Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079440 | XP_003625667.2 | 97.279 | 294 | 6 | 1 | 1 | 294 | 1 | 292 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079440 | sp|Q62348|TSN_MOUSE | 39.485 | 233 | 127 | 6 | 67 | 291 | 2 | 228 | 1.01e-44 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079440 | A0A396H6T0 | 97.279 | 294 | 6 | 1 | 1 | 294 | 1 | 292 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152350 | Msa1079440 | 0.804947 | 1.691393e-49 | -8.615850e-47 |
| Msa1079440 | Msa1222370 | 0.812117 | 4.981713e-51 | -8.615850e-47 |
| Msa1079440 | Msa1260320 | 0.840884 | 6.643946e-58 | -8.615850e-47 |
| Msa1079440 | Msa1330410 | 0.807836 | 4.160649e-50 | -8.615850e-47 |
| Msa1079440 | Msa1406570 | 0.824965 | 6.064740e-54 | -8.615850e-47 |
| Msa1079440 | Msa1437900 | 0.807800 | 4.234273e-50 | -8.615850e-47 |
| Msa0529830 | Msa1079440 | 0.803032 | 4.230695e-49 | -8.615850e-47 |
| Msa0585510 | Msa1079440 | 0.806452 | 8.168343e-50 | -8.615850e-47 |
| Msa0881070 | Msa1079440 | 0.819041 | 1.430194e-52 | -8.615850e-47 |
| Msa0979060 | Msa1079440 | 0.805109 | 1.564137e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079440 | MtrunA17_Chr7g0264411 | 97.279 | 294 | 6 | 1 | 1 | 294 | 1 | 292 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079440 | AT2G37020.1 | 70.175 | 228 | 68 | 0 | 67 | 294 | 81 | 308 | 1.10e-116 | 338 |
| Msa1079440 | AT2G37020.3 | 70.175 | 228 | 68 | 0 | 67 | 294 | 82 | 309 | 1.42e-116 | 338 |
| Msa1079440 | AT2G37020.2 | 66.892 | 148 | 49 | 0 | 67 | 214 | 82 | 229 | 2.29e-65 | 205 |
Find 71 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAGGGGTTAGGGTTTA+AGG | 0.083687 | 7_2:+78658529 | None:intergenic |
| TCTCACAAAGGCTTTGAAAA+AGG | 0.268821 | 7_2:+78654659 | None:intergenic |
| TTACTACGATGTTAAGATTA+GGG | 0.288887 | 7_2:-78654878 | Msa1079440:CDS |
| CGGAAACAACGGTTCGAATT+CGG | 0.315878 | 7_2:+78658342 | None:intergenic |
| CCTAGTGGTGGATTCAATTT+CGG | 0.328394 | 7_2:+78658322 | None:intergenic |
| AGGAAGAAGATGAAGGGGTT+AGG | 0.336016 | 7_2:+78658521 | None:intergenic |
| AAGCAACTTGCTGATATTCT+TGG | 0.339733 | 7_2:-78657760 | Msa1079440:CDS |
| TTTACTACGATGTTAAGATT+AGG | 0.364173 | 7_2:-78654879 | Msa1079440:CDS |
| AAGAGTGCTTACCAATTCAT+TGG | 0.382693 | 7_2:+78655529 | None:intergenic |
| CATTTCGTAGATTGAGCATT+CGG | 0.387062 | 7_2:+78655229 | None:intergenic |
| TGAAACCAGCACTTCGTAAC+GGG | 0.405699 | 7_2:-78658592 | Msa1079440:CDS |
| GGAAGAAGATGAAGGGGTTA+GGG | 0.416524 | 7_2:+78658522 | None:intergenic |
| TTTGCGCACTGGCTTGAAAC+GGG | 0.417853 | 7_2:-78657575 | Msa1079440:CDS |
| TGAGGAAGAAAAGCAGGAAA+TGG | 0.419748 | 7_2:+78658454 | None:intergenic |
| CCATCTCTCGAGAAGCAATT+CGG | 0.422428 | 7_2:-78658407 | Msa1079440:CDS |
| AATGTAGGTATCACGGTGAT+TGG | 0.428571 | 7_2:-78657634 | Msa1079440:intron |
| GATATCCTGGTCAATACTAT+AGG | 0.431215 | 7_2:-78657735 | Msa1079440:intron |
| AGAACTCATCTCGAACAATC+TGG | 0.437715 | 7_2:-78658377 | Msa1079440:CDS |
| GTGGTTAATCAAGTAACAGC+TGG | 0.470525 | 7_2:-78655309 | Msa1079440:CDS |
| AAAGAAGCCGAGGAAATGCT+TGG | 0.474222 | 7_2:-78657536 | Msa1079440:CDS |
| CCGAATTGCTTCTCGAGAGA+TGG | 0.478123 | 7_2:+78658407 | None:intergenic |
| GATATTCTTGGAGGATATCC+TGG | 0.480077 | 7_2:-78657748 | Msa1079440:CDS |
| ATCTGCAACTGACTCACCAT+TGG | 0.480540 | 7_2:+78654846 | None:intergenic |
| CGCCATTGAGGAAGAAAAGC+AGG | 0.481574 | 7_2:+78658448 | None:intergenic |
| CAACTTGCTGATATTCTTGG+AGG | 0.493720 | 7_2:-78657757 | Msa1079440:CDS |
| GGTTCGAATTCGGTCGCGTA+AGG | 0.501714 | 7_2:+78658352 | None:intergenic |
| GAGGAAGAAAAGCAGGAAAT+GGG | 0.506068 | 7_2:+78658455 | None:intergenic |
| CATCACTCTCGTCCTACTCC+AGG | 0.507042 | 7_2:-78658272 | Msa1079440:intron |
| TGAAGTGAGGAAGAAGATGA+AGG | 0.512270 | 7_2:+78658514 | None:intergenic |
| TCTGCAACTGACTCACCATT+GGG | 0.512525 | 7_2:+78654847 | None:intergenic |
| TAATTTGCAGCCAAGGTATG+TGG | 0.513757 | 7_2:-78655328 | Msa1079440:intron |
| TTGCTGCGGAGGAAGTTTGA+TGG | 0.514446 | 7_2:-78655204 | Msa1079440:intron |
| GAAGTGAGGAAGAAGATGAA+GGG | 0.515010 | 7_2:+78658515 | None:intergenic |
| TGCTTCTCGAGAGATGGATC+AGG | 0.518523 | 7_2:+78658413 | None:intergenic |
| GGTGAGTCAGTTGCAGATCA+AGG | 0.527024 | 7_2:-78654841 | Msa1079440:CDS |
| CCGAAATTGAATCCACCACT+AGG | 0.528558 | 7_2:-78658322 | Msa1079440:CDS |
| AACGGTTGGAGTGTGAGAAA+TGG | 0.529885 | 7_2:+78658491 | None:intergenic |
| ACTTGATTAACCACATACCT+TGG | 0.535246 | 7_2:+78655318 | None:intergenic |
| TAGCACATCAATCTGAGACT+TGG | 0.536345 | 7_2:+78657795 | None:intergenic |
| AAGAAGCCGAGGAAATGCTT+GGG | 0.541712 | 7_2:-78657535 | Msa1079440:CDS |
| TAGATTGAGCATTCGGAATG+CGG | 0.549962 | 7_2:+78655236 | None:intergenic |
| TTGCAGATCAAGGAATCAAA+GGG | 0.552447 | 7_2:-78654831 | Msa1079440:CDS |
| AAGTGAGGAAGAAGATGAAG+GGG | 0.552924 | 7_2:+78658516 | None:intergenic |
| TTGAAGTTTATTAATGCTTG+CGG | 0.553990 | 7_2:-78654589 | None:intergenic |
| GTTGCAGATCAAGGAATCAA+AGG | 0.555080 | 7_2:-78654832 | Msa1079440:CDS |
| TGGTTAATCAAGTAACAGCT+GGG | 0.555939 | 7_2:-78655308 | Msa1079440:CDS |
| GATGTTGAAGACTACCTAGT+TGG | 0.566972 | 7_2:-78656253 | Msa1079440:intron |
| TTGTTGATGAAAGGAAGTAA+AGG | 0.567859 | 7_2:-78654714 | Msa1079440:intron |
| GAGATTGAGAGCGAAACGGT+TGG | 0.578285 | 7_2:+78658477 | None:intergenic |
| ATTAGGGGTTTGACACCCAA+TGG | 0.581889 | 7_2:-78654862 | Msa1079440:CDS |
| CGTACACCCAAGCATTTCCT+CGG | 0.589797 | 7_2:+78657529 | None:intergenic |
| AGCTGAAGAGAACGCCATTG+AGG | 0.591517 | 7_2:+78658436 | None:intergenic |
| TACTACGATGTTAAGATTAG+GGG | 0.597934 | 7_2:-78654877 | Msa1079440:CDS |
| CTGGGGACTATGATTGTCCA+AGG | 0.604732 | 7_2:-78655290 | Msa1079440:CDS |
| ATGGGAGATTGAGAGCGAAA+CGG | 0.605262 | 7_2:+78658473 | None:intergenic |
| AGCATACATAAGCCTAGTGG+TGG | 0.606206 | 7_2:+78658310 | None:intergenic |
| TCTACATAATGTAGGTATCA+CGG | 0.616208 | 7_2:-78657641 | Msa1079440:intron |
| TACGAAATGATTTGCTGCGG+AGG | 0.616264 | 7_2:-78655215 | Msa1079440:CDS |
| ATGAAACCAGCACTTCGTAA+CGG | 0.616318 | 7_2:-78658593 | Msa1079440:CDS |
| GGATTCAATTTCGGAAACAA+CGG | 0.617107 | 7_2:+78658331 | None:intergenic |
| TATGTCAGACTAGATAGACT+TGG | 0.619804 | 7_2:-78654797 | Msa1079440:three_prime_UTR |
| AATCACCTATAGTATTGACC+AGG | 0.622785 | 7_2:+78657730 | None:intergenic |
| ACTTAGAATACTCACCAACT+AGG | 0.632609 | 7_2:+78656239 | None:intergenic |
| GGGAATTGGTTACCTGGAGT+AGG | 0.636577 | 7_2:+78658260 | None:intergenic |
| TCAACATCTAGATTGAACTC+TGG | 0.636901 | 7_2:+78656268 | None:intergenic |
| ATCTACGAAATGATTTGCTG+CGG | 0.637645 | 7_2:-78655218 | Msa1079440:CDS |
| GTGTGAGAAATGGTGAAGTG+AGG | 0.647321 | 7_2:+78658501 | None:intergenic |
| TCTCAAACACAAAGAAGCCG+AGG | 0.669711 | 7_2:-78657546 | Msa1079440:CDS |
| AGAGTTCTAAGTTCTCACAA+AGG | 0.694984 | 7_2:+78654647 | None:intergenic |
| GGTTAATCAAGTAACAGCTG+GGG | 0.727745 | 7_2:-78655307 | Msa1079440:CDS |
| ACTAGCATACATAAGCCTAG+TGG | 0.728523 | 7_2:+78658307 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAAATTTATATTATT+TGG | - | chr7_2:78655778-78655797 | Msa1079440:intron | 0.0% |
| !! | TTTATAAATTTATATTATTT+GGG | - | chr7_2:78655779-78655798 | Msa1079440:intron | 0.0% |
| !! | TATGATAATCATATTTAAAT+TGG | + | chr7_2:78657161-78657180 | None:intergenic | 10.0% |
| !! | TATGATTATCATAAAAAATA+TGG | - | chr7_2:78657168-78657187 | Msa1079440:intron | 10.0% |
| !! | ATGATTATCATAAAAAATAT+GGG | - | chr7_2:78657169-78657188 | Msa1079440:intron | 10.0% |
| !! | AAATGTAATTGCTTAAATTA+GGG | + | chr7_2:78655003-78655022 | None:intergenic | 15.0% |
| !!! | CTTTTTTAATCTATAACAAA+CGG | - | chr7_2:78655313-78655332 | Msa1079440:CDS | 15.0% |
| !!! | TTTTTTAATCTATAACAAAC+GGG | - | chr7_2:78655314-78655333 | Msa1079440:CDS | 15.0% |
| !! | ATAAATTTATATTATTTGGG+TGG | - | chr7_2:78655782-78655801 | Msa1079440:intron | 15.0% |
| !! | TAAATTTATATTATTTGGGT+GGG | - | chr7_2:78655783-78655802 | Msa1079440:intron | 15.0% |
| !!! | TAATTGTTTTTTTGTTTGAA+TGG | - | chr7_2:78657013-78657032 | Msa1079440:intron | 15.0% |
| !!! | TTTTGCACTTTATTTTTTTT+AGG | - | chr7_2:78657103-78657122 | Msa1079440:intron | 15.0% |
| !!! | ATATTTTACATCTAAAGAAA+GGG | + | chr7_2:78658602-78658621 | None:intergenic | 15.0% |
| !!! | TATATTTTACATCTAAAGAA+AGG | + | chr7_2:78658603-78658622 | None:intergenic | 15.0% |
| !! | GAAATGTAATTGCTTAAATT+AGG | + | chr7_2:78655004-78655023 | None:intergenic | 20.0% |
| !!! | TTTTCGTAAAACTCATTTTT+AGG | - | chr7_2:78655269-78655288 | Msa1079440:CDS | 20.0% |
| !!! | TTAATGTGATTTTTGACATT+TGG | - | chr7_2:78655380-78655399 | Msa1079440:intron | 20.0% |
| !!! | TATTACAGTTTGTACATTTT+AGG | + | chr7_2:78655988-78656007 | None:intergenic | 20.0% |
| !!! | TCAATAAACTTTGAAGTTAA+TGG | - | chr7_2:78656722-78656741 | Msa1079440:intron | 20.0% |
| !! | AAAAAATAAAGTGCAAAAAG+AGG | + | chr7_2:78657101-78657120 | None:intergenic | 20.0% |
| !! | AATATGATTATCATCTAGAA+AGG | - | chr7_2:78657407-78657426 | Msa1079440:intron | 20.0% |
| !!! | ATTTATTTAGAGAGTATGTT+CGG | - | chr7_2:78657500-78657519 | Msa1079440:intron | 20.0% |
| !!! | ATAGTCAATTCAAATTTTAC+AGG | - | chr7_2:78657609-78657628 | Msa1079440:CDS | 20.0% |
| !!! | TTTATTGATTTTTGTTATGC+AGG | - | chr7_2:78657651-78657670 | Msa1079440:intron | 20.0% |
| !! | ATAAAACCATGTTATCTTTA+AGG | - | chr7_2:78657835-78657854 | Msa1079440:intron | 20.0% |
| !!! | AAAAACTTTAAAACATTCCT+TGG | + | chr7_2:78657947-78657966 | None:intergenic | 20.0% |
| !! | AGAAATAACTGTAGATATAT+AGG | + | chr7_2:78658481-78658500 | None:intergenic | 20.0% |
| !!! | TATTTCTAATTGTTGATGAA+AGG | - | chr7_2:78658494-78658513 | Msa1079440:CDS | 20.0% |
| ! | TTTAAAGAAGAAGAATGAGA+GGG | + | chr7_2:78654980-78654999 | None:intergenic | 25.0% |
| !!! | ATGTATTGCTTATTGATTCA+AGG | - | chr7_2:78655064-78655083 | Msa1079440:intron | 25.0% |
| !!! | TGTATTGCTTATTGATTCAA+GGG | - | chr7_2:78655065-78655084 | Msa1079440:intron | 25.0% |
| ! | AACACGAAAACATATACTTA+TGG | + | chr7_2:78655340-78655359 | None:intergenic | 25.0% |
| !! | TATTCTGTCTTTTCTTTTTG+TGG | - | chr7_2:78655533-78655552 | Msa1079440:intron | 25.0% |
| ! | TATGCATTTCATTATGACAA+AGG | - | chr7_2:78655934-78655953 | Msa1079440:intron | 25.0% |
| ! | TAATATAAAACCTTCCTACA+AGG | - | chr7_2:78656003-78656022 | Msa1079440:intron | 25.0% |
| ! | AATATAAAACCTTCCTACAA+GGG | - | chr7_2:78656004-78656023 | Msa1079440:intron | 25.0% |
| ! | GCTTCTTATGTCAATTAATT+AGG | - | chr7_2:78656298-78656317 | Msa1079440:intron | 25.0% |
| ! | TGCTAATACAACTATAAATG+TGG | + | chr7_2:78656497-78656516 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTAAACATCTAAC+TGG | - | chr7_2:78656583-78656602 | Msa1079440:intron | 25.0% |
| !! | TGTTGTTTAAACATCTAACT+GGG | - | chr7_2:78656584-78656603 | Msa1079440:intron | 25.0% |
| !! | ATTAAATCTTCCAACCTTTT+TGG | - | chr7_2:78656637-78656656 | Msa1079440:intron | 25.0% |
| !! | TTCTATCCATTCTAAAAAGA+AGG | - | chr7_2:78656664-78656683 | Msa1079440:intron | 25.0% |
| !! | TCTATCCATTCTAAAAAGAA+GGG | - | chr7_2:78656665-78656684 | Msa1079440:intron | 25.0% |
| ! | TTGAAGTTAATGGTTTATGT+TGG | - | chr7_2:78656732-78656751 | Msa1079440:intron | 25.0% |
| ! | CAACTTATTCATAATCACTA+CGG | + | chr7_2:78656799-78656818 | None:intergenic | 25.0% |
| !! | CTCTTTTCTTTTCTTTTTGT+TGG | - | chr7_2:78656833-78656852 | Msa1079440:intron | 25.0% |
| ! | TGAAGTAAACGTTAACATTA+TGG | + | chr7_2:78656859-78656878 | None:intergenic | 25.0% |
| !! | AGCTATTGTTCTAAATCAAA+TGG | + | chr7_2:78657327-78657346 | None:intergenic | 25.0% |
| ! | ACCAAGATAATCAAATGATA+TGG | - | chr7_2:78657470-78657489 | Msa1079440:intron | 25.0% |
| ! | ACCATATCATTTGATTATCT+TGG | + | chr7_2:78657474-78657493 | None:intergenic | 25.0% |
| !!! | TTGTTTTATGTCCAATGAAT+TGG | - | chr7_2:78657677-78657696 | Msa1079440:intron | 25.0% |
| ! | ATCAACCTGTAAAAAAAAGT+AGG | - | chr7_2:78657730-78657749 | Msa1079440:intron | 25.0% |
| !!! | TATCTCCTACTTTTTTTTAC+AGG | + | chr7_2:78657738-78657757 | None:intergenic | 25.0% |
| !! | CGCAATGTTTATAACTATTT+TGG | - | chr7_2:78657763-78657782 | Msa1079440:CDS | 25.0% |
| !! | TCTTTTCCTTAAAGATAACA+TGG | + | chr7_2:78657844-78657863 | None:intergenic | 25.0% |
| ! | AAAAGATGTTATCCAAATAG+TGG | + | chr7_2:78658273-78658292 | None:intergenic | 25.0% |
| ! | TTTACTACGATGTTAAGATT+AGG | - | chr7_2:78658338-78658357 | Msa1079440:CDS | 25.0% |
| ! | TTACTACGATGTTAAGATTA+GGG | - | chr7_2:78658339-78658358 | Msa1079440:CDS | 25.0% |
| GTTTAAAGAAGAAGAATGAG+AGG | + | chr7_2:78654981-78655000 | None:intergenic | 30.0% | |
| AGCAATACATTGAACATGAA+TGG | + | chr7_2:78655054-78655073 | None:intergenic | 30.0% | |
| !! | GTATTGCTTATTGATTCAAG+GGG | - | chr7_2:78655066-78655085 | Msa1079440:intron | 30.0% |
| ATTATGTAGAACCAAACTGT+AGG | + | chr7_2:78655566-78655585 | None:intergenic | 30.0% | |
| !! | AGTTTGGTTCTACATAATGT+AGG | - | chr7_2:78655568-78655587 | Msa1079440:intron | 30.0% |
| TCTACATAATGTAGGTATCA+CGG | - | chr7_2:78655576-78655595 | Msa1079440:intron | 30.0% | |
| TACATGTGAATAAGTAACAC+AGG | + | chr7_2:78655750-78655769 | None:intergenic | 30.0% | |
| AGAATCATAGGACTTCATAA+TGG | + | chr7_2:78655865-78655884 | None:intergenic | 30.0% | |
| ! | TGTTTTCTATTTTCCCTTGT+AGG | + | chr7_2:78656020-78656039 | None:intergenic | 30.0% |
| AAAACAAAAGAACTTCATGC+AGG | - | chr7_2:78656034-78656053 | Msa1079440:intron | 30.0% | |
| TATGAAGAAAACTGTATGCA+TGG | - | chr7_2:78656093-78656112 | Msa1079440:intron | 30.0% | |
| CCACTGATGCAAAAAATTAA+TGG | + | chr7_2:78656348-78656367 | None:intergenic | 30.0% | |
| !!! | CCATTAATTTTTTGCATCAG+TGG | - | chr7_2:78656345-78656364 | Msa1079440:intron | 30.0% |
| ATAGAAATGTCCAAAAAGGT+TGG | + | chr7_2:78656650-78656669 | None:intergenic | 30.0% | |
| ATGGATAGAAATGTCCAAAA+AGG | + | chr7_2:78656654-78656673 | None:intergenic | 30.0% | |
| ! | CTATCCATTCTAAAAAGAAG+GGG | - | chr7_2:78656666-78656685 | Msa1079440:intron | 30.0% |
| ! | TATCCATTCTAAAAAGAAGG+GGG | - | chr7_2:78656667-78656686 | Msa1079440:intron | 30.0% |
| CTTACAAATCTCATAATGCT+AGG | + | chr7_2:78656890-78656909 | None:intergenic | 30.0% | |
| ! | GTTAACTATTTTGCAGTGAA+TGG | - | chr7_2:78656925-78656944 | Msa1079440:intron | 30.0% |
| TTTGTTTGAATGGAATGCAT+TGG | - | chr7_2:78657023-78657042 | Msa1079440:intron | 30.0% | |
| TTTGAGTGAATGAGTGAATA+AGG | - | chr7_2:78657134-78657153 | Msa1079440:intron | 30.0% | |
| ! | TGAACATCACCATTTGATTT+AGG | - | chr7_2:78657549-78657568 | Msa1079440:CDS | 30.0% |
| !!! | GCTCTAGCTTTTTTTAATCA+AGG | - | chr7_2:78657578-78657597 | Msa1079440:CDS | 30.0% |
| TTGGCTGCAAATTACAAAAT+AGG | + | chr7_2:78657883-78657902 | None:intergenic | 30.0% | |
| !! | TATTTTGTAATTTGCAGCCA+AGG | - | chr7_2:78657882-78657901 | Msa1079440:intron | 30.0% |
| ACAACAAGGAGAAAAAATGT+TGG | + | chr7_2:78658061-78658080 | None:intergenic | 30.0% | |
| TTCACAATGATAGTAACACA+GGG | + | chr7_2:78658084-78658103 | None:intergenic | 30.0% | |
| TTTCACAATGATAGTAACAC+AGG | + | chr7_2:78658085-78658104 | None:intergenic | 30.0% | |
| TACCATTTCTTAAGAGAGAT+TGG | - | chr7_2:78658111-78658130 | Msa1079440:intron | 30.0% | |
| ! | AAACTTCTTCGACTTTTCTT+AGG | + | chr7_2:78658321-78658340 | None:intergenic | 30.0% |
| TACTACGATGTTAAGATTAG+GGG | - | chr7_2:78658340-78658359 | Msa1079440:CDS | 30.0% | |
| ! | TTGTTGATGAAAGGAAGTAA+AGG | - | chr7_2:78658503-78658522 | Msa1079440:CDS | 30.0% |
| GGATTCAATTTCGGAAACAA+CGG | + | chr7_2:78654889-78654908 | None:intergenic | 35.0% | |
| !! | TTGGATAGAGCTTTTAGAGA+AGG | - | chr7_2:78655399-78655418 | Msa1079440:intron | 35.0% |
| !! | AAGCAACTTGCTGATATTCT+TGG | - | chr7_2:78655457-78655476 | Msa1079440:intron | 35.0% |
| GATATCCTGGTCAATACTAT+AGG | - | chr7_2:78655482-78655501 | Msa1079440:intron | 35.0% | |
| !! | AATCACCTATAGTATTGACC+AGG | + | chr7_2:78655490-78655509 | None:intergenic | 35.0% |
| CAGAATACACAGAAGTTCAT+CGG | + | chr7_2:78655520-78655539 | None:intergenic | 35.0% | |
| ! | TTCTATTTTCCCTTGTAGGA+AGG | + | chr7_2:78656016-78656035 | None:intergenic | 35.0% |
| TTAGCTGTACAGATTTCACA+TGG | - | chr7_2:78656066-78656085 | Msa1079440:intron | 35.0% | |
| AGAAAACTGTATGCATGGAT+TGG | - | chr7_2:78656098-78656117 | Msa1079440:intron | 35.0% | |
| ATTGCAACTGCTCTAACATT+TGG | - | chr7_2:78656202-78656221 | Msa1079440:intron | 35.0% | |
| TTGCAACTGCTCTAACATTT+GGG | - | chr7_2:78656203-78656222 | Msa1079440:intron | 35.0% | |
| TATCTTCCTAATGTGATGTG+CGG | - | chr7_2:78656232-78656251 | Msa1079440:intron | 35.0% | |
| CTACTCCAGACTGAAATAAA+GGG | + | chr7_2:78656262-78656281 | None:intergenic | 35.0% | |
| ACTACTCCAGACTGAAATAA+AGG | + | chr7_2:78656263-78656282 | None:intergenic | 35.0% | |
| !! | GTTCTAAAACATAGTTCTCC+CGG | + | chr7_2:78656546-78656565 | None:intergenic | 35.0% |
| !! | AATCCCCCTTCTTTTTAGAA+TGG | + | chr7_2:78656673-78656692 | None:intergenic | 35.0% |
| ! | ATTCTAAAAAGAAGGGGGAT+TGG | - | chr7_2:78656672-78656691 | Msa1079440:intron | 35.0% |
| ! | TTCTAAAAAGAAGGGGGATT+GGG | - | chr7_2:78656673-78656692 | Msa1079440:intron | 35.0% |
| TAATCACTACGGACATGAAT+GGG | + | chr7_2:78656788-78656807 | None:intergenic | 35.0% | |
| ATAATCACTACGGACATGAA+TGG | + | chr7_2:78656789-78656808 | None:intergenic | 35.0% | |
| AATCTCATAATGCTAGGAAC+AGG | + | chr7_2:78656884-78656903 | None:intergenic | 35.0% | |
| TCAACATCTAGATTGAACTC+TGG | + | chr7_2:78656952-78656971 | None:intergenic | 35.0% | |
| ACTTAGAATACTCACCAACT+AGG | + | chr7_2:78656981-78657000 | None:intergenic | 35.0% | |
| AGCAAGACAATCAAACGATA+TGG | - | chr7_2:78657230-78657249 | Msa1079440:intron | 35.0% | |
| ATTCAACTCAGACTCTTACT+GGG | + | chr7_2:78657390-78657409 | None:intergenic | 35.0% | |
| TATTCAACTCAGACTCTTAC+TGG | + | chr7_2:78657391-78657410 | None:intergenic | 35.0% | |
| ATAGAGTCTGAATCTCTTTC+AGG | - | chr7_2:78657440-78657459 | Msa1079440:intron | 35.0% | |
| TAGAGTCTGAATCTCTTTCA+GGG | - | chr7_2:78657441-78657460 | Msa1079440:intron | 35.0% | |
| !! | AAGAGTGCTTACCAATTCAT+TGG | + | chr7_2:78657691-78657710 | None:intergenic | 35.0% |
| ! | GAAATATTGACTAGAGAGAC+AGG | - | chr7_2:78657791-78657810 | Msa1079440:CDS | 35.0% |
| ACTTGATTAACCACATACCT+TGG | + | chr7_2:78657902-78657921 | None:intergenic | 35.0% | |
| TGGTTAATCAAGTAACAGCT+GGG | - | chr7_2:78657909-78657928 | Msa1079440:intron | 35.0% | |
| CATTTCGTAGATTGAGCATT+CGG | + | chr7_2:78657991-78658010 | None:intergenic | 35.0% | |
| !! | ATCTACGAAATGATTTGCTG+CGG | - | chr7_2:78657999-78658018 | Msa1079440:intron | 35.0% |
| AGGAGAAAAAATGTTGGACA+AGG | + | chr7_2:78658055-78658074 | None:intergenic | 35.0% | |
| GACCAATCTCTCTTAAGAAA+TGG | + | chr7_2:78658116-78658135 | None:intergenic | 35.0% | |
| ! | GGATAACATCTTTTCACTGT+TGG | - | chr7_2:78658279-78658298 | Msa1079440:CDS | 35.0% |
| TTGCAGATCAAGGAATCAAA+GGG | - | chr7_2:78658386-78658405 | Msa1079440:CDS | 35.0% | |
| TATGTCAGACTAGATAGACT+TGG | - | chr7_2:78658420-78658439 | Msa1079440:CDS | 35.0% | |
| !! | AGATAGACTTGGCTTTTTGT+TGG | - | chr7_2:78658431-78658450 | Msa1079440:CDS | 35.0% |
| !! | TCTCACAAAGGCTTTGAAAA+AGG | + | chr7_2:78658561-78658580 | None:intergenic | 35.0% |
| !! | AGAGTTCTAAGTTCTCACAA+AGG | + | chr7_2:78658573-78658592 | None:intergenic | 35.0% |
| ATGAAACCAGCACTTCGTAA+CGG | - | chr7_2:78654624-78654643 | Msa1079440:three_prime_UTR | 40.0% | |
| AAGTGAGGAAGAAGATGAAG+GGG | + | chr7_2:78654704-78654723 | None:intergenic | 40.0% | |
| GAAGTGAGGAAGAAGATGAA+GGG | + | chr7_2:78654705-78654724 | None:intergenic | 40.0% | |
| TGAAGTGAGGAAGAAGATGA+AGG | + | chr7_2:78654706-78654725 | None:intergenic | 40.0% | |
| GAGGAAGAAAAGCAGGAAAT+GGG | + | chr7_2:78654765-78654784 | None:intergenic | 40.0% | |
| TGAGGAAGAAAAGCAGGAAA+TGG | + | chr7_2:78654766-78654785 | None:intergenic | 40.0% | |
| !! | TTCCTGCTTTTCTTCCTCAA+TGG | - | chr7_2:78654767-78654786 | Msa1079440:intron | 40.0% |
| AGAACTCATCTCGAACAATC+TGG | - | chr7_2:78654840-78654859 | Msa1079440:CDS | 40.0% | |
| !! | CCTAGTGGTGGATTCAATTT+CGG | + | chr7_2:78654898-78654917 | None:intergenic | 40.0% |
| ACTAGCATACATAAGCCTAG+TGG | + | chr7_2:78654913-78654932 | None:intergenic | 40.0% | |
| GAAGAAGAATGAGAGGGAAT+TGG | + | chr7_2:78654974-78654993 | None:intergenic | 40.0% | |
| ! | TAGCACATCAATCTGAGACT+TGG | + | chr7_2:78655425-78655444 | None:intergenic | 40.0% |
| !! | CAACTTGCTGATATTCTTGG+AGG | - | chr7_2:78655460-78655479 | Msa1079440:intron | 40.0% |
| GATATTCTTGGAGGATATCC+TGG | - | chr7_2:78655469-78655488 | Msa1079440:intron | 40.0% | |
| AATGTAGGTATCACGGTGAT+TGG | - | chr7_2:78655583-78655602 | Msa1079440:intron | 40.0% | |
| TTGACATACGCACACATACA+AGG | + | chr7_2:78655811-78655830 | None:intergenic | 40.0% | |
| TCCTATGATTCTAAGCCGTA+GGG | - | chr7_2:78655873-78655892 | Msa1079440:intron | 40.0% | |
| TGCAACTGCTCTAACATTTG+GGG | - | chr7_2:78656204-78656223 | Msa1079440:intron | 40.0% | |
| ATCTTCCTAATGTGATGTGC+GGG | - | chr7_2:78656233-78656252 | Msa1079440:intron | 40.0% | |
| ! | AGTCTGGAGTAGTAAGATCA+AGG | - | chr7_2:78656270-78656289 | Msa1079440:CDS | 40.0% |
| ! | GTCTGGAGTAGTAAGATCAA+GGG | - | chr7_2:78656271-78656290 | Msa1079440:CDS | 40.0% |
| GTTGTATTAGCATGCAATGC+CGG | - | chr7_2:78656505-78656524 | Msa1079440:intron | 40.0% | |
| ! | TAACTGGGAGAACTGTGTTT+TGG | - | chr7_2:78656599-78656618 | Msa1079440:intron | 40.0% |
| !!! | CTGTGTTTTGGAACTTCTCT+TGG | - | chr7_2:78656611-78656630 | Msa1079440:intron | 40.0% |
| TCTAAAAAGAAGGGGGATTG+GGG | - | chr7_2:78656674-78656693 | Msa1079440:intron | 40.0% | |
| GATGTTGAAGACTACCTAGT+TGG | - | chr7_2:78656964-78656983 | Msa1079440:intron | 40.0% | |
| AGACAATCAAACGATATGGC+TGG | - | chr7_2:78657234-78657253 | Msa1079440:intron | 40.0% | |
| ! | CAATAGCTGTAGCTTTTGTC+TGG | - | chr7_2:78657339-78657358 | Msa1079440:intron | 40.0% |
| CTGAATCTCTTTCAGGGTAA+AGG | - | chr7_2:78657447-78657466 | Msa1079440:intron | 40.0% | |
| AGCTAGACGCCTAAATCAAA+TGG | + | chr7_2:78657561-78657580 | None:intergenic | 40.0% | |
| ! | TAATTTGCAGCCAAGGTATG+TGG | - | chr7_2:78657889-78657908 | Msa1079440:intron | 40.0% |
| GTGGTTAATCAAGTAACAGC+TGG | - | chr7_2:78657908-78657927 | Msa1079440:intron | 40.0% | |
| GGTTAATCAAGTAACAGCTG+GGG | - | chr7_2:78657910-78657929 | Msa1079440:intron | 40.0% | |
| TAGATTGAGCATTCGGAATG+CGG | + | chr7_2:78657984-78658003 | None:intergenic | 40.0% | |
| ATAGTAACACAGGGACAACA+AGG | + | chr7_2:78658075-78658094 | None:intergenic | 40.0% | |
| TAGATTACTACGAAGACACG+AGG | + | chr7_2:78658204-78658223 | None:intergenic | 40.0% | |
| TGTATGCACTGCTATCTGTT+TGG | - | chr7_2:78658236-78658255 | Msa1079440:intron | 40.0% | |
| GTTGGCATCTTTCCACTATT+TGG | - | chr7_2:78658258-78658277 | Msa1079440:intron | 40.0% | |
| ! | AACATCTTTTCACTGTTGGC+AGG | - | chr7_2:78658283-78658302 | Msa1079440:CDS | 40.0% |
| GTTGCAGATCAAGGAATCAA+AGG | - | chr7_2:78658385-78658404 | Msa1079440:CDS | 40.0% | |
| TGAAACCAGCACTTCGTAAC+GGG | - | chr7_2:78654625-78654644 | Msa1079440:three_prime_UTR | 45.0% | |
| GATGAAGGGGTTAGGGTTTA+AGG | + | chr7_2:78654691-78654710 | None:intergenic | 45.0% | |
| GGAAGAAGATGAAGGGGTTA+GGG | + | chr7_2:78654698-78654717 | None:intergenic | 45.0% | |
| AGGAAGAAGATGAAGGGGTT+AGG | + | chr7_2:78654699-78654718 | None:intergenic | 45.0% | |
| GTGTGAGAAATGGTGAAGTG+AGG | + | chr7_2:78654719-78654738 | None:intergenic | 45.0% | |
| AACGGTTGGAGTGTGAGAAA+TGG | + | chr7_2:78654729-78654748 | None:intergenic | 45.0% | |
| ATGGGAGATTGAGAGCGAAA+CGG | + | chr7_2:78654747-78654766 | None:intergenic | 45.0% | |
| CCATCTCTCGAGAAGCAATT+CGG | - | chr7_2:78654810-78654829 | Msa1079440:exon | 45.0% | |
| CGGAAACAACGGTTCGAATT+CGG | + | chr7_2:78654878-78654897 | None:intergenic | 45.0% | |
| CCGAAATTGAATCCACCACT+AGG | - | chr7_2:78654895-78654914 | Msa1079440:CDS | 45.0% | |
| AGCATACATAAGCCTAGTGG+TGG | + | chr7_2:78654910-78654929 | None:intergenic | 45.0% | |
| ATGAGAGGGAATTGGTTACC+TGG | + | chr7_2:78654966-78654985 | None:intergenic | 45.0% | |
| GTGGTCTGTAACCTACAGTT+TGG | - | chr7_2:78655552-78655571 | Msa1079440:intron | 45.0% | |
| !!! | TTTTGCGCACTGGCTTGAAA+CGG | - | chr7_2:78655641-78655660 | Msa1079440:intron | 45.0% |
| TCTCAAACACAAAGAAGCCG+AGG | - | chr7_2:78655671-78655690 | Msa1079440:intron | 45.0% | |
| AAAGAAGCCGAGGAAATGCT+TGG | - | chr7_2:78655681-78655700 | Msa1079440:intron | 45.0% | |
| AAGAAGCCGAGGAAATGCTT+GGG | - | chr7_2:78655682-78655701 | Msa1079440:intron | 45.0% | |
| GTCCTATGATTCTAAGCCGT+AGG | - | chr7_2:78655872-78655891 | Msa1079440:intron | 45.0% | |
| CCTATGATTCTAAGCCGTAG+GGG | - | chr7_2:78655874-78655893 | Msa1079440:intron | 45.0% | |
| ! | GGTTGCCCTTTATTTCAGTC+TGG | - | chr7_2:78656254-78656273 | Msa1079440:CDS | 45.0% |
| CCGGTTAGATGTTTAAGCAC+CGG | + | chr7_2:78656527-78656546 | None:intergenic | 45.0% | |
| CCGGTGCTTAAACATCTAAC+CGG | - | chr7_2:78656524-78656543 | Msa1079440:intron | 45.0% | |
| CGGTGCTTAAACATCTAACC+GGG | - | chr7_2:78656525-78656544 | Msa1079440:intron | 45.0% | |
| CATTTACCCTGAAAGACCTG+CGG | + | chr7_2:78657210-78657229 | None:intergenic | 45.0% | |
| !! | TACGAAATGATTTGCTGCGG+AGG | - | chr7_2:78658002-78658021 | Msa1079440:intron | 45.0% |
| TGCACTGCTATCTGTTTGGT+TGG | - | chr7_2:78658240-78658259 | Msa1079440:intron | 45.0% | |
| ATTAGGGGTTTGACACCCAA+TGG | - | chr7_2:78658355-78658374 | Msa1079440:CDS | 45.0% | |
| ! | TCTGCAACTGACTCACCATT+GGG | + | chr7_2:78658373-78658392 | None:intergenic | 45.0% |
| ! | ATCTGCAACTGACTCACCAT+TGG | + | chr7_2:78658374-78658393 | None:intergenic | 45.0% |
| GAGATTGAGAGCGAAACGGT+TGG | + | chr7_2:78654743-78654762 | None:intergenic | 50.0% | |
| CGCCATTGAGGAAGAAAAGC+AGG | + | chr7_2:78654772-78654791 | None:intergenic | 50.0% | |
| AGCTGAAGAGAACGCCATTG+AGG | + | chr7_2:78654784-78654803 | None:intergenic | 50.0% | |
| TGCTTCTCGAGAGATGGATC+AGG | + | chr7_2:78654807-78654826 | None:intergenic | 50.0% | |
| CCGAATTGCTTCTCGAGAGA+TGG | + | chr7_2:78654813-78654832 | None:intergenic | 50.0% | |
| GGGAATTGGTTACCTGGAGT+AGG | + | chr7_2:78654960-78654979 | None:intergenic | 50.0% | |
| !!! | CTATGCTAGCTTTTGCGCAC+TGG | - | chr7_2:78655631-78655650 | Msa1079440:intron | 50.0% |
| !! | TTTGCGCACTGGCTTGAAAC+GGG | - | chr7_2:78655642-78655661 | Msa1079440:intron | 50.0% |
| CGTACACCCAAGCATTTCCT+CGG | + | chr7_2:78655691-78655710 | None:intergenic | 50.0% | |
| CCCCTACGGCTTAGAATCAT+AGG | + | chr7_2:78655877-78655896 | None:intergenic | 50.0% | |
| ATTGAGTCCACAGTCCCCTA+CGG | + | chr7_2:78655891-78655910 | None:intergenic | 50.0% | |
| ! | ACGGACATGAATGGGTTCTG+AGG | + | chr7_2:78656780-78656799 | None:intergenic | 50.0% |
| TTAGAGTCCGCAGGTCTTTC+AGG | - | chr7_2:78657200-78657219 | Msa1079440:intron | 50.0% | |
| TAGAGTCCGCAGGTCTTTCA+GGG | - | chr7_2:78657201-78657220 | Msa1079440:intron | 50.0% | |
| ACTAGAGAGACAGGCATGCA+TGG | - | chr7_2:78657800-78657819 | Msa1079440:CDS | 50.0% | |
| CTGGGGACTATGATTGTCCA+AGG | - | chr7_2:78657927-78657946 | Msa1079440:intron | 50.0% | |
| TTGCTGCGGAGGAAGTTTGA+TGG | - | chr7_2:78658013-78658032 | Msa1079440:intron | 50.0% | |
| GGTGAGTCAGTTGCAGATCA+AGG | - | chr7_2:78658376-78658395 | Msa1079440:CDS | 50.0% | |
| GGTTCGAATTCGGTCGCGTA+AGG | + | chr7_2:78654868-78654887 | None:intergenic | 55.0% | |
| CATCACTCTCGTCCTACTCC+AGG | - | chr7_2:78654945-78654964 | Msa1079440:intron | 55.0% | |
| TTCTAAGCCGTAGGGGACTG+TGG | - | chr7_2:78655881-78655900 | Msa1079440:intron | 55.0% | |
| GGCAACCCGCACATCACATT+AGG | + | chr7_2:78656241-78656260 | None:intergenic | 55.0% | |
| GTGTAGCAGTTAGAGTCCGC+AGG | - | chr7_2:78657191-78657210 | Msa1079440:intron | 55.0% | |
| TAGCGCCCGTTACGAAGTGC+TGG | + | chr7_2:78654633-78654652 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 78654590 | 78658649 | 78654590 | ID=Msa1079440;Name=Msa1079440 |
| chr7_2 | mRNA | 78654590 | 78658649 | 78654590 | ID=Msa1079440-mRNA-1;Parent=Msa1079440;Name=Msa1079440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=25|1|1|1|0.85|0.75|8|192|294 |
| chr7_2 | exon | 78654590 | 78654728 | 78654590 | ID=Msa1079440-mRNA-1:exon:19616;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78654769 | 78654934 | 78654769 | ID=Msa1079440-mRNA-1:exon:19615;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78655205 | 78655340 | 78655205 | ID=Msa1079440-mRNA-1:exon:19614;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78655541 | 78655566 | 78655541 | ID=Msa1079440-mRNA-1:exon:19613;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78656254 | 78656298 | 78656254 | ID=Msa1079440-mRNA-1:exon:19612;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78657534 | 78657649 | 78657534 | ID=Msa1079440-mRNA-1:exon:19611;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78657736 | 78657832 | 78657736 | ID=Msa1079440-mRNA-1:exon:19610;Parent=Msa1079440-mRNA-1 |
| chr7_2 | exon | 78658273 | 78658649 | 78658273 | ID=Msa1079440-mRNA-1:exon:19609;Parent=Msa1079440-mRNA-1 |
| chr7_2 | five_prime_UTR | 78658625 | 78658649 | 78658625 | ID=Msa1079440-mRNA-1:five_prime_utr;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78658273 | 78658624 | 78658273 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78657736 | 78657832 | 78657736 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78657534 | 78657649 | 78657534 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78656254 | 78656298 | 78656254 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78655541 | 78655566 | 78655541 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78655205 | 78655340 | 78655205 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | CDS | 78654822 | 78654934 | 78654822 | ID=Msa1079440-mRNA-1:cds;Parent=Msa1079440-mRNA-1 |
| chr7_2 | three_prime_UTR | 78654769 | 78654821 | 78654769 | ID=Msa1079440-mRNA-1:three_prime_utr;Parent=Msa1079440-mRNA-1 |
| chr7_2 | three_prime_UTR | 78654590 | 78654728 | 78654590 | ID=Msa1079440-mRNA-1:three_prime_utr;Parent=Msa1079440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
