AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790850 MtrunA17_Chr7g0266561 100.000 80 0 0 1 80 1 80 1.03e-53 161
Msa0790850 MtrunA17_Chr6g0477821 100.000 76 0 0 1 76 1 76 1.51e-50 153
Msa0790850 MtrunA17_Chr7g0240391 38.028 71 35 1 9 70 10 80 7.24e-13 58.5
Msa0790850 MtrunA17_Chr8g0351841 35.211 71 37 1 9 70 10 80 3.16e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790850 AT2G23930.1 91.139 79 7 0 1 79 1 79 2.89e-49 150
Msa0790850 AT3G11500.2 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa0790850 AT3G11500.1 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa0790850 AT2G23930.2 88.679 53 6 0 27 79 1 53 1.70e-28 97.1
Msa0790850 AT2G03870.2 38.028 71 35 1 9 70 10 80 1.65e-12 57.8
Msa0790850 AT2G03870.1 38.028 71 35 1 9 70 10 80 1.65e-12 57.8

Find 41 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGACCAATTTATGAATT+TGG 0.200064 5_3:-1673637 Msa0790850:CDS
CTAACTAATTCTCAGAAGTT+AGG 0.225810 5_3:-1674758 None:intergenic
TGTGAGTGCTGGATGCATTT+AGG 0.243938 5_3:-1673246 Msa0790850:three_prime_UTR
GTGAGTGCTGGATGCATTTA+GGG 0.270068 5_3:-1673245 Msa0790850:three_prime_UTR
CAACAACCAAATTCATAAAT+TGG 0.293346 5_3:+1673631 None:intergenic
TCGAAAATTGCAGCTGTTGA+TGG 0.308847 5_3:-1673108 Msa0790850:three_prime_UTR
AATGCTTACTTCTTCAAATC+TGG 0.328903 5_3:+1674645 None:intergenic
TTCTCAGAAGTTAGGGTTTG+TGG 0.351451 5_3:-1674750 None:intergenic
AACGGAGAACGAAGATGATT+TGG 0.363843 5_3:+1674701 None:intergenic
TCTGGTTGGTTTGTGAGTGC+TGG 0.367081 5_3:-1673257 Msa0790850:three_prime_UTR
TGCAATTGTGGATTGTAATA+TGG 0.384204 5_3:-1673309 Msa0790850:three_prime_UTR
TAACTAATTCTCAGAAGTTA+GGG 0.411179 5_3:-1674757 None:intergenic
TCTTTCACCATGAGTAGGTC+AGG 0.413563 5_3:-1674675 Msa0790850:exon
AATTAGATGCTTCTGTTCAC+TGG 0.418853 5_3:+1673404 None:intergenic
ACATTTATAACTAAATTTCA+AGG 0.440241 5_3:-1673367 Msa0790850:three_prime_UTR
AGGGTTGTAGTGGATGGTAA+TGG 0.465552 5_3:-1673226 Msa0790850:three_prime_UTR
AAATGTGATTTCAACTAAAG+AGG 0.496559 5_3:+1673176 None:intergenic
GCATTTAGGGTTGTAGTGGA+TGG 0.497190 5_3:-1673232 Msa0790850:three_prime_UTR
ACAGAAACCGCTTAGATGCT+AGG 0.499392 5_3:-1673339 Msa0790850:three_prime_UTR
AATGCAAATCGCATGATTGT+TGG 0.502115 5_3:-1673672 Msa0790850:CDS
TCATAAATTGGTCGAAGCCA+CGG 0.529169 5_3:+1673643 None:intergenic
GGAGAACGAAGATGATTTGG+AGG 0.530047 5_3:+1674704 None:intergenic
CGCTTTCTGCAGGTGATCAG+AGG 0.541314 5_3:-1673458 Msa0790850:intron
AACGAAGATGATTTGGAGGG+TGG 0.546349 5_3:+1674708 None:intergenic
GGATGCATTTAGGGTTGTAG+TGG 0.555307 5_3:-1673236 Msa0790850:three_prime_UTR
TTTGTTCTTTCACCATGAGT+AGG 0.559149 5_3:-1674680 Msa0790850:exon
GACAATACTGTGGAGGTGAA+TGG 0.565835 5_3:-1673609 Msa0790850:CDS
TGGCTGCCCTGACCTACTCA+TGG 0.567702 5_3:+1674668 None:intergenic
ACTCATGGTGAAAGAACAAA+CGG 0.572630 5_3:+1674683 None:intergenic
AAATAGTGTGGTCACTGTAG+AGG 0.581425 5_3:-1673435 Msa0790850:CDS
CTAGGAGTAGAATGCAATTG+TGG 0.586469 5_3:-1673321 Msa0790850:three_prime_UTR
CTTTCACCATGAGTAGGTCA+GGG 0.590203 5_3:-1674674 Msa0790850:exon
GCTTACTTCTTCAAATCTGG+TGG 0.598528 5_3:+1674648 None:intergenic
ATGATTGTTGGTACTCTCCG+TGG 0.628986 5_3:-1673660 Msa0790850:CDS
TCATCTTAGCGAGAAATCTG+AGG 0.629688 5_3:-1673286 Msa0790850:three_prime_UTR
TTCTACTCCTAGCATCTAAG+CGG 0.649009 5_3:+1673332 None:intergenic
CATCTTAGCGAGAAATCTGA+GGG 0.651111 5_3:-1673285 Msa0790850:three_prime_UTR
TTTGGTTGTTGACAATACTG+TGG 0.664176 5_3:-1673619 Msa0790850:CDS
GAGAACGAAGATGATTTGGA+GGG 0.675668 5_3:+1674705 None:intergenic
GGTTGTTGACAATACTGTGG+AGG 0.683546 5_3:-1673616 Msa0790850:CDS
GGTGATCAGAGGAAATAGTG+TGG 0.728293 5_3:-1673447 Msa0790850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr5_3:1673425-1673444 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr5_3:1673493-1673512 Msa0790850:intron 10.0%
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr5_3:1673425-1673444 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr5_3:1673493-1673512 Msa0790850:intron 10.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr5_3:1673420-1673439 Msa0790850:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr5_3:1673919-1673938 Msa0790850:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr5_3:1674427-1674446 Msa0790850:intron 15.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr5_3:1673420-1673439 Msa0790850:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr5_3:1673919-1673938 Msa0790850:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr5_3:1674427-1674446 Msa0790850:intron 15.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr5_3:1673249-1673268 Msa0790850:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr5_3:1673778-1673797 Msa0790850:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr5_3:1673866-1673885 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr5_3:1673866-1673885 Msa0790850:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr5_3:1673867-1673886 Msa0790850:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr5_3:1673920-1673939 Msa0790850:intron 20.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr5_3:1673249-1673268 Msa0790850:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr5_3:1673778-1673797 Msa0790850:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr5_3:1673866-1673885 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr5_3:1673866-1673885 Msa0790850:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr5_3:1673867-1673886 Msa0790850:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr5_3:1673920-1673939 Msa0790850:intron 20.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr5_3:1673256-1673275 Msa0790850:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr5_3:1673636-1673655 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr5_3:1673868-1673887 Msa0790850:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr5_3:1673991-1674010 Msa0790850:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr5_3:1674018-1674037 Msa0790850:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr5_3:1674166-1674185 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr5_3:1674621-1674640 None:intergenic 25.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr5_3:1673256-1673275 Msa0790850:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr5_3:1673636-1673655 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr5_3:1673868-1673887 Msa0790850:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr5_3:1673991-1674010 Msa0790850:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr5_3:1674018-1674037 Msa0790850:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr5_3:1674166-1674185 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr5_3:1674621-1674640 None:intergenic 25.0%
AATGCTTACTTCTTCAAATC+TGG + chr5_3:1673152-1673171 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr5_3:1673216-1673235 Msa0790850:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr5_3:1673445-1673464 Msa0790850:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr5_3:1673630-1673649 Msa0790850:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr5_3:1673761-1673780 Msa0790850:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr5_3:1673869-1673888 Msa0790850:intron 30.0%
CATGTACATAGATACATATC+AGG + chr5_3:1673990-1674009 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr5_3:1673990-1674009 Msa0790850:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr5_3:1674011-1674030 Msa0790850:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr5_3:1674078-1674097 Msa0790850:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr5_3:1674157-1674176 Msa0790850:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr5_3:1674207-1674226 Msa0790850:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr5_3:1674245-1674264 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr5_3:1674485-1674504 Msa0790850:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr5_3:1674733-1674752 Msa0790850:five_prime_UTR 30.0%
AATGCTTACTTCTTCAAATC+TGG + chr5_3:1673152-1673171 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr5_3:1673216-1673235 Msa0790850:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr5_3:1673445-1673464 Msa0790850:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr5_3:1673630-1673649 Msa0790850:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr5_3:1673761-1673780 Msa0790850:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr5_3:1673869-1673888 Msa0790850:intron 30.0%
CATGTACATAGATACATATC+AGG + chr5_3:1673990-1674009 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr5_3:1673990-1674009 Msa0790850:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr5_3:1674011-1674030 Msa0790850:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr5_3:1674078-1674097 Msa0790850:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr5_3:1674157-1674176 Msa0790850:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr5_3:1674207-1674226 Msa0790850:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr5_3:1674245-1674264 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr5_3:1674485-1674504 Msa0790850:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr5_3:1674733-1674752 Msa0790850:five_prime_UTR 30.0%
ACTCATGGTGAAAGAACAAA+CGG + chr5_3:1673114-1673133 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr5_3:1673114-1673133 Msa0790850:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr5_3:1673543-1673562 Msa0790850:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr5_3:1673544-1673563 Msa0790850:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr5_3:1673800-1673819 Msa0790850:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr5_3:1674058-1674077 Msa0790850:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr5_3:1674122-1674141 Msa0790850:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr5_3:1674175-1674194 Msa0790850:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr5_3:1674206-1674225 Msa0790850:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr5_3:1674211-1674230 Msa0790850:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr5_3:1674393-1674412 None:intergenic 35.0%
ACTCATGGTGAAAGAACAAA+CGG + chr5_3:1673114-1673133 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr5_3:1673114-1673133 Msa0790850:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr5_3:1673543-1673562 Msa0790850:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr5_3:1673544-1673563 Msa0790850:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr5_3:1673800-1673819 Msa0790850:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr5_3:1674058-1674077 Msa0790850:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr5_3:1674122-1674141 Msa0790850:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr5_3:1674175-1674194 Msa0790850:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr5_3:1674206-1674225 Msa0790850:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr5_3:1674211-1674230 Msa0790850:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr5_3:1674393-1674412 None:intergenic 35.0%
! GAGAACGAAGATGATTTGGA+GGG + chr5_3:1673092-1673111 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr5_3:1673096-1673115 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr5_3:1673149-1673168 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr5_3:1673277-1673296 Msa0790850:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr5_3:1673520-1673539 Msa0790850:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr5_3:1673528-1673547 Msa0790850:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr5_3:1673671-1673690 Msa0790850:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr5_3:1673708-1673727 Msa0790850:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr5_3:1673878-1673897 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr5_3:1673976-1673995 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr5_3:1674154-1674173 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr5_3:1674214-1674233 Msa0790850:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr5_3:1674290-1674309 Msa0790850:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr5_3:1674326-1674345 Msa0790850:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr5_3:1674359-1674378 Msa0790850:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr5_3:1674465-1674484 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr5_3:1674473-1674492 Msa0790850:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr5_3:1674508-1674527 Msa0790850:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr5_3:1674509-1674528 Msa0790850:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr5_3:1674519-1674538 Msa0790850:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr5_3:1674686-1674705 Msa0790850:exon 40.0%
! GAGAACGAAGATGATTTGGA+GGG + chr5_3:1673092-1673111 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr5_3:1673096-1673115 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr5_3:1673149-1673168 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr5_3:1673277-1673296 Msa0790850:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr5_3:1673520-1673539 Msa0790850:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr5_3:1673528-1673547 Msa0790850:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr5_3:1673671-1673690 Msa0790850:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr5_3:1673708-1673727 Msa0790850:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr5_3:1673878-1673897 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr5_3:1673976-1673995 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr5_3:1674154-1674173 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr5_3:1674214-1674233 Msa0790850:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr5_3:1674290-1674309 Msa0790850:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr5_3:1674326-1674345 Msa0790850:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr5_3:1674359-1674378 Msa0790850:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr5_3:1674465-1674484 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr5_3:1674473-1674492 Msa0790850:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr5_3:1674508-1674527 Msa0790850:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr5_3:1674509-1674528 Msa0790850:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr5_3:1674519-1674538 Msa0790850:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr5_3:1674686-1674705 Msa0790850:exon 40.0%
! AACGAAGATGATTTGGAGGG+TGG + chr5_3:1673089-1673108 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr5_3:1673093-1673112 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr5_3:1673119-1673138 Msa0790850:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr5_3:1673120-1673139 Msa0790850:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr5_3:1673688-1673707 Msa0790850:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr5_3:1674134-1674153 Msa0790850:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr5_3:1674178-1674197 Msa0790850:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr5_3:1674185-1674204 Msa0790850:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr5_3:1674347-1674366 Msa0790850:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr5_3:1674455-1674474 Msa0790850:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr5_3:1674523-1674542 Msa0790850:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr5_3:1674548-1674567 Msa0790850:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr5_3:1674549-1674568 Msa0790850:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr5_3:1674558-1674577 Msa0790850:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr5_3:1674562-1674581 Msa0790850:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr5_3:1674568-1674587 Msa0790850:intron 45.0%
! AACGAAGATGATTTGGAGGG+TGG + chr5_3:1673089-1673108 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr5_3:1673093-1673112 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr5_3:1673119-1673138 Msa0790850:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr5_3:1673120-1673139 Msa0790850:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr5_3:1673688-1673707 Msa0790850:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr5_3:1674134-1674153 Msa0790850:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr5_3:1674178-1674197 Msa0790850:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr5_3:1674185-1674204 Msa0790850:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr5_3:1674347-1674366 Msa0790850:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr5_3:1674455-1674474 Msa0790850:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr5_3:1674523-1674542 Msa0790850:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr5_3:1674548-1674567 Msa0790850:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr5_3:1674549-1674568 Msa0790850:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr5_3:1674558-1674577 Msa0790850:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr5_3:1674562-1674581 Msa0790850:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr5_3:1674568-1674587 Msa0790850:intron 45.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr5_3:1673349-1673368 Msa0790850:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr5_3:1673398-1673417 None:intergenic 5.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr5_3:1673349-1673368 Msa0790850:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr5_3:1673398-1673417 None:intergenic 5.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr5_3:1673725-1673744 Msa0790850:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr5_3:1674537-1674556 Msa0790850:intron 50.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr5_3:1673725-1673744 Msa0790850:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr5_3:1674537-1674556 Msa0790850:intron 50.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr5_3:1674336-1674355 Msa0790850:intron 55.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr5_3:1674336-1674355 Msa0790850:intron 55.0%
TGGCTGCCCTGACCTACTCA+TGG + chr5_3:1673129-1673148 None:intergenic 60.0%
TGGCTGCCCTGACCTACTCA+TGG + chr5_3:1673129-1673148 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1673049 1674767 1673049 ID=Msa0790850;Name=Msa0790850
chr5_3 mRNA 1673049 1674767 1673049 ID=Msa0790850-mRNA-1;Parent=Msa0790850;Name=Msa0790850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|4|357|80
chr5_3 exon 1673049 1673468 1673049 ID=Msa0790850-mRNA-1:exon:612;Parent=Msa0790850-mRNA-1
chr5_3 exon 1673581 1673702 1673581 ID=Msa0790850-mRNA-1:exon:611;Parent=Msa0790850-mRNA-1
chr5_3 exon 1674523 1674545 1674523 ID=Msa0790850-mRNA-1:exon:610;Parent=Msa0790850-mRNA-1
chr5_3 exon 1674654 1674767 1674654 ID=Msa0790850-mRNA-1:exon:609;Parent=Msa0790850-mRNA-1
chr5_3 five_prime_UTR 1674689 1674767 1674689 ID=Msa0790850-mRNA-1:five_prime_utr;Parent=Msa0790850-mRNA-1
chr5_3 CDS 1674654 1674688 1674654 ID=Msa0790850-mRNA-1:cds;Parent=Msa0790850-mRNA-1
chr5_3 CDS 1674523 1674545 1674523 ID=Msa0790850-mRNA-1:cds;Parent=Msa0790850-mRNA-1
chr5_3 CDS 1673581 1673702 1673581 ID=Msa0790850-mRNA-1:cds;Parent=Msa0790850-mRNA-1
chr5_3 CDS 1673406 1673468 1673406 ID=Msa0790850-mRNA-1:cds;Parent=Msa0790850-mRNA-1
chr5_3 three_prime_UTR 1673049 1673405 1673049 ID=Msa0790850-mRNA-1:three_prime_utr;Parent=Msa0790850-mRNA-1
Gene Sequence

>Msa0790850

ATGAGTAGGTCAGGGCAGCCACCAGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTCGACCAATTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTGATCAGAGGAAATAGTGTGGTCACTGTAGAGGCGCTTGAACCAGTGAACAGAAGCATCTAA

Protein sequence

>Msa0790850

MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI*