AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0366890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366890 MtrunA17_Chr3g0107911 98.148 270 4 1 1 270 1 269 0.0 540
Msa0366890 MtrunA17_Chr5g0432801 83.942 274 39 3 1 269 1 274 2.08e-147 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366890 AT5G20920.3 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0366890 AT5G20920.1 75.000 268 62 5 1 265 1 266 2.35e-131 373
Msa0366890 AT5G20920.2 75.000 268 61 6 1 265 1 265 5.19e-130 369
Msa0366890 AT3G07920.1 70.395 152 37 2 118 265 17 164 1.03e-70 215
Msa0366890 AT5G01940.2 57.042 142 56 3 114 254 72 209 6.37e-49 161
Msa0366890 AT5G01940.3 57.042 142 56 3 114 254 104 241 9.27e-49 162
Msa0366890 AT5G01940.1 53.846 156 63 4 114 262 72 225 1.01e-46 156

Find 77 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCGGAAC+TGG 0.130326 3_1:-61898961 Msa0366890:CDS
AAAATTCCTTCGAAGTTCTT+TGG 0.281091 3_1:+61898882 None:intergenic
CGTCGGTCTCCAGCAAGTTC+TGG 0.286919 3_1:+61899410 None:intergenic
AGTCGGTTAAATAAGATAAC+TGG 0.326850 3_1:-61897867 Msa0366890:three_prime_UTR
AGAACGGAAACGCACCGTTT+TGG 0.355878 3_1:-61902033 Msa0366890:five_prime_UTR
TCCTTTGACAGTATTGTGTC+AGG 0.386643 3_1:+61898727 None:intergenic
CCTTGCAACCTCGTTACCCT+TGG 0.397283 3_1:-61900048 Msa0366890:CDS
GAGAATAATCCAGAACTTGC+TGG 0.427102 3_1:-61899419 Msa0366890:CDS
TTAATTTACATGTGAAAACT+AGG 0.443687 3_1:-61898002 Msa0366890:three_prime_UTR
GATGAATATGTCATTTGCCT+TGG 0.446437 3_1:-61898760 Msa0366890:CDS
GGGTTTGACAGTACTTTAGC+TGG 0.446946 3_1:-61900414 Msa0366890:CDS
GCAACAAAACCAGCCTTGAT+AGG 0.448200 3_1:+61898085 None:intergenic
GTTCTTTCTCCGGTGTGAAA+AGG 0.449900 3_1:-61898695 Msa0366890:intron
CATGTAGGTCAAGCAAAAGT+TGG 0.450106 3_1:+61897963 None:intergenic
AGAGCGGAGCGAGAGAAATC+TGG 0.450896 3_1:+61901945 None:intergenic
AAGAAAGCCATGACATGATC+TGG 0.453989 3_1:+61898975 None:intergenic
GGTACAAGTGGTTCTCTAGA+TGG 0.461160 3_1:-61898939 Msa0366890:CDS
ACTGTGTCTGATGATGCTAT+TGG 0.463091 3_1:+61901989 None:intergenic
CTTGCAACCTCGTTACCCTT+GGG 0.463993 3_1:-61900047 Msa0366890:CDS
GTCAAGCAAAAGTTGGGAAA+TGG 0.465103 3_1:+61897970 None:intergenic
CGTGTTGGCCGTAGGACTGC+GGG 0.465591 3_1:-61898061 Msa0366890:CDS
TCTAGATGGACAGCAGAGAT+TGG 0.466810 3_1:-61898925 Msa0366890:CDS
TATTGCTTGCAGTGTGGATC+AGG 0.472397 3_1:-61898121 Msa0366890:intron
GCTTTCTTGCTTGCGGAACT+GGG 0.492020 3_1:-61898960 Msa0366890:CDS
AAGATCAGTTGCACCTATCA+AGG 0.492968 3_1:-61898098 Msa0366890:CDS
TGTCATGGCTTTCTTGCTTG+CGG 0.497308 3_1:-61898967 Msa0366890:CDS
AGAACCGTTTGTTCTTTCTC+CGG 0.497985 3_1:-61898705 Msa0366890:CDS
GTGCCCTCACGAAGCACTTG+TGG 0.500600 3_1:+61899368 None:intergenic
CACACCGGAGAAAGAACAAA+CGG 0.501705 3_1:+61898701 None:intergenic
TAATTTACATGTGAAAACTA+GGG 0.505394 3_1:-61898001 Msa0366890:three_prime_UTR
TTGTTGCTCGTGTTGGCCGT+AGG 0.510944 3_1:-61898069 Msa0366890:CDS
TCAGTTGCACCTATCAAGGC+TGG 0.525265 3_1:-61898094 Msa0366890:CDS
ATGTAGGTCAAGCAAAAGTT+GGG 0.525415 3_1:+61897964 None:intergenic
ATGTCCCTCCCGCAGTCCTA+CGG 0.525965 3_1:+61898053 None:intergenic
GATCATGCTGAAGAGAATGA+AGG 0.536109 3_1:-61900082 Msa0366890:CDS
AGAGATTGGTTGTGAAGGGA+AGG 0.537518 3_1:-61898911 Msa0366890:CDS
ATCATGCTGAAGAGAATGAA+GGG 0.539765 3_1:-61900081 Msa0366890:CDS
TTACATGTTGATCTTTGAGT+CGG 0.541633 3_1:-61897884 Msa0366890:three_prime_UTR
TCCTGACACAATACTGTCAA+AGG 0.542246 3_1:-61898728 Msa0366890:CDS
CAGCAGAGATTGGTTGTGAA+GGG 0.544525 3_1:-61898915 Msa0366890:CDS
TCATCAAGATCTACCACTGC+GGG 0.548138 3_1:+61900620 None:intergenic
ACCGACGGAGAACTGTTATG+AGG 0.549889 3_1:-61899394 Msa0366890:CDS
TGAAGCACAGATTGATGTGA+AGG 0.549994 3_1:-61900935 Msa0366890:CDS
CAATAAACTCAGCTGAAGTA+CGG 0.559028 3_1:+61897933 None:intergenic
CCCTCACGAAGCACTTGTGG+AGG 0.572134 3_1:+61899371 None:intergenic
ACAGATTGATGTGAAGGAAG+AGG 0.574813 3_1:-61900929 Msa0366890:CDS
GAGAAGACAGAAAATCTGTC+GGG 0.576064 3_1:-61900575 Msa0366890:intron
GCTCCGCTCTCTCCTTCGAT+CGG 0.576120 3_1:-61901932 Msa0366890:five_prime_UTR
TCGTGTTGGCCGTAGGACTG+CGG 0.579876 3_1:-61898062 Msa0366890:CDS
GCCTCCACAAGTGCTTCGTG+AGG 0.584535 3_1:-61899372 Msa0366890:CDS
ACAGCAGAGATTGGTTGTGA+AGG 0.584946 3_1:-61898916 Msa0366890:CDS
TGCTTAGGTTTCAGTAACCA+TGG 0.585520 3_1:-61900962 Msa0366890:intron
CTTGCGGAACTGGGTACAAG+TGG 0.589169 3_1:-61898951 Msa0366890:CDS
CACGATCACTTCCTTCCCAA+GGG 0.589285 3_1:+61900032 None:intergenic
GCCTCATAACAGTTCTCCGT+CGG 0.590654 3_1:+61899393 None:intergenic
CAACCTCGTTACCCTTGGGA+AGG 0.592495 3_1:-61900043 Msa0366890:CDS
TTTGCACCAAAGAACTTCGA+AGG 0.593663 3_1:-61898888 Msa0366890:CDS
TCACGATCACTTCCTTCCCA+AGG 0.596987 3_1:+61900031 None:intergenic
AATCTGTGCTTCATCTGCCA+TGG 0.597125 3_1:+61900945 None:intergenic
CCAAGGGTAACGAGGTTGCA+AGG 0.598454 3_1:+61900048 None:intergenic
AATTTACATGTGAAAACTAG+GGG 0.598512 3_1:-61898000 Msa0366890:three_prime_UTR
TGAGAAGACAGAAAATCTGT+CGG 0.602216 3_1:-61900576 Msa0366890:CDS
CATACGAGTTCACCGATCGA+AGG 0.606134 3_1:+61901920 None:intergenic
TGATGATTCAGTAGACAAGT+TGG 0.613548 3_1:-61900600 Msa0366890:CDS
CTTCCTTCCCAAGGGTAACG+AGG 0.616919 3_1:+61900040 None:intergenic
TCACCGATCGAAGGAGAGAG+CGG 0.621729 3_1:+61901929 None:intergenic
CCTCCACAAGTGCTTCGTGA+GGG 0.624335 3_1:-61899371 Msa0366890:CDS
CAGAACTTGCTGGAGACCGA+CGG 0.631347 3_1:-61899409 Msa0366890:CDS
GTCTGATGATGCTATTGGAA+CGG 0.632784 3_1:+61901994 None:intergenic
AAGTACGGTATACAACATGT+AGG 0.642394 3_1:+61897948 None:intergenic
TCATGCTGAAGAGAATGAAG+GGG 0.642946 3_1:-61900080 Msa0366890:CDS
GTTGGCCGTAGGACTGCGGG+AGG 0.652534 3_1:-61898058 Msa0366890:CDS
TCGGCAGCCAGATCATGTCA+TGG 0.653346 3_1:-61898982 Msa0366890:CDS
TGATCGTGATTATCAATACG+AGG 0.718816 3_1:-61900017 Msa0366890:CDS
ATCATCAAGATCTACCACTG+CGG 0.727185 3_1:+61900619 None:intergenic
TTGGCCGTAGGACTGCGGGA+GGG 0.729821 3_1:-61898057 Msa0366890:CDS
TCGTGATTATCAATACGAGG+AGG 0.739399 3_1:-61900014 Msa0366890:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATTATTTATATT+AGG - chr3_1:61898297-61898316 Msa0366890:intron 0.0%
!!! ATTAAAAAAAATCGATTTTA+GGG + chr3_1:61897982-61898001 None:intergenic 10.0%
!!! AATTAAAAAAAATCGATTTT+AGG + chr3_1:61897983-61898002 None:intergenic 10.0%
!! ATACTTAATGTTATTGTTAT+TGG - chr3_1:61898215-61898234 Msa0366890:intron 15.0%
!!! TACTTAATGTTATTGTTATT+GGG - chr3_1:61898216-61898235 Msa0366890:intron 15.0%
!!! TATTTTATGCTATTAAGTTT+TGG - chr3_1:61899338-61899357 Msa0366890:CDS 15.0%
!!! ATATTTTTATTGTTGATTGT+AGG - chr3_1:61899606-61899625 Msa0366890:intron 15.0%
!!! ATATTTTGGAATTTTTAACA+TGG - chr3_1:61900088-61900107 Msa0366890:intron 15.0%
!! CTAAAAAGAACAAAATATAT+AGG + chr3_1:61901079-61901098 None:intergenic 15.0%
!! TATAAGAGAAACTATTAAAA+AGG + chr3_1:61901390-61901409 None:intergenic 15.0%
!! AAAATATCATTGAAATTGTT+CGG + chr3_1:61901598-61901617 None:intergenic 15.0%
!! CATGTAAATTAAAAAAAGAA+AGG + chr3_1:61901848-61901867 None:intergenic 15.0%
!! TTTATAAGCTTAAACATCAT+GGG + chr3_1:61898110-61898129 None:intergenic 20.0%
!!! TTTTCGCTAATTAATCAATT+GGG - chr3_1:61898147-61898166 Msa0366890:intron 20.0%
!!! ACATGTTCATAAATTGTTTT+CGG + chr3_1:61898482-61898501 None:intergenic 20.0%
!! AGATGGTAATAATAAACTAA+GGG + chr3_1:61898590-61898609 None:intergenic 20.0%
!!! AGTATCGTATTTTATTATCT+AGG - chr3_1:61898685-61898704 Msa0366890:intron 20.0%
!!! TTTTTCTTCTTCTTTTTAGT+AGG + chr3_1:61899214-61899233 None:intergenic 20.0%
!! TTAATTTCCCTTAAGAATTA+AGG + chr3_1:61899722-61899741 None:intergenic 20.0%
!! AATTCTTAAGGGAAATTAAT+TGG - chr3_1:61899723-61899742 Msa0366890:intron 20.0%
!!! TTTATGCTACTTTTCATATT+TGG - chr3_1:61899989-61900008 Msa0366890:intron 20.0%
!!! AGGTAGTATTTGTTTATTTT+TGG - chr3_1:61900340-61900359 Msa0366890:intron 20.0%
!!! AACTGTTTTTGTGAATTTTA+TGG - chr3_1:61900519-61900538 Msa0366890:intron 20.0%
!! GTAATTTATTATTCAGTTGT+TGG - chr3_1:61900567-61900586 Msa0366890:intron 20.0%
!! GTAGTTATTTGAGAAAATTA+GGG + chr3_1:61900704-61900723 None:intergenic 20.0%
!! TGTAGTTATTTGAGAAAATT+AGG + chr3_1:61900705-61900724 None:intergenic 20.0%
!!! GATTTTAATGCAATATAGAA+AGG + chr3_1:61900796-61900815 None:intergenic 20.0%
!! AGACATAAACAAAATGATAA+TGG + chr3_1:61900832-61900851 None:intergenic 20.0%
!! GTTATCAATTTCTTAATTTC+AGG + chr3_1:61901268-61901287 None:intergenic 20.0%
!!! GATTTGAAATATTCAACTTA+AGG + chr3_1:61901486-61901505 None:intergenic 20.0%
!!! CTTTATTTCCTTAAATTGTA+GGG + chr3_1:61901655-61901674 None:intergenic 20.0%
!! TACAATTTAAGGAAATAAAG+CGG - chr3_1:61901655-61901674 Msa0366890:intron 20.0%
!!! TATCTTTTACTTTATGATGA+TGG - chr3_1:61901694-61901713 Msa0366890:intron 20.0%
!!! ATCTTTTACTTTATGATGAT+GGG - chr3_1:61901695-61901714 Msa0366890:intron 20.0%
!! TTAATTTACATGTGAAAACT+AGG - chr3_1:61901856-61901875 Msa0366890:intron 20.0%
!! TAATTTACATGTGAAAACTA+GGG - chr3_1:61901857-61901876 Msa0366890:intron 20.0%
!! CAACTCAGATTAAAAATAAA+TGG + chr3_1:61902022-61902041 None:intergenic 20.0%
! TTATAAGCTTAAACATCATG+GGG + chr3_1:61898109-61898128 None:intergenic 25.0%
! CTTTATAAGCTTAAACATCA+TGG + chr3_1:61898111-61898130 None:intergenic 25.0%
!! GTTTTCGCTAATTAATCAAT+TGG - chr3_1:61898146-61898165 Msa0366890:intron 25.0%
!!! AATCAATTGGGTTCTTTTTT+AGG - chr3_1:61898159-61898178 Msa0366890:intron 25.0%
!!! ATCAATTGGGTTCTTTTTTA+GGG - chr3_1:61898160-61898179 Msa0366890:intron 25.0%
! TATTTATATTAGGCTCTGTT+TGG - chr3_1:61898307-61898326 Msa0366890:intron 25.0%
! CATAACATAAACACTTATCA+TGG + chr3_1:61898372-61898391 None:intergenic 25.0%
!!! GCTTTTTTGAACTTATCTAT+TGG + chr3_1:61898554-61898573 None:intergenic 25.0%
! CAGATGGTAATAATAAACTA+AGG + chr3_1:61898591-61898610 None:intergenic 25.0%
! TATAATATTTGTCGAAGATG+TGG + chr3_1:61898848-61898867 None:intergenic 25.0%
!!! TTTCTAGTTTTGTTTTGCTT+AGG - chr3_1:61898881-61898900 Msa0366890:CDS 25.0%
!!! TAAGTTTGCACAATTGATTT+TGG - chr3_1:61898961-61898980 Msa0366890:CDS 25.0%
!!! ATTTTGGTAGTTTTATGCAT+TGG - chr3_1:61898977-61898996 Msa0366890:CDS 25.0%
!!! TTCAAATCTCTTTGATTTGT+TGG - chr3_1:61899117-61899136 Msa0366890:intron 25.0%
!!! TTCTTTTTAGTAGGATCAAA+TGG + chr3_1:61899205-61899224 None:intergenic 25.0%
!!! GTCTTTAATGTTATTTTCTG+AGG - chr3_1:61899360-61899379 Msa0366890:CDS 25.0%
! TATAAATTGTGTTTGAGAGT+TGG + chr3_1:61899694-61899713 None:intergenic 25.0%
! ATATCATGCCTTAATTCTTA+AGG - chr3_1:61899711-61899730 Msa0366890:intron 25.0%
! TATCATGCCTTAATTCTTAA+GGG - chr3_1:61899712-61899731 Msa0366890:intron 25.0%
! ATTCAGTTGAGAAACATTTA+TGG + chr3_1:61899963-61899982 None:intergenic 25.0%
!! TACTTTTCATATTTGGATAG+TGG - chr3_1:61899996-61900015 Msa0366890:intron 25.0%
! ATATAAACACATATTTGAGG+AGG + chr3_1:61900141-61900160 None:intergenic 25.0%
! TCCTCAAATATGTGTTTATA+TGG - chr3_1:61900140-61900159 Msa0366890:intron 25.0%
! TCCATATAAACACATATTTG+AGG + chr3_1:61900144-61900163 None:intergenic 25.0%
! ATATATCATGAAGCTATTGT+TGG + chr3_1:61900247-61900266 None:intergenic 25.0%
!!! TGTTTTTTGATAGAACACTA+TGG + chr3_1:61901338-61901357 None:intergenic 25.0%
!!! AATTTGAAACATTTTCCTAC+AGG + chr3_1:61901452-61901471 None:intergenic 25.0%
!! CTTTCATAAGCAATTTTTCA+TGG + chr3_1:61901517-61901536 None:intergenic 25.0%
!! CAGTCTCTAAAAACATATTA+CGG + chr3_1:61901621-61901640 None:intergenic 25.0%
!!! GCTTTATTTCCTTAAATTGT+AGG + chr3_1:61901656-61901675 None:intergenic 25.0%
! ACAATTTAAGGAAATAAAGC+GGG - chr3_1:61901656-61901675 Msa0366890:intron 25.0%
! AATTTACATGTGAAAACTAG+GGG - chr3_1:61901858-61901877 Msa0366890:intron 25.0%
!! AGTTTATTGCAGTACATTTT+TGG - chr3_1:61901939-61901958 Msa0366890:five_prime_UTR 25.0%
!!! TTTTTAATCTGAGTTGAATC+AGG - chr3_1:61902026-61902045 Msa0366890:five_prime_UTR 25.0%
!! TCTAAAACCCTTTTCCAAAA+CGG + chr3_1:61897842-61897861 None:intergenic 30.0%
ACCAAATTGGGTAATCAAAA+GGG + chr3_1:61898021-61898040 None:intergenic 30.0%
AACCAAATTGGGTAATCAAA+AGG + chr3_1:61898022-61898041 None:intergenic 30.0%
TCAAAAAAGCAAATCCAAAC+AGG - chr3_1:61898564-61898583 Msa0366890:intron 30.0%
! CTTCATTCTTTCTATGCTTT+TGG - chr3_1:61898621-61898640 Msa0366890:intron 30.0%
!! TTAGTCTTTTGTATCAAGTC+AGG - chr3_1:61898759-61898778 Msa0366890:CDS 30.0%
! GTGACTGGTTATAACTTATA+AGG - chr3_1:61899020-61899039 Msa0366890:intron 30.0%
! TAGTGACTTGTATTCTTAGT+TGG - chr3_1:61899091-61899110 Msa0366890:intron 30.0%
AATCTGCAATTAACAAATCC+AGG + chr3_1:61899179-61899198 None:intergenic 30.0%
AATTAGAATTGTTCAAGGAC+AGG + chr3_1:61899400-61899419 None:intergenic 30.0%
AGGCTAATTAGAATTGTTCA+AGG + chr3_1:61899405-61899424 None:intergenic 30.0%
CAATAATTCAAATGACCTAC+AGG + chr3_1:61899492-61899511 None:intergenic 30.0%
GTAGGTCATTTGAATTATTG+TGG - chr3_1:61899492-61899511 Msa0366890:intron 30.0%
! AATTTTACACCGCATTTCAA+GGG + chr3_1:61899910-61899929 None:intergenic 30.0%
! TAATTTTACACCGCATTTCA+AGG + chr3_1:61899911-61899930 None:intergenic 30.0%
TGAGAAACATTTATGGAACT+AGG + chr3_1:61899956-61899975 None:intergenic 30.0%
!!! TGTCGCCATATTAGTTTTAT+AGG - chr3_1:61900041-61900060 Msa0366890:CDS 30.0%
CACAGCCTATAAAACTAATA+TGG + chr3_1:61900049-61900068 None:intergenic 30.0%
!!! TAGTTTTATAGGCTGTGTTT+TGG - chr3_1:61900052-61900071 Msa0366890:CDS 30.0%
!! AGTTTTATAGGCTGTGTTTT+GGG - chr3_1:61900053-61900072 Msa0366890:CDS 30.0%
TTGAGTCGTTGTTGTATTAT+TGG - chr3_1:61900211-61900230 Msa0366890:CDS 30.0%
! GCATTTTCTTCTGTTATCAT+AGG - chr3_1:61900320-61900339 Msa0366890:intron 30.0%
! AATCAACATACGTTTTGCAA+AGG + chr3_1:61900546-61900565 None:intergenic 30.0%
GCTACATGTATAATACATGT+AGG - chr3_1:61900589-61900608 Msa0366890:CDS 30.0%
!! TACATGTAGGCATGTTTTTA+TGG - chr3_1:61900602-61900621 Msa0366890:CDS 30.0%
! AAACCTAAACGCATTTTCTT+AGG - chr3_1:61900628-61900647 Msa0366890:CDS 30.0%
!! TGATAATGGAAGACAAAAGT+AGG + chr3_1:61900818-61900837 None:intergenic 30.0%
AAAATTCCTTCGAAGTTCTT+TGG + chr3_1:61900979-61900998 None:intergenic 30.0%
ATATATCAGTAAGTATCTCG+TGG - chr3_1:61901005-61901024 Msa0366890:intron 30.0%
! ATAGGTCAATTTTTACTCGA+AGG + chr3_1:61901061-61901080 None:intergenic 30.0%
GTTTCTCTTATAGTCTTTCT+AGG - chr3_1:61901398-61901417 Msa0366890:intron 30.0%
! GCAATTTTTCATGGATCAAT+TGG + chr3_1:61901508-61901527 None:intergenic 30.0%
TAACATCACCCTACAATTTA+AGG - chr3_1:61901644-61901663 Msa0366890:intron 30.0%
CAATTTAAGGAAATAAAGCG+GGG - chr3_1:61901657-61901676 Msa0366890:intron 30.0%
TTACATGTTGATCTTTGAGT+CGG - chr3_1:61901974-61901993 Msa0366890:five_prime_UTR 30.0%
AGTCGGTTAAATAAGATAAC+TGG - chr3_1:61901991-61902010 Msa0366890:five_prime_UTR 30.0%
CCAAATTGGGTAATCAAAAG+GGG + chr3_1:61898020-61898039 None:intergenic 35.0%
CACGAAACACAAACCAAATT+GGG + chr3_1:61898033-61898052 None:intergenic 35.0%
ACACGAAACACAAACCAAAT+TGG + chr3_1:61898034-61898053 None:intergenic 35.0%
!!! GCCAAGAATCTCTTTGTTTT+TGG - chr3_1:61898263-61898282 Msa0366890:intron 35.0%
GCCAAAAACAAAGAGATTCT+TGG + chr3_1:61898267-61898286 None:intergenic 35.0%
!! TCGCTTTTCATAAGCTATCT+TGG - chr3_1:61898439-61898458 Msa0366890:intron 35.0%
TAATAAACTAAGGGCCTGTT+TGG + chr3_1:61898581-61898600 None:intergenic 35.0%
ATGAAGAACATTAGCACAGA+TGG + chr3_1:61898607-61898626 None:intergenic 35.0%
GTGTCTTGATTTCTCTATTC+AGG - chr3_1:61898728-61898747 Msa0366890:CDS 35.0%
! GATGTGGAATTTTGGATGAA+AGG + chr3_1:61898832-61898851 None:intergenic 35.0%
! TTGTCGAAGATGTGGAATTT+TGG + chr3_1:61898840-61898859 None:intergenic 35.0%
CAATTGTGCAAACTTACATC+AGG + chr3_1:61898957-61898976 None:intergenic 35.0%
CAGTCACATGAAACATGTAT+AGG + chr3_1:61899007-61899026 None:intergenic 35.0%
CTATACATGTTTCATGTGAC+TGG - chr3_1:61899005-61899024 Msa0366890:intron 35.0%
TAACAAATCCAGGCATTAGA+AGG + chr3_1:61899169-61899188 None:intergenic 35.0%
TGATGATTCAGTAGACAAGT+TGG - chr3_1:61899258-61899277 Msa0366890:intron 35.0%
TGAGAAGACAGAAAATCTGT+CGG - chr3_1:61899282-61899301 Msa0366890:intron 35.0%
!! CTTTTAACTGCAGTTTCTGA+GGG - chr3_1:61899423-61899442 Msa0366890:CDS 35.0%
!! TTTTAACTGCAGTTTCTGAG+GGG - chr3_1:61899424-61899443 Msa0366890:CDS 35.0%
TGATGCGAAAAATGACGATT+TGG - chr3_1:61899660-61899679 Msa0366890:intron 35.0%
ATCATGCTGAAGAGAATGAA+GGG - chr3_1:61899777-61899796 Msa0366890:intron 35.0%
TGATCGTGATTATCAATACG+AGG - chr3_1:61899841-61899860 Msa0366890:intron 35.0%
! TATTTGGATAGTGGTTCTTG+TGG - chr3_1:61900005-61900024 Msa0366890:intron 35.0%
TTATATGGATTCTGCTCTCA+AGG - chr3_1:61900155-61900174 Msa0366890:intron 35.0%
TATATGGATTCTGCTCTCAA+GGG - chr3_1:61900156-61900175 Msa0366890:intron 35.0%
TCGTTGTTGTATTATTGGTG+TGG - chr3_1:61900216-61900235 Msa0366890:CDS 35.0%
CGTTGTTGTATTATTGGTGT+GGG - chr3_1:61900217-61900236 Msa0366890:CDS 35.0%
!! TCTCTACTTTTGCTCTTTGT+TGG - chr3_1:61900285-61900304 Msa0366890:intron 35.0%
! ATGTTTTTCTGTGCAGCTTT+TGG - chr3_1:61900393-61900412 Msa0366890:CDS 35.0%
! TGTTTTTCTGTGCAGCTTTT+GGG - chr3_1:61900394-61900413 Msa0366890:CDS 35.0%
TCACCTAAGAAAATGCGTTT+AGG + chr3_1:61900634-61900653 None:intergenic 35.0%
! CGCATTTTCTTAGGTGATTT+TGG - chr3_1:61900637-61900656 Msa0366890:CDS 35.0%
! AACAACATGAAAAGCACATC+AGG - chr3_1:61900744-61900763 Msa0366890:intron 35.0%
! GATGAATATGTCATTTGCCT+TGG - chr3_1:61901098-61901117 Msa0366890:intron 35.0%
! GAAATTTCACCTTTTCACAC+CGG + chr3_1:61901175-61901194 None:intergenic 35.0%
GATATACATAGAGAGGGAAT+AGG + chr3_1:61901204-61901223 None:intergenic 35.0%
TGCAGAGATATACATAGAGA+GGG + chr3_1:61901210-61901229 None:intergenic 35.0%
TTGCAGAGATATACATAGAG+AGG + chr3_1:61901211-61901230 None:intergenic 35.0%
ATGTATATCTCTGCAACCTA+CGG - chr3_1:61901215-61901234 Msa0366890:intron 35.0%
AATTTCAGGAACCAATTCAC+CGG + chr3_1:61901254-61901273 None:intergenic 35.0%
TCTCCAACTCATTAATCTCT+AGG - chr3_1:61901363-61901382 Msa0366890:intron 35.0%
TTCCTACAGGATATATGAGT+TGG + chr3_1:61901439-61901458 None:intergenic 35.0%
ATGTAGGTCAAGCAAAAGTT+GGG + chr3_1:61901897-61901916 None:intergenic 35.0%
AAGTACGGTATACAACATGT+AGG + chr3_1:61901913-61901932 None:intergenic 35.0%
CAATAAACTCAGCTGAAGTA+CGG + chr3_1:61901928-61901947 None:intergenic 35.0%
!!! AAACGCACCGTTTTGGAAAA+GGG - chr3_1:61897832-61897851 Msa0366890:three_prime_UTR 40.0%
! GTCTGATGATGCTATTGGAA+CGG + chr3_1:61897867-61897886 None:intergenic 40.0%
! ACTGTGTCTGATGATGCTAT+TGG + chr3_1:61897872-61897891 None:intergenic 40.0%
!! CCCCTTTTGATTACCCAATT+TGG - chr3_1:61898017-61898036 Msa0366890:three_prime_UTR 40.0%
TGCTTAGGTTTCAGTAACCA+TGG - chr3_1:61898896-61898915 Msa0366890:CDS 40.0%
TGAAGCACAGATTGATGTGA+AGG - chr3_1:61898923-61898942 Msa0366890:CDS 40.0%
ACAGATTGATGTGAAGGAAG+AGG - chr3_1:61898929-61898948 Msa0366890:CDS 40.0%
TTGTACTACCTTCTAATGCC+TGG - chr3_1:61899158-61899177 Msa0366890:intron 40.0%
ATCATCAAGATCTACCACTG+CGG + chr3_1:61899242-61899261 None:intergenic 40.0%
GAGAAGACAGAAAATCTGTC+GGG - chr3_1:61899283-61899302 Msa0366890:intron 40.0%
CCTCAGAAACTGCAGTTAAA+AGG + chr3_1:61899425-61899444 None:intergenic 40.0%
!! CCTTTTAACTGCAGTTTCTG+AGG - chr3_1:61899422-61899441 Msa0366890:CDS 40.0%
AAGAAGAAGAAGAAGCCTGT+AGG - chr3_1:61899474-61899493 Msa0366890:intron 40.0%
! GCGAAAAATGACGATTTGGA+TGG - chr3_1:61899664-61899683 Msa0366890:intron 40.0%
ATTCTCTTCAGCATGATCTG+AGG + chr3_1:61899774-61899793 None:intergenic 40.0%
GATCATGCTGAAGAGAATGA+AGG - chr3_1:61899776-61899795 Msa0366890:intron 40.0%
TCATGCTGAAGAGAATGAAG+GGG - chr3_1:61899778-61899797 Msa0366890:intron 40.0%
TCGTGATTATCAATACGAGG+AGG - chr3_1:61899844-61899863 Msa0366890:intron 40.0%
ACATTTATGGAACTAGGCGA+GGG + chr3_1:61899950-61899969 None:intergenic 40.0%
AACATTTATGGAACTAGGCG+AGG + chr3_1:61899951-61899970 None:intergenic 40.0%
!! TTTATAGGCTGTGTTTTGGG+TGG - chr3_1:61900056-61900075 Msa0366890:CDS 40.0%
!! TTATAGGCTGTGTTTTGGGT+GGG - chr3_1:61900057-61900076 Msa0366890:CDS 40.0%
GAGAATAATCCAGAACTTGC+TGG - chr3_1:61900439-61900458 Msa0366890:intron 40.0%
! GTCTTGCTACCTTGTCTTTT+AGG - chr3_1:61900848-61900867 Msa0366890:intron 40.0%
!!! CCTTGTCTTTTAGGATGCAT+CGG - chr3_1:61900857-61900876 Msa0366890:intron 40.0%
AAGAAAGCCATGACATGATC+TGG + chr3_1:61900886-61900905 None:intergenic 40.0%
TTTGCACCAAAGAACTTCGA+AGG - chr3_1:61900970-61900989 Msa0366890:intron 40.0%
TCCTGACACAATACTGTCAA+AGG - chr3_1:61901130-61901149 Msa0366890:intron 40.0%
TCCTTTGACAGTATTGTGTC+AGG + chr3_1:61901134-61901153 None:intergenic 40.0%
AGAACCGTTTGTTCTTTCTC+CGG - chr3_1:61901153-61901172 Msa0366890:intron 40.0%
GGACCTAGAGATTAATGAGT+TGG + chr3_1:61901369-61901388 None:intergenic 40.0%
! TATATGAGTTGGAGACCTAG+AGG + chr3_1:61901428-61901447 None:intergenic 40.0%
CTCCAACTCATATATCCTGT+AGG - chr3_1:61901434-61901453 Msa0366890:intron 40.0%
AAGATCAGTTGCACCTATCA+AGG - chr3_1:61901760-61901779 Msa0366890:intron 40.0%
GTCAAGCAAAAGTTGGGAAA+TGG + chr3_1:61901891-61901910 None:intergenic 40.0%
CATGTAGGTCAAGCAAAAGT+TGG + chr3_1:61901898-61901917 None:intergenic 40.0%
!!! GAAACGCACCGTTTTGGAAA+AGG - chr3_1:61897831-61897850 Msa0366890:three_prime_UTR 45.0%
AATCTGTGCTTCATCTGCCA+TGG + chr3_1:61898916-61898935 None:intergenic 45.0%
TCATCAAGATCTACCACTGC+GGG + chr3_1:61899241-61899260 None:intergenic 45.0%
GGGTTTGACAGTACTTTAGC+TGG - chr3_1:61899444-61899463 Msa0366890:CDS 45.0%
TATGCCTCTCCCTTGAAATG+CGG - chr3_1:61899898-61899917 Msa0366890:intron 45.0%
!! TATAGGCTGTGTTTTGGGTG+GGG - chr3_1:61900058-61900077 Msa0366890:CDS 45.0%
! GGTGGGGTCTTTGCATATTT+TGG - chr3_1:61900074-61900093 Msa0366890:CDS 45.0%
CCGATGCATCCTAAAAGACA+AGG + chr3_1:61900860-61900879 None:intergenic 45.0%
TGTCATGGCTTTCTTGCTTG+CGG - chr3_1:61900891-61900910 Msa0366890:intron 45.0%
GGTACAAGTGGTTCTCTAGA+TGG - chr3_1:61900919-61900938 Msa0366890:intron 45.0%
TCTAGATGGACAGCAGAGAT+TGG - chr3_1:61900933-61900952 Msa0366890:CDS 45.0%
! ACAGCAGAGATTGGTTGTGA+AGG - chr3_1:61900942-61900961 Msa0366890:CDS 45.0%
! CAGCAGAGATTGGTTGTGAA+GGG - chr3_1:61900943-61900962 Msa0366890:CDS 45.0%
! AGAGATTGGTTGTGAAGGGA+AGG - chr3_1:61900947-61900966 Msa0366890:exon 45.0%
! TGTCAGGACTTTTGCATCCA+AGG + chr3_1:61901118-61901137 None:intergenic 45.0%
CACACCGGAGAAAGAACAAA+CGG + chr3_1:61901160-61901179 None:intergenic 45.0%
GTTCTTTCTCCGGTGTGAAA+AGG - chr3_1:61901163-61901182 Msa0366890:intron 45.0%
! CAAGCCTTATCCCATTGAGT+GGG - chr3_1:61901288-61901307 Msa0366890:intron 45.0%
! AAGCCTTATCCCATTGAGTG+GGG - chr3_1:61901289-61901308 Msa0366890:intron 45.0%
GTCTTTCTAGGTCTTCCTCT+AGG - chr3_1:61901410-61901429 Msa0366890:intron 45.0%
GTAGTGTATTGCTTGCAGTG+TGG - chr3_1:61901731-61901750 Msa0366890:intron 45.0%
TATTGCTTGCAGTGTGGATC+AGG - chr3_1:61901737-61901756 Msa0366890:intron 45.0%
GCAACAAAACCAGCCTTGAT+AGG + chr3_1:61901776-61901795 None:intergenic 45.0%
! AGAACGGAAACGCACCGTTT+TGG - chr3_1:61897825-61897844 Msa0366890:three_prime_UTR 50.0%
CATACGAGTTCACCGATCGA+AGG + chr3_1:61897941-61897960 None:intergenic 50.0%
GAAGAAAAAGAAGCCCGCAG+TGG - chr3_1:61899225-61899244 Msa0366890:intron 50.0%
CTTGCAACCTCGTTACCCTT+GGG - chr3_1:61899811-61899830 Msa0366890:intron 50.0%
CACGATCACTTCCTTCCCAA+GGG + chr3_1:61899829-61899848 None:intergenic 50.0%
TCACGATCACTTCCTTCCCA+AGG + chr3_1:61899830-61899849 None:intergenic 50.0%
TACACCGCATTTCAAGGGAG+AGG + chr3_1:61899905-61899924 None:intergenic 50.0%
! TTTCTGTGCAGCTTTTGGGC+AGG - chr3_1:61900398-61900417 Msa0366890:CDS 50.0%
! TTCTGTGCAGCTTTTGGGCA+GGG - chr3_1:61900399-61900418 Msa0366890:CDS 50.0%
ACCGACGGAGAACTGTTATG+AGG - chr3_1:61900464-61900483 Msa0366890:intron 50.0%
GCCTCATAACAGTTCTCCGT+CGG + chr3_1:61900468-61900487 None:intergenic 50.0%
GCTTTCTTGCTTGCGGAACT+GGG - chr3_1:61900898-61900917 Msa0366890:intron 50.0%
CTACGGAAATTGTAGAGCGC+CGG - chr3_1:61901232-61901251 Msa0366890:intron 50.0%
!! ATTGTAGAGCGCCGGTGAAT+TGG - chr3_1:61901240-61901259 Msa0366890:intron 50.0%
CCACTCAATGGGATAAGGCT+TGG + chr3_1:61901290-61901309 None:intergenic 50.0%
! CCAAGCCTTATCCCATTGAG+TGG - chr3_1:61901287-61901306 Msa0366890:intron 50.0%
CAACCCCACTCAATGGGATA+AGG + chr3_1:61901295-61901314 None:intergenic 50.0%
CTTATCCCATTGAGTGGGGT+TGG - chr3_1:61901293-61901312 Msa0366890:intron 50.0%
TGTAGCCAACCCCACTCAAT+GGG + chr3_1:61901301-61901320 None:intergenic 50.0%
ATGTAGCCAACCCCACTCAA+TGG + chr3_1:61901302-61901321 None:intergenic 50.0%
TCAGTTGCACCTATCAAGGC+TGG - chr3_1:61901764-61901783 Msa0366890:intron 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - chr3_1:61901782-61901801 Msa0366890:intron 50.0%
AGAGCGGAGCGAGAGAAATC+TGG + chr3_1:61897916-61897935 None:intergenic 55.0%
TCACCGATCGAAGGAGAGAG+CGG + chr3_1:61897932-61897951 None:intergenic 55.0%
CCAAGGGTAACGAGGTTGCA+AGG + chr3_1:61899813-61899832 None:intergenic 55.0%
CCTTGCAACCTCGTTACCCT+TGG - chr3_1:61899810-61899829 Msa0366890:intron 55.0%
CAACCTCGTTACCCTTGGGA+AGG - chr3_1:61899815-61899834 Msa0366890:intron 55.0%
CTTCCTTCCCAAGGGTAACG+AGG + chr3_1:61899821-61899840 None:intergenic 55.0%
!! CAGAACTTGCTGGAGACCGA+CGG - chr3_1:61900449-61900468 Msa0366890:intron 55.0%
CCTCCACAAGTGCTTCGTGA+GGG - chr3_1:61900487-61900506 Msa0366890:intron 55.0%
TCGGCAGCCAGATCATGTCA+TGG - chr3_1:61900876-61900895 Msa0366890:intron 55.0%
GGCTTTCTTGCTTGCGGAAC+TGG - chr3_1:61900897-61900916 Msa0366890:intron 55.0%
CTTGCGGAACTGGGTACAAG+TGG - chr3_1:61900907-61900926 Msa0366890:intron 55.0%
CGGCGCTCTACAATTTCCGT+AGG + chr3_1:61901234-61901253 None:intergenic 55.0%
! TTGTTGCTCGTGTTGGCCGT+AGG - chr3_1:61901789-61901808 Msa0366890:intron 55.0%
GCTCCGCTCTCTCCTTCGAT+CGG - chr3_1:61897926-61897945 Msa0366890:three_prime_UTR 60.0%
CGTCGGTCTCCAGCAAGTTC+TGG + chr3_1:61900451-61900470 None:intergenic 60.0%
GCCTCCACAAGTGCTTCGTG+AGG - chr3_1:61900486-61900505 Msa0366890:intron 60.0%
! CCCTCACGAAGCACTTGTGG+AGG + chr3_1:61900490-61900509 None:intergenic 60.0%
! GTGCCCTCACGAAGCACTTG+TGG + chr3_1:61900493-61900512 None:intergenic 60.0%
! TCGTGTTGGCCGTAGGACTG+CGG - chr3_1:61901796-61901815 Msa0366890:intron 60.0%
ATGTCCCTCCCGCAGTCCTA+CGG + chr3_1:61901808-61901827 None:intergenic 60.0%
! CGTGTTGGCCGTAGGACTGC+GGG - chr3_1:61901797-61901816 Msa0366890:intron 65.0%
TTGGCCGTAGGACTGCGGGA+GGG - chr3_1:61901801-61901820 Msa0366890:intron 65.0%
GTTGGCCGTAGGACTGCGGG+AGG - chr3_1:61901800-61901819 Msa0366890:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 61897822 61902058 61897822 ID=Msa0366890;Name=Msa0366890
chr3_1 mRNA 61897822 61902058 61897822 ID=Msa0366890-mRNA-1;Parent=Msa0366890;Name=Msa0366890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=146|1|1|1|0.88|0.9|10|229|270
chr3_1 exon 61897822 61898131 61897822 ID=Msa0366890-mRNA-1:exon:12058;Parent=Msa0366890-mRNA-1
chr3_1 exon 61898696 61898781 61898696 ID=Msa0366890-mRNA-1:exon:12057;Parent=Msa0366890-mRNA-1
chr3_1 exon 61898868 61899010 61898868 ID=Msa0366890-mRNA-1:exon:12056;Parent=Msa0366890-mRNA-1
chr3_1 exon 61899326 61899471 61899326 ID=Msa0366890-mRNA-1:exon:12055;Parent=Msa0366890-mRNA-1
chr3_1 exon 61900015 61900103 61900015 ID=Msa0366890-mRNA-1:exon:12054;Parent=Msa0366890-mRNA-1
chr3_1 exon 61900195 61900252 61900195 ID=Msa0366890-mRNA-1:exon:12053;Parent=Msa0366890-mRNA-1
chr3_1 exon 61900389 61900444 61900389 ID=Msa0366890-mRNA-1:exon:12052;Parent=Msa0366890-mRNA-1
chr3_1 exon 61900576 61900684 61900576 ID=Msa0366890-mRNA-1:exon:12051;Parent=Msa0366890-mRNA-1
chr3_1 exon 61900921 61900977 61900921 ID=Msa0366890-mRNA-1:exon:12050;Parent=Msa0366890-mRNA-1
chr3_1 exon 61901925 61902058 61901925 ID=Msa0366890-mRNA-1:exon:12049;Parent=Msa0366890-mRNA-1
chr3_1 five_prime_UTR 61901925 61902058 61901925 ID=Msa0366890-mRNA-1:five_prime_utr;Parent=Msa0366890-mRNA-1
chr3_1 five_prime_UTR 61900966 61900977 61900966 ID=Msa0366890-mRNA-1:five_prime_utr;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61900921 61900965 61900921 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61900576 61900684 61900576 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61900389 61900444 61900389 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61900195 61900252 61900195 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61900015 61900103 61900015 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61899326 61899471 61899326 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61898868 61899010 61898868 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61898696 61898781 61898696 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 CDS 61898051 61898131 61898051 ID=Msa0366890-mRNA-1:cds;Parent=Msa0366890-mRNA-1
chr3_1 three_prime_UTR 61897822 61898050 61897822 ID=Msa0366890-mRNA-1:three_prime_utr;Parent=Msa0366890-mRNA-1
Gene Sequence

>Msa0366890

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCGGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>Msa0366890

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT*