AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0709500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709500 MtrunA17_Chr7g0266561 100.000 80 0 0 1 80 1 80 1.03e-53 161
Msa0709500 MtrunA17_Chr6g0477821 100.000 76 0 0 1 76 1 76 1.51e-50 153
Msa0709500 MtrunA17_Chr7g0240391 38.028 71 35 1 9 70 10 80 7.24e-13 58.5
Msa0709500 MtrunA17_Chr8g0351841 35.211 71 37 1 9 70 10 80 3.16e-11 54.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709500 AT2G23930.1 91.139 79 7 0 1 79 1 79 2.89e-49 150
Msa0709500 AT3G11500.2 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa0709500 AT3G11500.1 91.139 79 7 0 1 79 1 79 4.75e-49 149
Msa0709500 AT2G23930.2 88.679 53 6 0 27 79 1 53 1.70e-28 97.1
Msa0709500 AT2G03870.2 38.028 71 35 1 9 70 10 80 1.65e-12 57.8
Msa0709500 AT2G03870.1 38.028 71 35 1 9 70 10 80 1.65e-12 57.8

Find 41 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGACCAATTTATGAATT+TGG 0.200064 5_1:-673577 Msa0709500:CDS
CTAACTAATTCTCAGAAGTT+AGG 0.225810 5_1:-674697 None:intergenic
TGTGAGTGCTGGATGCATTT+AGG 0.243938 5_1:-673186 Msa0709500:three_prime_UTR
GTGAGTGCTGGATGCATTTA+GGG 0.270068 5_1:-673185 Msa0709500:three_prime_UTR
CAACAACCAAATTCATAAAT+TGG 0.293346 5_1:+673571 None:intergenic
TCGAAAATTGCAGCTGTTGA+TGG 0.308847 5_1:-673048 Msa0709500:three_prime_UTR
AATGCTTACTTCTTCAAATC+TGG 0.328903 5_1:+674584 None:intergenic
TTCTCAGAAGTTAGGGTTTG+TGG 0.351451 5_1:-674689 None:intergenic
AACGGAGAACGAAGATGATT+TGG 0.363843 5_1:+674640 None:intergenic
TCTGGTTGGTTTGTGAGTGC+TGG 0.367081 5_1:-673197 Msa0709500:three_prime_UTR
TGCAATTGTGGATTGTAATA+TGG 0.384204 5_1:-673249 Msa0709500:three_prime_UTR
TAACTAATTCTCAGAAGTTA+GGG 0.411179 5_1:-674696 None:intergenic
TCTTTCACCATGAGTAGGTC+AGG 0.413563 5_1:-674614 Msa0709500:exon
AATTAGATGCTTCTGTTCAC+TGG 0.418853 5_1:+673344 None:intergenic
ACATTTATAACTAAATTTCA+AGG 0.440241 5_1:-673307 Msa0709500:three_prime_UTR
AGGGTTGTAGTGGATGGTAA+TGG 0.465552 5_1:-673166 Msa0709500:three_prime_UTR
AAATGTGATTTCAACTAAAG+AGG 0.496559 5_1:+673116 None:intergenic
GCATTTAGGGTTGTAGTGGA+TGG 0.497190 5_1:-673172 Msa0709500:three_prime_UTR
ACAGAAACCGCTTAGATGCT+AGG 0.499392 5_1:-673279 Msa0709500:three_prime_UTR
AATGCAAATCGCATGATTGT+TGG 0.502115 5_1:-673612 Msa0709500:CDS
TCATAAATTGGTCGAAGCCA+CGG 0.529169 5_1:+673583 None:intergenic
GGAGAACGAAGATGATTTGG+AGG 0.530047 5_1:+674643 None:intergenic
CGCTTTCTGCAGGTGATCAG+AGG 0.541314 5_1:-673398 Msa0709500:intron
AACGAAGATGATTTGGAGGG+TGG 0.546349 5_1:+674647 None:intergenic
GGATGCATTTAGGGTTGTAG+TGG 0.555307 5_1:-673176 Msa0709500:three_prime_UTR
TTTGTTCTTTCACCATGAGT+AGG 0.559149 5_1:-674619 Msa0709500:exon
GACAATACTGTGGAGGTGAA+TGG 0.565835 5_1:-673549 Msa0709500:CDS
TGGCTGCCCTGACCTACTCA+TGG 0.567702 5_1:+674607 None:intergenic
ACTCATGGTGAAAGAACAAA+CGG 0.572630 5_1:+674622 None:intergenic
AAATAGTGTGGTCACTGTAG+AGG 0.581425 5_1:-673375 Msa0709500:CDS
CTAGGAGTAGAATGCAATTG+TGG 0.586469 5_1:-673261 Msa0709500:three_prime_UTR
CTTTCACCATGAGTAGGTCA+GGG 0.590203 5_1:-674613 Msa0709500:exon
GCTTACTTCTTCAAATCTGG+TGG 0.598528 5_1:+674587 None:intergenic
ATGATTGTTGGTACTCTCCG+TGG 0.628986 5_1:-673600 Msa0709500:CDS
TCATCTTAGCGAGAAATCTG+AGG 0.629688 5_1:-673226 Msa0709500:three_prime_UTR
TTCTACTCCTAGCATCTAAG+CGG 0.649009 5_1:+673272 None:intergenic
CATCTTAGCGAGAAATCTGA+GGG 0.651111 5_1:-673225 Msa0709500:three_prime_UTR
TTTGGTTGTTGACAATACTG+TGG 0.664176 5_1:-673559 Msa0709500:CDS
GAGAACGAAGATGATTTGGA+GGG 0.675668 5_1:+674644 None:intergenic
GGTTGTTGACAATACTGTGG+AGG 0.683546 5_1:-673556 Msa0709500:CDS
GGTGATCAGAGGAAATAGTG+TGG 0.728293 5_1:-673387 Msa0709500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr5_1:673364-673383 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr5_1:673432-673451 Msa0709500:intron 10.0%
!!! AACCTTTTTTTTTTTTTTAA+TGG + chr5_1:673364-673383 None:intergenic 10.0%
!!! TAATTTTTTAACTGAATTTT+TGG - chr5_1:673432-673451 Msa0709500:intron 10.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr5_1:673359-673378 Msa0709500:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr5_1:673858-673877 Msa0709500:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr5_1:674366-674385 Msa0709500:intron 15.0%
!! TGCCATTAAAAAAAAAAAAA+AGG - chr5_1:673359-673378 Msa0709500:CDS 15.0%
!! TATTCATATAAATCTTTCTA+CGG - chr5_1:673858-673877 Msa0709500:intron 15.0%
!! ACATTTATAACTAAATTTCA+AGG - chr5_1:674366-674385 Msa0709500:intron 15.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr5_1:673189-673208 Msa0709500:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr5_1:673717-673736 Msa0709500:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr5_1:673805-673824 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr5_1:673805-673824 Msa0709500:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr5_1:673806-673825 Msa0709500:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr5_1:673859-673878 Msa0709500:intron 20.0%
!!! TATGCATTTTTTTTTTCGAT+AGG - chr5_1:673189-673208 Msa0709500:three_prime_UTR 20.0%
!! ATATGGTAGCTTATATTATT+TGG - chr5_1:673717-673736 Msa0709500:intron 20.0%
!! ATTCATAAAGGAATGAAAAA+CGG + chr5_1:673805-673824 None:intergenic 20.0%
!!! TTTTTCATTCCTTTATGAAT+TGG - chr5_1:673805-673824 Msa0709500:intron 20.0%
!!! TTTTCATTCCTTTATGAATT+GGG - chr5_1:673806-673825 Msa0709500:intron 20.0%
!! ATTCATATAAATCTTTCTAC+GGG - chr5_1:673859-673878 Msa0709500:intron 20.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr5_1:673196-673215 Msa0709500:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr5_1:673575-673594 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr5_1:673807-673826 Msa0709500:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr5_1:673930-673949 Msa0709500:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr5_1:673957-673976 Msa0709500:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr5_1:674105-674124 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr5_1:674560-674579 None:intergenic 25.0%
!!! TTTTTTTTTCGATAGGTACA+TGG - chr5_1:673196-673215 Msa0709500:three_prime_UTR 25.0%
! TAACCACTTCTTCTATTAAT+TGG + chr5_1:673575-673594 None:intergenic 25.0%
! TTTCATTCCTTTATGAATTG+GGG - chr5_1:673807-673826 Msa0709500:intron 25.0%
! ATATGTATCTATGTACATGT+GGG - chr5_1:673930-673949 Msa0709500:intron 25.0%
! ACATGTGTATAAATGGATAT+TGG - chr5_1:673957-673976 Msa0709500:intron 25.0%
! CAACAACCAAATTCATAAAT+TGG + chr5_1:674105-674124 None:intergenic 25.0%
! AAATGTGATTTCAACTAAAG+AGG + chr5_1:674560-674579 None:intergenic 25.0%
AATGCTTACTTCTTCAAATC+TGG + chr5_1:673092-673111 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr5_1:673156-673175 Msa0709500:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr5_1:673384-673403 Msa0709500:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr5_1:673569-673588 Msa0709500:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr5_1:673700-673719 Msa0709500:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr5_1:673808-673827 Msa0709500:intron 30.0%
CATGTACATAGATACATATC+AGG + chr5_1:673929-673948 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr5_1:673929-673948 Msa0709500:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr5_1:673950-673969 Msa0709500:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr5_1:674017-674036 Msa0709500:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr5_1:674096-674115 Msa0709500:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr5_1:674146-674165 Msa0709500:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr5_1:674184-674203 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr5_1:674424-674443 Msa0709500:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr5_1:674672-674691 Msa0709500:five_prime_UTR 30.0%
AATGCTTACTTCTTCAAATC+TGG + chr5_1:673092-673111 None:intergenic 30.0%
! TTTTGAATTTCTACTGCACT+TGG - chr5_1:673156-673175 Msa0709500:three_prime_UTR 30.0%
!! TTTTGTAGTTTGTGTGAAGA+TGG - chr5_1:673384-673403 Msa0709500:CDS 30.0%
GATCCAATTAATAGAAGAAG+TGG - chr5_1:673569-673588 Msa0709500:CDS 30.0%
TGTAATTTCTCTCGCTTATA+TGG - chr5_1:673700-673719 Msa0709500:intron 30.0%
TTCATTCCTTTATGAATTGG+GGG - chr5_1:673808-673827 Msa0709500:intron 30.0%
CATGTACATAGATACATATC+AGG + chr5_1:673929-673948 None:intergenic 30.0%
GATATGTATCTATGTACATG+TGG - chr5_1:673929-673948 Msa0709500:intron 30.0%
GGGTTTAACATGTGTATAAA+TGG - chr5_1:673950-673969 Msa0709500:intron 30.0%
AGGAATTATACTGAAGTATG+TGG - chr5_1:674017-674036 Msa0709500:intron 30.0%
CTTCGACCAATTTATGAATT+TGG - chr5_1:674096-674115 Msa0709500:intron 30.0%
GCAATGAGAAAAATGACATA+GGG - chr5_1:674146-674165 Msa0709500:intron 30.0%
!! ACTTGATAATGCATAGTATG+AGG + chr5_1:674184-674203 None:intergenic 30.0%
! TGCAATTGTGGATTGTAATA+TGG - chr5_1:674424-674443 Msa0709500:intron 30.0%
! TTCATTTATGTGCTCTTTTC+TGG - chr5_1:674672-674691 Msa0709500:five_prime_UTR 30.0%
ACTCATGGTGAAAGAACAAA+CGG + chr5_1:673054-673073 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr5_1:673054-673073 Msa0709500:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr5_1:673482-673501 Msa0709500:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr5_1:673483-673502 Msa0709500:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr5_1:673739-673758 Msa0709500:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr5_1:673997-674016 Msa0709500:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr5_1:674061-674080 Msa0709500:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr5_1:674114-674133 Msa0709500:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr5_1:674145-674164 Msa0709500:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr5_1:674150-674169 Msa0709500:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr5_1:674332-674351 None:intergenic 35.0%
ACTCATGGTGAAAGAACAAA+CGG + chr5_1:673054-673073 None:intergenic 35.0%
TTTGTTCTTTCACCATGAGT+AGG - chr5_1:673054-673073 Msa0709500:three_prime_UTR 35.0%
TTTCTAGGTACAAGATTGAG+TGG - chr5_1:673482-673501 Msa0709500:intron 35.0%
TTCTAGGTACAAGATTGAGT+GGG - chr5_1:673483-673502 Msa0709500:intron 35.0%
GCATTATAAAGTGAAGTTCG+AGG - chr5_1:673739-673758 Msa0709500:intron 35.0%
CATGTCTTATGATTTAGCTG+AGG - chr5_1:673997-674016 Msa0709500:intron 35.0%
AATGCAAATCGCATGATTGT+TGG - chr5_1:674061-674080 Msa0709500:intron 35.0%
TTTGGTTGTTGACAATACTG+TGG - chr5_1:674114-674133 Msa0709500:intron 35.0%
GGCAATGAGAAAAATGACAT+AGG - chr5_1:674145-674164 Msa0709500:intron 35.0%
TGAGAAAAATGACATAGGGA+TGG - chr5_1:674150-674169 Msa0709500:intron 35.0%
AATTAGATGCTTCTGTTCAC+TGG + chr5_1:674332-674351 None:intergenic 35.0%
! GAGAACGAAGATGATTTGGA+GGG + chr5_1:673032-673051 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr5_1:673036-673055 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr5_1:673089-673108 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr5_1:673217-673236 Msa0709500:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr5_1:673459-673478 Msa0709500:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr5_1:673467-673486 Msa0709500:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr5_1:673610-673629 Msa0709500:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr5_1:673647-673666 Msa0709500:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr5_1:673817-673836 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr5_1:673915-673934 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr5_1:674093-674112 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr5_1:674153-674172 Msa0709500:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr5_1:674229-674248 Msa0709500:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr5_1:674265-674284 Msa0709500:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr5_1:674298-674317 Msa0709500:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr5_1:674404-674423 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr5_1:674412-674431 Msa0709500:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr5_1:674447-674466 Msa0709500:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr5_1:674448-674467 Msa0709500:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr5_1:674458-674477 Msa0709500:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr5_1:674625-674644 Msa0709500:exon 40.0%
! GAGAACGAAGATGATTTGGA+GGG + chr5_1:673032-673051 None:intergenic 40.0%
AACGGAGAACGAAGATGATT+TGG + chr5_1:673036-673055 None:intergenic 40.0%
GCTTACTTCTTCAAATCTGG+TGG + chr5_1:673089-673108 None:intergenic 40.0%
GGACAAACAGCTTCAAAGTA+AGG - chr5_1:673217-673236 Msa0709500:three_prime_UTR 40.0%
CACTATTGCTATGAGTTCAG+TGG - chr5_1:673459-673478 Msa0709500:intron 40.0%
CTATGAGTTCAGTGGTTTCT+AGG - chr5_1:673467-673486 Msa0709500:intron 40.0%
! CTGTATGTGAGAGCTTTTAC+TGG - chr5_1:673610-673629 Msa0709500:CDS 40.0%
TGGATTGCAGAGAAAAAGTG+TGG - chr5_1:673647-673666 Msa0709500:intron 40.0%
CGTAATCCCCCAATTCATAA+AGG + chr5_1:673817-673836 None:intergenic 40.0%
CATATCAGGAACAAACAGAC+AGG + chr5_1:673915-673934 None:intergenic 40.0%
TCATAAATTGGTCGAAGCCA+CGG + chr5_1:674093-674112 None:intergenic 40.0%
GAAAAATGACATAGGGATGG+TGG - chr5_1:674153-674172 Msa0709500:intron 40.0%
CATCTTATAGAGCTTGAGCT+AGG - chr5_1:674229-674248 Msa0709500:intron 40.0%
! AATTTTCACTCGCTTTCTGC+AGG - chr5_1:674265-674284 Msa0709500:intron 40.0%
AAATAGTGTGGTCACTGTAG+AGG - chr5_1:674298-674317 Msa0709500:intron 40.0%
TTCTACTCCTAGCATCTAAG+CGG + chr5_1:674404-674423 None:intergenic 40.0%
CTAGGAGTAGAATGCAATTG+TGG - chr5_1:674412-674431 Msa0709500:intron 40.0%
TCATCTTAGCGAGAAATCTG+AGG - chr5_1:674447-674466 Msa0709500:intron 40.0%
CATCTTAGCGAGAAATCTGA+GGG - chr5_1:674448-674467 Msa0709500:intron 40.0%
! AGAAATCTGAGGGTCTTTTC+TGG - chr5_1:674458-674477 Msa0709500:intron 40.0%
TCGAAAATTGCAGCTGTTGA+TGG - chr5_1:674625-674644 Msa0709500:exon 40.0%
! AACGAAGATGATTTGGAGGG+TGG + chr5_1:673029-673048 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr5_1:673033-673052 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr5_1:673059-673078 Msa0709500:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr5_1:673060-673079 Msa0709500:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr5_1:673627-673646 Msa0709500:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr5_1:674073-674092 Msa0709500:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr5_1:674117-674136 Msa0709500:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr5_1:674124-674143 Msa0709500:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr5_1:674286-674305 Msa0709500:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr5_1:674394-674413 Msa0709500:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr5_1:674462-674481 Msa0709500:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr5_1:674487-674506 Msa0709500:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr5_1:674488-674507 Msa0709500:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr5_1:674497-674516 Msa0709500:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr5_1:674501-674520 Msa0709500:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr5_1:674507-674526 Msa0709500:intron 45.0%
! AACGAAGATGATTTGGAGGG+TGG + chr5_1:673029-673048 None:intergenic 45.0%
! GGAGAACGAAGATGATTTGG+AGG + chr5_1:673033-673052 None:intergenic 45.0%
TCTTTCACCATGAGTAGGTC+AGG - chr5_1:673059-673078 Msa0709500:three_prime_UTR 45.0%
CTTTCACCATGAGTAGGTCA+GGG - chr5_1:673060-673079 Msa0709500:three_prime_UTR 45.0%
! TACTGGCTGCGAACATTCTT+TGG - chr5_1:673627-673646 Msa0709500:intron 45.0%
ATGATTGTTGGTACTCTCCG+TGG - chr5_1:674073-674092 Msa0709500:intron 45.0%
GGTTGTTGACAATACTGTGG+AGG - chr5_1:674117-674136 Msa0709500:intron 45.0%
GACAATACTGTGGAGGTGAA+TGG - chr5_1:674124-674143 Msa0709500:intron 45.0%
GGTGATCAGAGGAAATAGTG+TGG - chr5_1:674286-674305 Msa0709500:intron 45.0%
ACAGAAACCGCTTAGATGCT+AGG - chr5_1:674394-674413 Msa0709500:intron 45.0%
!! ATCTGAGGGTCTTTTCTGGT+TGG - chr5_1:674462-674481 Msa0709500:CDS 45.0%
!! TGTGAGTGCTGGATGCATTT+AGG - chr5_1:674487-674506 Msa0709500:intron 45.0%
!! GTGAGTGCTGGATGCATTTA+GGG - chr5_1:674488-674507 Msa0709500:intron 45.0%
! GGATGCATTTAGGGTTGTAG+TGG - chr5_1:674497-674516 Msa0709500:intron 45.0%
! GCATTTAGGGTTGTAGTGGA+TGG - chr5_1:674501-674520 Msa0709500:intron 45.0%
!! AGGGTTGTAGTGGATGGTAA+TGG - chr5_1:674507-674526 Msa0709500:intron 45.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr5_1:673288-673307 Msa0709500:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr5_1:673337-673356 None:intergenic 5.0%
!!! TTTTTTTTTTAAATCAAATT+TGG - chr5_1:673288-673307 Msa0709500:three_prime_UTR 5.0%
!! CTATATATATAAATATAAAA+AGG + chr5_1:673337-673356 None:intergenic 5.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr5_1:673664-673683 Msa0709500:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr5_1:674476-674495 Msa0709500:intron 50.0%
GTGTGGCATGTCTTTGCTAC+TGG - chr5_1:673664-673683 Msa0709500:intron 50.0%
!! TCTGGTTGGTTTGTGAGTGC+TGG - chr5_1:674476-674495 Msa0709500:intron 50.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr5_1:674275-674294 Msa0709500:intron 55.0%
CGCTTTCTGCAGGTGATCAG+AGG - chr5_1:674275-674294 Msa0709500:intron 55.0%
TGGCTGCCCTGACCTACTCA+TGG + chr5_1:673069-673088 None:intergenic 60.0%
TGGCTGCCCTGACCTACTCA+TGG + chr5_1:673069-673088 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 672989 674706 672989 ID=Msa0709500;Name=Msa0709500
chr5_1 mRNA 672989 674706 672989 ID=Msa0709500-mRNA-1;Parent=Msa0709500;Name=Msa0709500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=79|1|1|1|1|1|4|357|80
chr5_1 exon 672989 673408 672989 ID=Msa0709500-mRNA-1:exon:253;Parent=Msa0709500-mRNA-1
chr5_1 exon 673521 673642 673521 ID=Msa0709500-mRNA-1:exon:252;Parent=Msa0709500-mRNA-1
chr5_1 exon 674462 674484 674462 ID=Msa0709500-mRNA-1:exon:251;Parent=Msa0709500-mRNA-1
chr5_1 exon 674593 674706 674593 ID=Msa0709500-mRNA-1:exon:250;Parent=Msa0709500-mRNA-1
chr5_1 five_prime_UTR 674628 674706 674628 ID=Msa0709500-mRNA-1:five_prime_utr;Parent=Msa0709500-mRNA-1
chr5_1 CDS 674593 674627 674593 ID=Msa0709500-mRNA-1:cds;Parent=Msa0709500-mRNA-1
chr5_1 CDS 674462 674484 674462 ID=Msa0709500-mRNA-1:cds;Parent=Msa0709500-mRNA-1
chr5_1 CDS 673521 673642 673521 ID=Msa0709500-mRNA-1:cds;Parent=Msa0709500-mRNA-1
chr5_1 CDS 673346 673408 673346 ID=Msa0709500-mRNA-1:cds;Parent=Msa0709500-mRNA-1
chr5_1 three_prime_UTR 672989 673345 672989 ID=Msa0709500-mRNA-1:three_prime_utr;Parent=Msa0709500-mRNA-1
Gene Sequence

>Msa0709500

ATGAGTAGGTCAGGGCAGCCACCAGATTTGAAGAAGTACATGGACAAACAGCTTCAAATCAAGCTGAATGCAAATCGCATGATTGTTGGTACTCTCCGTGGCTTCGACCAATTTATGAATTTGGTTGTTGACAATACTGTGGAGGTGAATGGCAATGAGAAAAATGACATAGGGATGGTGGTGATCAGAGGAAATAGTGTGGTCACTGTAGAGGCGCTTGAACCAGTGAACAGAAGCATCTAA

Protein sequence

>Msa0709500

MSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPVNRSI*