Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585510 | XP_003604201.1 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.76e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585510 | sp|Q8W487|YB95_ARATH | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.30e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585510 | G7JD84 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 2.27e-145 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0585510 | 0.806813 | 6.855631e-50 | -8.615850e-47 |
| Msa0029270 | Msa0585510 | 0.810282 | 1.245613e-50 | -8.615850e-47 |
| Msa0030200 | Msa0585510 | 0.813359 | 2.663487e-51 | -8.615850e-47 |
| Msa0032580 | Msa0585510 | 0.810483 | 1.127365e-50 | -8.615850e-47 |
| Msa0033130 | Msa0585510 | 0.819108 | 1.380658e-52 | -8.615850e-47 |
| Msa0033950 | Msa0585510 | 0.810844 | 9.416680e-51 | -8.615850e-47 |
| Msa0043660 | Msa0585510 | 0.814796 | 1.283453e-51 | -8.615850e-47 |
| Msa0048550 | Msa0585510 | 0.817075 | 3.979205e-52 | -8.615850e-47 |
| Msa0054480 | Msa0585510 | 0.814261 | 1.686107e-51 | -8.615850e-47 |
| Msa0055180 | Msa0585510 | 0.805500 | 1.295669e-49 | -8.615850e-47 |
| Msa0061080 | Msa0585510 | 0.802662 | 5.044178e-49 | -8.615850e-47 |
| Msa0063530 | Msa0585510 | 0.800641 | 1.310516e-48 | -8.615850e-47 |
| Msa0070700 | Msa0585510 | 0.830288 | 3.195421e-55 | -8.615850e-47 |
| Msa0079820 | Msa0585510 | 0.801079 | 1.066336e-48 | -8.615850e-47 |
| Msa0105620 | Msa0585510 | 0.809962 | 1.459968e-50 | -8.615850e-47 |
| Msa0118590 | Msa0585510 | 0.819423 | 1.170286e-52 | -8.615850e-47 |
| Msa0123360 | Msa0585510 | 0.814389 | 1.579276e-51 | -8.615850e-47 |
| Msa0127050 | Msa0585510 | 0.801270 | 9.745743e-49 | -8.615850e-47 |
| Msa0137550 | Msa0585510 | 0.829583 | 4.746295e-55 | -8.615850e-47 |
| Msa0139350 | Msa0585510 | 0.824244 | 8.965121e-54 | -8.615850e-47 |
| Msa0144370 | Msa0585510 | 0.838805 | 2.311664e-57 | -8.615850e-47 |
| Msa0150820 | Msa0585510 | 0.801145 | 1.033678e-48 | -8.615850e-47 |
| Msa0159170 | Msa0585510 | 0.830034 | 3.686223e-55 | -8.615850e-47 |
| Msa0160550 | Msa0585510 | 0.822492 | 2.300879e-53 | -8.615850e-47 |
| Msa0165660 | Msa0585510 | 0.840757 | 7.174885e-58 | -8.615850e-47 |
| Msa0168230 | Msa0585510 | 0.831549 | 1.567630e-55 | -8.615850e-47 |
| Msa0169310 | Msa0585510 | 0.803295 | 3.732585e-49 | -8.615850e-47 |
| Msa0170200 | Msa0585510 | 0.805546 | 1.267007e-49 | -8.615850e-47 |
| Msa0172970 | Msa0585510 | 0.808331 | 3.264573e-50 | -8.615850e-47 |
| Msa0187120 | Msa0585510 | 0.815603 | 8.496199e-52 | -8.615850e-47 |
| Msa0220720 | Msa0585510 | 0.859256 | 4.691972e-63 | -8.615850e-47 |
| Msa0385580 | Msa0585510 | 0.800361 | 1.494521e-48 | -8.615850e-47 |
| Msa0398810 | Msa0585510 | 0.802009 | 6.873566e-49 | -8.615850e-47 |
| Msa0402650 | Msa0585510 | 0.820455 | 6.798794e-53 | -8.615850e-47 |
| Msa0402790 | Msa0585510 | 0.821818 | 3.297423e-53 | -8.615850e-47 |
| Msa0449210 | Msa0585510 | 0.851286 | 9.796720e-61 | -8.615850e-47 |
| Msa0482130 | Msa0585510 | 0.804738 | 1.869855e-49 | -8.615850e-47 |
| Msa0262050 | Msa0585510 | 0.821104 | 4.819993e-53 | -8.615850e-47 |
| Msa0279700 | Msa0585510 | 0.801459 | 8.917264e-49 | -8.615850e-47 |
| Msa0299870 | Msa0585510 | 0.848260 | 6.863884e-60 | -8.615850e-47 |
| Msa0309750 | Msa0585510 | 0.824476 | 7.907794e-54 | -8.615850e-47 |
| Msa0337240 | Msa0585510 | 0.854340 | 1.314260e-61 | -8.615850e-47 |
| Msa0493410 | Msa0585510 | 0.839335 | 1.685041e-57 | -8.615850e-47 |
| Msa0497210 | Msa0585510 | 0.811305 | 7.483219e-51 | -8.615850e-47 |
| Msa0497490 | Msa0585510 | 0.812968 | 3.245079e-51 | -8.615850e-47 |
| Msa0516260 | Msa0585510 | 0.805735 | 1.156228e-49 | -8.615850e-47 |
| Msa0529830 | Msa0585510 | 0.889985 | 1.482772e-73 | -8.615850e-47 |
| Msa0542090 | Msa0585510 | 0.828446 | 8.950822e-55 | -8.615850e-47 |
| Msa0542130 | Msa0585510 | 0.826596 | 2.487679e-54 | -8.615850e-47 |
| Msa0566100 | Msa0585510 | 0.801837 | 7.458362e-49 | -8.615850e-47 |
| Msa0585510 | Msa0625680 | 0.819190 | 1.322950e-52 | -8.615850e-47 |
| Msa0585510 | Msa0649020 | 0.804268 | 2.343508e-49 | -8.615850e-47 |
| Msa0585510 | Msa0660490 | 0.867204 | 1.625783e-65 | -8.615850e-47 |
| Msa0585510 | Msa0689260 | 0.843190 | 1.631546e-58 | -8.615850e-47 |
| Msa0585510 | Msa0692950 | 0.806189 | 9.280223e-50 | -8.615850e-47 |
| Msa0585510 | Msa0711780 | 0.815371 | 9.569222e-52 | -8.615850e-47 |
| Msa0585510 | Msa0715700 | 0.830198 | 3.361710e-55 | -8.615850e-47 |
| Msa0585510 | Msa0754380 | 0.829007 | 6.547735e-55 | -8.615850e-47 |
| Msa0585510 | Msa0793800 | 0.839245 | 1.778026e-57 | -8.615850e-47 |
| Msa0585510 | Msa0794670 | 0.804336 | 2.268611e-49 | -8.615850e-47 |
| Msa0585510 | Msa0831530 | 0.811242 | 7.721820e-51 | -8.615850e-47 |
| Msa0585510 | Msa0876800 | 0.807393 | 5.166062e-50 | -8.615850e-47 |
| Msa0585510 | Msa0932840 | 0.805600 | 1.234326e-49 | -8.615850e-47 |
| Msa0585510 | Msa0945440 | 0.802965 | 4.367438e-49 | -8.615850e-47 |
| Msa0585510 | Msa1009820 | 0.845064 | 5.126011e-59 | -8.615850e-47 |
| Msa0585510 | Msa1051200 | 0.864335 | 1.309367e-64 | -8.615850e-47 |
| Msa0585510 | Msa1079440 | 0.806452 | 8.168343e-50 | -8.615850e-47 |
| Msa0585510 | Msa1082810 | 0.817103 | 3.921873e-52 | -8.615850e-47 |
| Msa0585510 | Msa1137700 | 0.844829 | 5.932275e-59 | -8.615850e-47 |
| Msa0585510 | Msa1138880 | 0.812597 | 3.913315e-51 | -8.615850e-47 |
| Msa0585510 | Msa1153060 | 0.828265 | 9.894968e-55 | -8.615850e-47 |
| Msa0585510 | Msa1160590 | 0.805248 | 1.463360e-49 | -8.615850e-47 |
| Msa0585510 | Msa1162270 | 0.800704 | 1.271925e-48 | -8.615850e-47 |
| Msa0585510 | Msa1181250 | 0.820746 | 5.827148e-53 | -8.615850e-47 |
| Msa0585510 | Msa1181330 | 0.815871 | 7.402164e-52 | -8.615850e-47 |
| Msa0585510 | Msa1224810 | 0.809771 | 1.604601e-50 | -8.615850e-47 |
| Msa0585510 | Msa1245930 | 0.800637 | 1.312845e-48 | -8.615850e-47 |
| Msa0585510 | Msa1260320 | 0.839533 | 1.496929e-57 | -8.615850e-47 |
| Msa0585510 | Msa1263750 | 0.802035 | 6.791195e-49 | -8.615850e-47 |
| Msa0585510 | Msa1333010 | 0.821404 | 4.111291e-53 | -8.615850e-47 |
| Msa0585510 | Msa1358250 | 0.840755 | 7.182847e-58 | -8.615850e-47 |
| Msa0585510 | Msa1384190 | 0.818314 | 2.091417e-52 | -8.615850e-47 |
| Msa0585510 | Msa1392780 | 0.836528 | 8.877499e-57 | -8.615850e-47 |
| Msa0585510 | Msa1400220 | 0.801245 | 9.860923e-49 | -8.615850e-47 |
| Msa0585510 | Msa1403420 | 0.986285 | 2.787149e-166 | -8.615850e-47 |
| Msa0585510 | Msa1429120 | 0.820035 | 8.485624e-53 | -8.615850e-47 |
| Msa0585510 | Msa1457920 | 0.821877 | 3.196068e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585510 | MtrunA17_Chr4g0001071 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.38e-149 | 414 |
| Msa0585510 | MtrunA17_Chr1g0149801 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 2.24e-56 | 179 |
| Msa0585510 | MtrunA17_Chr5g0435861 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 1.14e-29 | 111 |
| Msa0585510 | MtrunA17_Chr7g0239661 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 4.74e-29 | 109 |
| Msa0585510 | MtrunA17_Chr5g0444341 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 1.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585510 | AT1G15870.1 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 6.23e-85 | 253 |
| Msa0585510 | AT1G80720.2 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 5.91e-81 | 243 |
| Msa0585510 | AT1G80720.1 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 2.70e-75 | 226 |
| Msa0585510 | AT4G31930.1 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.07e-51 | 167 |
| Msa0585510 | AT2G39795.1 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.42e-27 | 104 |
| Msa0585510 | AT3G55605.1 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 1.74e-25 | 100 |
| Msa0585510 | AT5G02050.1 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 2.64e-24 | 97.8 |
| Msa0585510 | AT5G05990.1 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 7.98e-20 | 85.9 |
| Msa0585510 | AT2G39790.1 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 1.48e-17 | 79.3 |
| Msa0585510 | AT4G32605.1 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 9.68e-13 | 65.9 |
Find 71 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGACCATATTGTATTTA+TGG | 0.150777 | 4_2:+6452460 | Msa0585510:three_prime_UTR |
| ACTTAGAAGATTCTACTTAT+TGG | 0.210228 | 4_2:+6452678 | Msa0585510:three_prime_UTR |
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4_2:-6449026 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4_2:-6449045 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4_2:-6451759 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4_2:+6451649 | Msa0585510:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4_2:-6448954 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4_2:-6448955 | None:intergenic |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4_2:+6451822 | Msa0585510:CDS |
| TTAGAAGTAGAAATTGTATA+AGG | 0.337923 | 4_2:+6452429 | Msa0585510:three_prime_UTR |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4_2:+6452176 | Msa0585510:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4_2:-6448964 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4_2:+6451671 | Msa0585510:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4_2:+6452184 | Msa0585510:CDS |
| GTTGATTCTTTACAGGGAAC+TGG | 0.376425 | 4_2:+6452140 | Msa0585510:intron |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4_2:-6449044 | None:intergenic |
| GGAACTGGATGATGAGTTGC+AGG | 0.401530 | 4_2:+6452155 | Msa0585510:CDS |
| TAGATTGATTCATTTCCATT+TGG | 0.404110 | 4_2:+6448852 | None:intergenic |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4_2:+6451802 | Msa0585510:CDS |
| AGAAATTGTATAAGGTAAGT+AGG | 0.421027 | 4_2:+6452437 | Msa0585510:three_prime_UTR |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4_2:-6449080 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4_2:+6451590 | Msa0585510:CDS |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4_2:+6451583 | Msa0585510:CDS |
| CTGTTCTGTCAATTAAATCA+AGG | 0.444750 | 4_2:-6452735 | None:intergenic |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4_2:-6448972 | None:intergenic |
| CACGCGTTTCTCTTTGGGAA+AGG | 0.466093 | 4_2:-6452500 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4_2:-6449007 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4_2:+6451572 | Msa0585510:intron |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4_2:-6451617 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | 4_2:-6451893 | None:intergenic |
| ACTGAAGTCTATTTCAAAGA+AGG | 0.490124 | 4_2:+6452377 | Msa0585510:three_prime_UTR |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4_2:-6451618 | None:intergenic |
| TAGGATTTATAATAACCAAA+TGG | 0.496644 | 4_2:-6448867 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4_2:-6451882 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4_2:-6448971 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4_2:+6451778 | Msa0585510:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4_2:-6451777 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4_2:+6452263 | Msa0585510:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4_2:+6452255 | Msa0585510:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4_2:+6451767 | Msa0585510:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4_2:+6452185 | Msa0585510:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4_2:+6451798 | Msa0585510:CDS |
| CGGAACAAACGTGCCATTGG+AGG | 0.526107 | 4_2:-6448917 | None:intergenic |
| GAACGGAACAAACGTGCCAT+TGG | 0.527520 | 4_2:-6448920 | None:intergenic |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4_2:+6451586 | Msa0585510:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4_2:-6449127 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4_2:-6449119 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | 4_2:-6449001 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4_2:+6451869 | Msa0585510:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4_2:+6451609 | Msa0585510:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4_2:+6451599 | Msa0585510:CDS |
| GCGTTTCTCTTTGGGAAAGG+AGG | 0.557838 | 4_2:-6452497 | None:intergenic |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4_2:+6451760 | Msa0585510:CDS |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4_2:-6451881 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4_2:+6451761 | Msa0585510:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4_2:+6452186 | Msa0585510:CDS |
| GGAACAAACGTGCCATTGGA+GGG | 0.575445 | 4_2:-6448916 | None:intergenic |
| ACAAAAGAGATATGATCTCA+TGG | 0.581216 | 4_2:-6452353 | None:intergenic |
| GTTTAGAATCAGAGACAACA+AGG | 0.600086 | 4_2:-6448894 | None:intergenic |
| AATTTCTACTTCTAAAGCAG+TGG | 0.605411 | 4_2:-6452421 | None:intergenic |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4_2:-6451613 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4_2:+6452259 | Msa0585510:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4_2:-6451681 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4_2:+6452269 | Msa0585510:CDS |
| TCTGATTCTAAACCCTCCAA+TGG | 0.634226 | 4_2:+6448904 | Msa0585510:exon |
| TAGATAACTGAGTCACAGCA+TGG | 0.638949 | 4_2:-6452762 | None:intergenic |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4_2:-6451578 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4_2:+6449049 | Msa0585510:CDS |
| TTTAGAATCAGAGACAACAA+GGG | 0.691321 | 4_2:-6448893 | None:intergenic |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4_2:-6451678 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4_2:+6452236 | Msa0585510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTGATTTTTTAAAATTA+AGG | + | chr4_2:6449750-6449769 | Msa0585510:intron | 10.0% |
| !!! | AGAACTTTTTACTTTTTTTA+AGG | + | chr4_2:6449243-6449262 | Msa0585510:intron | 15.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | + | chr4_2:6449461-6449480 | Msa0585510:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | - | chr4_2:6449973-6449992 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | + | chr4_2:6449986-6450005 | Msa0585510:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | - | chr4_2:6450302-6450321 | None:intergenic | 15.0% |
| !!! | AACTTTATTTTTCAAAATCA+GGG | - | chr4_2:6450611-6450630 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | + | chr4_2:6450613-6450632 | Msa0585510:intron | 15.0% |
| !! | TAGGATTTATAATAACCAAA+TGG | - | chr4_2:6448870-6448889 | None:intergenic | 20.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | - | chr4_2:6449134-6449153 | None:intergenic | 20.0% |
| !! | GAGAAAAAAAAAATACTTAC+AGG | - | chr4_2:6449139-6449158 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | + | chr4_2:6449251-6449270 | Msa0585510:intron | 20.0% |
| !! | TTTGGTATAACTTAAGAAAA+CGG | - | chr4_2:6449587-6449606 | None:intergenic | 20.0% |
| !!! | CTGATTTTTTAAAATTAAGG+TGG | + | chr4_2:6449753-6449772 | Msa0585510:intron | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | + | chr4_2:6449806-6449825 | Msa0585510:intron | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | - | chr4_2:6450296-6450315 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | - | chr4_2:6450297-6450316 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | - | chr4_2:6450612-6450631 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | + | chr4_2:6450612-6450631 | Msa0585510:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | + | chr4_2:6450657-6450676 | Msa0585510:intron | 20.0% |
| !!! | TAGAATATTTAGAGTTTGTT+TGG | + | chr4_2:6450692-6450711 | Msa0585510:intron | 20.0% |
| !!! | TTTTTTTATCAAGGTAGAAA+GGG | + | chr4_2:6450821-6450840 | Msa0585510:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | - | chr4_2:6450858-6450877 | None:intergenic | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | - | chr4_2:6450863-6450882 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | - | chr4_2:6451078-6451097 | None:intergenic | 20.0% |
| !! | GTACAATCAATTTCAAAATA+CGG | - | chr4_2:6451122-6451141 | None:intergenic | 20.0% |
| !!! | ATGGTGTTTTTATTTCTAAA+AGG | + | chr4_2:6451386-6451405 | Msa0585510:intron | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | + | chr4_2:6452078-6452097 | Msa0585510:intron | 20.0% |
| !! | TTAGAAGTAGAAATTGTATA+AGG | + | chr4_2:6452429-6452448 | Msa0585510:three_prime_UTR | 20.0% |
| !! | CAAAAACCATAAATACAATA+TGG | - | chr4_2:6452469-6452488 | None:intergenic | 20.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | + | chr4_2:6449359-6449378 | Msa0585510:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | - | chr4_2:6449373-6449392 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | - | chr4_2:6449374-6449393 | None:intergenic | 25.0% |
| !! | TGGATAAACAACTTAATTTG+TGG | + | chr4_2:6449379-6449398 | Msa0585510:intron | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | - | chr4_2:6449605-6449624 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | - | chr4_2:6449629-6449648 | None:intergenic | 25.0% |
| ! | TGTCTATAACAAAAGATGAA+GGG | - | chr4_2:6449665-6449684 | None:intergenic | 25.0% |
| ! | ATGTCTATAACAAAAGATGA+AGG | - | chr4_2:6449666-6449685 | None:intergenic | 25.0% |
| ! | AAACATCTTGTGTAAAAAAC+AGG | + | chr4_2:6450149-6450168 | Msa0585510:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+GGG | + | chr4_2:6450150-6450169 | Msa0585510:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | - | chr4_2:6450215-6450234 | None:intergenic | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | + | chr4_2:6450502-6450521 | Msa0585510:intron | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | - | chr4_2:6450569-6450588 | None:intergenic | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | + | chr4_2:6450575-6450594 | Msa0585510:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | + | chr4_2:6450658-6450677 | Msa0585510:intron | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | + | chr4_2:6450797-6450816 | Msa0585510:intron | 25.0% |
| !!! | GATAATGGCTTTTTTTATCA+AGG | + | chr4_2:6450812-6450831 | Msa0585510:intron | 25.0% |
| !!! | CTTTTTTTATCAAGGTAGAA+AGG | + | chr4_2:6450820-6450839 | Msa0585510:intron | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | + | chr4_2:6451075-6451094 | Msa0585510:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | - | chr4_2:6451110-6451129 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | - | chr4_2:6451161-6451180 | None:intergenic | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | - | chr4_2:6451162-6451181 | None:intergenic | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | + | chr4_2:6451353-6451372 | Msa0585510:intron | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | + | chr4_2:6451536-6451555 | Msa0585510:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | + | chr4_2:6451537-6451556 | Msa0585510:intron | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | + | chr4_2:6451649-6451668 | Msa0585510:CDS | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | - | chr4_2:6451657-6451676 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | + | chr4_2:6451761-6451780 | Msa0585510:CDS | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | - | chr4_2:6452001-6452020 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | - | chr4_2:6452134-6452153 | None:intergenic | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | + | chr4_2:6452133-6452152 | Msa0585510:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | + | chr4_2:6452134-6452153 | Msa0585510:intron | 25.0% |
| ! | AGAAATTGTATAAGGTAAGT+AGG | + | chr4_2:6452437-6452456 | Msa0585510:three_prime_UTR | 25.0% |
| ! | AAGTGACCATATTGTATTTA+TGG | + | chr4_2:6452460-6452479 | Msa0585510:three_prime_UTR | 25.0% |
| !! | ATGTCAGAAACTATCTTTTA+TGG | + | chr4_2:6452528-6452547 | Msa0585510:three_prime_UTR | 25.0% |
| !! | TTTTATGGAAGGTTTATTCT+CGG | + | chr4_2:6452543-6452562 | Msa0585510:three_prime_UTR | 25.0% |
| ! | ACTTAGAAGATTCTACTTAT+TGG | + | chr4_2:6452678-6452697 | Msa0585510:three_prime_UTR | 25.0% |
| ! | TTTAGAATCAGAGACAACAA+GGG | - | chr4_2:6448896-6448915 | None:intergenic | 30.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | - | chr4_2:6448949-6448968 | None:intergenic | 30.0% |
| AATGGGAATTTGGTTGATTA+GGG | - | chr4_2:6448957-6448976 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | - | chr4_2:6449083-6449102 | None:intergenic | 30.0% | |
| AAAATACTTACAGGATTGGA+AGG | - | chr4_2:6449130-6449149 | None:intergenic | 30.0% | |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | + | chr4_2:6449154-6449173 | Msa0585510:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | + | chr4_2:6449155-6449174 | Msa0585510:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | + | chr4_2:6449167-6449186 | Msa0585510:intron | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | + | chr4_2:6449168-6449187 | Msa0585510:intron | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | + | chr4_2:6449176-6449195 | Msa0585510:intron | 30.0% |
| CTTTGTTCTTGTTAGAATCA+TGG | + | chr4_2:6449212-6449231 | Msa0585510:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTCAAAA+CGG | + | chr4_2:6449503-6449522 | Msa0585510:intron | 30.0% |
| TATCTACTGGTATAAGCAAT+TGG | - | chr4_2:6449616-6449635 | None:intergenic | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | - | chr4_2:6449712-6449731 | None:intergenic | 30.0% | |
| ATTCAAACAGAGTCTTAAAG+TGG | + | chr4_2:6450063-6450082 | Msa0585510:intron | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | + | chr4_2:6450064-6450083 | Msa0585510:intron | 30.0% | |
| ! | TTTTTACACAAGATGTTTCC+AGG | - | chr4_2:6450147-6450166 | None:intergenic | 30.0% |
| ACATCTTGTGTAAAAAACAG+GGG | + | chr4_2:6450151-6450170 | Msa0585510:intron | 30.0% | |
| CTAAGACTCTGTTTGAATAA+AGG | - | chr4_2:6450216-6450235 | None:intergenic | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | + | chr4_2:6450265-6450284 | Msa0585510:intron | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | - | chr4_2:6450671-6450690 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | + | chr4_2:6450706-6450725 | Msa0585510:intron | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | + | chr4_2:6450790-6450809 | Msa0585510:intron | 30.0% | |
| TAGTTTCTTCCCAATAATCA+GGG | + | chr4_2:6450910-6450929 | Msa0585510:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | + | chr4_2:6451028-6451047 | Msa0585510:intron | 30.0% | |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | - | chr4_2:6451304-6451323 | None:intergenic | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | + | chr4_2:6451301-6451320 | Msa0585510:intron | 30.0% |
| !! | TTTTGATGGCAATAAGTCAA+TGG | + | chr4_2:6451367-6451386 | Msa0585510:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | + | chr4_2:6451497-6451516 | Msa0585510:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | + | chr4_2:6451504-6451523 | Msa0585510:intron | 30.0% |
| CTTGGAGATATTGACAATTA+AGG | - | chr4_2:6451762-6451781 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | + | chr4_2:6451760-6451779 | Msa0585510:CDS | 30.0% | |
| ! | CTTTTTATCACTATACTGTC+CGG | - | chr4_2:6451824-6451843 | None:intergenic | 30.0% |
| AAGTAAACTTACTCAAAGTC+AGG | - | chr4_2:6451896-6451915 | None:intergenic | 30.0% | |
| TGATTGTAAGCAAACAAGTA+GGG | - | chr4_2:6451931-6451950 | None:intergenic | 30.0% | |
| AATAGCCGAATTTGAACAAA+TGG | + | chr4_2:6451993-6452012 | Msa0585510:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | + | chr4_2:6452035-6452054 | Msa0585510:intron | 30.0% | |
| ! | TACAAAATGGTGTCAAATAG+AGG | + | chr4_2:6452048-6452067 | Msa0585510:intron | 30.0% |
| TTTACGATTTCTTGGAAGTA+AGG | + | chr4_2:6452184-6452203 | Msa0585510:CDS | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | + | chr4_2:6452185-6452204 | Msa0585510:CDS | 30.0% | |
| ACAAAAGAGATATGATCTCA+TGG | - | chr4_2:6452356-6452375 | None:intergenic | 30.0% | |
| ACTGAAGTCTATTTCAAAGA+AGG | + | chr4_2:6452377-6452396 | Msa0585510:three_prime_UTR | 30.0% | |
| !! | AATTTCTACTTCTAAAGCAG+TGG | - | chr4_2:6452424-6452443 | None:intergenic | 30.0% |
| ! | CAGAAACTATCTTTTATGGA+AGG | + | chr4_2:6452532-6452551 | Msa0585510:three_prime_UTR | 30.0% |
| CTGTTCTGTCAATTAAATCA+AGG | - | chr4_2:6452738-6452757 | None:intergenic | 30.0% | |
| ! | GTTTAGAATCAGAGACAACA+AGG | - | chr4_2:6448897-6448916 | None:intergenic | 35.0% |
| GAATGGGAATTTGGTTGATT+AGG | - | chr4_2:6448958-6448977 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGAATGGGAATT+TGG | - | chr4_2:6448967-6448986 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | - | chr4_2:6448974-6448993 | None:intergenic | 35.0% |
| ATGATTTGAGAAGAAGGAGA+AGG | - | chr4_2:6449004-6449023 | None:intergenic | 35.0% | |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | + | chr4_2:6449175-6449194 | Msa0585510:intron | 35.0% |
| TTGCATAAGCTAAACTCTCT+TGG | + | chr4_2:6449299-6449318 | Msa0585510:intron | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | + | chr4_2:6449303-6449322 | Msa0585510:intron | 35.0% | |
| TCATAAGCTCAAAACGGTTT+AGG | + | chr4_2:6449509-6449528 | Msa0585510:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | - | chr4_2:6449927-6449946 | None:intergenic | 35.0% |
| TATCTACCAACATAAGCACT+TGG | - | chr4_2:6449938-6449957 | None:intergenic | 35.0% | |
| ! | GAAGCTCCTAAACACATTTT+AGG | - | chr4_2:6450274-6450293 | None:intergenic | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | + | chr4_2:6450346-6450365 | Msa0585510:intron | 35.0% |
| TAGCTATGAAACCTGATTGT+AGG | - | chr4_2:6450360-6450379 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | + | chr4_2:6450365-6450384 | Msa0585510:intron | 35.0% | |
| ! | TACAAAATGGTTAGCTAGTG+CGG | + | chr4_2:6450378-6450397 | Msa0585510:intron | 35.0% |
| TTATCAAGGTAGAAAGGGTA+AGG | + | chr4_2:6450826-6450845 | Msa0585510:intron | 35.0% | |
| GTAGTTTCTTCCCAATAATC+AGG | + | chr4_2:6450909-6450928 | Msa0585510:intron | 35.0% | |
| AGTTTCTTCCCAATAATCAG+GGG | + | chr4_2:6450911-6450930 | Msa0585510:intron | 35.0% | |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | + | chr4_2:6450957-6450976 | Msa0585510:intron | 35.0% |
| GTAAAGACAAACAGTGCATT+TGG | - | chr4_2:6451333-6451352 | None:intergenic | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | + | chr4_2:6451470-6451489 | Msa0585510:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | + | chr4_2:6451471-6451490 | Msa0585510:intron | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | + | chr4_2:6451472-6451491 | Msa0585510:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | + | chr4_2:6451822-6451841 | Msa0585510:CDS | 35.0% | |
| CTGATTGTAAGCAAACAAGT+AGG | - | chr4_2:6451932-6451951 | None:intergenic | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | - | chr4_2:6452033-6452052 | None:intergenic | 35.0% | |
| GGATAGTCTTTACGATTTCT+TGG | + | chr4_2:6452176-6452195 | Msa0585510:CDS | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | + | chr4_2:6452186-6452205 | Msa0585510:CDS | 35.0% | |
| AAGGAGAAAACAGAGATCAT+AGG | + | chr4_2:6452255-6452274 | Msa0585510:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | + | chr4_2:6452259-6452278 | Msa0585510:CDS | 35.0% | |
| ! | TCAGAGACAACAAGGGTTTT+AGG | - | chr4_2:6448889-6448908 | None:intergenic | 40.0% |
| TCTGATTCTAAACCCTCCAA+TGG | + | chr4_2:6448904-6448923 | Msa0585510:exon | 40.0% | |
| !! | TTAGGGTTTTTCGGAGAGAA+CGG | - | chr4_2:6448940-6448959 | None:intergenic | 40.0% |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | - | chr4_2:6448975-6448994 | None:intergenic | 40.0% |
| CTGGAGATGATTTGAGAAGA+AGG | - | chr4_2:6449010-6449029 | None:intergenic | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | - | chr4_2:6449029-6449048 | None:intergenic | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | - | chr4_2:6449047-6449066 | None:intergenic | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | + | chr4_2:6449929-6449948 | Msa0585510:intron | 40.0% | |
| CTTGTGTAAAAAACAGGGGA+AGG | + | chr4_2:6450155-6450174 | Msa0585510:intron | 40.0% | |
| CAATACACCAATTAGTGCAC+CGG | + | chr4_2:6450185-6450204 | Msa0585510:intron | 40.0% | |
| AATACACCAATTAGTGCACC+GGG | + | chr4_2:6450186-6450205 | Msa0585510:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | - | chr4_2:6451581-6451600 | None:intergenic | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | + | chr4_2:6451583-6451602 | Msa0585510:CDS | 40.0% | |
| ! | GTTGATTCTTTACAGGGAAC+TGG | + | chr4_2:6452140-6452159 | Msa0585510:intron | 40.0% |
| GCATCAGTACATGAAACACA+AGG | + | chr4_2:6452236-6452255 | Msa0585510:CDS | 40.0% | |
| AACAGAGATCATAGGATGGA+TGG | + | chr4_2:6452263-6452282 | Msa0585510:CDS | 40.0% | |
| ! | GTTTTCACGCGTTTCTCTTT+GGG | - | chr4_2:6452508-6452527 | None:intergenic | 40.0% |
| ! | TGTTTTCACGCGTTTCTCTT+TGG | - | chr4_2:6452509-6452528 | None:intergenic | 40.0% |
| TAGATAACTGAGTCACAGCA+TGG | - | chr4_2:6452765-6452784 | None:intergenic | 40.0% | |
| CGAAAGCTTCTTTGCGCATT+TGG | - | chr4_2:6449048-6449067 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | + | chr4_2:6449049-6449068 | Msa0585510:CDS | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | - | chr4_2:6449122-6449141 | None:intergenic | 45.0% | |
| GAGTCTTAAAGTGGGAACCT+TGG | + | chr4_2:6450072-6450091 | Msa0585510:intron | 45.0% | |
| ! | CTTGTTGTCACGTGACTGAA+AGG | + | chr4_2:6450107-6450126 | Msa0585510:intron | 45.0% |
| TGTTTGAATAAAGGGCAGCC+CGG | - | chr4_2:6450207-6450226 | None:intergenic | 45.0% | |
| TTCCCAATAATCAGGGGTCA+TGG | + | chr4_2:6450917-6450936 | Msa0585510:intron | 45.0% | |
| AGCCATGACCCCTGATTATT+GGG | - | chr4_2:6450922-6450941 | None:intergenic | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | + | chr4_2:6451572-6451591 | Msa0585510:intron | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | + | chr4_2:6451586-6451605 | Msa0585510:CDS | 45.0% | |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | + | chr4_2:6451590-6451609 | Msa0585510:CDS | 45.0% |
| AATGTAATCCATCGCTCACC+GGG | - | chr4_2:6451620-6451639 | None:intergenic | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | - | chr4_2:6451621-6451640 | None:intergenic | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | + | chr4_2:6451671-6451690 | Msa0585510:CDS | 45.0% | |
| AACAGCTCCATCAAACATGG+TGG | - | chr4_2:6451681-6451700 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | - | chr4_2:6451684-6451703 | None:intergenic | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+CGG | + | chr4_2:6451698-6451717 | Msa0585510:CDS | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | + | chr4_2:6451767-6451786 | Msa0585510:CDS | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | + | chr4_2:6451798-6451817 | Msa0585510:CDS | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | - | chr4_2:6451884-6451903 | None:intergenic | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | + | chr4_2:6452269-6452288 | Msa0585510:CDS | 45.0% | |
| ! | GGAACAAACGTGCCATTGGA+GGG | - | chr4_2:6448919-6448938 | None:intergenic | 50.0% |
| GAACGGAACAAACGTGCCAT+TGG | - | chr4_2:6448923-6448942 | None:intergenic | 50.0% | |
| ACAAGTTTACCGTTGCGCCA+AGG | - | chr4_2:6450092-6450111 | None:intergenic | 50.0% | |
| CAGCCATGACCCCTGATTAT+TGG | - | chr4_2:6450923-6450942 | None:intergenic | 50.0% | |
| TCCGAAAAAAAGCGGTGGTG+TGG | + | chr4_2:6451706-6451725 | Msa0585510:CDS | 50.0% | |
| !!! | GCCACACCACCGCTTTTTTT+CGG | - | chr4_2:6451710-6451729 | None:intergenic | 50.0% |
| AATCATGTGCTCTGCTTGGC+CGG | + | chr4_2:6451802-6451821 | Msa0585510:CDS | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | - | chr4_2:6451885-6451904 | None:intergenic | 50.0% | |
| GGAACTGGATGATGAGTTGC+AGG | + | chr4_2:6452155-6452174 | Msa0585510:CDS | 50.0% | |
| ! | GCGTTTCTCTTTGGGAAAGG+AGG | - | chr4_2:6452500-6452519 | None:intergenic | 50.0% |
| ! | CACGCGTTTCTCTTTGGGAA+AGG | - | chr4_2:6452503-6452522 | None:intergenic | 50.0% |
| ! | CGGAACAAACGTGCCATTGG+AGG | - | chr4_2:6448920-6448939 | None:intergenic | 55.0% |
| AAGTGGGAACCTTGGCGCAA+CGG | + | chr4_2:6450080-6450099 | Msa0585510:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | + | chr4_2:6450115-6450134 | Msa0585510:intron | 55.0% | |
| AAGGTCACGAGGTCAAGTCC+TGG | + | chr4_2:6450126-6450145 | Msa0585510:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | - | chr4_2:6451616-6451635 | None:intergenic | 55.0% | |
| !!! | CCACCGCTTTTTTTCGGAGC+AGG | - | chr4_2:6451704-6451723 | None:intergenic | 55.0% |
| CCTGCTCCGAAAAAAAGCGG+TGG | + | chr4_2:6451701-6451720 | Msa0585510:CDS | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | - | chr4_2:6451780-6451799 | None:intergenic | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | + | chr4_2:6451778-6451797 | Msa0585510:CDS | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | + | chr4_2:6451869-6451888 | Msa0585510:CDS | 55.0% | |
| !! | TTTGTGGTGGATGGCCGACC+CGG | + | chr4_2:6451599-6451618 | Msa0585510:CDS | 60.0% |
| GGGCAGCCCGGTGCACTAAT+TGG | - | chr4_2:6450195-6450214 | None:intergenic | 65.0% | |
| ATGGCCGACCCGGTGAGCGA+TGG | + | chr4_2:6451609-6451628 | Msa0585510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6448854 | 6452792 | 6448854 | ID=Msa0585510;Name=Msa0585510 |
| chr4_2 | mRNA | 6448854 | 6452792 | 6448854 | ID=Msa0585510-mRNA-1;Parent=Msa0585510;Name=Msa0585510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|3|475|234 |
| chr4_2 | exon | 6448854 | 6449138 | 6448854 | ID=Msa0585510-mRNA-1:exon:1559;Parent=Msa0585510-mRNA-1 |
| chr4_2 | exon | 6451578 | 6451903 | 6451578 | ID=Msa0585510-mRNA-1:exon:1560;Parent=Msa0585510-mRNA-1 |
| chr4_2 | exon | 6452155 | 6452792 | 6452155 | ID=Msa0585510-mRNA-1:exon:1561;Parent=Msa0585510-mRNA-1 |
| chr4_2 | five_prime_UTR | 6448854 | 6448922 | 6448854 | ID=Msa0585510-mRNA-1:five_prime_utr;Parent=Msa0585510-mRNA-1 |
| chr4_2 | CDS | 6448923 | 6449138 | 6448923 | ID=Msa0585510-mRNA-1:cds;Parent=Msa0585510-mRNA-1 |
| chr4_2 | CDS | 6451578 | 6451903 | 6451578 | ID=Msa0585510-mRNA-1:cds;Parent=Msa0585510-mRNA-1 |
| chr4_2 | CDS | 6452155 | 6452317 | 6452155 | ID=Msa0585510-mRNA-1:cds;Parent=Msa0585510-mRNA-1 |
| chr4_2 | three_prime_UTR | 6452318 | 6452792 | 6452318 | ID=Msa0585510-mRNA-1:three_prime_utr;Parent=Msa0585510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
