AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0414800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414800 MtrunA17_Chr3g0107911 98.148 270 4 1 1 270 1 269 0.0 540
Msa0414800 MtrunA17_Chr5g0432801 83.942 274 39 3 1 269 1 274 2.08e-147 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414800 AT5G20920.3 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0414800 AT5G20920.1 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0414800 AT5G20920.2 75.000 268 61 6 1 265 1 265 5.19e-130 369
Msa0414800 AT3G07920.1 70.395 152 37 2 118 265 17 164 1.03e-70 215
Msa0414800 AT5G01940.2 57.042 142 56 3 114 254 72 209 6.37e-49 161
Msa0414800 AT5G01940.3 57.042 142 56 3 114 254 104 241 9.27e-49 162
Msa0414800 AT5G01940.1 53.846 156 63 4 114 262 72 225 1.01e-46 156

Find 76 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCGGAAC+TGG 0.130326 3_2:-60584314 Msa0414800:CDS
AAAATTCCTTCGAAGTTCTT+TGG 0.281091 3_2:+60584235 None:intergenic
CGTCGGTCTCCAGCAAGTTC+TGG 0.286919 3_2:+60584763 None:intergenic
AGTCGGTTAAATAAGATAAC+TGG 0.326850 3_2:-60583220 Msa0414800:three_prime_UTR
TCCTTTGACAGTATTGTGTC+AGG 0.386643 3_2:+60584080 None:intergenic
CCTTGCAACCTCGTTACCCT+TGG 0.397283 3_2:-60585401 Msa0414800:CDS
GAGAATAATCCAGAACTTGC+TGG 0.427102 3_2:-60584772 Msa0414800:CDS
TTAATTTACATGTGAAAACT+AGG 0.443687 3_2:-60583355 Msa0414800:three_prime_UTR
GATGAATATGTCATTTGCCT+TGG 0.446437 3_2:-60584113 Msa0414800:CDS
GGGTTTGACAGTACTTTAGC+TGG 0.446946 3_2:-60585767 Msa0414800:CDS
GCAACAAAACCAGCCTTGAT+AGG 0.448200 3_2:+60583438 None:intergenic
GTTCTTTCTCCGGTGTGAAA+AGG 0.449900 3_2:-60584048 Msa0414800:intron
CATGTAGGTCAAGCAAAAGT+TGG 0.450106 3_2:+60583316 None:intergenic
AGAGCGGAGCGAGAGAAATC+TGG 0.450896 3_2:+60587345 None:intergenic
AAGAAAGCCATGACATGATC+TGG 0.453989 3_2:+60584328 None:intergenic
GGTACAAGTGGTTCTCTAGA+TGG 0.461160 3_2:-60584292 Msa0414800:CDS
CTTGCAACCTCGTTACCCTT+GGG 0.463993 3_2:-60585400 Msa0414800:CDS
GTCAAGCAAAAGTTGGGAAA+TGG 0.465103 3_2:+60583323 None:intergenic
CGTGTTGGCCGTAGGACTGC+GGG 0.465591 3_2:-60583414 Msa0414800:CDS
TCTAGATGGACAGCAGAGAT+TGG 0.466810 3_2:-60584278 Msa0414800:CDS
TATTGCTTGCAGTGTGGATC+AGG 0.472397 3_2:-60583474 Msa0414800:intron
ACTGTGTCTGATGATGCTAT+TGG 0.491803 3_2:+60587389 None:intergenic
GCTTTCTTGCTTGCGGAACT+GGG 0.492020 3_2:-60584313 Msa0414800:CDS
AAGATCAGTTGCACCTATCA+AGG 0.492968 3_2:-60583451 Msa0414800:CDS
TGTCATGGCTTTCTTGCTTG+CGG 0.497308 3_2:-60584320 Msa0414800:CDS
AGAACCGTTTGTTCTTTCTC+CGG 0.497985 3_2:-60584058 Msa0414800:CDS
GTGCCCTCACGAAGCACTTG+TGG 0.500600 3_2:+60584721 None:intergenic
CACACCGGAGAAAGAACAAA+CGG 0.501705 3_2:+60584054 None:intergenic
TAATTTACATGTGAAAACTA+GGG 0.505394 3_2:-60583354 Msa0414800:three_prime_UTR
TTGTTGCTCGTGTTGGCCGT+AGG 0.510944 3_2:-60583422 Msa0414800:CDS
TCAGTTGCACCTATCAAGGC+TGG 0.525265 3_2:-60583447 Msa0414800:CDS
ATGTAGGTCAAGCAAAAGTT+GGG 0.525415 3_2:+60583317 None:intergenic
ATGTCCCTCCCGCAGTCCTA+CGG 0.525965 3_2:+60583406 None:intergenic
GATCATGCTGAAGAGAATGA+AGG 0.536109 3_2:-60585435 Msa0414800:CDS
AGAGATTGGTTGTGAAGGGA+AGG 0.537518 3_2:-60584264 Msa0414800:CDS
ATCATGCTGAAGAGAATGAA+GGG 0.539765 3_2:-60585434 Msa0414800:CDS
TTACATGTTGATCTTTGAGT+CGG 0.541633 3_2:-60583237 Msa0414800:three_prime_UTR
TCCTGACACAATACTGTCAA+AGG 0.542246 3_2:-60584081 Msa0414800:CDS
CAGCAGAGATTGGTTGTGAA+GGG 0.544525 3_2:-60584268 Msa0414800:CDS
TCATCAAGATCTACCACTGC+GGG 0.548138 3_2:+60585979 None:intergenic
ACCGACGGAGAACTGTTATG+AGG 0.549889 3_2:-60584747 Msa0414800:CDS
TGAAGCACAGATTGATGTGA+AGG 0.549994 3_2:-60586294 Msa0414800:CDS
CAATAAACTCAGCTGAAGTA+CGG 0.559028 3_2:+60583286 None:intergenic
CCCTCACGAAGCACTTGTGG+AGG 0.572134 3_2:+60584724 None:intergenic
ACAGATTGATGTGAAGGAAG+AGG 0.574813 3_2:-60586288 Msa0414800:CDS
GAGAAGACAGAAAATCTGTC+GGG 0.576064 3_2:-60585934 Msa0414800:intron
GCTCCGCTCTCTCCTTCGAT+CGG 0.576120 3_2:-60587332 Msa0414800:five_prime_UTR
TCGTGTTGGCCGTAGGACTG+CGG 0.579876 3_2:-60583415 Msa0414800:CDS
GCCTCCACAAGTGCTTCGTG+AGG 0.584535 3_2:-60584725 Msa0414800:CDS
ACAGCAGAGATTGGTTGTGA+AGG 0.584946 3_2:-60584269 Msa0414800:CDS
TGCTTAGGTTTCAGTAACCA+TGG 0.585520 3_2:-60586321 Msa0414800:intron
CTTGCGGAACTGGGTACAAG+TGG 0.589169 3_2:-60584304 Msa0414800:CDS
CACGATCACTTCCTTCCCAA+GGG 0.589285 3_2:+60585385 None:intergenic
GCCTCATAACAGTTCTCCGT+CGG 0.590654 3_2:+60584746 None:intergenic
CAACCTCGTTACCCTTGGGA+AGG 0.592495 3_2:-60585396 Msa0414800:CDS
TTTGCACCAAAGAACTTCGA+AGG 0.593663 3_2:-60584241 Msa0414800:CDS
TCACCGATCGAAGGAGAGAG+CGG 0.594875 3_2:+60587329 None:intergenic
TCACGATCACTTCCTTCCCA+AGG 0.596987 3_2:+60585384 None:intergenic
AATCTGTGCTTCATCTGCCA+TGG 0.597125 3_2:+60586304 None:intergenic
CCAAGGGTAACGAGGTTGCA+AGG 0.598454 3_2:+60585401 None:intergenic
AATTTACATGTGAAAACTAG+GGG 0.598512 3_2:-60583353 Msa0414800:three_prime_UTR
TGAGAAGACAGAAAATCTGT+CGG 0.602216 3_2:-60585935 Msa0414800:CDS
CATACGAATTCACCGATCGA+AGG 0.603428 3_2:+60587320 None:intergenic
TGATGATTCAGTAGACAAGT+TGG 0.613548 3_2:-60585959 Msa0414800:CDS
CTTCCTTCCCAAGGGTAACG+AGG 0.616919 3_2:+60585393 None:intergenic
CCTCCACAAGTGCTTCGTGA+GGG 0.624335 3_2:-60584724 Msa0414800:CDS
CAGAACTTGCTGGAGACCGA+CGG 0.631347 3_2:-60584762 Msa0414800:CDS
GTCTGATGATGCTATTGGAA+CGG 0.632784 3_2:+60587394 None:intergenic
AAGTACGGTATACAACATGT+AGG 0.642394 3_2:+60583301 None:intergenic
TCATGCTGAAGAGAATGAAG+GGG 0.642946 3_2:-60585433 Msa0414800:CDS
GTTGGCCGTAGGACTGCGGG+AGG 0.652534 3_2:-60583411 Msa0414800:CDS
TCGGCAGCCAGATCATGTCA+TGG 0.653346 3_2:-60584335 Msa0414800:CDS
TGATCGTGATTATCAATACG+AGG 0.718816 3_2:-60585370 Msa0414800:CDS
ATCATCAAGATCTACCACTG+CGG 0.727185 3_2:+60585978 None:intergenic
TTGGCCGTAGGACTGCGGGA+GGG 0.729821 3_2:-60583410 Msa0414800:CDS
TCGTGATTATCAATACGAGG+AGG 0.739399 3_2:-60585367 Msa0414800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAATAAATCGATTTTA+GGG + chr3_2:60583332-60583351 None:intergenic 10.0%
!!! AAATAAAATAAATCGATTTT+AGG + chr3_2:60583333-60583352 None:intergenic 10.0%
!!! TTTTTTATTGTTCTAATTTC+TGG - chr3_2:60583417-60583436 Msa0414800:CDS 15.0%
!! TTTATAAGCTTAAAAATCAT+GGG + chr3_2:60583461-60583480 None:intergenic 15.0%
!!! TTTTTGCTAATTAATCAATT+GGG - chr3_2:60583498-60583517 Msa0414800:intron 15.0%
!!! TTTTCTTTCTTAATTGTTAT+TGG - chr3_2:60583559-60583578 Msa0414800:intron 15.0%
!!! TTTCTTTCTTAATTGTTATT+GGG - chr3_2:60583560-60583579 Msa0414800:intron 15.0%
!! TAAATCAATAATCAAAATCA+AGG + chr3_2:60583675-60583694 None:intergenic 15.0%
!!! TTGATTTTGATTATTGATTT+AGG - chr3_2:60583674-60583693 Msa0414800:intron 15.0%
!!! TATTTTATGCTATTAAGTTT+TGG - chr3_2:60584735-60584754 Msa0414800:CDS 15.0%
!!! ATATTTTTATTGTTGATTGT+AGG - chr3_2:60585003-60585022 Msa0414800:intron 15.0%
!! CTAAAAAGAACAAAATATAT+AGG + chr3_2:60586476-60586495 None:intergenic 15.0%
!! TATAAGAGAAACTATTAAAA+AGG + chr3_2:60586787-60586806 None:intergenic 15.0%
!! AAAATATCATTGAAATTGTT+CGG + chr3_2:60586995-60587014 None:intergenic 15.0%
!! CATGTAAATTAAAAAAAGAA+AGG + chr3_2:60587245-60587264 None:intergenic 15.0%
!! TTATAAGCTTAAAAATCATG+GGG + chr3_2:60583460-60583479 None:intergenic 20.0%
!! CTTTATAAGCTTAAAAATCA+TGG + chr3_2:60583462-60583481 None:intergenic 20.0%
!!! GTTTTTGCTAATTAATCAAT+TGG - chr3_2:60583497-60583516 Msa0414800:intron 20.0%
!!! TTAATCAATTGGGTTTTTTT+AGG - chr3_2:60583508-60583527 Msa0414800:intron 20.0%
!!! TAATCAATTGGGTTTTTTTA+GGG - chr3_2:60583509-60583528 Msa0414800:intron 20.0%
!!! AGTATCGTATTTTATTATCT+AGG - chr3_2:60584076-60584095 Msa0414800:CDS 20.0%
!!! TTTTTCTTCTTCTTTTTAGT+AGG + chr3_2:60584605-60584624 None:intergenic 20.0%
!! TTAATTTCCCTTAAGAATTA+AGG + chr3_2:60585119-60585138 None:intergenic 20.0%
!! AATTCTTAAGGGAAATTAAT+TGG - chr3_2:60585120-60585139 Msa0414800:intron 20.0%
!!! TTTATGCTACTTTTCATATT+TGG - chr3_2:60585386-60585405 Msa0414800:CDS 20.0%
!!! ATATTTTGGAATTCTTAACA+TGG - chr3_2:60585485-60585504 Msa0414800:intron 20.0%
!!! AGGTAGTATTTGTTTATTTT+TGG - chr3_2:60585737-60585756 Msa0414800:intron 20.0%
!!! AACTGTTTTTGTGAATTTTA+TGG - chr3_2:60585916-60585935 Msa0414800:intron 20.0%
!! GTAATTTATTATTCAGTTGT+TGG - chr3_2:60585964-60585983 Msa0414800:CDS 20.0%
!! GTAGTTATTTGAGAAAATTA+GGG + chr3_2:60586101-60586120 None:intergenic 20.0%
!! TGTAGTTATTTGAGAAAATT+AGG + chr3_2:60586102-60586121 None:intergenic 20.0%
!!! GATTTTAATGCAATATAGAA+AGG + chr3_2:60586193-60586212 None:intergenic 20.0%
!! AGACATAAACAAAATGATAA+TGG + chr3_2:60586229-60586248 None:intergenic 20.0%
!! GTTATCAATTTCTTAATTTC+AGG + chr3_2:60586665-60586684 None:intergenic 20.0%
!!! GATTTGAAATATTCAACTTA+AGG + chr3_2:60586883-60586902 None:intergenic 20.0%
!!! CTTTATTTCCTTAAATTGTA+GGG + chr3_2:60587052-60587071 None:intergenic 20.0%
!! TACAATTTAAGGAAATAAAG+CGG - chr3_2:60587052-60587071 Msa0414800:intron 20.0%
!!! TATCTTTTACTTTATGATGA+TGG - chr3_2:60587091-60587110 Msa0414800:intron 20.0%
!!! ATCTTTTACTTTATGATGAT+GGG - chr3_2:60587092-60587111 Msa0414800:intron 20.0%
!! TTAATTTACATGTGAAAACT+AGG - chr3_2:60587253-60587272 Msa0414800:intron 20.0%
!! TAATTTACATGTGAAAACTA+GGG - chr3_2:60587254-60587273 Msa0414800:intron 20.0%
!! CAACTCAGATTAAAAATAAA+TGG + chr3_2:60587419-60587438 None:intergenic 20.0%
!!! TCAAAAACCCTTTTCTAAAA+CGG + chr3_2:60583192-60583211 None:intergenic 25.0%
! CAAGAAAAACAAACTAAACT+GGG + chr3_2:60583384-60583403 None:intergenic 25.0%
! ACAAGAAAAACAAACTAAAC+TGG + chr3_2:60583385-60583404 None:intergenic 25.0%
!!! TTATTGATTTAGGCTTTGTT+TGG - chr3_2:60583684-60583703 Msa0414800:intron 25.0%
! CATAACATAAACACTTATCA+TGG + chr3_2:60583749-60583768 None:intergenic 25.0%
!! ATTGGCTTATTTGAACTTAT+TGG + chr3_2:60583952-60583971 None:intergenic 25.0%
! CACAGATAGTAATAAACTAA+GGG + chr3_2:60583984-60584003 None:intergenic 25.0%
! TATAATATTTGTCGAAGATG+TGG + chr3_2:60584239-60584258 None:intergenic 25.0%
!!! TTTCTAGTTTTGTTTTGCTT+AGG - chr3_2:60584272-60584291 Msa0414800:CDS 25.0%
!!! TAAGTTTGCACAATTGATTT+TGG - chr3_2:60584352-60584371 Msa0414800:intron 25.0%
!!! ATTTTGGTAGTTTTATGCAT+TGG - chr3_2:60584368-60584387 Msa0414800:intron 25.0%
!!! TTCAAATCTCTTTGATTTGT+TGG - chr3_2:60584508-60584527 Msa0414800:intron 25.0%
!!! TTCTTTTTAGTAGGATCAAA+TGG + chr3_2:60584596-60584615 None:intergenic 25.0%
!!! GTCTTTAATGTTATTTTCTG+AGG - chr3_2:60584757-60584776 Msa0414800:CDS 25.0%
! TATAAATTGTGTTTGAGAGT+TGG + chr3_2:60585091-60585110 None:intergenic 25.0%
! ATATCATGCCTTAATTCTTA+AGG - chr3_2:60585108-60585127 Msa0414800:intron 25.0%
! TATCATGCCTTAATTCTTAA+GGG - chr3_2:60585109-60585128 Msa0414800:intron 25.0%
! ATTCAGTTGAGAAACATTTA+TGG + chr3_2:60585360-60585379 None:intergenic 25.0%
!! TACTTTTCATATTTGGATAG+TGG - chr3_2:60585393-60585412 Msa0414800:CDS 25.0%
! ATATAAACACATATTTGAGG+AGG + chr3_2:60585538-60585557 None:intergenic 25.0%
! TCCTCAAATATGTGTTTATA+TGG - chr3_2:60585537-60585556 Msa0414800:intron 25.0%
! TCCATATAAACACATATTTG+AGG + chr3_2:60585541-60585560 None:intergenic 25.0%
! ATATATCATGAAGCTATTGT+TGG + chr3_2:60585644-60585663 None:intergenic 25.0%
! GTAGAGAAAGTAAAAATACT+TGG + chr3_2:60585669-60585688 None:intergenic 25.0%
!!! TGTTTTTTGATAGAACACTA+TGG + chr3_2:60586735-60586754 None:intergenic 25.0%
!!! AATTTGAAACATTTTCCTAC+AGG + chr3_2:60586849-60586868 None:intergenic 25.0%
!! CTTTCATAAGCAATTTTTCA+TGG + chr3_2:60586914-60586933 None:intergenic 25.0%
!! CAGTCTCTAAAAACATATTA+CGG + chr3_2:60587018-60587037 None:intergenic 25.0%
!!! GCTTTATTTCCTTAAATTGT+AGG + chr3_2:60587053-60587072 None:intergenic 25.0%
! ACAATTTAAGGAAATAAAGC+GGG - chr3_2:60587053-60587072 Msa0414800:intron 25.0%
! AATTTACATGTGAAAACTAG+GGG - chr3_2:60587255-60587274 Msa0414800:intron 25.0%
!! AGTTTATTGCAGTACATTTT+TGG - chr3_2:60587336-60587355 Msa0414800:five_prime_UTR 25.0%
!!! TTTTTAATCTGAGTTGAATC+AGG - chr3_2:60587423-60587442 Msa0414800:five_prime_UTR 25.0%
TAAACTGGGTATTCAAAAAG+GGG + chr3_2:60583370-60583389 None:intergenic 30.0%
CTAAACTGGGTATTCAAAAA+GGG + chr3_2:60583371-60583390 None:intergenic 30.0%
ACTAAACTGGGTATTCAAAA+AGG + chr3_2:60583372-60583391 None:intergenic 30.0%
!! TGCTAAGAATCTCTTTGTTT+TGG - chr3_2:60583606-60583625 Msa0414800:intron 30.0%
GCACAGATAGTAATAAACTA+AGG + chr3_2:60583985-60584004 None:intergenic 30.0%
! CTTCATTCTTTCTATGCTTT+TGG - chr3_2:60584012-60584031 Msa0414800:intron 30.0%
!! TTAGTCTTTTGTATCAAGTC+AGG - chr3_2:60584150-60584169 Msa0414800:intron 30.0%
! GTGACTGGTTATAACTTATA+AGG - chr3_2:60584411-60584430 Msa0414800:intron 30.0%
! TAGTGACTTGTATTCTTAGT+TGG - chr3_2:60584482-60584501 Msa0414800:intron 30.0%
AATCTGCAATTAACAAATCC+AGG + chr3_2:60584570-60584589 None:intergenic 30.0%
AATTAGAATTGTTCAAGGAC+AGG + chr3_2:60584797-60584816 None:intergenic 30.0%
AGGCTAATTAGAATTGTTCA+AGG + chr3_2:60584802-60584821 None:intergenic 30.0%
CAATAATTCAAATGACCTAC+AGG + chr3_2:60584889-60584908 None:intergenic 30.0%
GTAGGTCATTTGAATTATTG+TGG - chr3_2:60584889-60584908 Msa0414800:intron 30.0%
! AATTTTACACCGCATTTCAA+GGG + chr3_2:60585307-60585326 None:intergenic 30.0%
! TAATTTTACACCGCATTTCA+AGG + chr3_2:60585308-60585327 None:intergenic 30.0%
TGAGAAACATTTATGGAACT+AGG + chr3_2:60585353-60585372 None:intergenic 30.0%
!!! TGTCGCCATATTAGTTTTAT+AGG - chr3_2:60585438-60585457 Msa0414800:intron 30.0%
CACAGCCTATAAAACTAATA+TGG + chr3_2:60585446-60585465 None:intergenic 30.0%
!!! TAGTTTTATAGGCTGTGTTT+TGG - chr3_2:60585449-60585468 Msa0414800:intron 30.0%
!! AGTTTTATAGGCTGTGTTTT+GGG - chr3_2:60585450-60585469 Msa0414800:intron 30.0%
TTGAGTCGTTGTTGTATTAT+TGG - chr3_2:60585608-60585627 Msa0414800:intron 30.0%
! GCATTTTCTTCTGTTATCAT+AGG - chr3_2:60585717-60585736 Msa0414800:intron 30.0%
! AATCAACATACGTTTTGCAA+AGG + chr3_2:60585943-60585962 None:intergenic 30.0%
GCTACATGTATAATACATGT+AGG - chr3_2:60585986-60586005 Msa0414800:CDS 30.0%
!! TACATGTAGGCATGTTTTTA+TGG - chr3_2:60585999-60586018 Msa0414800:CDS 30.0%
!! TGATAATGGAAGACAAAAGT+AGG + chr3_2:60586215-60586234 None:intergenic 30.0%
AAAATTCCTTCGAAGTTCTT+TGG + chr3_2:60586376-60586395 None:intergenic 30.0%
ATATATCAGTAAGTATCTCG+TGG - chr3_2:60586402-60586421 Msa0414800:intron 30.0%
! ATAGGTCAATTTTTACTCGA+AGG + chr3_2:60586458-60586477 None:intergenic 30.0%
GTTTCTCTTATAGTCTTTCT+AGG - chr3_2:60586795-60586814 Msa0414800:intron 30.0%
! GCAATTTTTCATGGATCAAT+TGG + chr3_2:60586905-60586924 None:intergenic 30.0%
TAACATCACCCTACAATTTA+AGG - chr3_2:60587041-60587060 Msa0414800:intron 30.0%
CAATTTAAGGAAATAAAGCG+GGG - chr3_2:60587054-60587073 Msa0414800:intron 30.0%
TTACATGTTGATCTTTGAGT+CGG - chr3_2:60587371-60587390 Msa0414800:five_prime_UTR 30.0%
AGTCGGTTAAATAAGATAAC+TGG - chr3_2:60587388-60587407 Msa0414800:five_prime_UTR 30.0%
!!! AAACGCACCGTTTTAGAAAA+GGG - chr3_2:60583182-60583201 Msa0414800:three_prime_UTR 35.0%
!!! ATCTCTTTGTTTTGGCTGTA+AGG - chr3_2:60583614-60583633 Msa0414800:intron 35.0%
!!! TCTCTTTGTTTTGGCTGTAA+GGG - chr3_2:60583615-60583634 Msa0414800:intron 35.0%
!! TCGCTTTTCATAAGCTATCT+TGG - chr3_2:60583836-60583855 Msa0414800:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr3_2:60583958-60583977 Msa0414800:intron 35.0%
TAATAAACTAAGGGCCTGTT+TGG + chr3_2:60583975-60583994 None:intergenic 35.0%
GTGTCTTGATTTCTCTATTC+AGG - chr3_2:60584119-60584138 Msa0414800:intron 35.0%
! GATGTGGAATTTTGGATGAA+AGG + chr3_2:60584223-60584242 None:intergenic 35.0%
! TTGTCGAAGATGTGGAATTT+TGG + chr3_2:60584231-60584250 None:intergenic 35.0%
CAATTGTGCAAACTTACATC+AGG + chr3_2:60584348-60584367 None:intergenic 35.0%
CAGTCACATGAAACATGTAT+AGG + chr3_2:60584398-60584417 None:intergenic 35.0%
CTATACATGTTTCATGTGAC+TGG - chr3_2:60584396-60584415 Msa0414800:intron 35.0%
TAACAAATCCAGGCATTAGA+AGG + chr3_2:60584560-60584579 None:intergenic 35.0%
TGATGATTCAGTAGACAAGT+TGG - chr3_2:60584649-60584668 Msa0414800:intron 35.0%
TGAGAAGACAGAAAATCTGT+CGG - chr3_2:60584673-60584692 Msa0414800:intron 35.0%
!! CTTTTAACTGCAGTTTCTGA+GGG - chr3_2:60584820-60584839 Msa0414800:intron 35.0%
!! TTTTAACTGCAGTTTCTGAG+GGG - chr3_2:60584821-60584840 Msa0414800:intron 35.0%
TGATGCGAAAAATGACGATT+TGG - chr3_2:60585057-60585076 Msa0414800:intron 35.0%
ATCATGCTGAAGAGAATGAA+GGG - chr3_2:60585174-60585193 Msa0414800:intron 35.0%
TGATCGTGATTATCAATACG+AGG - chr3_2:60585238-60585257 Msa0414800:intron 35.0%
ACATTTATGGAACTAGGTGA+GGG + chr3_2:60585347-60585366 None:intergenic 35.0%
AACATTTATGGAACTAGGTG+AGG + chr3_2:60585348-60585367 None:intergenic 35.0%
! TATTTGGATAGTGGTTCTTG+TGG - chr3_2:60585402-60585421 Msa0414800:CDS 35.0%
TTATATGGATTCTGCTCTCA+AGG - chr3_2:60585552-60585571 Msa0414800:CDS 35.0%
TATATGGATTCTGCTCTCAA+GGG - chr3_2:60585553-60585572 Msa0414800:CDS 35.0%
TCGTTGTTGTATTATTGGTG+TGG - chr3_2:60585613-60585632 Msa0414800:intron 35.0%
CGTTGTTGTATTATTGGTGT+GGG - chr3_2:60585614-60585633 Msa0414800:intron 35.0%
!! TCTCTACTTTTGCTCTTTGT+TGG - chr3_2:60585682-60585701 Msa0414800:intron 35.0%
! ATGTTTTTCTGTGCAGCTTT+TGG - chr3_2:60585790-60585809 Msa0414800:intron 35.0%
! TGTTTTTCTGTGCAGCTTTT+GGG - chr3_2:60585791-60585810 Msa0414800:intron 35.0%
! AAACCTAGACGCATTTTCTT+AGG - chr3_2:60586025-60586044 Msa0414800:intron 35.0%
! CGCATTTTCTTAGGTGATTT+TGG - chr3_2:60586034-60586053 Msa0414800:intron 35.0%
! AACAACATGAAAAGCACATC+AGG - chr3_2:60586141-60586160 Msa0414800:intron 35.0%
! GATGAATATGTCATTTGCCT+TGG - chr3_2:60586495-60586514 Msa0414800:intron 35.0%
! GAAATTTCACCTTTTCACAC+CGG + chr3_2:60586572-60586591 None:intergenic 35.0%
GATATACATAGAGAGGGAAT+AGG + chr3_2:60586601-60586620 None:intergenic 35.0%
TGCAGAGATATACATAGAGA+GGG + chr3_2:60586607-60586626 None:intergenic 35.0%
TTGCAGAGATATACATAGAG+AGG + chr3_2:60586608-60586627 None:intergenic 35.0%
ATGTATATCTCTGCAACCTA+CGG - chr3_2:60586612-60586631 Msa0414800:intron 35.0%
AATTTCAGGAACCAATTCAC+CGG + chr3_2:60586651-60586670 None:intergenic 35.0%
TCTCCAACTCATTAATCTCT+AGG - chr3_2:60586760-60586779 Msa0414800:intron 35.0%
TTCCTACAGGATATATGAGT+TGG + chr3_2:60586836-60586855 None:intergenic 35.0%
ATGTAGGTCAAGCAAAAGTT+GGG + chr3_2:60587294-60587313 None:intergenic 35.0%
AAGTACGGTATACAACATGT+AGG + chr3_2:60587310-60587329 None:intergenic 35.0%
CAATAAACTCAGCTGAAGTA+CGG + chr3_2:60587325-60587344 None:intergenic 35.0%
!!! GAAACGCACCGTTTTAGAAA+AGG - chr3_2:60583181-60583200 Msa0414800:three_prime_UTR 40.0%
! GTCTGATGATGCTATTGGAA+CGG + chr3_2:60583217-60583236 None:intergenic 40.0%
! ACTGTGTCTGATGATGCTAT+TGG + chr3_2:60583222-60583241 None:intergenic 40.0%
AAGCACTTGTCAGACTGTTT+AGG + chr3_2:60583926-60583945 None:intergenic 40.0%
TGCTTAGGTTTCAGTAACCA+TGG - chr3_2:60584287-60584306 Msa0414800:CDS 40.0%
TGAAGCACAGATTGATGTGA+AGG - chr3_2:60584314-60584333 Msa0414800:CDS 40.0%
ACAGATTGATGTGAAGGAAG+AGG - chr3_2:60584320-60584339 Msa0414800:CDS 40.0%
TTGTACTACCTTCTAATGCC+TGG - chr3_2:60584549-60584568 Msa0414800:intron 40.0%
ATCATCAAGATCTACCACTG+CGG + chr3_2:60584633-60584652 None:intergenic 40.0%
GAGAAGACAGAAAATCTGTC+GGG - chr3_2:60584674-60584693 Msa0414800:intron 40.0%
CCTCAGAAACTGCAGTTAAA+AGG + chr3_2:60584822-60584841 None:intergenic 40.0%
!! CCTTTTAACTGCAGTTTCTG+AGG - chr3_2:60584819-60584838 Msa0414800:intron 40.0%
AAGAAGAAGAAGAAGCCTGT+AGG - chr3_2:60584871-60584890 Msa0414800:intron 40.0%
! GCGAAAAATGACGATTTGGA+TGG - chr3_2:60585061-60585080 Msa0414800:intron 40.0%
ATTCTCTTCAGCATGATCTG+AGG + chr3_2:60585171-60585190 None:intergenic 40.0%
GATCATGCTGAAGAGAATGA+AGG - chr3_2:60585173-60585192 Msa0414800:intron 40.0%
TCATGCTGAAGAGAATGAAG+GGG - chr3_2:60585175-60585194 Msa0414800:intron 40.0%
TCGTGATTATCAATACGAGG+AGG - chr3_2:60585241-60585260 Msa0414800:intron 40.0%
!! TTTATAGGCTGTGTTTTGGG+TGG - chr3_2:60585453-60585472 Msa0414800:intron 40.0%
!! TTATAGGCTGTGTTTTGGGT+GGG - chr3_2:60585454-60585473 Msa0414800:intron 40.0%
GAGAATAATCCAGAACTTGC+TGG - chr3_2:60585836-60585855 Msa0414800:intron 40.0%
TCACCTAAGAAAATGCGTCT+AGG + chr3_2:60586031-60586050 None:intergenic 40.0%
! GTCTTGCTACCTTGTCTTTT+AGG - chr3_2:60586245-60586264 Msa0414800:intron 40.0%
!!! CCTTGTCTTTTAGGATGCAT+CGG - chr3_2:60586254-60586273 Msa0414800:intron 40.0%
AAGAAAGCCATGACATGATC+TGG + chr3_2:60586283-60586302 None:intergenic 40.0%
TTTGCACCAAAGAACTTCGA+AGG - chr3_2:60586367-60586386 Msa0414800:intron 40.0%
TCCTGACACAATACTGTCAA+AGG - chr3_2:60586527-60586546 Msa0414800:intron 40.0%
TCCTTTGACAGTATTGTGTC+AGG + chr3_2:60586531-60586550 None:intergenic 40.0%
AGAACCGTTTGTTCTTTCTC+CGG - chr3_2:60586550-60586569 Msa0414800:intron 40.0%
GGACCTAGAGATTAATGAGT+TGG + chr3_2:60586766-60586785 None:intergenic 40.0%
! TATATGAGTTGGAGACCTAG+AGG + chr3_2:60586825-60586844 None:intergenic 40.0%
CTCCAACTCATATATCCTGT+AGG - chr3_2:60586831-60586850 Msa0414800:intron 40.0%
AAGATCAGTTGCACCTATCA+AGG - chr3_2:60587157-60587176 Msa0414800:intron 40.0%
GTCAAGCAAAAGTTGGGAAA+TGG + chr3_2:60587288-60587307 None:intergenic 40.0%
CATGTAGGTCAAGCAAAAGT+TGG + chr3_2:60587295-60587314 None:intergenic 40.0%
CATACGAATTCACCGATCGA+AGG + chr3_2:60583291-60583310 None:intergenic 45.0%
AACTAAGGGCCTGTTTGGAT+TGG + chr3_2:60583970-60583989 None:intergenic 45.0%
AATCTGTGCTTCATCTGCCA+TGG + chr3_2:60584307-60584326 None:intergenic 45.0%
TCATCAAGATCTACCACTGC+GGG + chr3_2:60584632-60584651 None:intergenic 45.0%
GGGTTTGACAGTACTTTAGC+TGG - chr3_2:60584841-60584860 Msa0414800:intron 45.0%
TATGCCTCTCCCTTGAAATG+CGG - chr3_2:60585295-60585314 Msa0414800:intron 45.0%
!! TATAGGCTGTGTTTTGGGTG+GGG - chr3_2:60585455-60585474 Msa0414800:intron 45.0%
! GGTGGGGTCTTTGCATATTT+TGG - chr3_2:60585471-60585490 Msa0414800:intron 45.0%
CCGATGCATCCTAAAAGACA+AGG + chr3_2:60586257-60586276 None:intergenic 45.0%
TGTCATGGCTTTCTTGCTTG+CGG - chr3_2:60586288-60586307 Msa0414800:CDS 45.0%
GGTACAAGTGGTTCTCTAGA+TGG - chr3_2:60586316-60586335 Msa0414800:exon 45.0%
TCTAGATGGACAGCAGAGAT+TGG - chr3_2:60586330-60586349 Msa0414800:intron 45.0%
! ACAGCAGAGATTGGTTGTGA+AGG - chr3_2:60586339-60586358 Msa0414800:intron 45.0%
! CAGCAGAGATTGGTTGTGAA+GGG - chr3_2:60586340-60586359 Msa0414800:intron 45.0%
! AGAGATTGGTTGTGAAGGGA+AGG - chr3_2:60586344-60586363 Msa0414800:intron 45.0%
! TGTCAGGACTTTTGCATCCA+AGG + chr3_2:60586515-60586534 None:intergenic 45.0%
CACACCGGAGAAAGAACAAA+CGG + chr3_2:60586557-60586576 None:intergenic 45.0%
GTTCTTTCTCCGGTGTGAAA+AGG - chr3_2:60586560-60586579 Msa0414800:intron 45.0%
! CAAGCCTTATCCCATTGAGT+GGG - chr3_2:60586685-60586704 Msa0414800:intron 45.0%
! AAGCCTTATCCCATTGAGTG+GGG - chr3_2:60586686-60586705 Msa0414800:intron 45.0%
GTCTTTCTAGGTCTTCCTCT+AGG - chr3_2:60586807-60586826 Msa0414800:intron 45.0%
GTAGTGTATTGCTTGCAGTG+TGG - chr3_2:60587128-60587147 Msa0414800:intron 45.0%
TATTGCTTGCAGTGTGGATC+AGG - chr3_2:60587134-60587153 Msa0414800:intron 45.0%
GCAACAAAACCAGCCTTGAT+AGG + chr3_2:60587173-60587192 None:intergenic 45.0%
GAAGAAAAAGAAGCCCGCAG+TGG - chr3_2:60584616-60584635 Msa0414800:intron 50.0%
CTTGCAACCTCGTTACCCTT+GGG - chr3_2:60585208-60585227 Msa0414800:intron 50.0%
CACGATCACTTCCTTCCCAA+GGG + chr3_2:60585226-60585245 None:intergenic 50.0%
TCACGATCACTTCCTTCCCA+AGG + chr3_2:60585227-60585246 None:intergenic 50.0%
TACACCGCATTTCAAGGGAG+AGG + chr3_2:60585302-60585321 None:intergenic 50.0%
! TTTCTGTGCAGCTTTTGGGC+AGG - chr3_2:60585795-60585814 Msa0414800:intron 50.0%
! TTCTGTGCAGCTTTTGGGCA+GGG - chr3_2:60585796-60585815 Msa0414800:intron 50.0%
ACCGACGGAGAACTGTTATG+AGG - chr3_2:60585861-60585880 Msa0414800:intron 50.0%
GCCTCATAACAGTTCTCCGT+CGG + chr3_2:60585865-60585884 None:intergenic 50.0%
GCTTTCTTGCTTGCGGAACT+GGG - chr3_2:60586295-60586314 Msa0414800:CDS 50.0%
CTACGGAAATTGTAGAGCGC+CGG - chr3_2:60586629-60586648 Msa0414800:intron 50.0%
!! ATTGTAGAGCGCCGGTGAAT+TGG - chr3_2:60586637-60586656 Msa0414800:intron 50.0%
CCACTCAATGGGATAAGGCT+TGG + chr3_2:60586687-60586706 None:intergenic 50.0%
! CCAAGCCTTATCCCATTGAG+TGG - chr3_2:60586684-60586703 Msa0414800:intron 50.0%
CAACCCCACTCAATGGGATA+AGG + chr3_2:60586692-60586711 None:intergenic 50.0%
CTTATCCCATTGAGTGGGGT+TGG - chr3_2:60586690-60586709 Msa0414800:intron 50.0%
TGTAGCCAACCCCACTCAAT+GGG + chr3_2:60586698-60586717 None:intergenic 50.0%
ATGTAGCCAACCCCACTCAA+TGG + chr3_2:60586699-60586718 None:intergenic 50.0%
TCAGTTGCACCTATCAAGGC+TGG - chr3_2:60587161-60587180 Msa0414800:intron 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - chr3_2:60587179-60587198 Msa0414800:intron 50.0%
AGAGCGGAGCGAGAGAAATC+TGG + chr3_2:60583266-60583285 None:intergenic 55.0%
TCACCGATCGAAGGAGAGAG+CGG + chr3_2:60583282-60583301 None:intergenic 55.0%
CCAAGGGTAACGAGGTTGCA+AGG + chr3_2:60585210-60585229 None:intergenic 55.0%
CCTTGCAACCTCGTTACCCT+TGG - chr3_2:60585207-60585226 Msa0414800:intron 55.0%
CAACCTCGTTACCCTTGGGA+AGG - chr3_2:60585212-60585231 Msa0414800:intron 55.0%
CTTCCTTCCCAAGGGTAACG+AGG + chr3_2:60585218-60585237 None:intergenic 55.0%
!! CAGAACTTGCTGGAGACCGA+CGG - chr3_2:60585846-60585865 Msa0414800:intron 55.0%
CCTCCACAAGTGCTTCGTGA+GGG - chr3_2:60585884-60585903 Msa0414800:intron 55.0%
TCGGCAGCCAGATCATGTCA+TGG - chr3_2:60586273-60586292 Msa0414800:intron 55.0%
GGCTTTCTTGCTTGCGGAAC+TGG - chr3_2:60586294-60586313 Msa0414800:CDS 55.0%
CTTGCGGAACTGGGTACAAG+TGG - chr3_2:60586304-60586323 Msa0414800:CDS 55.0%
CGGCGCTCTACAATTTCCGT+AGG + chr3_2:60586631-60586650 None:intergenic 55.0%
! TTGTTGCTCGTGTTGGCCGT+AGG - chr3_2:60587186-60587205 Msa0414800:intron 55.0%
GCTCCGCTCTCTCCTTCGAT+CGG - chr3_2:60583276-60583295 Msa0414800:three_prime_UTR 60.0%
CGTCGGTCTCCAGCAAGTTC+TGG + chr3_2:60585848-60585867 None:intergenic 60.0%
GCCTCCACAAGTGCTTCGTG+AGG - chr3_2:60585883-60585902 Msa0414800:intron 60.0%
! CCCTCACGAAGCACTTGTGG+AGG + chr3_2:60585887-60585906 None:intergenic 60.0%
! GTGCCCTCACGAAGCACTTG+TGG + chr3_2:60585890-60585909 None:intergenic 60.0%
! TCGTGTTGGCCGTAGGACTG+CGG - chr3_2:60587193-60587212 Msa0414800:intron 60.0%
ATGTCCCTCCCGCAGTCCTA+CGG + chr3_2:60587205-60587224 None:intergenic 60.0%
! CGTGTTGGCCGTAGGACTGC+GGG - chr3_2:60587194-60587213 Msa0414800:intron 65.0%
TTGGCCGTAGGACTGCGGGA+GGG - chr3_2:60587198-60587217 Msa0414800:intron 65.0%
GTTGGCCGTAGGACTGCGGG+AGG - chr3_2:60587197-60587216 Msa0414800:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 60583175 60587455 60583175 ID=Msa0414800;Name=Msa0414800
chr3_2 mRNA 60583175 60587455 60583175 ID=Msa0414800-mRNA-1;Parent=Msa0414800;Name=Msa0414800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=143|1|1|1|0.88|0.8|10|229|270
chr3_2 exon 60583175 60583484 60583175 ID=Msa0414800-mRNA-1:exon:12652;Parent=Msa0414800-mRNA-1
chr3_2 exon 60584049 60584134 60584049 ID=Msa0414800-mRNA-1:exon:12651;Parent=Msa0414800-mRNA-1
chr3_2 exon 60584221 60584363 60584221 ID=Msa0414800-mRNA-1:exon:12650;Parent=Msa0414800-mRNA-1
chr3_2 exon 60584679 60584824 60584679 ID=Msa0414800-mRNA-1:exon:12649;Parent=Msa0414800-mRNA-1
chr3_2 exon 60585368 60585456 60585368 ID=Msa0414800-mRNA-1:exon:12648;Parent=Msa0414800-mRNA-1
chr3_2 exon 60585548 60585605 60585548 ID=Msa0414800-mRNA-1:exon:12647;Parent=Msa0414800-mRNA-1
chr3_2 exon 60585742 60585797 60585742 ID=Msa0414800-mRNA-1:exon:12646;Parent=Msa0414800-mRNA-1
chr3_2 exon 60585935 60586043 60585935 ID=Msa0414800-mRNA-1:exon:12645;Parent=Msa0414800-mRNA-1
chr3_2 exon 60586280 60586336 60586280 ID=Msa0414800-mRNA-1:exon:12644;Parent=Msa0414800-mRNA-1
chr3_2 exon 60587325 60587455 60587325 ID=Msa0414800-mRNA-1:exon:12643;Parent=Msa0414800-mRNA-1
chr3_2 five_prime_UTR 60587325 60587455 60587325 ID=Msa0414800-mRNA-1:five_prime_utr;Parent=Msa0414800-mRNA-1
chr3_2 five_prime_UTR 60586325 60586336 60586325 ID=Msa0414800-mRNA-1:five_prime_utr;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60586280 60586324 60586280 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60585935 60586043 60585935 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60585742 60585797 60585742 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60585548 60585605 60585548 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60585368 60585456 60585368 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60584679 60584824 60584679 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60584221 60584363 60584221 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60584049 60584134 60584049 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 CDS 60583404 60583484 60583404 ID=Msa0414800-mRNA-1:cds;Parent=Msa0414800-mRNA-1
chr3_2 three_prime_UTR 60583175 60583403 60583175 ID=Msa0414800-mRNA-1:three_prime_utr;Parent=Msa0414800-mRNA-1
Gene Sequence

>Msa0414800

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>Msa0414800

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT*