2_3:-14489401 None:intergenic
GGTTCAGACTTGCCGCCAGA+GGG 0.588733 2_3:+14490298 Msa0280140:CDS
GGTTCCTCTAAAGTTTGTGG+AGG 0.589105 2_3:+14489230 Msa0280140:CDS
AGGCGAGCCTCTACAAACTT+AGG 0.590454 2_3:+14488338 Msa0280140:CDS
GGCTTACTTGCCGCTACGAG+AGG 0.590952 2_3:+14488318 Msa0280140:CDS
TGTCGTACTGCTCCAATGGA+AGG 0.591894 2_3:+14486927 Msa0280140:exon
GACGGGATCTTAGGACCACT+TGG 0.593072 2_3:+14490277 Msa0280140:CDS
CGGATCATATCTCCAGGTGT+AGG 0.593928 2_3:-14489627 None:intergenic
GCCGGCATCCAAGGACAACT+AGG 0.598178 2_3:+14489300 Msa0280140:CDS
CAATCATTATCCTTCAGCTG+GGG 0.598240 2_3:-14490341 None:intergenic
ATTGCAACTGTTCTTCAACC+TGG 0.598301 2_3:+14489444 Msa0280140:CDS
GGATTAACTCTCAGCAGTGA+CGG 0.600398 2_3:+14490259 Msa0280140:CDS
TATTCAGGCTGAGCTTGCAT+GGG 0.601092 2_3:+14488459 Msa0280140:CDS
TGCCGGCTACGGCTTTGCGG+TGG 0.601418 2_3:-14489284 None:intergenic
TCAACCTGGTGATACTCTGA+AGG 0.607339 2_3:+14489458 Msa0280140:CDS
TCCATTCTCACAGATGTCAA+CGG 0.609353 2_3:+14488801 Msa0280140:CDS
ATTGGCGCTTGTAATTGCAA+TGG 0.609770 2_3:-14486853 None:intergenic
AATCATTATCCTTCAGCTGG+GGG 0.610002 2_3:-14490340 None:intergenic
GACTTACACGACCTCTCTCG+CGG 0.618963 2_3:-14489584 None:intergenic
ATTATTGATGCAAATAAAGG+TGG 0.619527 2_3:+14488742 Msa0280140:CDS
TCGTAGCGGCAAGTAAGCCG+TGG 0.619880 2_3:-14488314 None:intergenic
TGGTTCAGACTTGCCGCCAG+AGG 0.622339 2_3:+14490297 Msa0280140:CDS
GGAATTGGATCAGTTGTCAC+CGG 0.623309 2_3:+14489321 Msa0280140:CDS
ACAAGTTCCTCAAATATACA+GGG 0.623874 2_3:-14490516 None:intergenic
TGCAAATAAAGGTGGTGTGG+TGG 0.633576 2_3:+14488750 Msa0280140:CDS
AATTCCACCAATGTCGACAA+AGG 0.636907 2_3:-14489373 None:intergenic
GTGTTTGGCACCGATACTAG+TGG 0.637091 2_3:+14488265 Msa0280140:CDS
TTTACCTTCAGAGTATCACC+AGG 0.639151 2_3:-14489462 None:intergenic
CTACAACAATACATAGAGCA+AGG 0.642676 2_3:-14490403 None:intergenic
TCCAACGCTTGTATTCGAGA+AGG 0.655139 2_3:+14489653 Msa0280140:CDS
TGATGCAAATAAAGGTGGTG+TGG 0.659116 2_3:+14488747 Msa0280140:CDS
TATGCTTAGGTTCCAGCCAG+AGG 0.664471 2_3:+14490014 Msa0280140:CDS
GGCGGCAAGTCTGAACCAAG+TGG 0.672418 2_3:-14490292 None:intergenic
CTCAGATCCAGTCCCTCTGG+CGG 0.676022 2_3:-14490310 None:intergenic
TAGAGGCTCGCCTCTCGTAG+CGG 0.684086 2_3:-14488328 None:intergenic
TAATGATTGAGGGAATTCAG+AGG 0.705206 2_3:+14490355 Msa0280140:exon
CAACAATACATAGAGCAAGG+TGG 0.714692 2_3:-14490400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAAGTAATTTTATTTTA+TGG - chr2_3:14487715-14487734 None:intergenic 10.0%
!!! TTTTATGTATTTTAACTATT+AGG + chr2_3:14487866-14487885 Msa0280140:intron 10.0%
!!! TTTTTATGCTATTTTAATTT+TGG - chr2_3:14490131-14490150 None:intergenic 10.0%
!!! TTTTAAGATGAATTTTGATT+TGG + chr2_3:14487061-14487080 Msa0280140:intron 15.0%
!!! TTTAAGATGAATTTTGATTT+GGG + chr2_3:14487062-14487081 Msa0280140:intron 15.0%
!!! CTTTGTATTTTATTGAATTT+TGG + chr2_3:14487109-14487128 Msa0280140:intron 15.0%
!!! TTTTGGATTTTTTTAGTTTA+TGG + chr2_3:14487126-14487145 Msa0280140:intron 15.0%
!!! TTGTTTTTTTTGTAGAATTT+TGG + chr2_3:14487282-14487301 Msa0280140:intron 15.0%
!!! TGGATTTTTTTAATTTATGA+TGG + chr2_3:14487302-14487321 Msa0280140:intron 15.0%
!!! TTAATTTATGATGGATAAAA+AGG + chr2_3:14487311-14487330 Msa0280140:intron 15.0%
!!! TAATTTATGATGGATAAAAA+GGG + chr2_3:14487312-14487331 Msa0280140:intron 15.0%
!! ATAAACAATATTATACTGTA+AGG - chr2_3:14487483-14487502 None:intergenic 15.0%
!! TTACAGTATAATATTGTTTA+TGG + chr2_3:14487482-14487501 Msa0280140:intron 15.0%
!!! TTTGCAATTTTATATTTTCA+AGG + chr2_3:14488083-14488102 Msa0280140:intron 15.0%
!!! TAAACTTCTAATTTTGATAA+GGG - chr2_3:14489133-14489152 None:intergenic 15.0%
!!! ATACATTGTTAACTTTTAAT+CGG + chr2_3:14489908-14489927 Msa0280140:intron 15.0%
!! ACAAAAGAAAAAATAACAAT+AGG - chr2_3:14490438-14490457 None:intergenic 15.0%
!! TGTTGAATTAATAATGTTTG+TGG + chr2_3:14487036-14487055 Msa0280140:intron 20.0%
!!! TTAAGATGAATTTTGATTTG+GGG + chr2_3:14487063-14487082 Msa0280140:intron 20.0%
!!! TTTTTTAGTTTATGGTGAAA+AGG + chr2_3:14487134-14487153 Msa0280140:intron 20.0%
!!! TTTTTAGTTTATGGTGAAAA+GGG + chr2_3:14487135-14487154 Msa0280140:intron 20.0%
!!! AATTTATGATGGATAAAAAG+GGG + chr2_3:14487313-14487332 Msa0280140:intron 20.0%
!! ATTGTATATGAACAAGAAAA+TGG + chr2_3:14487403-14487422 Msa0280140:intron 20.0%
!! TTGTATATGAACAAGAAAAT+GGG + chr2_3:14487404-14487423 Msa0280140:intron 20.0%
!! TTTCAATTGAATTGAGTATT+TGG + chr2_3:14487437-14487456 Msa0280140:intron 20.0%
!!! ACACATTGTTAGTAATTTTA+TGG - chr2_3:14488064-14488083 None:intergenic 20.0%
!! GCTTGAAAAATAATCATTAA+AGG - chr2_3:14488158-14488177 None:intergenic 20.0%
!!! GTAATTAATCTGAAATAGAT+TGG + chr2_3:14488206-14488225 Msa0280140:intron 20.0%
!!! GATGCAATATATTTTATTTG+TGG + chr2_3:14488968-14488987 Msa0280140:intron 20.0%
!!! AAACTTCTAATTTTGATAAG+GGG - chr2_3:14489132-14489151 None:intergenic 20.0%
!!! CTAAACTTCTAATTTTGATA+AGG - chr2_3:14489134-14489153 None:intergenic 20.0%
!! ATCTCATTCTTTATATGATT+AGG + chr2_3:14489542-14489561 Msa0280140:intron 20.0%
!! GAAAATAATCAAAGAAAGTT+AGG - chr2_3:14489848-14489867 None:intergenic 20.0%
!! ATATATAAGCCTATAAATAG+AGG - chr2_3:14490648-14490667 None:intergenic 20.0%
!!! TATGATTTTGAGTCTGAAAT+TGG + chr2_3:14486993-14487012 Msa0280140:CDS 25.0%
!!! TTTTAAGATGAATTTTGACG+AGG + chr2_3:14487232-14487251 Msa0280140:intron 25.0%
!!! TTTAAGATGAATTTTGACGA+GGG + chr2_3:14487233-14487252 Msa0280140:intron 25.0%
! GAGATAGTTAAGTTAATTTC+TGG + chr2_3:14487516-14487535 Msa0280140:intron 25.0%
!!! GTGTCTTTTTTTAGTCATTT+TGG + chr2_3:14487628-14487647 Msa0280140:intron 25.0%
!! TTAAGAGTAAACAGTCATTT+TGG - chr2_3:14487812-14487831 None:intergenic 25.0%
! ACTAACTAAAAACACATTTG+AGG - chr2_3:14488000-14488019 None:intergenic 25.0%
! TAAAGGCTAAACATTCAATT+GGG - chr2_3:14488141-14488160 None:intergenic 25.0%
! TTAAAGGCTAAACATTCAAT+TGG - chr2_3:14488142-14488161 None:intergenic 25.0%
! TGAAAGAACTATTCATATTG+AGG + chr2_3:14488184-14488203 Msa0280140:intron 25.0%
! AAAGAGGAATTTGTAATTGT+TGG + chr2_3:14488394-14488413 Msa0280140:CDS 25.0%
! AAAACTGTTCATATCCATTT+AGG + chr2_3:14488661-14488680 Msa0280140:intron 25.0%
! CATATGAGTGAAAAAGAAAT+TGG - chr2_3:14488705-14488724 None:intergenic 25.0%
! CAGATTATTGATGCAAATAA+AGG + chr2_3:14488739-14488758 Msa0280140:intron 25.0%
! ATTATTGATGCAAATAAAGG+TGG + chr2_3:14488742-14488761 Msa0280140:CDS 25.0%
! TTGAATCAAAACTTGTCATT+TGG + chr2_3:14488865-14488884 Msa0280140:intron 25.0%
! TGCGAAGAAAATAGATAAAA+GGG - chr2_3:14489177-14489196 None:intergenic 25.0%
! ATATCGATGAATTGTATTAC+AGG - chr2_3:14489488-14489507 None:intergenic 25.0%
!! AATAACAAAGCTAAGCATTT+TGG - chr2_3:14489814-14489833 None:intergenic 25.0%
!!! TCGGTTGATTTTTTTCTTAT+AGG + chr2_3:14489927-14489946 Msa0280140:intron 25.0%
!!! GTTGATTTTTTTCTTATAGG+CGG + chr2_3:14489930-14489949 Msa0280140:intron 25.0%
! ACTTCAGAGTTAAAAATTGA+AGG + chr2_3:14490581-14490600 Msa0280140:three_prime_UTR 25.0%
! CTTTGCTCTTTCTTTGTTAT+TGG - chr2_3:14486874-14486893 None:intergenic 30.0%
CAACAAAAAAAAACTTGCCT+TGG - chr2_3:14487021-14487040 None:intergenic 30.0%
!! TTAAGATGAATTTTGACGAG+GGG + chr2_3:14487234-14487253 Msa0280140:intron 30.0%
! ACATTTTCCTCACAAACATT+AGG - chr2_3:14487377-14487396 None:intergenic 30.0%
TTACTTACAAAAGAGACACT+TGG + chr2_3:14487725-14487744 Msa0280140:intron 30.0%
TACTCTTAATATCTGACCAA+CGG + chr2_3:14487823-14487842 Msa0280140:intron 30.0%
CTAAAAATAATTTCCACCGT+TGG - chr2_3:14487842-14487861 None:intergenic 30.0%
CACACATTTAGAGAACAAAA+TGG - chr2_3:14487899-14487918 None:intergenic 30.0%
! AACATCCCGAAATATCTTTT+TGG + chr2_3:14487960-14487979 Msa0280140:intron 30.0%
ACTAGCCAAAAAGATATTTC+GGG - chr2_3:14487968-14487987 None:intergenic 30.0%
! GACTAGCCAAAAAGATATTT+CGG - chr2_3:14487969-14487988 None:intergenic 30.0%
!!! ATCTTTTTGGCTAGTCATTT+TGG + chr2_3:14487973-14487992 Msa0280140:intron 30.0%
GGTCAAAATGAAATTGATGA+TGG + chr2_3:14488415-14488434 Msa0280140:CDS 30.0%
CTTGAGTTTAAGAGATATTC+AGG + chr2_3:14488444-14488463 Msa0280140:CDS 30.0%
AGTGAAAAAGAAATTGGTAG+GGG - chr2_3:14488699-14488718 None:intergenic 30.0%
GAGTGAAAAAGAAATTGGTA+GGG - chr2_3:14488700-14488719 None:intergenic 30.0%
TGAGTGAAAAAGAAATTGGT+AGG - chr2_3:14488701-14488720 None:intergenic 30.0%
! ACTCATATGTGTAATTTGTG+TGG + chr2_3:14488716-14488735 Msa0280140:intron 30.0%
ACGTTCATAAATGTCAAAGT+AGG - chr2_3:14488838-14488857 None:intergenic 30.0%
! TGTCATTTGGCAAGTAAAAA+AGG + chr2_3:14488878-14488897 Msa0280140:intron 30.0%
!! ATTTGCAATCTTTAGAGCTT+AGG - chr2_3:14488937-14488956 None:intergenic 30.0%
AGTTCCATCATAGATAGTAT+AGG - chr2_3:14489018-14489037 None:intergenic 30.0%
CTGCGAAGAAAATAGATAAA+AGG - chr2_3:14489178-14489197 None:intergenic 30.0%
AGAAGAGATTATTGAGTTTG+AGG + chr2_3:14489209-14489228 Msa0280140:CDS 30.0%
TAATTTGACTGACATGAAGA+AGG - chr2_3:14489404-14489423 None:intergenic 30.0%
CGATATTTGAATAGAGTTAC+AGG + chr2_3:14489502-14489521 Msa0280140:intron 30.0%
GAATATCATATCAGTAGTCA+TGG + chr2_3:14489736-14489755 Msa0280140:intron 30.0%
AATTAACAAGCAAATACCTC+TGG - chr2_3:14490033-14490052 None:intergenic 30.0%
!! TTATTGTTTGTTTTCCAGAG+TGG + chr2_3:14490238-14490257 Msa0280140:intron 30.0%
GAATAATGGCAAAAAGGTAA+AGG - chr2_3:14490381-14490400 None:intergenic 30.0%
! TTTTCAATTTTACACTGTCG+AGG - chr2_3:14490479-14490498 None:intergenic 30.0%
ACAAGTTCCTCAAATATACA+GGG - chr2_3:14490519-14490538 None:intergenic 30.0%
AACAAGTTCCTCAAATATAC+AGG - chr2_3:14490520-14490539 None:intergenic 30.0%
ATGAGAATGCCTCTATTTAT+AGG + chr2_3:14490636-14490655 Msa0280140:three_prime_UTR 30.0%
TTTCAAGAGCTTCTGTAAAC+TGG - chr2_3:14486971-14486990 None:intergenic 35.0%
!! GTAGAATGGACATGTTTTTG+AGG + chr2_3:14487340-14487359 Msa0280140:intron 35.0%
TGGATTACCTAATGTTTGTG+AGG + chr2_3:14487367-14487386 Msa0280140:intron 35.0%
TTGAATGTGTGTTCTGTTAG+TGG + chr2_3:14487682-14487701 Msa0280140:intron 35.0%
! GTTACTTTAGTCCTCAAATG+TGG + chr2_3:14488018-14488037 Msa0280140:intron 35.0%
TGACAACGTCTTACATATTG+AGG + chr2_3:14488113-14488132 Msa0280140:intron 35.0%
GACAACGTCTTACATATTGA+GGG + chr2_3:14488114-14488133 Msa0280140:intron 35.0%
AACAAAAGCTCCACTAGTAT+CGG - chr2_3:14488278-14488297 None:intergenic 35.0%
TGACATTACTTCAAAGTCCA+CGG + chr2_3:14488297-14488316 Msa0280140:CDS 35.0%
GGAGAAAATCAACTCCTAAA+TGG - chr2_3:14488678-14488697 None:intergenic 35.0%
AGAATGGAACAAATCCCTTA+AGG - chr2_3:14488789-14488808 None:intergenic 35.0%
! GGCAAGTAAAAAAGGTACAA+TGG + chr2_3:14488886-14488905 Msa0280140:intron 35.0%
ACAATGGCTATTGAGAGAAA+TGG + chr2_3:14488902-14488921 Msa0280140:intron 35.0%
TCATAGATAGTATAGGAAGG+TGG - chr2_3:14489011-14489030 None:intergenic 35.0%
CCATCATAGATAGTATAGGA+AGG - chr2_3:14489014-14489033 None:intergenic 35.0%
CCTTCCTATACTATCTATGA+TGG + chr2_3:14489011-14489030 Msa0280140:intron 35.0%
! ATTTTCTTCGCAGAAAACAC+CGG + chr2_3:14489185-14489204 Msa0280140:intron 35.0%
AACTCAATAATCTCTTCTCC+CGG - chr2_3:14489207-14489226 None:intergenic 35.0%
AAGTCTTTCCACAAAGAAGT+TGG + chr2_3:14489602-14489621 Msa0280140:CDS 35.0%
!!! TAAGCATTTTGGCTTCTTGT+AGG - chr2_3:14489803-14489822 None:intergenic 35.0%
!! GCTATTGAAAAGTGTTGAAG+TGG - chr2_3:14489870-14489889 None:intergenic 35.0%
!!! GATTTTTTTCTTATAGGCGG+AGG + chr2_3:14489933-14489952 Msa0280140:intron 35.0%
AAAACTATTCAGCAGTAGAG+TGG - chr2_3:14490156-14490175 None:intergenic 35.0%
TCAATCATTATCCTTCAGCT+GGG - chr2_3:14490345-14490364 None:intergenic 35.0%
AGCTGAAGGATAATGATTGA+GGG + chr2_3:14490345-14490364 Msa0280140:exon 35.0%
TAATGATTGAGGGAATTCAG+AGG + chr2_3:14490355-14490374 Msa0280140:exon 35.0%
AAGGTGGAATAATGGCAAAA+AGG - chr2_3:14490387-14490406 None:intergenic 35.0%
CTACAACAATACATAGAGCA+AGG - chr2_3:14490406-14490425 None:intergenic 35.0%
ACTATTGCCCTGTATATTTG+AGG + chr2_3:14490509-14490528 Msa0280140:three_prime_UTR 35.0%
ATTGGCGCTTGTAATTGCAA+TGG - chr2_3:14486856-14486875 None:intergenic 40.0%
GTAAACGAAACACCTTCCAT+TGG - chr2_3:14486942-14486961 None:intergenic 40.0%
! TGAGTCTGAAATTGGAACCA+AGG + chr2_3:14487001-14487020 Msa0280140:CDS 40.0%
!! TAAAAAGGGGTGCTGTAGAA+TGG + chr2_3:14487326-14487345 Msa0280140:intron 40.0%
!!! GGACATGTTTTTGAGGTTTG+TGG + chr2_3:14487347-14487366 Msa0280140:intron 40.0%
!! TCTGGAGTGAACAGTCATTT+TGG + chr2_3:14487534-14487553 Msa0280140:intron 40.0%
GACGTTGTCTCACACATATA+AGG - chr2_3:14487561-14487580 None:intergenic 40.0%
!! GTGTGTTCTGTTAGTGGATT+TGG + chr2_3:14487688-14487707 Msa0280140:intron 40.0%
! TTTTGGTCTCCACATGAATG+AGG - chr2_3:14487795-14487814 None:intergenic 40.0%
TCTTAATATCTGACCAACGG+TGG + chr2_3:14487826-14487845 Msa0280140:intron 40.0%
TCCTCAAATGTGGATTTCGT+TGG + chr2_3:14488028-14488047 Msa0280140:intron 40.0%
ACCAACGAAATCCACATTTG+AGG - chr2_3:14488032-14488051 None:intergenic 40.0%
!! CTGGTTTGGTTTCAGGTTAA+GGG + chr2_3:14488238-14488257 Msa0280140:intron 40.0%
CTACATGCCTAAGTTTGTAG+AGG - chr2_3:14488348-14488367 None:intergenic 40.0%
TGATGCAAATAAAGGTGGTG+TGG + chr2_3:14488747-14488766 Msa0280140:CDS 40.0%
TCCATTCTCACAGATGTCAA+CGG + chr2_3:14488801-14488820 Msa0280140:CDS 40.0%
!!! GGGAAAGAGTTTTGAGTTGT+TGG - chr2_3:14489157-14489176 None:intergenic 40.0%
! TTTTCTTCGCAGAAAACACC+GGG + chr2_3:14489186-14489205 Msa0280140:intron 40.0%
!! TGAGGTTCCTCTAAAGTTTG+TGG + chr2_3:14489227-14489246 Msa0280140:CDS 40.0%
ATCCAAGGACAACTAGGAAT+TGG + chr2_3:14489306-14489325 Msa0280140:CDS 40.0%
ATCCAATTCCTAGTTGTCCT+TGG - chr2_3:14489311-14489330 None:intergenic 40.0%
AATTCCACCAATGTCGACAA+AGG - chr2_3:14489376-14489395 None:intergenic 40.0%
ATTGCAACTGTTCTTCAACC+TGG + chr2_3:14489444-14489463 Msa0280140:CDS 40.0%
! TTTACCTTCAGAGTATCACC+AGG - chr2_3:14489465-14489484 None:intergenic 40.0%
TGTAGGTTCCAACTTCTTTG+TGG - chr2_3:14489613-14489632 None:intergenic 40.0%
!! CGAATACAAGCGTTGGATTA+CGG - chr2_3:14489650-14489669 None:intergenic 40.0%
! GAAGCAGAAAAAGCATGAAG+TGG - chr2_3:14489769-14489788 None:intergenic 40.0%
AATCATTATCCTTCAGCTGG+GGG - chr2_3:14490343-14490362 None:intergenic 40.0%
CAATCATTATCCTTCAGCTG+GGG - chr2_3:14490344-14490363 None:intergenic 40.0%
CTCAATCATTATCCTTCAGC+TGG - chr2_3:14490346-14490365 None:intergenic 40.0%
CAGCTGAAGGATAATGATTG+AGG + chr2_3:14490344-14490363 Msa0280140:exon 40.0%
CATAGAGCAAGGTGGAATAA+TGG - chr2_3:14490395-14490414 None:intergenic 40.0%
CAACAATACATAGAGCAAGG+TGG - chr2_3:14490403-14490422 None:intergenic 40.0%
AATAGATTGGCGACTCTTGC+TGG + chr2_3:14488219-14488238 Msa0280140:intron 45.0%
!! ACTCTTGCTGGTTTGGTTTC+AGG + chr2_3:14488231-14488250 Msa0280140:intron 45.0%
!! GCTGGTTTGGTTTCAGGTTA+AGG + chr2_3:14488237-14488256 Msa0280140:intron 45.0%
CTTAGGCATGTAGAAGAAGC+AGG + chr2_3:14488355-14488374 Msa0280140:CDS 45.0%
ACAAATTCCTCTTTCACGCC+AGG - chr2_3:14488388-14488407 None:intergenic 45.0%
ATATTCAGGCTGAGCTTGCA+TGG + chr2_3:14488458-14488477 Msa0280140:CDS 45.0%
TATTCAGGCTGAGCTTGCAT+GGG + chr2_3:14488459-14488478 Msa0280140:CDS 45.0%
AGCAGAAGATGCTGTTGTCA+AGG + chr2_3:14488501-14488520 Msa0280140:CDS 45.0%
GCAGAAGATGCTGTTGTCAA+GGG + chr2_3:14488502-14488521 Msa0280140:CDS 45.0%
AGATGCTGTTGTCAAGGGTA+AGG + chr2_3:14488507-14488526 Msa0280140:CDS 45.0%
TGCAAATAAAGGTGGTGTGG+TGG + chr2_3:14488750-14488769 Msa0280140:CDS 45.0%
GCTGAAGTTGAAGGCCTTAA+GGG + chr2_3:14488772-14488791 Msa0280140:CDS 45.0%
ACCGTTGACATCTGTGAGAA+TGG - chr2_3:14488805-14488824 None:intergenic 45.0%
!! GGTTCCTCTAAAGTTTGTGG+AGG + chr2_3:14489230-14489249 Msa0280140:CDS 45.0%
!! TCCTCTAAAGTTTGTGGAGG+TGG + chr2_3:14489233-14489252 Msa0280140:CDS 45.0%
TCCACCTCCACAAACTTTAG+AGG - chr2_3:14489237-14489256 None:intergenic 45.0%
GGAATTGGATCAGTTGTCAC+CGG + chr2_3:14489321-14489340 Msa0280140:CDS 45.0%
GTGCAAAGCCTAAAGCCATA+TGG + chr2_3:14489348-14489367 Msa0280140:CDS 45.0%
GTCGACATTGGTGGAATTAG+TGG + chr2_3:14489378-14489397 Msa0280140:CDS 45.0%
TCAACCTGGTGATACTCTGA+AGG + chr2_3:14489458-14489477 Msa0280140:CDS 45.0%
AAGAAGTTGGAACCTACACC+TGG + chr2_3:14489615-14489634 Msa0280140:CDS 45.0%
GGATTACGGATCATATCTCC+AGG - chr2_3:14489636-14489655 None:intergenic 45.0%
TCCAACGCTTGTATTCGAGA+AGG + chr2_3:14489653-14489672 Msa0280140:CDS 45.0%
ACCTTCTCGAATACAAGCGT+TGG - chr2_3:14489657-14489676 None:intergenic 45.0%
TTTCTTATAGGCGGAGGAGA+TGG + chr2_3:14489939-14489958 Msa0280140:intron 45.0%
AACAAGCAAATACCTCTGGC+TGG - chr2_3:14490029-14490048 None:intergenic 45.0%
ATGAAACTGAAGCAGCAGCA+AGG + chr2_3:14490079-14490098 Msa0280140:intron 45.0%
TGAAACTGAAGCAGCAGCAA+GGG + chr2_3:14490080-14490099 Msa0280140:intron 45.0%
TGCTGAGAGTTAATCCACTC+TGG - chr2_3:14490255-14490274 None:intergenic 45.0%
GGATTAACTCTCAGCAGTGA+CGG + chr2_3:14490259-14490278 Msa0280140:CDS 45.0%
GATTAACTCTCAGCAGTGAC+GGG + chr2_3:14490260-14490279 Msa0280140:CDS 45.0%
!!! TTTTAAATTTTAAACATTTA+CGG - chr2_3:14487592-14487611 None:intergenic 5.0%
ACGTTGTCGTACTGCTCCAA+TGG + chr2_3:14486923-14486942 Msa0280140:exon 50.0%
TGTCGTACTGCTCCAATGGA+AGG + chr2_3:14486927-14486946 Msa0280140:exon 50.0%
! ATTGGCGACTCTTGCTGGTT+TGG + chr2_3:14488224-14488243 Msa0280140:intron 50.0%
!! CAGGTTAAGGGCACTGTGTT+TGG + chr2_3:14488250-14488269 Msa0280140:intron 50.0%
!! GTGTTTGGCACCGATACTAG+TGG + chr2_3:14488265-14488284 Msa0280140:CDS 50.0%
AGGCGAGCCTCTACAAACTT+AGG + chr2_3:14488338-14488357 Msa0280140:CDS 50.0%
GAAGAAGCAGGCATAGTTCC+TGG + chr2_3:14488367-14488386 Msa0280140:CDS 50.0%
CATAGTTCCTGGCGTGAAAG+AGG + chr2_3:14488378-14488397 Msa0280140:CDS 50.0%
GGCTGAAGTTGAAGGCCTTA+AGG + chr2_3:14488771-14488790 Msa0280140:CDS 50.0%
AAAGTTTGTGGAGGTGGACC+AGG + chr2_3:14489239-14489258 Msa0280140:CDS 50.0%
!! GGATAAGTCTGGCTTGTTCC+TGG - chr2_3:14489260-14489279 None:intergenic 50.0%
TCCTAGTTGTCCTTGGATGC+CGG - chr2_3:14489304-14489323 None:intergenic 50.0%
CTTTAGGCTTTGCACAGTGC+CGG - chr2_3:14489343-14489362 None:intergenic 50.0%
!! CAAAGGCGCCATATGGCTTT+AGG - chr2_3:14489359-14489378 None:intergenic 50.0%
!! ATGTCGACAAAGGCGCCATA+TGG - chr2_3:14489366-14489385 None:intergenic 50.0%
TATGGCGCCTTTGTCGACAT+TGG + chr2_3:14489366-14489385 Msa0280140:CDS 50.0%
TTAAGTCATGACCGCGAGAG+AGG + chr2_3:14489573-14489592 Msa0280140:CDS 50.0%
CGGATCATATCTCCAGGTGT+AGG - chr2_3:14489630-14489649 None:intergenic 50.0%
AATAGCGCAAGCAGAAGCCA+TGG + chr2_3:14489981-14490000 Msa0280140:CDS 50.0%
AAGCATATCAGCACGAGCCA+TGG - chr2_3:14490001-14490020 None:intergenic 50.0%
! TGGCTCGTGCTGATATGCTT+AGG + chr2_3:14490001-14490020 Msa0280140:CDS 50.0%
TATGCTTAGGTTCCAGCCAG+AGG + chr2_3:14490014-14490033 Msa0280140:CDS 50.0%
AAGCAGCAGCAAGGGATCAA+AGG + chr2_3:14490088-14490107 Msa0280140:intron 50.0%
!! GTGAGAGCGCCTCATTCATG+TGG + chr2_3:14487783-14487802 Msa0280140:intron 55.0%
AGGCTGAGCTTGCATGGGAA+AGG + chr2_3:14488464-14488483 Msa0280140:CDS 55.0%
GGTGTGGTGGCTGAAGTTGA+AGG + chr2_3:14488763-14488782 Msa0280140:CDS 55.0%
GCGGTGGCTAAGGATAAGTC+TGG - chr2_3:14489271-14489290 None:intergenic 55.0%
! TTGTCCTTGGATGCCGGCTA+CGG - chr2_3:14489298-14489317 None:intergenic 55.0%
GACTTACACGACCTCTCTCG+CGG - chr2_3:14489587-14489606 None:intergenic 55.0%
! CTCAGCAGTGACGGGATCTT+AGG + chr2_3:14490268-14490287 Msa0280140:CDS 55.0%
GACGGGATCTTAGGACCACT+TGG + chr2_3:14490277-14490296 Msa0280140:CDS 55.0%
TCACTCAGATCCAGTCCCTC+TGG - chr2_3:14490316-14490335 None:intergenic 55.0%
AGTGAGATACCCCCAGCTGA+AGG + chr2_3:14490331-14490350 Msa0280140:CDS 55.0%
TCGTAGCGGCAAGTAAGCCG+TGG - chr2_3:14488317-14488336 None:intergenic 60.0%
GGCTTACTTGCCGCTACGAG+AGG + chr2_3:14488318-14488337 Msa0280140:CDS 60.0%
TAGAGGCTCGCCTCTCGTAG+CGG - chr2_3:14488331-14488350 None:intergenic 60.0%
CTACGGCTTTGCGGTGGCTA+AGG - chr2_3:14489281-14489300 None:intergenic 60.0%
AAAGCCGTAGCCGGCATCCA+AGG + chr2_3:14489291-14489310 Msa0280140:CDS 60.0%
GCCGGCATCCAAGGACAACT+AGG + chr2_3:14489300-14489319 Msa0280140:CDS 60.0%
GGCGCCTTTGTCGACATTGG+TGG + chr2_3:14489369-14489388 Msa0280140:CDS 60.0%
GGCGGCAAGTCTGAACCAAG+TGG - chr2_3:14490295-14490314 None:intergenic 60.0%
TGGTTCAGACTTGCCGCCAG+AGG + chr2_3:14490297-14490316 Msa0280140:CDS 60.0%
GGTTCAGACTTGCCGCCAGA+GGG + chr2_3:14490298-14490317 Msa0280140:CDS 60.0%
CTCAGATCCAGTCCCTCTGG+CGG - chr2_3:14490313-14490332 None:intergenic 60.0%
AGCCACCGCAAAGCCGTAGC+CGG + chr2_3:14489282-14489301 Msa0280140:CDS 65.0%
! GGATGCCGGCTACGGCTTTG+CGG - chr2_3:14489290-14489309 None:intergenic 65.0%
AGACTTGCCGCCAGAGGGAC+TGG + chr2_3:14490303-14490322 Msa0280140:CDS 65.0%
! TGCCGGCTACGGCTTTGCGG+TGG - chr2_3:14489287-14489306 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 14486843 14490670 14486843 ID=Msa0280140;Name=Msa0280140
chr2_3 mRNA 14486843 14490670 14486843 ID=Msa0280140-mRNA-1;Parent=Msa0280140;Name=Msa0280140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|7|313|339
chr2_3 exon 14486843 14487022 14486843 ID=Msa0280140-mRNA-1:exon:6118;Parent=Msa0280140-mRNA-1
chr2_3 exon 14488253 14488528 14488253 ID=Msa0280140-mRNA-1:exon:6119;Parent=Msa0280140-mRNA-1
chr2_3 exon 14488742 14488822 14488742 ID=Msa0280140-mRNA-1:exon:6120;Parent=Msa0280140-mRNA-1
chr2_3 exon 14489198 14489479 14489198 ID=Msa0280140-mRNA-1:exon:6121;Parent=Msa0280140-mRNA-1
chr2_3 exon 14489564 14489674 14489564 ID=Msa0280140-mRNA-1:exon:6122;Parent=Msa0280140-mRNA-1
chr2_3 exon 14489949 14490035 14489949 ID=Msa0280140-mRNA-1:exon:6123;Parent=Msa0280140-mRNA-1
chr2_3 exon 14490256 14490670 14490256 ID=Msa0280140-mRNA-1:exon:6124;Parent=Msa0280140-mRNA-1
chr2_3 five_prime_UTR 14486843 14486941 14486843 ID=Msa0280140-mRNA-1:five_prime_utr;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14486942 14487022 14486942 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14488253 14488528 14488253 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14488742 14488822 14488742 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14489198 14489479 14489198 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14489564 14489674 14489564 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14489949 14490035 14489949 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 CDS 14490256 14490357 14490256 ID=Msa0280140-mRNA-1:cds;Parent=Msa0280140-mRNA-1
chr2_3 three_prime_UTR 14490358 14490670 14490358 ID=Msa0280140-mRNA-1:three_prime_utr;Parent=Msa0280140-mRNA-1
Gene Sequence

>Msa0280140

ATGGAAGGTGTTTCGTTTACTCTTGACCAGTTTACAGAAGCTCTTGAAAAATATGATTTTGAGTCTGAAATTGGAACCAAGGTTAAGGGCACTGTGTTTGGCACCGATACTAGTGGAGCTTTTGTTGACATTACTTCAAAGTCCACGGCTTACTTGCCGCTACGAGAGGCGAGCCTCTACAAACTTAGGCATGTAGAAGAAGCAGGCATAGTTCCTGGCGTGAAAGAGGAATTTGTAATTGTTGGTCAAAATGAAATTGATGATGGTATGATCTTGAGTTTAAGAGATATTCAGGCTGAGCTTGCATGGGAAAGGTGTAGACAACTTCAAGCAGAAGATGCTGTTGTCAAGGGTAAGATTATTGATGCAAATAAAGGTGGTGTGGTGGCTGAAGTTGAAGGCCTTAAGGGATTTGTTCCATTCTCACAGATGTCAACGAAAACACCGGGAGAAGAGATTATTGAGTTTGAGGTTCCTCTAAAGTTTGTGGAGGTGGACCAGGAACAAGCCAGACTTATCCTTAGCCACCGCAAAGCCGTAGCCGGCATCCAAGGACAACTAGGAATTGGATCAGTTGTCACCGGCACTGTGCAAAGCCTAAAGCCATATGGCGCCTTTGTCGACATTGGTGGAATTAGTGGCCTTCTTCATGTCAGTCAAATTAGTCACGATCGTATATCAGATATTGCAACTGTTCTTCAACCTGGTGATACTCTGAAGGTGATGATCTTAAGTCATGACCGCGAGAGAGGTCGTGTAAGTCTTTCCACAAAGAAGTTGGAACCTACACCTGGAGATATGATCCGTAATCCAACGCTTGTATTCGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCGCAAGCAGAAGCCATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGACGGGATCTTAGGACCACTTGGTTCAGACTTGCCGCCAGAGGGACTGGATCTGAGTGAGATACCCCCAGCTGAAGGATAA

Protein sequence

>Msa0280140

MEGVSFTLDQFTEALEKYDFESEIGTKVKGTVFGTDTSGAFVDITSKSTAYLPLREASLYKLRHVEEAGIVPGVKEEFVIVGQNEIDDGMILSLRDIQAELAWERCRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKTPGEEIIEFEVPLKFVEVDQEQARLILSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAFVDIGGISGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPTLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSDLPPEGLDLSEIPPAEG*