AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691900 MtrunA17_Chr4g0041801 100.000 220 0 0 1 220 258 477 4.18e-162 456
Msa0691900 MtrunA17_Chr2g0319621 72.646 223 58 1 1 220 202 424 8.78e-122 352
Msa0691900 MtrunA17_Chr5g0425571 32.683 205 97 9 33 218 202 384 4.97e-21 90.1
Msa0691900 MtrunA17_Chr3g0120271 32.243 214 105 8 16 213 161 350 3.97e-19 84.3
Msa0691900 MtrunA17_Chr4g0050511 34.000 200 99 10 33 218 202 382 1.13e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691900 AT4G27080.1 70.136 221 63 1 3 220 260 480 6.72e-110 324
Msa0691900 AT4G27080.2 70.136 221 63 1 3 220 312 532 3.01e-109 324
Msa0691900 AT3G20560.1 65.333 225 72 2 1 219 258 482 2.15e-103 307
Msa0691900 AT1G50950.1 64.444 225 74 2 1 219 259 483 4.63e-100 299
Msa0691900 AT1G50950.2 64.444 225 74 2 1 219 264 488 7.08e-100 298
Msa0691900 AT1G36050.2 30.732 205 101 6 33 218 202 384 2.53e-21 91.3
Msa0691900 AT1G36050.1 29.648 199 100 5 33 213 202 378 8.39e-20 87.4
Msa0691900 AT1G22200.1 30.622 209 96 10 33 218 202 384 8.24e-18 81.3
Msa0691900 AT3G22290.2 29.858 211 113 8 16 213 160 348 1.26e-15 75.1
Msa0691900 AT3G22290.1 29.858 211 113 8 16 213 160 348 1.26e-15 75.1

Find 82 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTAACCATCTATCTTT+TGG 0.216583 4_4:+60225599 Msa0691900:CDS
TGGAAACTATTTCTGTATTA+TGG 0.226931 4_4:+60224481 Msa0691900:five_prime_UTR
GCTAAGTTGGTGAAATTATC+AGG 0.267430 4_4:+60224576 Msa0691900:five_prime_UTR
TGTATCACGGTCTCCGTAAT+AGG 0.280950 4_4:-60224892 None:intergenic
ATTCATCAACACTCGTGATT+TGG 0.307736 4_4:+60225709 Msa0691900:CDS
TCCAACATGGCGCAGAATTC+AGG 0.327900 4_4:-60224770 None:intergenic
TCCATGGTCGCTTCTGAAAT+AGG 0.328292 4_4:-60224853 None:intergenic
CAATGGAGCGATGGAAAATA+TGG 0.331545 4_4:-60227427 None:intergenic
GCTGAGACAACCAAGCTTCC+TGG 0.341648 4_4:-60225527 None:intergenic
AATCACAGTTTACAAGGATA+AGG 0.360978 4_4:+60227342 Msa0691900:three_prime_UTR
TTTAGGACATTGCAGGTTCC+AGG 0.361213 4_4:+60225509 Msa0691900:intron
ACTGAACTGATAAGGTATAT+TGG 0.369229 4_4:+60227384 Msa0691900:three_prime_UTR
TCAAACAAATATGATTGAAT+AGG 0.395068 4_4:-60224721 None:intergenic
CAAATGTCTGTGCTATCATT+GGG 0.396338 4_4:+60226980 Msa0691900:CDS
GGGATATGTGCGTGTGAAAA+AGG 0.396887 4_4:+60225150 Msa0691900:CDS
ACAAATGTCTGTGCTATCAT+TGG 0.398122 4_4:+60226979 Msa0691900:CDS
GATTCTGCATAACACCATTA+AGG 0.403888 4_4:+60227141 Msa0691900:CDS
TCTATATTCAGCTGATCTAC+TGG 0.403970 4_4:-60224517 None:intergenic
TCATGGTTGATACCTAAGTA+TGG 0.407163 4_4:-60225668 None:intergenic
ATCACAGTTTACAAGGATAA+GGG 0.410850 4_4:+60227343 Msa0691900:three_prime_UTR
GCAGACCATGGAGACTTTAG+TGG 0.419781 4_4:+60225033 Msa0691900:intron
GCAGATAGAGCATTATATTC+AGG 0.426035 4_4:+60226689 Msa0691900:intron
TTCCATGTTCTGACCTGCAT+GGG 0.432835 4_4:-60226837 None:intergenic
GTTCTCTCCTATGTATATAG+AGG 0.433241 4_4:+60224688 Msa0691900:five_prime_UTR
CATGAACATGAGTCCTATTA+CGG 0.436547 4_4:+60224879 Msa0691900:five_prime_UTR
AGGATCTCAACATCTAGCTT+TGG 0.462268 4_4:+60225069 Msa0691900:CDS
TGCGCCATGTTGGAGGTGAC+TGG 0.463648 4_4:+60224779 Msa0691900:five_prime_UTR
TAGTTTCCACAAAATGCTAT+AGG 0.464680 4_4:-60224467 None:intergenic
AAAAGACCAGCACCGTCAAC+CGG 0.469907 4_4:+60225112 Msa0691900:CDS
CATAATGCACTGAACTGATA+AGG 0.471018 4_4:+60227376 Msa0691900:three_prime_UTR
TCAAGATGGAACCTTGCAAC+AGG 0.472576 4_4:-60226807 None:intergenic
ATCTCAACATCTAGCTTTGG+AGG 0.473111 4_4:+60225072 Msa0691900:CDS
CATCCACCGGTTGACGGTGC+TGG 0.479947 4_4:-60225118 None:intergenic
ATTGCAGGTTCCAGGAAGCT+TGG 0.490669 4_4:+60225517 Msa0691900:intron
ACTCTACATCCACCGGTTGA+CGG 0.501244 4_4:-60225124 None:intergenic
ATCAACCATGACAGGCTGAA+TGG 0.501401 4_4:+60225680 Msa0691900:CDS
TTAGTGGCATCTCTCCCAAC+AGG 0.504049 4_4:+60225049 Msa0691900:CDS
ACTGGTAAGTAAAGCTAAGT+TGG 0.505600 4_4:+60224563 Msa0691900:five_prime_UTR
CTAGATGTTGAGATCCTGTT+GGG 0.506394 4_4:-60225063 None:intergenic
ACCGGTGGATGTAGAGTTGA+GGG 0.507516 4_4:+60225130 Msa0691900:CDS
ACAGAGGTAATAACCAGAAA+AGG 0.508756 4_4:+60226720 Msa0691900:CDS
TCAACCATGACAGGCTGAAT+GGG 0.513586 4_4:+60225681 Msa0691900:CDS
TGAATTCTGCGCCATGTTGG+AGG 0.514621 4_4:+60224772 Msa0691900:five_prime_UTR
CCAATGCTTCACATCAATCA+TGG 0.522347 4_4:-60225642 None:intergenic
CTTCCATGTTCTGACCTGCA+TGG 0.529587 4_4:-60226838 None:intergenic
AATGATAATCACAGTTTACA+AGG 0.535320 4_4:+60227336 Msa0691900:three_prime_UTR
CTATATTCAGCTGATCTACT+GGG 0.537794 4_4:-60224516 None:intergenic
TCCATGTTCTGACCTGCATG+GGG 0.543102 4_4:-60226836 None:intergenic
GAAAATATGGACTTGACGTA+CGG 0.547160 4_4:-60227414 None:intergenic
TCCTATTTCAGAAGCGACCA+TGG 0.550761 4_4:+60224852 Msa0691900:five_prime_UTR
CCATGATTGATGTGAAGCAT+TGG 0.553335 4_4:+60225642 Msa0691900:CDS
AGTATCGATGACTAATGTAC+TGG 0.554551 4_4:+60224545 Msa0691900:five_prime_UTR
ATCAACACTCGTGATTTGGA+AGG 0.563638 4_4:+60225713 Msa0691900:CDS
TCCTGAATTCTGCGCCATGT+TGG 0.564881 4_4:+60224769 Msa0691900:five_prime_UTR
GTGTGAACATTCCTGTTGCA+AGG 0.569493 4_4:+60226796 Msa0691900:CDS
AAGCATTGGATACCATACTT+AGG 0.572826 4_4:+60225656 Msa0691900:CDS
TCCCTCAACTCTACATCCAC+CGG 0.573867 4_4:-60225131 None:intergenic
AAATATTGTGAACCTTGACT+AGG 0.573961 4_4:-60224920 None:intergenic
ACTACATAACTCCCAAGGAC+GGG 0.580701 4_4:-60227248 None:intergenic
TGACTAGGCTTTCTGTATCA+CGG 0.584070 4_4:-60224905 None:intergenic
AGATGCCACTAAAGTCTCCA+TGG 0.585098 4_4:-60225038 None:intergenic
AACCGGTGGATGTAGAGTTG+AGG 0.592968 4_4:+60225129 Msa0691900:CDS
TCAACACTCGTGATTTGGAA+GGG 0.594262 4_4:+60225714 Msa0691900:CDS
ACCGCCCATTCAGCCTGTCA+TGG 0.594697 4_4:-60225685 None:intergenic
GCTAGATGTTGAGATCCTGT+TGG 0.602754 4_4:-60225064 None:intergenic
TTCACATCAATCATGGCTCT+AGG 0.606261 4_4:-60225635 None:intergenic
ACTTAGGTATCAACCATGAC+AGG 0.611601 4_4:+60225672 Msa0691900:CDS
ACTCATGTTCATGATGTCCA+TGG 0.615389 4_4:-60224869 None:intergenic
TACTACATAACTCCCAAGGA+CGG 0.619410 4_4:-60227249 None:intergenic
GCTTTGGAGGATAAATCCAA+TGG 0.620054 4_4:+60225085 Msa0691900:CDS
ATTCATTGAGACGCTCAAAG+TGG 0.631747 4_4:-60224625 None:intergenic
AGACCAGCACCGTCAACCGG+TGG 0.636144 4_4:+60225115 Msa0691900:CDS
AAATCCAGTCACCTCCAACA+TGG 0.638444 4_4:-60224783 None:intergenic
ACCATGACAGGCTGAATGGG+CGG 0.638627 4_4:+60225684 Msa0691900:CDS
TGATACAGAAAGCCTAGTCA+AGG 0.642495 4_4:+60224908 Msa0691900:five_prime_UTR
AAAGTACTACATAACTCCCA+AGG 0.652371 4_4:-60227253 None:intergenic
AAATGTCTGTGCTATCATTG+GGG 0.655622 4_4:+60226981 Msa0691900:CDS
TATTCAGGTAGTTAAAACAG+AGG 0.665097 4_4:+60226704 Msa0691900:CDS
TGTTATGCAGAATCGAGTCA+AGG 0.668290 4_4:-60227132 None:intergenic
CCATGTTCTGACCTGCATGG+GGG 0.709394 4_4:-60226835 None:intergenic
AATGTCTGTGCTATCATTGG+GGG 0.711828 4_4:+60226982 Msa0691900:CDS
GTACACAGCACACAGCAGTG+TGG 0.773884 4_4:+60226767 Msa0691900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATTATATTGAAAATCT+AGG - chr4_4:60225471-60225490 None:intergenic 15.0%
!! GAAAGAAATATAAAATGTTT+AGG + chr4_4:60225492-60225511 Msa0691900:intron 15.0%
!! AGATAAAAATAAACATGATT+GGG - chr4_4:60226604-60226623 None:intergenic 15.0%
!! TAGATTATTGTATTATAACA+TGG - chr4_4:60226659-60226678 None:intergenic 15.0%
!! ACTGAAAAAGAATATAAAAC+TGG + chr4_4:60224438-60224457 Msa0691900:five_prime_UTR 20.0%
!! TCAAACAAATATGATTGAAT+AGG - chr4_4:60224724-60224743 None:intergenic 20.0%
!!! AAGAGTTTTTCTAAAACATA+AGG - chr4_4:60225203-60225222 None:intergenic 20.0%
!!! TGAAGTGTCTATTTTTTAAA+TGG - chr4_4:60225358-60225377 None:intergenic 20.0%
!! AAATTCACTGAAAAAGAATA+GGG + chr4_4:60225421-60225440 Msa0691900:intron 20.0%
!! TATTATATTGAAAATCTAGG+AGG - chr4_4:60225468-60225487 None:intergenic 20.0%
!!! TTTTTGCTTATATTTAAGTC+TGG - chr4_4:60226269-60226288 None:intergenic 20.0%
!! GATAAAAATAAACATGATTG+GGG - chr4_4:60226603-60226622 None:intergenic 20.0%
!! CAGATAAAAATAAACATGAT+TGG - chr4_4:60226605-60226624 None:intergenic 20.0%
!!! GATTAATTTATAACCTTTTC+TGG - chr4_4:60226736-60226755 None:intergenic 20.0%
!! TCATGGTTCAAATATATATA+CGG + chr4_4:60226861-60226880 Msa0691900:intron 20.0%
!!! AATTTTTTTCATTGCCTTAA+TGG - chr4_4:60227158-60227177 None:intergenic 20.0%
!!! TATTCTTTTTCAGTCAATAG+CGG - chr4_4:60224432-60224451 None:intergenic 25.0%
!!! TGGAAACTATTTCTGTATTA+TGG + chr4_4:60224481-60224500 Msa0691900:five_prime_UTR 25.0%
! TGAAAAACCTCTATATACAT+AGG - chr4_4:60224698-60224717 None:intergenic 25.0%
!!! GATTTCTGATTTTTTGCATT+CGG + chr4_4:60224801-60224820 Msa0691900:five_prime_UTR 25.0%
!! AATTTAACTTTACAGTAGAC+TGG + chr4_4:60224970-60224989 Msa0691900:intron 25.0%
!!! TTTCTAAAACATAAGGTTGA+AGG - chr4_4:60225196-60225215 None:intergenic 25.0%
! TCTGTTAATACTAAAATCAC+TGG + chr4_4:60225378-60225397 Msa0691900:intron 25.0%
!!! CTATTCTTTTTCAGTGAATT+TGG - chr4_4:60225422-60225441 None:intergenic 25.0%
! CAAATTCACTGAAAAAGAAT+AGG + chr4_4:60225420-60225439 Msa0691900:intron 25.0%
! AATTCACTGAAAAAGAATAG+GGG + chr4_4:60225422-60225441 Msa0691900:intron 25.0%
!!! CTTTTTTTCCAAAAGATAGA+TGG - chr4_4:60225610-60225629 None:intergenic 25.0%
!!! TGTTGGATTGCATATTTTTA+CGG + chr4_4:60225826-60225845 Msa0691900:intron 25.0%
! AATAGAACAAAAACTTCATC+AGG - chr4_4:60225915-60225934 None:intergenic 25.0%
!!! AGATGAGATAGATAGTTTTT+TGG - chr4_4:60226044-60226063 None:intergenic 25.0%
! AAAAAACTATCTATCTCATC+TGG + chr4_4:60226043-60226062 Msa0691900:intron 25.0%
!! TTTTGGTACAAATTACAATG+TGG + chr4_4:60226073-60226092 Msa0691900:intron 25.0%
!! CTATAAATGTCCAATGTTTT+CGG + chr4_4:60226380-60226399 Msa0691900:intron 25.0%
! ATAATAATGACCGAAAACAT+TGG - chr4_4:60226393-60226412 None:intergenic 25.0%
!!! CATGTTTATTTTTATCTGTG+TGG + chr4_4:60226607-60226626 Msa0691900:intron 25.0%
!!! ACAATGTATGTTTTGTTATC+AGG + chr4_4:60226915-60226934 Msa0691900:intron 25.0%
! TAAAATGTGAAAAAGACTTC+TGG - chr4_4:60226957-60226976 None:intergenic 25.0%
!!! AGTCTATTTTTTGTGATTTC+AGG + chr4_4:60227099-60227118 Msa0691900:intron 25.0%
! GCAATGAAAAAAATTGAGAT+TGG + chr4_4:60227163-60227182 Msa0691900:CDS 25.0%
! AATGATAATCACAGTTTACA+AGG + chr4_4:60227336-60227355 Msa0691900:three_prime_UTR 25.0%
! TGTATTCCTATAGCATTTTG+TGG + chr4_4:60224461-60224480 Msa0691900:five_prime_UTR 30.0%
TAGTTTCCACAAAATGCTAT+AGG - chr4_4:60224470-60224489 None:intergenic 30.0%
!! GTCGATTCTTTTATAATGAC+TGG + chr4_4:60224666-60224685 Msa0691900:five_prime_UTR 30.0%
AAATATTGTGAACCTTGACT+AGG - chr4_4:60224923-60224942 None:intergenic 30.0%
GAAGTCAGGTTAAATTACAT+GGG - chr4_4:60225006-60225025 None:intergenic 30.0%
AGAAGTCAGGTTAAATTACA+TGG - chr4_4:60225007-60225026 None:intergenic 30.0%
TTGATGTGACTTGAATTAAG+TGG + chr4_4:60225238-60225257 Msa0691900:intron 30.0%
! TAAAATGTTTAGGACATTGC+AGG + chr4_4:60225502-60225521 Msa0691900:intron 30.0%
! GTCATTAACCATCTATCTTT+TGG + chr4_4:60225599-60225618 Msa0691900:CDS 30.0%
CTTCACTATTGGAATTTGTA+TGG + chr4_4:60225792-60225811 Msa0691900:intron 30.0%
!! GTTGGATTGCATATTTTTAC+GGG + chr4_4:60225827-60225846 Msa0691900:intron 30.0%
!! TTGCATATTTTTACGGGATA+AGG + chr4_4:60225833-60225852 Msa0691900:intron 30.0%
CAGTTTCTTAATCTTGCAAA+TGG - chr4_4:60225870-60225889 None:intergenic 30.0%
GGCATTATAGAATGAAAGAA+AGG - chr4_4:60225947-60225966 None:intergenic 30.0%
! TCTCATCTGGAAAATCATTT+TGG + chr4_4:60226056-60226075 Msa0691900:intron 30.0%
ACTTCACTAAGCATAAACAT+GGG + chr4_4:60226182-60226201 Msa0691900:intron 30.0%
! ACACGTTTAAAATTCTAACG+TGG - chr4_4:60226224-60226243 None:intergenic 30.0%
GACTTAAATGTACATGTACT+TGG - chr4_4:60226319-60226338 None:intergenic 30.0%
!! GCATATTGATTTCTTTCAGT+AGG - chr4_4:60226463-60226482 None:intergenic 30.0%
TGAAAGAAATCAATATGCAG+TGG + chr4_4:60226465-60226484 Msa0691900:intron 30.0%
TATTCAGGTAGTTAAAACAG+AGG + chr4_4:60226704-60226723 Msa0691900:CDS 30.0%
! GGCAAGAATTTTTGATAGAT+AGG + chr4_4:60227184-60227203 Msa0691900:exon 30.0%
AATCACAGTTTACAAGGATA+AGG + chr4_4:60227342-60227361 Msa0691900:three_prime_UTR 30.0%
ATCACAGTTTACAAGGATAA+GGG + chr4_4:60227343-60227362 Msa0691900:three_prime_UTR 30.0%
ACTGAACTGATAAGGTATAT+TGG + chr4_4:60227384-60227403 Msa0691900:three_prime_UTR 30.0%
CTATATTCAGCTGATCTACT+GGG - chr4_4:60224519-60224538 None:intergenic 35.0%
TCTATATTCAGCTGATCTAC+TGG - chr4_4:60224520-60224539 None:intergenic 35.0%
!! AGTATCGATGACTAATGTAC+TGG + chr4_4:60224545-60224564 Msa0691900:five_prime_UTR 35.0%
ACTGGTAAGTAAAGCTAAGT+TGG + chr4_4:60224563-60224582 Msa0691900:five_prime_UTR 35.0%
!! GCTAAGTTGGTGAAATTATC+AGG + chr4_4:60224576-60224595 Msa0691900:five_prime_UTR 35.0%
GTTCTCTCCTATGTATATAG+AGG + chr4_4:60224688-60224707 Msa0691900:five_prime_UTR 35.0%
CATGAACATGAGTCCTATTA+CGG + chr4_4:60224879-60224898 Msa0691900:five_prime_UTR 35.0%
!! TAAGTGGTCTTATATTTCGC+TGG + chr4_4:60225254-60225273 Msa0691900:intron 35.0%
ATAGGGGAAGTAACATTTCT+AGG + chr4_4:60225438-60225457 Msa0691900:intron 35.0%
!! AAGCATTGGATACCATACTT+AGG + chr4_4:60225656-60225675 Msa0691900:CDS 35.0%
! TCATGGTTGATACCTAAGTA+TGG - chr4_4:60225671-60225690 None:intergenic 35.0%
ATTCATCAACACTCGTGATT+TGG + chr4_4:60225709-60225728 Msa0691900:CDS 35.0%
GTATGGTTGCTATAGAATGT+TGG + chr4_4:60225809-60225828 Msa0691900:intron 35.0%
CACTCAAACCATCATAAACT+CGG + chr4_4:60225978-60225997 Msa0691900:intron 35.0%
AAACCATCATAAACTCGGTT+GGG + chr4_4:60225983-60226002 Msa0691900:intron 35.0%
GTTAAAGAGAAGGACCATTA+AGG - chr4_4:60226009-60226028 None:intergenic 35.0%
!!! AGTTTTTTGGCTGATTGACA+GGG - chr4_4:60226031-60226050 None:intergenic 35.0%
!!! TAGTTTTTTGGCTGATTGAC+AGG - chr4_4:60226032-60226051 None:intergenic 35.0%
TTGAGGAACTTGACAACATA+GGG - chr4_4:60226147-60226166 None:intergenic 35.0%
CACTTCACTAAGCATAAACA+TGG + chr4_4:60226181-60226200 Msa0691900:intron 35.0%
ACATGTACATTTAAGTCCAG+AGG + chr4_4:60226322-60226341 Msa0691900:intron 35.0%
CATGTACATTTAAGTCCAGA+GGG + chr4_4:60226323-60226342 Msa0691900:intron 35.0%
GTTGTATTGTGTTATCTCAG+TGG - chr4_4:60226549-60226568 None:intergenic 35.0%
! GCAGATAGAGCATTATATTC+AGG + chr4_4:60226689-60226708 Msa0691900:intron 35.0%
ACAGAGGTAATAACCAGAAA+AGG + chr4_4:60226720-60226739 Msa0691900:CDS 35.0%
ACAAATGTCTGTGCTATCAT+TGG + chr4_4:60226979-60226998 Msa0691900:CDS 35.0%
CAAATGTCTGTGCTATCATT+GGG + chr4_4:60226980-60226999 Msa0691900:CDS 35.0%
AAATGTCTGTGCTATCATTG+GGG + chr4_4:60226981-60227000 Msa0691900:CDS 35.0%
!! TTTTTGTGATTTCAGGTAGC+TGG + chr4_4:60227106-60227125 Msa0691900:intron 35.0%
GATTCTGCATAACACCATTA+AGG + chr4_4:60227141-60227160 Msa0691900:CDS 35.0%
!! ATTTTGTTATAACCCGTCCT+TGG + chr4_4:60227236-60227255 Msa0691900:three_prime_UTR 35.0%
!! TTTTGTTATAACCCGTCCTT+GGG + chr4_4:60227237-60227256 Msa0691900:three_prime_UTR 35.0%
! AAAGTACTACATAACTCCCA+AGG - chr4_4:60227256-60227275 None:intergenic 35.0%
CATAATGCACTGAACTGATA+AGG + chr4_4:60227376-60227395 Msa0691900:three_prime_UTR 35.0%
GAAAATATGGACTTGACGTA+CGG - chr4_4:60227417-60227436 None:intergenic 35.0%
ATTCATTGAGACGCTCAAAG+TGG - chr4_4:60224628-60224647 None:intergenic 40.0%
ACTCATGTTCATGATGTCCA+TGG - chr4_4:60224872-60224891 None:intergenic 40.0%
TGACTAGGCTTTCTGTATCA+CGG - chr4_4:60224908-60224927 None:intergenic 40.0%
TGATACAGAAAGCCTAGTCA+AGG + chr4_4:60224908-60224927 Msa0691900:five_prime_UTR 40.0%
CTAGATGTTGAGATCCTGTT+GGG - chr4_4:60225066-60225085 None:intergenic 40.0%
! AGGATCTCAACATCTAGCTT+TGG + chr4_4:60225069-60225088 Msa0691900:CDS 40.0%
!! ATCTCAACATCTAGCTTTGG+AGG + chr4_4:60225072-60225091 Msa0691900:CDS 40.0%
!! GCTTTGGAGGATAAATCCAA+TGG + chr4_4:60225085-60225104 Msa0691900:CDS 40.0%
!!! TGCTGGTCTTTTTGTTCCAT+TGG - chr4_4:60225104-60225123 None:intergenic 40.0%
GCGTGTGAAAAAGGTAAACT+CGG + chr4_4:60225159-60225178 Msa0691900:intron 40.0%
TTCACATCAATCATGGCTCT+AGG - chr4_4:60225638-60225657 None:intergenic 40.0%
CCAATGCTTCACATCAATCA+TGG - chr4_4:60225645-60225664 None:intergenic 40.0%
CCATGATTGATGTGAAGCAT+TGG + chr4_4:60225642-60225661 Msa0691900:CDS 40.0%
ACTTAGGTATCAACCATGAC+AGG + chr4_4:60225672-60225691 Msa0691900:CDS 40.0%
! ATCAACACTCGTGATTTGGA+AGG + chr4_4:60225713-60225732 Msa0691900:CDS 40.0%
! TCAACACTCGTGATTTGGAA+GGG + chr4_4:60225714-60225733 Msa0691900:CDS 40.0%
CTCAGTGCAAACTTCACTAT+TGG + chr4_4:60225781-60225800 Msa0691900:intron 40.0%
ACAAAAACTTCATCAGGCTC+TGG - chr4_4:60225909-60225928 None:intergenic 40.0%
ATGATGGTTTGAGTGGTACA+CGG - chr4_4:60225973-60225992 None:intergenic 40.0%
CGAGTTTATGATGGTTTGAG+TGG - chr4_4:60225980-60225999 None:intergenic 40.0%
CAAACCATCATAAACTCGGT+TGG + chr4_4:60225982-60226001 Msa0691900:intron 40.0%
GATTGACAGGGTTAAAGAGA+AGG - chr4_4:60226019-60226038 None:intergenic 40.0%
GTTGAGGAACTTGACAACAT+AGG - chr4_4:60226148-60226167 None:intergenic 40.0%
CTTCAAGAAAATACTCCCTC+TGG - chr4_4:60226341-60226360 None:intergenic 40.0%
GTGCTTCAGAAAGACATTAG+GGG - chr4_4:60226425-60226444 None:intergenic 40.0%
GGTGCTTCAGAAAGACATTA+GGG - chr4_4:60226426-60226445 None:intergenic 40.0%
AATGTCTGTGCTATCATTGG+GGG + chr4_4:60226982-60227001 Msa0691900:CDS 40.0%
!!! TATCATTGGGGGTGTTTTCA+CGG + chr4_4:60226993-60227012 Msa0691900:CDS 40.0%
TGTTATGCAGAATCGAGTCA+AGG - chr4_4:60227135-60227154 None:intergenic 40.0%
TACTACATAACTCCCAAGGA+CGG - chr4_4:60227252-60227271 None:intergenic 40.0%
AAATCCAGTCACCTCCAACA+TGG - chr4_4:60224786-60224805 None:intergenic 45.0%
TCCTATTTCAGAAGCGACCA+TGG + chr4_4:60224852-60224871 Msa0691900:five_prime_UTR 45.0%
!! TCCATGGTCGCTTCTGAAAT+AGG - chr4_4:60224856-60224875 None:intergenic 45.0%
TGTATCACGGTCTCCGTAAT+AGG - chr4_4:60224895-60224914 None:intergenic 45.0%
AAGTCTCCATGGTCTGCAAA+CGG - chr4_4:60225030-60225049 None:intergenic 45.0%
AGATGCCACTAAAGTCTCCA+TGG - chr4_4:60225041-60225060 None:intergenic 45.0%
GCTAGATGTTGAGATCCTGT+TGG - chr4_4:60225067-60225086 None:intergenic 45.0%
GGGATATGTGCGTGTGAAAA+AGG + chr4_4:60225150-60225169 Msa0691900:CDS 45.0%
! TTTAGGACATTGCAGGTTCC+AGG + chr4_4:60225509-60225528 Msa0691900:intron 45.0%
ATCAACCATGACAGGCTGAA+TGG + chr4_4:60225680-60225699 Msa0691900:CDS 45.0%
TCAACCATGACAGGCTGAAT+GGG + chr4_4:60225681-60225700 Msa0691900:CDS 45.0%
TAAACTCGGTTGGGCCTTAA+TGG + chr4_4:60225992-60226011 Msa0691900:intron 45.0%
GTGAAAGAGTGAAGCAGTTG+AGG - chr4_4:60226164-60226183 None:intergenic 45.0%
GGGTGCTTCAGAAAGACATT+AGG - chr4_4:60226427-60226446 None:intergenic 45.0%
CTTTCAGTAGGTTGTCTCCT+TGG - chr4_4:60226451-60226470 None:intergenic 45.0%
GTGTGAACATTCCTGTTGCA+AGG + chr4_4:60226796-60226815 Msa0691900:CDS 45.0%
TCAAGATGGAACCTTGCAAC+AGG - chr4_4:60226810-60226829 None:intergenic 45.0%
TTCCATGTTCTGACCTGCAT+GGG - chr4_4:60226840-60226859 None:intergenic 45.0%
AGGTCAGAACATGGAAGTCA+TGG + chr4_4:60226844-60226863 Msa0691900:intron 45.0%
ACTACATAACTCCCAAGGAC+GGG - chr4_4:60227251-60227270 None:intergenic 45.0%
!! ACAAAAAAAAAAAAAAAAAA+AGG - chr4_4:60227060-60227079 None:intergenic 5.0%
TCCTGAATTCTGCGCCATGT+TGG + chr4_4:60224769-60224788 Msa0691900:five_prime_UTR 50.0%
TCCAACATGGCGCAGAATTC+AGG - chr4_4:60224773-60224792 None:intergenic 50.0%
TGAATTCTGCGCCATGTTGG+AGG + chr4_4:60224772-60224791 Msa0691900:five_prime_UTR 50.0%
ACTTCTCCGTTTGCAGACCA+TGG + chr4_4:60225021-60225040 Msa0691900:intron 50.0%
GCAGACCATGGAGACTTTAG+TGG + chr4_4:60225033-60225052 Msa0691900:intron 50.0%
TTAGTGGCATCTCTCCCAAC+AGG + chr4_4:60225049-60225068 Msa0691900:CDS 50.0%
AAAAGACCAGCACCGTCAAC+CGG + chr4_4:60225112-60225131 Msa0691900:CDS 50.0%
! ACTCTACATCCACCGGTTGA+CGG - chr4_4:60225127-60225146 None:intergenic 50.0%
AACCGGTGGATGTAGAGTTG+AGG + chr4_4:60225129-60225148 Msa0691900:CDS 50.0%
ACCGGTGGATGTAGAGTTGA+GGG + chr4_4:60225130-60225149 Msa0691900:CDS 50.0%
TCCCTCAACTCTACATCCAC+CGG - chr4_4:60225134-60225153 None:intergenic 50.0%
ATTGCAGGTTCCAGGAAGCT+TGG + chr4_4:60225517-60225536 Msa0691900:intron 50.0%
GGTTTGAGTGGTACACGGTA+AGG - chr4_4:60225968-60225987 None:intergenic 50.0%
AGGCCCAACCGAGTTTATGA+TGG - chr4_4:60225989-60226008 None:intergenic 50.0%
!! TCTTTCTGAAGCACCCACCA+AGG + chr4_4:60226431-60226450 Msa0691900:intron 50.0%
CAGTAGGTTGTCTCCTTGGT+GGG - chr4_4:60226447-60226466 None:intergenic 50.0%
TCAGTAGGTTGTCTCCTTGG+TGG - chr4_4:60226448-60226467 None:intergenic 50.0%
TCCATGTTCTGACCTGCATG+GGG - chr4_4:60226839-60226858 None:intergenic 50.0%
CTTCCATGTTCTGACCTGCA+TGG - chr4_4:60226841-60226860 None:intergenic 50.0%
GGTCTGCAAACGGAGAAGTC+AGG - chr4_4:60225020-60225039 None:intergenic 55.0%
GCTGAGACAACCAAGCTTCC+TGG - chr4_4:60225530-60225549 None:intergenic 55.0%
ACCATGACAGGCTGAATGGG+CGG + chr4_4:60225684-60225703 Msa0691900:CDS 55.0%
GTACACAGCACACAGCAGTG+TGG + chr4_4:60226767-60226786 Msa0691900:CDS 55.0%
CCATGTTCTGACCTGCATGG+GGG - chr4_4:60226838-60226857 None:intergenic 55.0%
TGCGCCATGTTGGAGGTGAC+TGG + chr4_4:60224779-60224798 Msa0691900:five_prime_UTR 60.0%
ACCGCCCATTCAGCCTGTCA+TGG - chr4_4:60225688-60225707 None:intergenic 60.0%
GCATGGGGGAGAGCTCAAGA+TGG - chr4_4:60226824-60226843 None:intergenic 60.0%
TCTTGAGCTCTCCCCCATGC+AGG + chr4_4:60226824-60226843 Msa0691900:CDS 60.0%
CCCCCATGCAGGTCAGAACA+TGG + chr4_4:60226835-60226854 Msa0691900:intron 60.0%
AGACCAGCACCGTCAACCGG+TGG + chr4_4:60225115-60225134 Msa0691900:CDS 65.0%
! CATCCACCGGTTGACGGTGC+TGG - chr4_4:60225121-60225140 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60224373 60227436 60224373 ID=Msa0691900;Name=Msa0691900
chr4_4 mRNA 60224373 60227436 60224373 ID=Msa0691900-mRNA-1;Parent=Msa0691900;Name=Msa0691900-mRNA-1;_AED=0.07;_eAED=0.07;_QI=560|1|1|1|1|1|6|238|220
chr4_4 exon 60224373 60224929 60224373 ID=Msa0691900-mRNA-1:exon:16426;Parent=Msa0691900-mRNA-1
chr4_4 exon 60225037 60225171 60225037 ID=Msa0691900-mRNA-1:exon:16427;Parent=Msa0691900-mRNA-1
chr4_4 exon 60225524 60225745 60225524 ID=Msa0691900-mRNA-1:exon:16428;Parent=Msa0691900-mRNA-1
chr4_4 exon 60226693 60226845 60226693 ID=Msa0691900-mRNA-1:exon:16429;Parent=Msa0691900-mRNA-1
chr4_4 exon 60226937 60227014 60226937 ID=Msa0691900-mRNA-1:exon:16430;Parent=Msa0691900-mRNA-1
chr4_4 exon 60227121 60227436 60227121 ID=Msa0691900-mRNA-1:exon:16431;Parent=Msa0691900-mRNA-1
chr4_4 five_prime_UTR 60224373 60224929 60224373 ID=Msa0691900-mRNA-1:five_prime_utr;Parent=Msa0691900-mRNA-1
chr4_4 five_prime_UTR 60225037 60225039 60225037 ID=Msa0691900-mRNA-1:five_prime_utr;Parent=Msa0691900-mRNA-1
chr4_4 CDS 60225040 60225171 60225040 ID=Msa0691900-mRNA-1:cds;Parent=Msa0691900-mRNA-1
chr4_4 CDS 60225524 60225745 60225524 ID=Msa0691900-mRNA-1:cds;Parent=Msa0691900-mRNA-1
chr4_4 CDS 60226693 60226845 60226693 ID=Msa0691900-mRNA-1:cds;Parent=Msa0691900-mRNA-1
chr4_4 CDS 60226937 60227014 60226937 ID=Msa0691900-mRNA-1:cds;Parent=Msa0691900-mRNA-1
chr4_4 CDS 60227121 60227198 60227121 ID=Msa0691900-mRNA-1:cds;Parent=Msa0691900-mRNA-1
chr4_4 three_prime_UTR 60227199 60227436 60227199 ID=Msa0691900-mRNA-1:three_prime_utr;Parent=Msa0691900-mRNA-1
Gene Sequence

>Msa0691900

ATGGAGACTTTAGTGGCATCTCTCCCAACAGGATCTCAACATCTAGCTTTGGAGGATAAATCCAATGGAACAAAAAGACCAGCACCGTCAACCGGTGGATGTAGAGTTGAGGGATATGTGCGTGTGAAAAAGGTTCCAGGAAGCTTGGTTGTCTCAGCTAGATCAGATGCACATTCATTTGATGCTTCTCAAATGAACATGTCACATGTCATTAACCATCTATCTTTTGGAAAAAAAGTGACACCTAGAGCCATGATTGATGTGAAGCATTGGATACCATACTTAGGTATCAACCATGACAGGCTGAATGGGCGGTCATTCATCAACACTCGTGATTTGGAAGGGAATGTTACTATAGAGCATTATATTCAGGTAGTTAAAACAGAGGTAATAACCAGAAAAGGTTATAAATTAATCGAAGAGTACGAGTACACAGCACACAGCAGTGTGGCACACAGTGTGAACATTCCTGTTGCAAGGTTCCATCTTGAGCTCTCCCCCATGCAGGTCTTAATAACAGAAAACCAGAAGTCTTTTTCACATTTTATTACAAATGTCTGTGCTATCATTGGGGGTGTTTTCACGGTAGCTGGAATCCTTGACTCGATTCTGCATAACACCATTAAGGCAATGAAAAAAATTGAGATTGGCAAGAATTTTTGA

Protein sequence

>Msa0691900

METLVASLPTGSQHLALEDKSNGTKRPAPSTGGCRVEGYVRVKKVPGSLVVSARSDAHSFDASQMNMSHVINHLSFGKKVTPRAMIDVKHWIPYLGINHDRLNGRSFINTRDLEGNVTIEHYIQVVKTEVITRKGYKLIEEYEYTAHSSVAHSVNIPVARFHLELSPMQVLITENQKSFSHFITNVCAIIGGVFTVAGILDSILHNTIKAMKKIEIGKNF*