AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1171360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171360 MtrunA17_Chr7g0266561 100.000 80 0 0 1 80 1 80 1.03e-53 161
Msa1171360 MtrunA17_Chr6g0477821 100.000 76 0 0 1 76 1 76 1.51e-50 153
Msa1171360 MtrunA17_Chr7g0240391 38.028 71 35 1 9 70 10 80 7.24e-13 58.5
Msa1171360 MtrunA17_Chr8g0351841 35.211 71 37 1 9 70 10 80 3.16e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171360 AT2G23930.1 91.139 79 7 0 1 79 1 79 2.89e-49 150
Msa1171360 AT3G11500.2 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1171360 AT3G11500.1 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa1171360 AT2G23930.2 88.679 53 6 0 27 79 1 53 1.70e-28 97.1
Msa1171360 AT2G03870.2 38.028 71 35 1 9 70 10 80 1.65e-12 57.8
Msa1171360 AT2G03870.1 38.028 71 35 1 9 70 10 80 1.65e-12 57.8

Find 41 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGACCAATTTATGAATT+TGG 0.200064 8_1:-982668 Msa1171360:CDS
CTAACTAATTCTCAGAAGTT+AGG 0.225810 8_1:-983788 None:intergenic
TGTGAGTGCTGGATGCATTT+AGG 0.243938 8_1:-982277 Msa1171360:three_prime_UTR
GTGAGTGCTGGATGCATTTA+GGG 0.270068 8_1:-982276 Msa1171360:three_prime_UTR
CAACAACCAAATTCATAAAT+TGG 0.293346 8_1:+982662 None:intergenic
TCGAAAATTGCAGCTGTTGA+TGG 0.308847 8_1:-982139 Msa1171360:three_prime_UTR
AATGCTTACTTCTTCAAATC+TGG 0.328903 8_1:+983675 None:intergenic
TTCTCAGAAGTTAGGGTTTG+TGG 0.351451 8_1:-983780 None:intergenic
AACGGAGAACGAAGATGATT+TGG 0.363843 8_1:+983731 None:intergenic
TCTGGTTGGTTTGTGAGTGC+TGG 0.367081 8_1:-982288 Msa1171360:three_prime_UTR
TGCAATTGTGGATTGTAATA+TGG 0.384204 8_1:-982340 Msa1171360:three_prime_UTR
TAACTAATTCTCAGAAGTTA+GGG 0.411179 8_1:-983787 None:intergenic
TCTTTCACCATGAGTAGGTC+AGG 0.413563 8_1:-983705 Msa1171360:exon
AATTAGATGCTTCTGTTCAC+TGG 0.418853 8_1:+982435 None:intergenic
ACATTTATAACTAAATTTCA+AGG 0.440241 8_1:-982398 Msa1171360:three_prime_UTR
AGGGTTGTAGTGGATGGTAA+TGG 0.465552 8_1:-982257 Msa1171360:three_prime_UTR
AAATGTGATTTCAACTAAAG+AGG 0.496559 8_1:+982207 None:intergenic
GCATTTAGGGTTGTAGTGGA+TGG 0.497190 8_1:-982263 Msa1171360:three_prime_UTR
ACAGAAACCGCTTAGATGCT+AGG 0.499392 8_1:-982370 Msa1171360:three_prime_UTR
AATGCAAATCGCATGATTGT+TGG 0.502115 8_1:-982703 Msa1171360:CDS
TCATAAATTGGTCGAAGCCA+CGG 0.529169 8_1:+982674 None:intergenic
GGAGAACGAAGATGATTTGG+AGG 0.530047 8_1:+983734 None:intergenic
CGCTTTCTGCAGGTGATCAG+AGG 0.541314 8_1:-982489 Msa1171360:intron
AACGAAGATGATTTGGAGGG+TGG 0.546349 8_1:+983738 None:intergenic
GGATGCATTTAGGGTTGTAG+TGG 0.555307 8_1:-982267 Msa1171360:three_prime_UTR
TTTGTTCTTTCACCATGAGT+AGG 0.559149 8_1:-983710 Msa1171360:exon
GACAATACTGTGGAGGTGAA+TGG 0.565835 8_1:-982640 Msa1171360:CDS
TGGCTGCCCTGACCTACTCA+TGG 0.567702 8_1:+983698 None:intergenic
ACTCATGGTGAAAGAACAAA+CGG 0.572630 8_1:+983713 None:intergenic
AAATAGTGTGGTCACTGTAG+AGG 0.581425 8_1:-982466 Msa1171360:CDS
CTAGGAGTAGAATGCAATTG+TGG 0.586469 8_1:-982352 Msa1171360:three_prime_UTR
CTTTCACCATGAGTAGGTCA+GGG 0.590203 8_1:-983704 Msa1171360:exon
GCTTACTTCTTCAAATCTGG+TGG 0.598528 8_1:+983678 None:intergenic
ATGATTGTTGGTACTCTCCG+TGG 0.628986 8_1:-982691 Msa1171360:CDS
TCATCTTAGCGAGAAATCTG+AGG 0.629688 8_1:-982317 Msa1171360:three_prime_UTR
TTCTACTCCTAGCATCTAAG+CGG 0.649009 8_1:+982363 None:intergenic
CATCTTAGCGAGAAATCTGA+GGG 0.651111 8_1:-982316 Msa1171360:three_prime_UTR
TTTGGTTGTTGACAATACTG+TGG 0.664176 8_1:-982650 Msa1171360:CDS
GAGAACGAAGATGATTTGGA+GGG 0.675668 8_1:+983735 None:intergenic
GGTTGTTGACAATACTGTGG+AGG 0.683546 8_1:-982647 Msa1171360:CDS
GGTGATCAGAGGAAATAGTG+TGG 0.728293 8_1:-982478 Msa1171360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr8_1:982455-982474 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr8_1:982523-982542 Msa1171360:intron 10.0%
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr8_1:982455-982474 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr8_1:982523-982542 Msa1171360:intron 10.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr8_1:982450-982469 Msa1171360:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr8_1:982949-982968 Msa1171360:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr8_1:983457-983476 Msa1171360:intron 15.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr8_1:982450-982469 Msa1171360:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr8_1:982949-982968 Msa1171360:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr8_1:983457-983476 Msa1171360:intron 15.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr8_1:982280-982299 Msa1171360:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr8_1:982808-982827 Msa1171360:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr8_1:982896-982915 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr8_1:982896-982915 Msa1171360:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr8_1:982897-982916 Msa1171360:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr8_1:982950-982969 Msa1171360:intron 20.