AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068610 MtrunA17_Chr7g0250691 89.655 58 5 1 16 73 284 340 2.00e-32 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068610 AT1G02100.3 87.500 40 5 0 23 62 277 316 5.23e-22 86.7
Msa1068610 AT1G02100.1 87.500 40 5 0 23 62 277 316 5.23e-22 86.7

Find 50 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATACATTCTTTATATTT+TGG 0.134011 7_2:+63675018 Msa1068610:three_prime_UTR
CACAAAACCAATCATCTATT+TGG 0.258597 7_2:-63674783 None:intergenic
CATTTGCCAGTTCACTCTGC+TGG 0.290446 7_2:+63674698 Msa1068610:three_prime_UTR
TTGCCTCGACACACCATTCT+TGG 0.299720 7_2:-63672335 None:intergenic
GCCAAACAGCTAGCAGAAAA+AGG 0.322159 7_2:-63674866 None:intergenic
TGATAAATCATCATCCTATA+TGG 0.354837 7_2:+63674927 Msa1068610:three_prime_UTR
GGTTGCATACATCCTAAGTT+TGG 0.376545 7_2:-63672361 None:intergenic
GGCAAGTATCTTTGCTTTGT+GGG 0.378861 7_2:-63674845 None:intergenic
AGTGAACTGGCAAATGCAAT+TGG 0.385912 7_2:-63674691 None:intergenic
GTGTATTGTATTGTGAAGAT+AGG 0.407278 7_2:+63675090 Msa1068610:three_prime_UTR
ATTTGCCAGTTCACTCTGCT+GGG 0.410302 7_2:+63674699 Msa1068610:three_prime_UTR
ACTGTTTAGGATTGAACGTC+TGG 0.413688 7_2:+63673804 Msa1068610:intron
AATTTAGCCAAATAGATGAT+TGG 0.422298 7_2:+63674776 Msa1068610:three_prime_UTR
TCAATCGGTCGGTGTTGTGT+GGG 0.440234 7_2:-63674907 None:intergenic
TAGCATAACTATATATGCTA+TGG 0.453582 7_2:-63674657 None:intergenic
TAGGATGATGATTTATCAAT+CGG 0.462954 7_2:-63674922 None:intergenic
AGGCAAGTATCTTTGCTTTG+TGG 0.464889 7_2:-63674846 None:intergenic
TAACCCTACACAGGCCATAT+AGG 0.465137 7_2:-63674941 None:intergenic
GCAAATGTAGGTAATGGAGC+TGG 0.468884 7_2:+63672306 Msa1068610:CDS
AGAATGTATCTGCGTTGAAA+AGG 0.482143 7_2:-63675007 None:intergenic
GATGTTGTTGTCCGTTGAAA+AGG 0.487102 7_2:+63674722 Msa1068610:three_prime_UTR
ACATCCCCAGCAGAGTGAAC+TGG 0.489582 7_2:-63674704 None:intergenic
GTGAACTGGCAAATGCAATT+GGG 0.511390 7_2:-63674690 None:intergenic
GAAATGGCAAATGTAGGTAA+TGG 0.519299 7_2:+63672300 None:intergenic
TCATCCTATATGGCCTGTGT+AGG 0.547925 7_2:+63674937 Msa1068610:three_prime_UTR
TCGAGGCAAAGGCCAAACTT+AGG 0.548810 7_2:+63672349 Msa1068610:CDS
TGTTCATTCACACAAAAGAA+AGG 0.555864 7_2:-63675067 None:intergenic
AGCATAACTATATATGCTAT+GGG 0.555904 7_2:-63674656 None:intergenic
CAATCGGTCGGTGTTGTGTG+GGG 0.557233 7_2:-63674906 None:intergenic
CATCCTATATGGCCTGTGTA+GGG 0.558952 7_2:+63674938 Msa1068610:three_prime_UTR
GAGCTGGGCTTGACCAAGAA+TGG 0.561324 7_2:+63672322 Msa1068610:CDS
AGAATGGTGTGTCGAGGCAA+AGG 0.563892 7_2:+63672338 Msa1068610:CDS
CAAATGTAGGTAATGGAGCT+GGG 0.581269 7_2:+63672307 Msa1068610:CDS
AATCGGTCGGTGTTGTGTGG+GGG 0.585491 7_2:-63674905 None:intergenic
TGTGGGGAAATGGCAAATGT+AGG 0.588255 7_2:+63672294 None:intergenic
TGAAGAGTGGTACATGATGC+AGG 0.593224 7_2:+63673843 Msa1068610:CDS
TTTGCCAGTTCACTCTGCTG+GGG 0.594691 7_2:+63674700 Msa1068610:three_prime_UTR
ATCCTCGTTCTTCATGAGGA+AGG 0.602119 7_2:-63674624 None:intergenic
GCGTATCCTCGTTCTTCATG+AGG 0.620579 7_2:-63674628 None:intergenic
TTATGCAATCAATGATGCAA+TGG 0.620946 7_2:+63674149 Msa1068610:CDS
TGTTCGATGAATTTGAAGAG+TGG 0.629354 7_2:+63673830 Msa1068610:CDS
ATGATGATTTATCAATCGGT+CGG 0.633220 7_2:-63674918 None:intergenic
TGACCAAGAATGGTGTGTCG+AGG 0.655134 7_2:+63672332 Msa1068610:CDS
ATTTCAGGAGCACTACTGTG+TGG 0.662705 7_2:+63674125 Msa1068610:intron
ACATGGACATAACCCTACAC+AGG 0.673855 7_2:-63674950 None:intergenic
TGTGTAGGGTTATGTCCATG+TGG 0.690099 7_2:+63674952 Msa1068610:three_prime_UTR
GTTTGGCAAAGAAAACGTGG+TGG 0.709372 7_2:+63674882 Msa1068610:three_prime_UTR
GCTGTTTGGCAAAGAAAACG+TGG 0.712749 7_2:+63674879 Msa1068610:three_prime_UTR
TTCCTTCCTCATGAAGAACG+AGG 0.721346 7_2:+63674622 Msa1068610:exon
TGGGAAACAAACAATACACG+AGG 0.740342 7_2:-63674826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTAATTTATAATGAT+GGG - chr7_2:63673266-63673285 None:intergenic 10.0%
!!! TTTACTTTAATTTATAATGA+TGG - chr7_2:63673267-63673286 None:intergenic 10.0%
!! TTATAAATTAAAGTAAAATG+TGG + chr7_2:63673270-63673289 Msa1068610:intron 10.0%
!!! TTTTGTTTCTAATTTATATA+TGG + chr7_2:63673725-63673744 Msa1068610:intron 10.0%
!!! ATTTTAATCTTATTAGCAAT+TGG - chr7_2:63672702-63672721 None:intergenic 15.0%
!!! ATTATTTTTCGTATGTATAT+TGG + chr7_2:63672826-63672845 Msa1068610:intron 15.0%
!! AAATCATTTAACATTTACTT+TGG + chr7_2:63672891-63672910 Msa1068610:intron 15.0%
!!! TTTGGTATTTTACTATTATT+TGG + chr7_2:63672909-63672928 Msa1068610:intron 15.0%
!!! TCATTTTGAAACAATTTTAA+TGG + chr7_2:63673380-63673399 Msa1068610:intron 15.0%
!! AATATTGATCAAATTTCTTA+AGG + chr7_2:63673439-63673458 Msa1068610:intron 15.0%
!!! TAAAAGATAATGATTTGTAA+TGG - chr7_2:63673598-63673617 None:intergenic 15.0%
!! ATATTACTTACAAAAGAAAT+AGG - chr7_2:63673758-63673777 None:intergenic 15.0%
!! TAATATGAAGATAAACTAAT+TGG + chr7_2:63673772-63673791 Msa1068610:intron 15.0%
!! ATTTATGCAAATACAACAAT+GGG - chr7_2:63672606-63672625 None:intergenic 20.0%
!!! ACATTTTATGGATTTAAGTA+GGG + chr7_2:63672778-63672797 Msa1068610:intron 20.0%
!! AAAAGTAATTAATAGTGCAT+TGG + chr7_2:63673341-63673360 Msa1068610:intron 20.0%
!! AGTTTATATCTTCATGTTAA+AGG + chr7_2:63673669-63673688 Msa1068610:intron 20.0%
!! GTTTCTAATTTATATATGGT+TGG + chr7_2:63673729-63673748 Msa1068610:intron 20.0%
!!! AAACACTTTTCATAACAAAT+GGG - chr7_2:63673873-63673892 None:intergenic 20.0%
!! AATAATTACTTGCATTAAGT+TGG - chr7_2:63674003-63674022 None:intergenic 20.0%
!! ATTATCTATAACAAAGTATG+TGG - chr7_2:63674047-63674066 None:intergenic 20.0%
!!! ATCATATTATATTTTCGTGT+TGG - chr7_2:63674434-63674453 None:intergenic 20.0%
!! CGAAAATATAATATGATGTT+TGG + chr7_2:63674437-63674456 Msa1068610:intron 20.0%
!! AAATATAATATGATGTTTGG+TGG + chr7_2:63674440-63674459 Msa1068610:intron 20.0%
!! AATATAATATGATGTTTGGT+GGG + chr7_2:63674441-63674460 Msa1068610:intron 20.0%
!!! CAGATACATTCTTTATATTT+TGG + chr7_2:63675018-63675037 Msa1068610:three_prime_UTR 20.0%
! TTTATGCAAATACAACAATG+GGG - chr7_2:63672605-63672624 None:intergenic 25.0%
! GATTTATGCAAATACAACAA+TGG - chr7_2:63672607-63672626 None:intergenic 25.0%
! ATCTTATTAGCAATTGGATT+TGG - chr7_2:63672696-63672715 None:intergenic 25.0%
! TAAGATTAAAATCTTCCAAC+AGG + chr7_2:63672710-63672729 Msa1068610:intron 25.0%
!! GACATTTTATGGATTTAAGT+AGG + chr7_2:63672777-63672796 Msa1068610:intron 25.0%
!!! CTATTATTTGGTTGTTGTTT+TGG + chr7_2:63672921-63672940 Msa1068610:intron 25.0%
!!! AAAATAGCCTTGTTAACTAT+TGG + chr7_2:63673233-63673252 Msa1068610:intron 25.0%
! TAAAGTAAAATGTGGTACTT+TGG + chr7_2:63673278-63673297 Msa1068610:intron 25.0%
! AGTGTGCATAGTAATAATTA+AGG + chr7_2:63673305-63673324 Msa1068610:intron 25.0%
! GTGTGCATAGTAATAATTAA+GGG + chr7_2:63673306-63673325 Msa1068610:intron 25.0%
! TGTGCATAGTAATAATTAAG+GGG + chr7_2:63673307-63673326 Msa1068610:intron 25.0%
!!! TAATAATTAAGGGGTACTAT+TGG + chr7_2:63673316-63673335 Msa1068610:intron 25.0%
!!! AATAATTAAGGGGTACTATT+GGG + chr7_2:63673317-63673336 Msa1068610:intron 25.0%
! ATTGATCAAATTTCTTAAGG+TGG + chr7_2:63673442-63673461 Msa1068610:intron 25.0%
! TTGATCAAATTTCTTAAGGT+GGG + chr7_2:63673443-63673462 Msa1068610:intron 25.0%
! GTAATGGTTAAAATCTTGAT+GGG - chr7_2:63673582-63673601 None:intergenic 25.0%
! TGTAATGGTTAAAATCTTGA+TGG - chr7_2:63673583-63673602 None:intergenic 25.0%
! TGAAACTATTTAATTGCCAT+CGG + chr7_2:63673639-63673658 Msa1068610:intron 25.0%
!!! AAACAAAAAAGAGCATTTAG+GGG - chr7_2:63673713-63673732 None:intergenic 25.0%
!!! GAAACAAAAAAGAGCATTTA+GGG - chr7_2:63673714-63673733 None:intergenic 25.0%
!!! AGAAACAAAAAAGAGCATTT+AGG - chr7_2:63673715-63673734 None:intergenic 25.0%
!! CAAACACTTTTCATAACAAA+TGG - chr7_2:63673874-63673893 None:intergenic 25.0%
! AAAGTGTATAGAATTAGAAC+AGG - chr7_2:63673932-63673951 None:intergenic 25.0%
! ATAGAATATTCAGATACTAG+TGG - chr7_2:63674093-63674112 None:intergenic 25.0%
! TGATCTGTCATGTATTAAAT+TGG + chr7_2:63674180-63674199 Msa1068610:intron 25.0%
!! TTTCTGTATTTACTTTGAGA+CGG + chr7_2:63674209-63674228 Msa1068610:intron 25.0%
!! TTTTATGTAAGAGCTAGAAA+TGG - chr7_2:63674334-63674353 None:intergenic 25.0%
! ATGTATTATTGAAGTTTCAG+AGG + chr7_2:63674497-63674516 Msa1068610:intron 25.0%
! AGCATAACTATATATGCTAT+GGG - chr7_2:63674659-63674678 None:intergenic 25.0%
! TAGCATAACTATATATGCTA+TGG - chr7_2:63674660-63674679 None:intergenic 25.0%
! AATTTAGCCAAATAGATGAT+TGG + chr7_2:63674776-63674795 Msa1068610:three_prime_UTR 25.0%
! TAGGATGATGATTTATCAAT+CGG - chr7_2:63674925-63674944 None:intergenic 25.0%
! TGATAAATCATCATCCTATA+TGG + chr7_2:63674927-63674946 Msa1068610:three_prime_UTR 25.0%
!! TTTTTCATATATCTTCCACA+TGG - chr7_2:63674970-63674989 None:intergenic 25.0%
!!! AGTGTTTTTTGCTTGAAAAA+AGG + chr7_2:63675115-63675134 Msa1068610:three_prime_UTR 25.0%
!!! TAGTGTTTTTGTTTTCAATG+TGG + chr7_2:63675139-63675158 Msa1068610:three_prime_UTR 25.0%
!!! TTTTTGAGTTTGCAGGTTTT+GGG - chr7_2:63672403-63672422 None:intergenic 30.0%
!!! TTTTTTGAGTTTGCAGGTTT+TGG - chr7_2:63672404-63672423 None:intergenic 30.0%
!!! AACAACGGTGTTTTGTTTTT+CGG - chr7_2:63672529-63672548 None:intergenic 30.0%
TTATGCAAATACAACAATGG+GGG - chr7_2:63672604-63672623 None:intergenic 30.0%
AGTGCTTATACTACTAATAC+AGG + chr7_2:63672670-63672689 Msa1068610:intron 30.0%
ATTAAAATCTTCCAACAGGA+AGG + chr7_2:63672714-63672733 Msa1068610:intron 30.0%
ATCCATAAAATGTCAACATC+TGG - chr7_2:63672771-63672790 None:intergenic 30.0%
TTTATGGATTTAAGTAGGGA+AGG + chr7_2:63672782-63672801 Msa1068610:intron 30.0%
!!! GTTGTTTTGGTACTTTACAT+CGG + chr7_2:63672934-63672953 Msa1068610:intron 30.0%
CAGTAAAAACCTATATTCCA+CGG + chr7_2:63672989-63673008 Msa1068610:intron 30.0%
ATGTGTGTAACAACCTAAAA+CGG - chr7_2:63673168-63673187 None:intergenic 30.0%
AAATGCACCAATAGTTAACA+AGG - chr7_2:63673243-63673262 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr7_2:63673406-63673425 Msa1068610:intron 30.0%
TGGGAATTAAAAACTAGACA+AGG - chr7_2:63673563-63673582 None:intergenic 30.0%
GAAACTATTTAATTGCCATC+GGG + chr7_2:63673640-63673659 Msa1068610:intron 30.0%
ATATAAACTTTAGTACCCGA+TGG - chr7_2:63673658-63673677 None:intergenic 30.0%
!! AACAAAAAAGAGCATTTAGG+GGG - chr7_2:63673712-63673731 None:intergenic 30.0%
! TTGGTGATACTTTACTGTTT+AGG + chr7_2:63673791-63673810 Msa1068610:intron 30.0%
TCTAATTCTATACACTTTGC+TGG + chr7_2:63673934-63673953 Msa1068610:intron 30.0%
CTAATTCTATACACTTTGCT+GGG + chr7_2:63673935-63673954 Msa1068610:intron 30.0%
TAATTCTATACACTTTGCTG+GGG + chr7_2:63673936-63673955 Msa1068610:intron 30.0%
ACTAGTGGAATAAACAAAAG+AGG - chr7_2:63674078-63674097 None:intergenic 30.0%
TTATGCAATCAATGATGCAA+TGG + chr7_2:63674149-63674168 Msa1068610:CDS 30.0%
!! TTCTGTATTTACTTTGAGAC+GGG + chr7_2:63674210-63674229 Msa1068610:intron 30.0%
ATTCTTTCCTGGATTGAAAT+TGG + chr7_2:63674288-63674307 Msa1068610:intron 30.0%
! ATTTTCGTGTTGGAGTAAAT+AGG - chr7_2:63674424-63674443 None:intergenic 30.0%
!! ATTCTGAGAAACCTTTTCAA+CGG - chr7_2:63674736-63674755 None:intergenic 30.0%
CACAAAACCAATCATCTATT+TGG - chr7_2:63674786-63674805 None:intergenic 30.0%
ATGATGATTTATCAATCGGT+CGG - chr7_2:63674921-63674940 None:intergenic 30.0%
TGTTCATTCACACAAAAGAA+AGG - chr7_2:63675070-63675089 None:intergenic 30.0%
GTGTATTGTATTGTGAAGAT+AGG + chr7_2:63675090-63675109 Msa1068610:three_prime_UTR 30.0%
!!! GTACACTTTTTTGAGTTTGC+AGG - chr7_2:63672410-63672429 None:intergenic 35.0%
!!! CACAGACAGATTTTAGCTTT+TGG - chr7_2:63672435-63672454 None:intergenic 35.0%
AGTACAAGCTGATACAACAA+CGG - chr7_2:63672544-63672563 None:intergenic 35.0%
GAGCTTGTAGTGTGATAATT+AGG + chr7_2:63672644-63672663 Msa1068610:intron 35.0%
! CTCCAGATGTTGACATTTTA+TGG + chr7_2:63672766-63672785 Msa1068610:intron 35.0%
! AGGTTTTTACTGCTGATGAA+AGG - chr7_2:63672981-63673000 None:intergenic 35.0%
AATTGAAAGCCGTGGAATAT+AGG - chr7_2:63673001-63673020 None:intergenic 35.0%
TAACATCAAATTGAAAGCCG+TGG - chr7_2:63673009-63673028 None:intergenic 35.0%
CATAAATGTTAGCACGTAGT+AGG + chr7_2:63673055-63673074 Msa1068610:intron 35.0%
GGAATACAAATGGAATGATG+AGG + chr7_2:63673076-63673095 Msa1068610:intron 35.0%
ATACAAATGGAATGATGAGG+TGG + chr7_2:63673079-63673098 Msa1068610:intron 35.0%
TACAAATGGAATGATGAGGT+GGG + chr7_2:63673080-63673099 Msa1068610:intron 35.0%
!! AAACGGCACTCATTTTGAAA+CGG - chr7_2:63673151-63673170 None:intergenic 35.0%
!!! TTCAAAATGAGTGCCGTTTT+AGG + chr7_2:63673152-63673171 Msa1068610:intron 35.0%
AACTATTGTAGATGCTACTC+AGG - chr7_2:63673496-63673515 None:intergenic 35.0%
! CTTTCATGGCTTCTCTTTTA+GGG + chr7_2:63673534-63673553 Msa1068610:intron 35.0%
TGTTCGATGAATTTGAAGAG+TGG + chr7_2:63673830-63673849 Msa1068610:CDS 35.0%
ACAAAGTATGTGGTGATTGT+TGG - chr7_2:63674037-63674056 None:intergenic 35.0%
! TATCTGCGCGATTTAATTTC+AGG + chr7_2:63674110-63674129 Msa1068610:intron 35.0%
TGATCATGTGTATTCTTTCC+TGG + chr7_2:63674277-63674296 Msa1068610:intron 35.0%
TTGACTTCCAATTTCAATCC+AGG - chr7_2:63674298-63674317 None:intergenic 35.0%
ATGATGCCAAGCTATTAACT+TGG + chr7_2:63674359-63674378 Msa1068610:intron 35.0%
TCAAGTCCAAGTTAATAGCT+TGG - chr7_2:63674368-63674387 None:intergenic 35.0%
!! TGGACTTGATTGTGTTTTTG+AGG + chr7_2:63674379-63674398 Msa1068610:intron 35.0%
!! GGACTTGATTGTGTTTTTGA+GGG + chr7_2:63674380-63674399 Msa1068610:intron 35.0%
!! GACTTGATTGTGTTTTTGAG+GGG + chr7_2:63674381-63674400 Msa1068610:intron 35.0%
!! ACTTGATTGTGTTTTTGAGG+GGG + chr7_2:63674382-63674401 Msa1068610:intron 35.0%
! TAATATGATGTTTGGTGGGT+CGG + chr7_2:63674445-63674464 Msa1068610:intron 35.0%
!! TTTGTTTTCTTCCATGATGC+AGG + chr7_2:63674554-63674573 Msa1068610:intron 35.0%
! TTGTTTTCTTCCATGATGCA+GGG + chr7_2:63674555-63674574 Msa1068610:intron 35.0%
!!! TGATTGGTTTTGTGTGTGTA+TGG + chr7_2:63674792-63674811 Msa1068610:three_prime_UTR 35.0%
!! TTTTGTGTGTGTATGGACTA+TGG + chr7_2:63674799-63674818 Msa1068610:three_prime_UTR 35.0%
AGAATGTATCTGCGTTGAAA+AGG - chr7_2:63675010-63675029 None:intergenic 35.0%
! GAAAGGAAACAAAAAGTGCA+TGG - chr7_2:63675053-63675072 None:intergenic 35.0%
!! CAAATGTAGGTAATGGAGCT+GGG + chr7_2:63672307-63672326 Msa1068610:CDS 40.0%
GGTTGCATACATCCTAAGTT+TGG - chr7_2:63672364-63672383 None:intergenic 40.0%
! ACAATGGGGGTTGTGTTTTT+CGG - chr7_2:63672591-63672610 None:intergenic 40.0%
AAAATCTTCCAACAGGAAGG+AGG + chr7_2:63672717-63672736 Msa1068610:intron 40.0%
GCACGTAGTAGGAATACAAA+TGG + chr7_2:63673066-63673085 Msa1068610:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_2:63673410-63673429 Msa1068610:intron 40.0%
TCTCTTATGCTTGCCTTTCA+TGG + chr7_2:63673520-63673539 Msa1068610:intron 40.0%
CCTAAAAGAGAAGCCATGAA+AGG - chr7_2:63673536-63673555 None:intergenic 40.0%
! CCTTTCATGGCTTCTCTTTT+AGG + chr7_2:63673533-63673552 Msa1068610:intron 40.0%
! ACTGTTTAGGATTGAACGTC+TGG + chr7_2:63673804-63673823 Msa1068610:intron 40.0%
!! CTTGATTGTGTTTTTGAGGG+GGG + chr7_2:63674383-63674402 Msa1068610:intron 40.0%
!! TTGATTGTGTTTTTGAGGGG+GGG + chr7_2:63674384-63674403 Msa1068610:intron 40.0%
GTGAACTGGCAAATGCAATT+GGG - chr7_2:63674693-63674712 None:intergenic 40.0%
AGTGAACTGGCAAATGCAAT+TGG - chr7_2:63674694-63674713 None:intergenic 40.0%
GATGTTGTTGTCCGTTGAAA+AGG + chr7_2:63674722-63674741 Msa1068610:three_prime_UTR 40.0%
TGGGAAACAAACAATACACG+AGG - chr7_2:63674829-63674848 None:intergenic 40.0%
GGCAAGTATCTTTGCTTTGT+GGG - chr7_2:63674848-63674867 None:intergenic 40.0%
AGGCAAGTATCTTTGCTTTG+TGG - chr7_2:63674849-63674868 None:intergenic 40.0%
!! GCAAATGTAGGTAATGGAGC+TGG + chr7_2:63672306-63672325 Msa1068610:CDS 45.0%
!!! TTGAGTTTGCAGGTTTTGGG+AGG - chr7_2:63672400-63672419 None:intergenic 45.0%
GTAACAACTCACAAGATCGC+TGG + chr7_2:63672461-63672480 Msa1068610:intron 45.0%
GCATAGACAGCAATGAACTG+AGG - chr7_2:63672507-63672526 None:intergenic 45.0%
GCATAGACAGCAATGAATGG+TGG - chr7_2:63672569-63672588 None:intergenic 45.0%
TCGGCATAGACAGCAATGAA+TGG - chr7_2:63672510-63672529 None:intergenic 45.0%
ACTACTTTCCTCCTTCCTGT+TGG - chr7_2:63672728-63672747 None:intergenic 45.0%
AGGAAGGAGGAAAGTAGTGA+TGG + chr7_2:63672730-63672749 Msa1068610:intron 45.0%
!!! GGCACTCATTTTGAAACGGA+GGG - chr7_2:63673147-63673166 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_2:63673409-63673428 Msa1068610:intron 45.0%
! TCTTAAGGTGGGAAGTGTGA+CGG + chr7_2:63673454-63673473 Msa1068610:intron 45.0%
GAGCATTTAGGGGGATATCA+GGG - chr7_2:63673703-63673722 None:intergenic 45.0%
! AGAGCATTTAGGGGGATATC+AGG - chr7_2:63673704-63673723 None:intergenic 45.0%
TGAAGAGTGGTACATGATGC+AGG + chr7_2:63673843-63673862 Msa1068610:CDS 45.0%
!! ATTTCAGGAGCACTACTGTG+TGG + chr7_2:63674125-63674144 Msa1068610:intron 45.0%
! TCCATGATGCAGGGTCTTTT+TGG + chr7_2:63674564-63674583 Msa1068610:intron 45.0%
! CCATGATGCAGGGTCTTTTT+GGG + chr7_2:63674565-63674584 Msa1068610:intron 45.0%
! CATGATGCAGGGTCTTTTTG+GGG + chr7_2:63674566-63674585 Msa1068610:intron 45.0%
!! CAGGGTCTTTTTGGGGATTT+TGG + chr7_2:63674573-63674592 Msa1068610:intron 45.0%
TTCCTTCCTCATGAAGAACG+AGG + chr7_2:63674622-63674641 Msa1068610:exon 45.0%
ATCCTCGTTCTTCATGAGGA+AGG - chr7_2:63674627-63674646 None:intergenic 45.0%
ATTTGCCAGTTCACTCTGCT+GGG + chr7_2:63674699-63674718 Msa1068610:three_prime_UTR 45.0%
! GCCTTTTTCTGCTAGCTGTT+TGG + chr7_2:63674865-63674884 Msa1068610:three_prime_UTR 45.0%
GCCAAACAGCTAGCAGAAAA+AGG - chr7_2:63674869-63674888 None:intergenic 45.0%
GCTGTTTGGCAAAGAAAACG+TGG + chr7_2:63674879-63674898 Msa1068610:three_prime_UTR 45.0%
GTTTGGCAAAGAAAACGTGG+TGG + chr7_2:63674882-63674901 Msa1068610:three_prime_UTR 45.0%
TCATCCTATATGGCCTGTGT+AGG + chr7_2:63674937-63674956 Msa1068610:three_prime_UTR 45.0%
CATCCTATATGGCCTGTGTA+GGG + chr7_2:63674938-63674957 Msa1068610:three_prime_UTR 45.0%
TAACCCTACACAGGCCATAT+AGG - chr7_2:63674944-63674963 None:intergenic 45.0%
ACATGGACATAACCCTACAC+AGG - chr7_2:63674953-63674972 None:intergenic 45.0%
TGTGTAGGGTTATGTCCATG+TGG + chr7_2:63674952-63674971 Msa1068610:three_prime_UTR 45.0%
TGACCAAGAATGGTGTGTCG+AGG + chr7_2:63672332-63672351 Msa1068610:CDS 50.0%
TTGCCTCGACACACCATTCT+TGG - chr7_2:63672338-63672357 None:intergenic 50.0%
AGAATGGTGTGTCGAGGCAA+AGG + chr7_2:63672338-63672357 Msa1068610:CDS 50.0%
TCGAGGCAAAGGCCAAACTT+AGG + chr7_2:63672349-63672368 Msa1068610:CDS 50.0%
ATGGAATGATGAGGTGGGAG+CGG + chr7_2:63673085-63673104 Msa1068610:intron 50.0%
!!! CGGCACTCATTTTGAAACGG+AGG - chr7_2:63673148-63673167 None:intergenic 50.0%
TACTCAGGCAGAGCTAATGG+GGG - chr7_2:63673481-63673500 None:intergenic 50.0%
CTACTCAGGCAGAGCTAATG+GGG - chr7_2:63673482-63673501 None:intergenic 50.0%
GCTACTCAGGCAGAGCTAAT+GGG - chr7_2:63673483-63673502 None:intergenic 50.0%
TGCTACTCAGGCAGAGCTAA+TGG - chr7_2:63673484-63673503 None:intergenic 50.0%
! ACACTTTGCTGGGGCTTTGA+TGG + chr7_2:63673945-63673964 Msa1068610:intron 50.0%
! CACTTTGCTGGGGCTTTGAT+GGG + chr7_2:63673946-63673965 Msa1068610:intron 50.0%
!! ATTGTGTTTTTGAGGGGGGG+AGG + chr7_2:63674387-63674406 Msa1068610:intron 50.0%
CCCAAAAAGACCCTGCATCA+TGG - chr7_2:63674568-63674587 None:intergenic 50.0%
GCGTATCCTCGTTCTTCATG+AGG - chr7_2:63674631-63674650 None:intergenic 50.0%
CATTTGCCAGTTCACTCTGC+TGG + chr7_2:63674698-63674717 Msa1068610:three_prime_UTR 50.0%
TTTGCCAGTTCACTCTGCTG+GGG + chr7_2:63674700-63674719 Msa1068610:three_prime_UTR 50.0%
!! TCAATCGGTCGGTGTTGTGT+GGG - chr7_2:63674910-63674929 None:intergenic 50.0%
!! ATCAATCGGTCGGTGTTGTG+TGG - chr7_2:63674911-63674930 None:intergenic 50.0%
GAGCTGGGCTTGACCAAGAA+TGG + chr7_2:63672322-63672341 Msa1068610:CDS 55.0%
!!! TTGCAGGTTTTGGGAGGCCA+GGG - chr7_2:63672394-63672413 None:intergenic 55.0%
!!! TTTGCAGGTTTTGGGAGGCC+AGG - chr7_2:63672395-63672414 None:intergenic 55.0%
! TTTGCTGGGGCTTTGATGGG+TGG + chr7_2:63673949-63673968 Msa1068610:intron 55.0%
GTGGTCCTGATCCTAGAGCA+GGG + chr7_2:63673968-63673987 Msa1068610:intron 55.0%
!! GTCAACCCTGCTCTAGGATC+AGG - chr7_2:63673976-63673995 None:intergenic 55.0%
GGTCATGTCAACCCTGCTCT+AGG - chr7_2:63673982-63674001 None:intergenic 55.0%
ACATCCCCAGCAGAGTGAAC+TGG - chr7_2:63674707-63674726 None:intergenic 55.0%
!! AATCGGTCGGTGTTGTGTGG+GGG - chr7_2:63674908-63674927 None:intergenic 55.0%
!! CAATCGGTCGGTGTTGTGTG+GGG - chr7_2:63674909-63674928 None:intergenic 55.0%
GTATGCAACCAGCATGCCCC+TGG + chr7_2:63672374-63672393 Msa1068610:intron 60.0%
!!! TGCAGGTTTTGGGAGGCCAG+GGG - chr7_2:63672393-63672412 None:intergenic 60.0%
GGTGGTCCTGATCCTAGAGC+AGG + chr7_2:63673967-63673986 Msa1068610:intron 60.0%
! TTGGGAGGCCAGGGGCATGC+TGG - chr7_2:63672385-63672404 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 63672303 63675162 63672303 ID=Msa1068610;Name=Msa1068610
chr7_2 mRNA 63672303 63675162 63672303 ID=Msa1068610-mRNA-1;Parent=Msa1068610;Name=Msa1068610-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.66|0.5|0.75|1|0.75|4|527|73
chr7_2 exon 63672303 63672373 63672303 ID=Msa1068610-mRNA-1:exon:13183;Parent=Msa1068610-mRNA-1
chr7_2 exon 63673813 63673864 63673813 ID=Msa1068610-mRNA-1:exon:13184;Parent=Msa1068610-mRNA-1
chr7_2 exon 63674132 63674170 63674132 ID=Msa1068610-mRNA-1:exon:13185;Parent=Msa1068610-mRNA-1
chr7_2 exon 63674576 63675162 63674576 ID=Msa1068610-mRNA-1:exon:13186;Parent=Msa1068610-mRNA-1
chr7_2 CDS 63672303 63672373 63672303 ID=Msa1068610-mRNA-1:cds;Parent=Msa1068610-mRNA-1
chr7_2 CDS 63673813 63673864 63673813 ID=Msa1068610-mRNA-1:cds;Parent=Msa1068610-mRNA-1
chr7_2 CDS 63674132 63674170 63674132 ID=Msa1068610-mRNA-1:cds;Parent=Msa1068610-mRNA-1
chr7_2 CDS 63674576 63674635 63674576 ID=Msa1068610-mRNA-1:cds;Parent=Msa1068610-mRNA-1
chr7_2 three_prime_UTR 63674636 63675162 63674636 ID=Msa1068610-mRNA-1:three_prime_utr;Parent=Msa1068610-mRNA-1
Gene Sequence

>Msa1068610

ATGGCAAATGTAGGTAATGGAGCTGGGCTTGACCAAGAATGGTGTGTCGAGGCAAAGGCCAAACTTAGGATGATTGAACGTCTGGAATTGTTCGATGAATTTGAAGAGTGGTACATGATGCAGGAGCACTACTGTGTGGCTTATGCAATCAATGATGCAATGGGTCTTTTTGGGGATTTTGGTTTTCTTAATAACAACAACAGTGTGCTTCCTTCCTCATGA
Protein sequence

>Msa1068610

MANVGNGAGLDQEWCVEAKAKLRMIERLELFDEFEEWYMMQEHYCVAYAINDAMGLFGDFGFLNNNNSVLPSS*