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr8_1:982280-982299 Msa1171360:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr8_1:982808-982827 Msa1171360:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr8_1:982896-982915 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr8_1:982896-982915 Msa1171360:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr8_1:982897-982916 Msa1171360:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr8_1:982950-982969 Msa1171360:intron 20.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr8_1:982287-982306 Msa1171360:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr8_1:982666-982685 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr8_1:982898-982917 Msa1171360:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr8_1:983021-983040 Msa1171360:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr8_1:983048-983067 Msa1171360:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr8_1:983196-983215 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr8_1:983651-983670 None:intergenic 25.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr8_1:982287-982306 Msa1171360:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr8_1:982666-982685 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr8_1:982898-982917 Msa1171360:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr8_1:983021-983040 Msa1171360:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr8_1:983048-983067 Msa1171360:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr8_1:983196-983215 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr8_1:983651-983670 None:intergenic 25.0%
AATGCTTACTTCTTCAAATC+TGG + chr8_1:982183-982202 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr8_1:982247-982266 Msa1171360:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr8_1:982475-982494 Msa1171360:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr8_1:982660-982679 Msa1171360:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr8_1:982791-982810 Msa1171360:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr8_1:982899-982918 Msa1171360:intron 30.0%
CATGTACATAGATACATATC+AGG + chr8_1:983020-983039 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr8_1:983020-983039 Msa1171360:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr8_1:983041-983060 Msa1171360:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr8_1:983108-983127 Msa1171360:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr8_1:983187-983206 Msa1171360:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr8_1:983237-983256 Msa1171360:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr8_1:983275-983294 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr8_1:983515-983534 Msa1171360:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr8_1:983763-983782 Msa1171360:five_prime_UTR 30.0%
AATGCTTACTTCTTCAAATC+TGG + chr8_1:982183-982202 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr8_1:982247-982266 Msa1171360:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr8_1:982475-982494 Msa1171360:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr8_1:982660-982679 Msa1171360:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr8_1:982791-982810 Msa1171360:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr8_1:982899-982918 Msa1171360:intron 30.0%
CATGTACATAGATACATATC+AGG + chr8_1:983020-983039 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr8_1:983020-983039 Msa1171360:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr8_1:983041-983060 Msa1171360:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr8_1:983108-983127 Msa1171360:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr8_1:983187-983206 Msa1171360:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr8_1:983237-983256 Msa1171360:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr8_1:983275-983294 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr8_1:983515-983534 Msa1171360:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr8_1:983763-983782 Msa1171360:five_prime_UTR 30.0%
ACTCATGGTGAAAGAACAAA+CGG + chr8_1:982145-982164 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr8_1:982145-982164 Msa1171360:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr8_1:982573-982592 Msa1171360:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr8_1:982574-982593 Msa1171360:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr8_1:982830-982849 Msa1171360:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr8_1:983088-983107 Msa1171360:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr8_1:983152-983171 Msa1171360:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr8_1:983205-983224 Msa1171360:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr8_1:983236-983255 Msa1171360:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr8_1:983241-983260 Msa1171360:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr8_1:983423-983442 None:intergenic 35.0%
ACTCATGGTGAAAGAACAAA+CGG + chr8_1:982145-982164 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr8_1:982145-982164 Msa1171360:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr8_1:982573-982592 Msa1171360:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr8_1:982574-982593 Msa1171360:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr8_1:982830-982849 Msa1171360:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr8_1:983088-983107 Msa1171360:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr8_1:983152-983171 Msa1171360:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr8_1:983205-983224 Msa1171360:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr8_1:983236-983255 Msa1171360:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr8_1:983241-983260 Msa1171360:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr8_1:983423-983442 None:intergenic 35.0%
! GAGAACGAAGATGATTTGGA+GGG + chr8_1:982123-982142 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr8_1:982127-982146 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr8_1:982180-982199 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr8_1:982308-982327 Msa1171360:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr8_1:982550-982569 Msa1171360:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr8_1:982558-982577 Msa1171360:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr8_1:982701-982720 Msa1171360:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr8_1:982738-982757 Msa1171360:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr8_1:982908-982927 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr8_1:983006-983025 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr8_1:983184-983203 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr8_1:983244-983263 Msa1171360:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr8_1:983320-983339 Msa1171360:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr8_1:983356-983375 Msa1171360:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr8_1:983389-983408 Msa1171360:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr8_1:983495-983514 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr8_1:983503-983522 Msa1171360:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr8_1:983538-983557 Msa1171360:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr8_1:983539-983558 Msa1171360:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr8_1:983549-983568 Msa1171360:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr8_1:983716-983735 Msa1171360:exon 40.0%
! GAGAACGAAGATGATTTGGA+GGG + chr8_1:982123-982142 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr8_1:982127-982146 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr8_1:982180-982199 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr8_1:982308-982327 Msa1171360:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr8_1:982550-982569 Msa1171360:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr8_1:982558-982577 Msa1171360:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr8_1:982701-982720 Msa1171360:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr8_1:982738-982757 Msa1171360:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr8_1:982908-982927 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr8_1:983006-983025 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr8_1:983184-983203 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr8_1:983244-983263 Msa1171360:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr8_1:983320-983339 Msa1171360:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr8_1:983356-983375 Msa1171360:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr8_1:983389-983408 Msa1171360:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr8_1:983495-983514 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr8_1:983503-983522 Msa1171360:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr8_1:983538-983557 Msa1171360:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr8_1:983539-983558 Msa1171360:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr8_1:983549-983568 Msa1171360:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr8_1:983716-983735 Msa1171360:exon 40.0%
! AACGAAGATGATTTGGAGGG+TGG + chr8_1:982120-982139 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr8_1:982124-982143 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr8_1:982150-982169 Msa1171360:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr8_1:982151-982170 Msa1171360:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr8_1:982718-982737 Msa1171360:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr8_1:983164-983183 Msa1171360:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr8_1:983208-983227 Msa1171360:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr8_1:983215-983234 Msa1171360:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr8_1:983377-983396 Msa1171360:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr8_1:983485-983504 Msa1171360:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr8_1:983553-983572 Msa1171360:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr8_1:983578-983597 Msa1171360:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr8_1:983579-983598 Msa1171360:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr8_1:983588-983607 Msa1171360:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr8_1:983592-983611 Msa1171360:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr8_1:983598-983617 Msa1171360:intron 45.0%
! AACGAAGATGATTTGGAGGG+TGG + chr8_1:982120-982139 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr8_1:982124-982143 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr8_1:982150-982169 Msa1171360:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr8_1:982151-982170 Msa1171360:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr8_1:982718-982737 Msa1171360:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr8_1:983164-983183 Msa1171360:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr8_1:983208-983227 Msa1171360:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr8_1:983215-983234 Msa1171360:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr8_1:983377-983396 Msa1171360:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr8_1:983485-983504 Msa1171360:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr8_1:983553-983572 Msa1171360:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr8_1:983578-983597 Msa1171360:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr8_1:983579-983598 Msa1171360:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr8_1:983588-983607 Msa1171360:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr8_1:983592-983611 Msa1171360:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr8_1:983598-983617 Msa1171360:intron 45.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr8_1:982379-982398 Msa1171360:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr8_1:982428-982447 None:intergenic 5.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr8_1:982379-982398 Msa1171360:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr8_1:982428-982447 None:intergenic 5.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr8_1:982755-982774 Msa1171360:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr8_1:983567-983586 Msa1171360:intron 50.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr8_1:982755-982774 Msa1171360:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr8_1:983567-983586 Msa1171360:intron 50.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr8_1:983366-983385 Msa1171360:intron 55.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr8_1:983366-983385 Msa1171360:intron 55.0%
TGGCTGCCCTGACCTACTCA+TGG + chr8_1:982160-982179 None:intergenic 60.0%
TGGCTGCCCTGACCTACTCA+TGG + chr8_1:982160-982179 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 982080 983797 982080 ID=Msa1171360;Name=Msa1171360
chr8_1 mRNA 982080 983797 982080 ID=Msa1171360-mRNA-1;Parent=Msa1171360;Name=Msa1171360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|4|357|80
chr8_1 exon 982080 982499 982080 ID=Msa1171360-mRNA-1:exon:267;Parent=Msa1171360-mRNA-1
chr8_1 exon 982612 982733 982612 ID=Msa1171360-mRNA-1:exon:266;Parent=Msa1171360-mRNA-1
chr8_1 exon 983553 983575 983553 ID=Msa1171360-mRNA-1:exon:265;Parent=Msa1171360-mRNA-1
chr8_1 exon 983684 983797 983684 ID=Msa1171360-mRNA-1:exon:264;Parent=Msa1171360-mRNA-1
chr8_1 five_prime_UTR 983719 983797 983719 ID=Msa1171360-mRNA-1:five_prime_utr;Parent=Msa1171360-mRNA-1
chr8_1 CDS 983684 983718 983684 ID=Msa1171360-mRNA-1:cds;Parent=Msa1171360-mRNA-1
chr8_1 CDS 983553 983575 983553 ID=Msa1171360-mRNA-1:cds;Parent=Msa1171360-mRNA-1
chr8_1 CDS 982612 982733 982612 ID=Msa1171360-mRNA-1:cds;Parent=Msa1171360-mRNA-1
chr8_1 CDS 982437 982499 982437 ID=Msa1171360-mRNA-1:cds;Parent=Msa1171360-mRNA-1
chr8_1 three_prime_UTR 982080 982436 982080 ID=Msa1171360-mRNA-1:three_prime_utr;Parent=Msa1171360-mRNA-1
Gene Sequence

>Msa1171360

ATGAGTAGGTCAGGGCAGCCACCAGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTCGACCAATTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTGATCAGAGGAAATAGTGTGGTCACTGTAGAGGCGCTTGAACCAGTGAACAGAAGCATCTAA

Protein sequence

>Msa1171360

MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI*