Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529830 | XP_003604201.1 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.76e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529830 | sp|Q8W487|YB95_ARATH | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.30e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529830 | G7JD84 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 2.27e-145 | 414 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0529830 | 0.805450 | 1.327095e-49 | -8.615850e-47 |
| Msa0032580 | Msa0529830 | 0.812313 | 4.515522e-51 | -8.615850e-47 |
| Msa0033130 | Msa0529830 | 0.830524 | 2.798159e-55 | -8.615850e-47 |
| Msa0033950 | Msa0529830 | 0.813325 | 2.710796e-51 | -8.615850e-47 |
| Msa0043660 | Msa0529830 | 0.811337 | 7.361725e-51 | -8.615850e-47 |
| Msa0054480 | Msa0529830 | 0.817596 | 3.037477e-52 | -8.615850e-47 |
| Msa0061080 | Msa0529830 | 0.804523 | 2.074219e-49 | -8.615850e-47 |
| Msa0070700 | Msa0529830 | 0.839064 | 1.981067e-57 | -8.615850e-47 |
| Msa0079820 | Msa0529830 | 0.809793 | 1.587460e-50 | -8.615850e-47 |
| Msa0105620 | Msa0529830 | 0.813071 | 3.081178e-51 | -8.615850e-47 |
| Msa0118590 | Msa0529830 | 0.824842 | 6.484389e-54 | -8.615850e-47 |
| Msa0123360 | Msa0529830 | 0.811642 | 6.320429e-51 | -8.615850e-47 |
| Msa0137550 | Msa0529830 | 0.830688 | 2.550840e-55 | -8.615850e-47 |
| Msa0139350 | Msa0529830 | 0.855982 | 4.376188e-62 | -8.615850e-47 |
| Msa0144370 | Msa0529830 | 0.843643 | 1.235209e-58 | -8.615850e-47 |
| Msa0159170 | Msa0529830 | 0.840858 | 6.747663e-58 | -8.615850e-47 |
| Msa0160550 | Msa0529830 | 0.804153 | 2.476298e-49 | -8.615850e-47 |
| Msa0165660 | Msa0529830 | 0.819864 | 9.281491e-53 | -8.615850e-47 |
| Msa0168230 | Msa0529830 | 0.828217 | 1.016534e-54 | -8.615850e-47 |
| Msa0172970 | Msa0529830 | 0.805186 | 1.507116e-49 | -8.615850e-47 |
| Msa0187120 | Msa0529830 | 0.818880 | 1.555850e-52 | -8.615850e-47 |
| Msa0220720 | Msa0529830 | 0.854182 | 1.459579e-61 | -8.615850e-47 |
| Msa0385580 | Msa0529830 | 0.807862 | 4.108253e-50 | -8.615850e-47 |
| Msa0398810 | Msa0529830 | 0.811767 | 5.938202e-51 | -8.615850e-47 |
| Msa0402650 | Msa0529830 | 0.841945 | 3.492642e-58 | -8.615850e-47 |
| Msa0443500 | Msa0529830 | 0.801613 | 8.292053e-49 | -8.615850e-47 |
| Msa0446050 | Msa0529830 | 0.802372 | 5.787243e-49 | -8.615850e-47 |
| Msa0449210 | Msa0529830 | 0.857694 | 1.371011e-62 | -8.615850e-47 |
| Msa0262050 | Msa0529830 | 0.837775 | 4.258837e-57 | -8.615850e-47 |
| Msa0299870 | Msa0529830 | 0.842029 | 3.318609e-58 | -8.615850e-47 |
| Msa0309750 | Msa0529830 | 0.806657 | 7.396774e-50 | -8.615850e-47 |
| Msa0337240 | Msa0529830 | 0.846027 | 2.809976e-59 | -8.615850e-47 |
| Msa0493410 | Msa0529830 | 0.821192 | 4.601935e-53 | -8.615850e-47 |
| Msa0497490 | Msa0529830 | 0.837309 | 5.608763e-57 | -8.615850e-47 |
| Msa0529830 | Msa0529890 | 0.814174 | 1.762249e-51 | -8.615850e-47 |
| Msa0529830 | Msa0542090 | 0.814839 | 1.255983e-51 | -8.615850e-47 |
| Msa0529830 | Msa0542130 | 0.812581 | 3.944407e-51 | -8.615850e-47 |
| Msa0529830 | Msa0585510 | 0.889985 | 1.482772e-73 | -8.615850e-47 |
| Msa0529830 | Msa0625680 | 0.828664 | 7.926766e-55 | -8.615850e-47 |
| Msa0529830 | Msa0625720 | 0.812789 | 3.552029e-51 | -8.615850e-47 |
| Msa0529830 | Msa0635550 | 0.806079 | 9.790526e-50 | -8.615850e-47 |
| Msa0529830 | Msa0660490 | 0.855297 | 6.934755e-62 | -8.615850e-47 |
| Msa0529830 | Msa0689260 | 0.849918 | 2.375381e-60 | -8.615850e-47 |
| Msa0529830 | Msa0711780 | 0.825915 | 3.613062e-54 | -8.615850e-47 |
| Msa0529830 | Msa0715700 | 0.848156 | 7.333805e-60 | -8.615850e-47 |
| Msa0529830 | Msa0754380 | 0.811194 | 7.907300e-51 | -8.615850e-47 |
| Msa0529830 | Msa0793800 | 0.825594 | 4.304204e-54 | -8.615850e-47 |
| Msa0529830 | Msa0794670 | 0.813336 | 2.695222e-51 | -8.615850e-47 |
| Msa0529830 | Msa0799260 | 0.805986 | 1.024248e-49 | -8.615850e-47 |
| Msa0529830 | Msa0799310 | 0.803865 | 2.843160e-49 | -8.615850e-47 |
| Msa0529830 | Msa0831530 | 0.814188 | 1.749163e-51 | -8.615850e-47 |
| Msa0529830 | Msa0909950 | 0.805384 | 1.370374e-49 | -8.615850e-47 |
| Msa0529830 | Msa0945440 | 0.803569 | 3.274545e-49 | -8.615850e-47 |
| Msa0529830 | Msa1009820 | 0.817446 | 3.284182e-52 | -8.615850e-47 |
| Msa0529830 | Msa1051200 | 0.838997 | 2.062390e-57 | -8.615850e-47 |
| Msa0529830 | Msa1079440 | 0.803032 | 4.230695e-49 | -8.615850e-47 |
| Msa0529830 | Msa1082810 | 0.815252 | 1.016965e-51 | -8.615850e-47 |
| Msa0529830 | Msa1106700 | 0.810883 | 9.236244e-51 | -8.615850e-47 |
| Msa0529830 | Msa1137700 | 0.838559 | 2.676790e-57 | -8.615850e-47 |
| Msa0529830 | Msa1153060 | 0.831421 | 1.685422e-55 | -8.615850e-47 |
| Msa0529830 | Msa1174470 | 0.830264 | 3.239329e-55 | -8.615850e-47 |
| Msa0529830 | Msa1181250 | 0.807025 | 6.183944e-50 | -8.615850e-47 |
| Msa0529830 | Msa1181330 | 0.811601 | 6.453916e-51 | -8.615850e-47 |
| Msa0529830 | Msa1213480 | 0.837785 | 4.234006e-57 | -8.615850e-47 |
| Msa0529830 | Msa1224810 | 0.809099 | 2.236945e-50 | -8.615850e-47 |
| Msa0529830 | Msa1260320 | 0.830289 | 3.193443e-55 | -8.615850e-47 |
| Msa0529830 | Msa1266990 | 0.829496 | 4.984550e-55 | -8.615850e-47 |
| Msa0529830 | Msa1300380 | 0.834169 | 3.500701e-56 | -8.615850e-47 |
| Msa0529830 | Msa1333010 | 0.820219 | 7.699044e-53 | -8.615850e-47 |
| Msa0529830 | Msa1358250 | 0.848460 | 6.043253e-60 | -8.615850e-47 |
| Msa0529830 | Msa1392780 | 0.841159 | 5.627974e-58 | -8.615850e-47 |
| Msa0529830 | Msa1400220 | 0.803244 | 3.823483e-49 | -8.615850e-47 |
| Msa0529830 | Msa1403420 | 0.898358 | 5.738504e-77 | -8.615850e-47 |
| Msa0529830 | Msa1457920 | 0.834478 | 2.929488e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529830 | MtrunA17_Chr4g0001071 | 89.496 | 238 | 20 | 2 | 1 | 234 | 1 | 237 | 4.38e-149 | 414 |
| Msa0529830 | MtrunA17_Chr1g0149801 | 44.503 | 191 | 102 | 4 | 45 | 233 | 45 | 233 | 2.24e-56 | 179 |
| Msa0529830 | MtrunA17_Chr5g0435861 | 38.506 | 174 | 91 | 4 | 74 | 232 | 82 | 254 | 1.14e-29 | 111 |
| Msa0529830 | MtrunA17_Chr7g0239661 | 33.175 | 211 | 127 | 5 | 33 | 233 | 48 | 254 | 4.74e-29 | 109 |
| Msa0529830 | MtrunA17_Chr5g0444341 | 25.434 | 173 | 111 | 6 | 69 | 234 | 54 | 215 | 1.24e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529830 | AT1G15870.1 | 52.653 | 245 | 102 | 5 | 1 | 234 | 1 | 242 | 6.23e-85 | 253 |
| Msa0529830 | AT1G80720.2 | 53.252 | 246 | 99 | 7 | 1 | 234 | 1 | 242 | 5.91e-81 | 243 |
| Msa0529830 | AT1G80720.1 | 58.763 | 194 | 74 | 4 | 43 | 234 | 1 | 190 | 2.70e-75 | 226 |
| Msa0529830 | AT4G31930.1 | 39.496 | 238 | 135 | 6 | 1 | 233 | 1 | 234 | 1.07e-51 | 167 |
| Msa0529830 | AT2G39795.1 | 29.289 | 239 | 162 | 4 | 2 | 233 | 12 | 250 | 7.42e-27 | 104 |
| Msa0529830 | AT3G55605.1 | 34.146 | 164 | 96 | 3 | 80 | 233 | 97 | 258 | 1.74e-25 | 100 |
| Msa0529830 | AT5G02050.1 | 29.952 | 207 | 130 | 6 | 41 | 233 | 62 | 267 | 2.64e-24 | 97.8 |
| Msa0529830 | AT5G05990.1 | 27.976 | 168 | 106 | 2 | 80 | 232 | 91 | 258 | 7.98e-20 | 85.9 |
| Msa0529830 | AT2G39790.1 | 27.149 | 221 | 146 | 6 | 18 | 232 | 28 | 239 | 1.48e-17 | 79.3 |
| Msa0529830 | AT4G32605.1 | 31.183 | 93 | 59 | 2 | 146 | 233 | 127 | 219 | 9.68e-13 | 65.9 |
Find 71 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTGACCATATTGTATTTA+TGG | 0.150777 | 4_1:+3606837 | Msa0529830:three_prime_UTR |
| AAGATTCTACTTATACTTAT+TGG | 0.165335 | 4_1:+3607061 | Msa0529830:three_prime_UTR |
| TTGGGAGATGTAAGTTCTTC+TGG | 0.225637 | 4_1:-3603287 | None:intergenic |
| CGAAAGCTTCTTTGCGCATT+TGG | 0.227889 | 4_1:-3603306 | None:intergenic |
| CTTGGAGATATTGACAATTA+AGG | 0.236484 | 4_1:-3606136 | None:intergenic |
| ATTTGCCAATGAAAACATTA+AGG | 0.265158 | 4_1:+3606026 | Msa0529830:CDS |
| AATGGGAATTTGGTTGATTA+GGG | 0.289613 | 4_1:-3603215 | None:intergenic |
| GAATGGGAATTTGGTTGATT+AGG | 0.302269 | 4_1:-3603216 | None:intergenic |
| GTTGATTCTTTACAGGGAAT+TGG | 0.305625 | 4_1:+3606517 | Msa0529830:intron |
| CGGACAGTATAGTGATAAAA+AGG | 0.337671 | 4_1:+3606199 | Msa0529830:CDS |
| TTAGAAGTAGAAATTGTATA+AGG | 0.337923 | 4_1:+3606806 | Msa0529830:three_prime_UTR |
| GGATAGTCTTTACGATTTCT+TGG | 0.338117 | 4_1:+3606553 | Msa0529830:CDS |
| GTTGTTGTTGAATGGGAATT+TGG | 0.349399 | 4_1:-3603225 | None:intergenic |
| GTTGAAGCCACCATGTTTGA+TGG | 0.365174 | 4_1:+3606048 | Msa0529830:CDS |
| TTTACGATTTCTTGGAAGTA+AGG | 0.369810 | 4_1:+3606561 | Msa0529830:CDS |
| CGAAACAAACGTGCCATTGC+AGG | 0.372762 | 4_1:-3603178 | None:intergenic |
| CACTCGTTTCTCTTTGGGAA+AGG | 0.378412 | 4_1:-3606877 | None:intergenic |
| GAAAGCTTCTTTGCGCATTT+GGG | 0.378478 | 4_1:-3603305 | None:intergenic |
| ACTCGTTTCTCTTTGGGAAA+GGG | 0.384551 | 4_1:-3606876 | None:intergenic |
| GGAATTGGATGATGAGTTGC+AGG | 0.386849 | 4_1:+3606532 | Msa0529830:CDS |
| TAGATTGATTCATTTCCATT+TGG | 0.404110 | 4_1:+3603116 | None:intergenic |
| AATCATGTGCTCTGCTTGGC+CGG | 0.413847 | 4_1:+3606179 | Msa0529830:CDS |
| AGAAATTGTATAAGGTAAGT+AGG | 0.421027 | 4_1:+3606814 | Msa0529830:three_prime_UTR |
| AATTTCATTACGAAGAAGTC+TGG | 0.426508 | 4_1:-3603341 | None:intergenic |
| TTCGGTTCATTTGTGGTGGA+TGG | 0.428242 | 4_1:+3605967 | Msa0529830:CDS |
| CTCGTTTCTCTTTGGGAAAG+GGG | 0.428306 | 4_1:-3606875 | None:intergenic |
| TGACAAGTTCGGTTCATTTG+TGG | 0.433809 | 4_1:+3605960 | Msa0529830:CDS |
| GCATAGTCGTTGTTGTTGAA+TGG | 0.459987 | 4_1:-3603233 | None:intergenic |
| CTGGAGATGATTTGAGAAGA+AGG | 0.473022 | 4_1:-3603268 | None:intergenic |
| TTGCAGCCTACTGACAAGTT+CGG | 0.474006 | 4_1:+3605949 | Msa0529830:intron |
| AATGTAATCCATCGCTCACC+GGG | 0.484386 | 4_1:-3605994 | None:intergenic |
| AAGTAAACTTACTCAAAGTC+AGG | 0.487021 | 4_1:-3606270 | None:intergenic |
| ACTGAAGTCTATTTCAAAGA+AGG | 0.490124 | 4_1:+3606754 | Msa0529830:three_prime_UTR |
| CAATGTAATCCATCGCTCAC+CGG | 0.493071 | 4_1:-3605995 | None:intergenic |
| TAGGATTTATAATAACCAAA+TGG | 0.496644 | 4_1:-3603131 | None:intergenic |
| CTCAAAGTCAGGACCAGCAT+AGG | 0.500380 | 4_1:-3606259 | None:intergenic |
| CATAGTCGTTGTTGTTGAAT+GGG | 0.501011 | 4_1:-3603232 | None:intergenic |
| CAAGGGAGATGGTCATGTGC+TGG | 0.502080 | 4_1:+3606155 | Msa0529830:CDS |
| CAGCACATGACCATCTCCCT+TGG | 0.512206 | 4_1:-3606154 | None:intergenic |
| AACAGAGATCATAGGATGGA+TGG | 0.515569 | 4_1:+3606640 | Msa0529830:CDS |
| AAGGAGAAAACAGAGATCAT+AGG | 0.519039 | 4_1:+3606632 | Msa0529830:CDS |
| GTCAATATCTCCAAGGGAGA+TGG | 0.521988 | 4_1:+3606144 | Msa0529830:CDS |
| TTACGATTTCTTGGAAGTAA+GGG | 0.523724 | 4_1:+3606562 | Msa0529830:CDS |
| TGGAAATCATGTGCTCTGCT+TGG | 0.524404 | 4_1:+3606175 | Msa0529830:CDS |
| CAAGTTCGGTTCATTTGTGG+TGG | 0.534990 | 4_1:+3605963 | Msa0529830:CDS |
| AAAATACTTACAGGATTGGA+AGG | 0.538098 | 4_1:-3603388 | None:intergenic |
| TACAGGATTGGAAGGAGAAG+AGG | 0.540707 | 4_1:-3603380 | None:intergenic |
| ATGATTTGAGAAGAAGGAGA+AGG | 0.541837 | 4_1:-3603262 | None:intergenic |
| ATGACAGCTGAGCCCTATGC+TGG | 0.544341 | 4_1:+3606246 | Msa0529830:CDS |
| ATGGCCGACCCGGTGAGCGA+TGG | 0.552023 | 4_1:+3605986 | Msa0529830:CDS |
| TTTGTGGTGGATGGCCGACC+CGG | 0.552350 | 4_1:+3605976 | Msa0529830:CDS |
| GAAACAAACGTGCCATTGCA+GGG | 0.563269 | 4_1:-3603177 | None:intergenic |
| CTTAATTGTCAATATCTCCA+AGG | 0.564925 | 4_1:+3606137 | Msa0529830:CDS |
| TCGTTTCTCTTTGGGAAAGG+GGG | 0.565813 | 4_1:-3606874 | None:intergenic |
| TCAAAGTCAGGACCAGCATA+GGG | 0.570818 | 4_1:-3606258 | None:intergenic |
| TTAATTGTCAATATCTCCAA+GGG | 0.571494 | 4_1:+3606138 | Msa0529830:CDS |
| TACGATTTCTTGGAAGTAAG+GGG | 0.573631 | 4_1:+3606563 | Msa0529830:CDS |
| ACAAAAGAGATATGATCTCA+TGG | 0.581216 | 4_1:-3606730 | None:intergenic |
| AATTTCTACTTCTAAAGCAG+TGG | 0.605411 | 4_1:-3606798 | None:intergenic |
| TAATCCATCGCTCACCGGGT+CGG | 0.605600 | 4_1:-3605990 | None:intergenic |
| GGGTTTAGAATCAGAGACAA+GGG | 0.609305 | 4_1:-3603157 | None:intergenic |
| AGAAAACAGAGATCATAGGA+TGG | 0.614854 | 4_1:+3606636 | Msa0529830:CDS |
| AGGAACAGCTCCATCAAACA+TGG | 0.627059 | 4_1:-3606058 | None:intergenic |
| GATCATAGGATGGATGGAGA+AGG | 0.628625 | 4_1:+3606646 | Msa0529830:CDS |
| TAGATAACTGAGTCACAGCA+TGG | 0.638949 | 4_1:-3607145 | None:intergenic |
| TCTGATTCTAAACCCTGCAA+TGG | 0.643238 | 4_1:+3603165 | Msa0529830:exon |
| AATGAACCGAACTTGTCAGT+AGG | 0.644093 | 4_1:-3605955 | None:intergenic |
| AGGGTTTAGAATCAGAGACA+AGG | 0.654566 | 4_1:-3603158 | None:intergenic |
| ATGCGCAAAGAAGCTTTCGA+AGG | 0.659024 | 4_1:+3603310 | Msa0529830:CDS |
| AACAGCTCCATCAAACATGG+TGG | 0.722000 | 4_1:-3606055 | None:intergenic |
| GCATCAGTACATGAAACACA+AGG | 0.733324 | 4_1:+3606613 | Msa0529830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAACTTTTTACTTTTTTTA+AGG | + | chr4_1:3603503-3603522 | Msa0529830:intron | 15.0% |
| !! | AAGATGAAATAAAGTTAAAT+TGG | + | chr4_1:3603721-3603740 | Msa0529830:intron | 15.0% |
| !!! | AAAGCTTAATTTTACAAAAT+CGG | - | chr4_1:3604037-3604056 | None:intergenic | 15.0% |
| !!! | ATTTTGTAAAATTAAGCTTT+AGG | + | chr4_1:3604037-3604056 | Msa0529830:intron | 15.0% |
| !!! | ATATAAAGAATCTTTTTGAT+TGG | - | chr4_1:3604349-3604368 | None:intergenic | 15.0% |
| !!! | TTTATATTTTGTTATAGACA+TGG | + | chr4_1:3604362-3604381 | Msa0529830:intron | 15.0% |
| !!! | CAACTTAATTTTTTAAAATC+AGG | - | chr4_1:3604678-3604697 | None:intergenic | 15.0% |
| !! | TAATGATGATTATAATTAGT+AGG | + | chr4_1:3604840-3604859 | Msa0529830:intron | 15.0% |
| !!! | ATTTTGAAAAATAAAGTTGT+GGG | + | chr4_1:3604990-3605009 | Msa0529830:intron | 15.0% |
| !! | ATACAATCAATTTCAAAATA+CGG | - | chr4_1:3605499-3605518 | None:intergenic | 15.0% |
| !!! | ATGATGTTTTTATTTCTAAA+AGG | + | chr4_1:3605763-3605782 | Msa0529830:intron | 15.0% |
| !! | TAGGATTTATAATAACCAAA+TGG | - | chr4_1:3603134-3603153 | None:intergenic | 20.0% |
| !! | AAAAAAAATACTTACAGGAT+TGG | - | chr4_1:3603395-3603414 | None:intergenic | 20.0% |
| !! | AGAGAAAAAAAAATACTTAC+AGG | - | chr4_1:3603400-3603419 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTAAGGTAGTT+TGG | + | chr4_1:3603511-3603530 | Msa0529830:intron | 20.0% |
| !! | TTATGAAAATAAGCTCAAAA+CGG | + | chr4_1:3603787-3603806 | Msa0529830:intron | 20.0% |
| !!! | TTTGGAATAACTTAAGAAAA+CGG | - | chr4_1:3603871-3603890 | None:intergenic | 20.0% |
| !!! | AGTTAAACTGTTTTTTGTAT+AGG | + | chr4_1:3604182-3604201 | Msa0529830:intron | 20.0% |
| !!! | AATTTTTTAAAATCAGGCAT+GGG | - | chr4_1:3604672-3604691 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAAAATCAGGCA+TGG | - | chr4_1:3604673-3604692 | None:intergenic | 20.0% |
| !!! | CAACTTTATTTTTCAAAATC+AGG | - | chr4_1:3604989-3605008 | None:intergenic | 20.0% |
| !!! | GATTTTGAAAAATAAAGTTG+TGG | + | chr4_1:3604989-3605008 | Msa0529830:intron | 20.0% |
| !!! | TTTAGCTTTTTCCTAAATAT+CGG | + | chr4_1:3605034-3605053 | Msa0529830:intron | 20.0% |
| !!! | TAGAATATTTAGAGTTTGTT+TGG | + | chr4_1:3605069-3605088 | Msa0529830:intron | 20.0% |
| !!! | TAATTTTACAAAATCAGGTA+TGG | - | chr4_1:3605235-3605254 | None:intergenic | 20.0% |
| !!! | CAACTTAATTTTACAAAATC+AGG | - | chr4_1:3605240-3605259 | None:intergenic | 20.0% |
| !!! | AGTAGCTCTAAATATTTTAT+TGG | - | chr4_1:3605387-3605406 | None:intergenic | 20.0% |
| !!! | CCAAAATAGTATATTTTCAT+CGG | - | chr4_1:3605455-3605474 | None:intergenic | 20.0% |
| !!! | ACTATTGCATAATAGAATTT+TGG | + | chr4_1:3606455-3606474 | Msa0529830:intron | 20.0% |
| !! | TTAGAAGTAGAAATTGTATA+AGG | + | chr4_1:3606806-3606825 | Msa0529830:three_prime_UTR | 20.0% |
| !! | CAAAAACCATAAATACAATA+TGG | - | chr4_1:3606846-3606865 | None:intergenic | 20.0% |
| !! | AAGATTCTACTTATACTTAT+TGG | + | chr4_1:3607061-3607080 | Msa0529830:three_prime_UTR | 20.0% |
| !!! | GATTTTAATTTCCCTGTTTT+TGG | + | chr4_1:3603619-3603638 | Msa0529830:intron | 25.0% |
| ! | AAGTTGTTTATCCAAAAACA+GGG | - | chr4_1:3603633-3603652 | None:intergenic | 25.0% |
| ! | TAAGTTGTTTATCCAAAAAC+AGG | - | chr4_1:3603634-3603653 | None:intergenic | 25.0% |
| ! | ATAAGCAATTGGAAATTGTT+TGG | - | chr4_1:3603889-3603908 | None:intergenic | 25.0% |
| !! | ACTTATTTGAGTTTATCTAC+TGG | - | chr4_1:3603913-3603932 | None:intergenic | 25.0% |
| !!! | TTAGCTTTTTCCTAAAAATC+AGG | + | chr4_1:3604081-3604100 | Msa0529830:intron | 25.0% |
| ! | AACATCTTGTGTAAAAAACA+AGG | + | chr4_1:3604526-3604545 | Msa0529830:intron | 25.0% |
| ! | ACATCTTGTGTAAAAAACAA+GGG | + | chr4_1:3604527-3604546 | Msa0529830:intron | 25.0% |
| ! | TAAGACTCTGTTTGAATAAA+GGG | - | chr4_1:3604591-3604610 | None:intergenic | 25.0% |
| !!! | AACTTAACTTGCTATAGATA+TGG | + | chr4_1:3604879-3604898 | Msa0529830:intron | 25.0% |
| ! | ATTCAGATTAAGACAATAGT+TGG | - | chr4_1:3604946-3604965 | None:intergenic | 25.0% |
| !! | GTCTTAATCTGAATGTTTTT+AGG | + | chr4_1:3604952-3604971 | Msa0529830:intron | 25.0% |
| !!! | TTAGCTTTTTCCTAAATATC+GGG | + | chr4_1:3605035-3605054 | Msa0529830:intron | 25.0% |
| ! | AGTTGAAATTGAATGGATAA+TGG | + | chr4_1:3605174-3605193 | Msa0529830:intron | 25.0% |
| !! | TTTTCTTATCATGGTAGAAA+GGG | + | chr4_1:3605198-3605217 | Msa0529830:intron | 25.0% |
| ! | TGATTATTAGGAAGAAACTA+CGG | - | chr4_1:3605287-3605306 | None:intergenic | 25.0% |
| ! | TAGTTTCTTCCTAATAATCA+GGG | + | chr4_1:3605287-3605306 | Msa0529830:intron | 25.0% |
| !! | CCGATGAAAATATACTATTT+TGG | + | chr4_1:3605452-3605471 | Msa0529830:intron | 25.0% |
| ! | TCAAAATACGGTTATAAAAG+TGG | - | chr4_1:3605487-3605506 | None:intergenic | 25.0% |
| ! | TAGTTAGAACTAGAGTTAAA+GGG | - | chr4_1:3605538-3605557 | None:intergenic | 25.0% |
| ! | TTAGTTAGAACTAGAGTTAA+AGG | - | chr4_1:3605539-3605558 | None:intergenic | 25.0% |
| !!! | TTGAAGACTTGATATTTTGA+TGG | + | chr4_1:3605730-3605749 | Msa0529830:intron | 25.0% |
| ! | TCTTGTAGACATGAATAATT+AGG | + | chr4_1:3605913-3605932 | Msa0529830:intron | 25.0% |
| ! | CTTGTAGACATGAATAATTA+GGG | + | chr4_1:3605914-3605933 | Msa0529830:intron | 25.0% |
| ! | ATTTGCCAATGAAAACATTA+AGG | + | chr4_1:3606026-3606045 | Msa0529830:CDS | 25.0% |
| !! | TTCAACCTTAATGTTTTCAT+TGG | - | chr4_1:3606034-3606053 | None:intergenic | 25.0% |
| ! | TTAATTGTCAATATCTCCAA+GGG | + | chr4_1:3606138-3606157 | Msa0529830:CDS | 25.0% |
| ! | TGATACCATTTGTTCAAATT+CGG | - | chr4_1:3606378-3606397 | None:intergenic | 25.0% |
| ! | TGTAAAGAATCAACATTAAG+AGG | - | chr4_1:3606511-3606530 | None:intergenic | 25.0% |
| !!! | TCTTAATGTTGATTCTTTAC+AGG | + | chr4_1:3606510-3606529 | Msa0529830:intron | 25.0% |
| !!! | CTTAATGTTGATTCTTTACA+GGG | + | chr4_1:3606511-3606530 | Msa0529830:intron | 25.0% |
| ! | AGAAATTGTATAAGGTAAGT+AGG | + | chr4_1:3606814-3606833 | Msa0529830:three_prime_UTR | 25.0% |
| ! | AAGTGACCATATTGTATTTA+TGG | + | chr4_1:3606837-3606856 | Msa0529830:three_prime_UTR | 25.0% |
| !! | TGTATTTATGGTTTTTGCTT+CGG | + | chr4_1:3606849-3606868 | Msa0529830:three_prime_UTR | 25.0% |
| !! | ATGTCAGAAACTATCTTTTA+TGG | + | chr4_1:3606905-3606924 | Msa0529830:three_prime_UTR | 25.0% |
| !! | TTTTATGGAAGGTTTATTCT+CGG | + | chr4_1:3606920-3606939 | Msa0529830:three_prime_UTR | 25.0% |
| !! | CTGTTTTGTCAATTAAATCA+AGG | - | chr4_1:3607121-3607140 | None:intergenic | 25.0% |
| ! | TTTGGTTGATTAGGGTTTTT+CGG | - | chr4_1:3603210-3603229 | None:intergenic | 30.0% |
| AATGGGAATTTGGTTGATTA+GGG | - | chr4_1:3603218-3603237 | None:intergenic | 30.0% | |
| AATTTCATTACGAAGAAGTC+TGG | - | chr4_1:3603344-3603363 | None:intergenic | 30.0% | |
| AAAATACTTACAGGATTGGA+AGG | - | chr4_1:3603391-3603410 | None:intergenic | 30.0% | |
| !! | TTCTCTTGTTGTTTGTGTAA+TGG | + | chr4_1:3603414-3603433 | Msa0529830:intron | 30.0% |
| !! | TCTCTTGTTGTTTGTGTAAT+GGG | + | chr4_1:3603415-3603434 | Msa0529830:intron | 30.0% |
| !!! | TGTGTAATGGGTTTTTGTTA+TGG | + | chr4_1:3603427-3603446 | Msa0529830:intron | 30.0% |
| !!! | GTGTAATGGGTTTTTGTTAT+GGG | + | chr4_1:3603428-3603447 | Msa0529830:intron | 30.0% |
| !! | GGTTTTTGTTATGGGAAAAT+GGG | + | chr4_1:3603436-3603455 | Msa0529830:intron | 30.0% |
| CTTTGTTCTTGTTAGAATCA+TGG | + | chr4_1:3603472-3603491 | Msa0529830:intron | 30.0% | |
| AAATAAGCTCAAAACGGTTT+AGG | + | chr4_1:3603793-3603812 | Msa0529830:intron | 30.0% | |
| AAAACGGCTTATGACTTATA+CGG | - | chr4_1:3603855-3603874 | None:intergenic | 30.0% | |
| TATCTACTGGTATAAGCAAT+TGG | - | chr4_1:3603900-3603919 | None:intergenic | 30.0% | |
| CGTCTATTACAAAAGATGAA+GGG | - | chr4_1:3603949-3603968 | None:intergenic | 30.0% | |
| ACGTCTATTACAAAAGATGA+AGG | - | chr4_1:3603950-3603969 | None:intergenic | 30.0% | |
| ATTCAGATGAAGACAATGTT+AGG | - | chr4_1:3603996-3604015 | None:intergenic | 30.0% | |
| ! | CAAAATATTTGGAGCTAGTT+TGG | + | chr4_1:3604115-3604134 | Msa0529830:intron | 30.0% |
| ATTCAAACAGAGTCTTAAAG+TGG | + | chr4_1:3604439-3604458 | Msa0529830:intron | 30.0% | |
| TTCAAACAGAGTCTTAAAGT+GGG | + | chr4_1:3604440-3604459 | Msa0529830:intron | 30.0% | |
| ! | TTTTTACACAAGATGTTTCC+AGG | - | chr4_1:3604523-3604542 | None:intergenic | 30.0% |
| CTAAGACTCTGTTTGAATAA+AGG | - | chr4_1:3604592-3604611 | None:intergenic | 30.0% | |
| CTTCTTCCTAAAATGTGTTT+AGG | + | chr4_1:3604641-3604660 | Msa0529830:intron | 30.0% | |
| AGTTATGAAACCCGATATTT+AGG | - | chr4_1:3605048-3605067 | None:intergenic | 30.0% | |
| TTTGTTTGGATAAACTGTTG+TGG | + | chr4_1:3605083-3605102 | Msa0529830:intron | 30.0% | |
| TCTCAGAAGTTGAAATTGAA+TGG | + | chr4_1:3605167-3605186 | Msa0529830:intron | 30.0% | |
| !! | GATAATGGCTTTTCTTATCA+TGG | + | chr4_1:3605189-3605208 | Msa0529830:intron | 30.0% |
| ! | CTTTTCTTATCATGGTAGAA+AGG | + | chr4_1:3605197-3605216 | Msa0529830:intron | 30.0% |
| GTAGTTTCTTCCTAATAATC+AGG | + | chr4_1:3605286-3605305 | Msa0529830:intron | 30.0% | |
| AGTTTCTTCCTAATAATCAG+GGG | + | chr4_1:3605288-3605307 | Msa0529830:intron | 30.0% | |
| CTTAATTGTGTAAACTGTTG+TGG | + | chr4_1:3605405-3605424 | Msa0529830:intron | 30.0% | |
| !!! | CCAAGTTTGTTTTAGATTCT+AGG | - | chr4_1:3605681-3605700 | None:intergenic | 30.0% |
| ! | CCTAGAATCTAAAACAAACT+TGG | + | chr4_1:3605678-3605697 | Msa0529830:intron | 30.0% |
| !!! | ATTCTCTAGCTTTTTTCAGT+TGG | + | chr4_1:3605874-3605893 | Msa0529830:intron | 30.0% |
| !!! | AGCTTTTTTCAGTTGGATTT+TGG | + | chr4_1:3605881-3605900 | Msa0529830:intron | 30.0% |
| CTTGGAGATATTGACAATTA+AGG | - | chr4_1:3606139-3606158 | None:intergenic | 30.0% | |
| CTTAATTGTCAATATCTCCA+AGG | + | chr4_1:3606137-3606156 | Msa0529830:CDS | 30.0% | |
| ! | CTTTTTATCACTATACTGTC+CGG | - | chr4_1:3606201-3606220 | None:intergenic | 30.0% |
| AAGTAAACTTACTCAAAGTC+AGG | - | chr4_1:3606273-3606292 | None:intergenic | 30.0% | |
| TATAGCCGAATTTGAACAAA+TGG | + | chr4_1:3606370-3606389 | Msa0529830:intron | 30.0% | |
| ATGCGCTATTTAGTACAAAA+TGG | + | chr4_1:3606412-3606431 | Msa0529830:intron | 30.0% | |
| ! | TACAAAATGGTGTCAAATAG+AGG | + | chr4_1:3606425-3606444 | Msa0529830:intron | 30.0% |
| TTTACGATTTCTTGGAAGTA+AGG | + | chr4_1:3606561-3606580 | Msa0529830:CDS | 30.0% | |
| TTACGATTTCTTGGAAGTAA+GGG | + | chr4_1:3606562-3606581 | Msa0529830:CDS | 30.0% | |
| ACAAAAGAGATATGATCTCA+TGG | - | chr4_1:3606733-3606752 | None:intergenic | 30.0% | |
| ACTGAAGTCTATTTCAAAGA+AGG | + | chr4_1:3606754-3606773 | Msa0529830:three_prime_UTR | 30.0% | |
| !! | AATTTCTACTTCTAAAGCAG+TGG | - | chr4_1:3606801-3606820 | None:intergenic | 30.0% |
| ! | CAGAAACTATCTTTTATGGA+AGG | + | chr4_1:3606909-3606928 | Msa0529830:three_prime_UTR | 30.0% |
| GAATGGGAATTTGGTTGATT+AGG | - | chr4_1:3603219-3603238 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGAATGGGAATT+TGG | - | chr4_1:3603228-3603247 | None:intergenic | 35.0% |
| ! | CATAGTCGTTGTTGTTGAAT+GGG | - | chr4_1:3603235-3603254 | None:intergenic | 35.0% |
| ATGATTTGAGAAGAAGGAGA+AGG | - | chr4_1:3603265-3603284 | None:intergenic | 35.0% | |
| !! | GGGTTTTTGTTATGGGAAAA+TGG | + | chr4_1:3603435-3603454 | Msa0529830:intron | 35.0% |
| TTGCATAAGCTAAACTCTCT+TGG | + | chr4_1:3603559-3603578 | Msa0529830:intron | 35.0% | |
| ATAAGCTAAACTCTCTTGGA+TGG | + | chr4_1:3603563-3603582 | Msa0529830:intron | 35.0% | |
| !! | GCTTTAGGATAAAGCTACAT+TGG | + | chr4_1:3604052-3604071 | Msa0529830:intron | 35.0% |
| CGTCGTAGCTACAAAATATT+TGG | + | chr4_1:3604104-3604123 | Msa0529830:intron | 35.0% | |
| ! | ATAAGCACTTGGAGACTTTT+TGG | - | chr4_1:3604303-3604322 | None:intergenic | 35.0% |
| TATCTACCAACATAAGCACT+TGG | - | chr4_1:3604314-3604333 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACAAGGGA+AGG | + | chr4_1:3604531-3604550 | Msa0529830:intron | 35.0% | |
| ! | GAAGCTCCTAAACACATTTT+AGG | - | chr4_1:3604650-3604669 | None:intergenic | 35.0% |
| ! | TTTAGCTTCTTCCTACAATC+AGG | + | chr4_1:3604722-3604741 | Msa0529830:intron | 35.0% |
| TAGCTATGAAACCTGATTGT+AGG | - | chr4_1:3604736-3604755 | None:intergenic | 35.0% | |
| CAGGTTTCATAGCTACAAAA+TGG | + | chr4_1:3604741-3604760 | Msa0529830:intron | 35.0% | |
| ! | TACAAAATGGTTAGCTAGTG+CGG | + | chr4_1:3604754-3604773 | Msa0529830:intron | 35.0% |
| TTATCATGGTAGAAAGGGTA+AGG | + | chr4_1:3605203-3605222 | Msa0529830:intron | 35.0% | |
| ! | CTAGTTTGTGTAAACTGTTG+TGG | + | chr4_1:3605334-3605353 | Msa0529830:intron | 35.0% |
| GTAAACACAAACAGTGCATT+TGG | - | chr4_1:3605710-3605729 | None:intergenic | 35.0% | |
| TCTTTGCAACTAGTATCGTT+TGG | + | chr4_1:3605847-3605866 | Msa0529830:intron | 35.0% | |
| CTTTGCAACTAGTATCGTTT+GGG | + | chr4_1:3605848-3605867 | Msa0529830:intron | 35.0% | |
| TTTGCAACTAGTATCGTTTG+GGG | + | chr4_1:3605849-3605868 | Msa0529830:intron | 35.0% | |
| CGGACAGTATAGTGATAAAA+AGG | + | chr4_1:3606199-3606218 | Msa0529830:CDS | 35.0% | |
| TTGTACTAAATAGCGCATCA+CGG | - | chr4_1:3606410-3606429 | None:intergenic | 35.0% | |
| ! | GTTGATTCTTTACAGGGAAT+TGG | + | chr4_1:3606517-3606536 | Msa0529830:intron | 35.0% |
| GGATAGTCTTTACGATTTCT+TGG | + | chr4_1:3606553-3606572 | Msa0529830:CDS | 35.0% | |
| TACGATTTCTTGGAAGTAAG+GGG | + | chr4_1:3606563-3606582 | Msa0529830:CDS | 35.0% | |
| AAGGAGAAAACAGAGATCAT+AGG | + | chr4_1:3606632-3606651 | Msa0529830:CDS | 35.0% | |
| AGAAAACAGAGATCATAGGA+TGG | + | chr4_1:3606636-3606655 | Msa0529830:CDS | 35.0% | |
| ! | GTTTTCACTCGTTTCTCTTT+GGG | - | chr4_1:3606885-3606904 | None:intergenic | 35.0% |
| ! | TGTTTTCACTCGTTTCTCTT+TGG | - | chr4_1:3606886-3606905 | None:intergenic | 35.0% |
| ! | GAATCAGAGACAAGGGTTTT+AGG | - | chr4_1:3603153-3603172 | None:intergenic | 40.0% |
| ! | GGGTTTAGAATCAGAGACAA+GGG | - | chr4_1:3603160-3603179 | None:intergenic | 40.0% |
| ! | AGGGTTTAGAATCAGAGACA+AGG | - | chr4_1:3603161-3603180 | None:intergenic | 40.0% |
| TCTGATTCTAAACCCTGCAA+TGG | + | chr4_1:3603165-3603184 | Msa0529830:exon | 40.0% | |
| ! | GCATAGTCGTTGTTGTTGAA+TGG | - | chr4_1:3603236-3603255 | None:intergenic | 40.0% |
| CTGGAGATGATTTGAGAAGA+AGG | - | chr4_1:3603271-3603290 | None:intergenic | 40.0% | |
| TTGGGAGATGTAAGTTCTTC+TGG | - | chr4_1:3603290-3603309 | None:intergenic | 40.0% | |
| GAAAGCTTCTTTGCGCATTT+GGG | - | chr4_1:3603308-3603327 | None:intergenic | 40.0% | |
| ! | GAGCTAGTTTGGAAAAACTG+AGG | + | chr4_1:3604126-3604145 | Msa0529830:intron | 40.0% |
| CTAGTTTGGAAAAACTGAGG+TGG | + | chr4_1:3604129-3604148 | Msa0529830:intron | 40.0% | |
| AAGTCTCCAAGTGCTTATGT+TGG | + | chr4_1:3604305-3604324 | Msa0529830:intron | 40.0% | |
| AATACACCAATTAGTGCACC+AGG | + | chr4_1:3604562-3604581 | Msa0529830:intron | 40.0% | |
| AATGAACCGAACTTGTCAGT+AGG | - | chr4_1:3605958-3605977 | None:intergenic | 40.0% | |
| TGACAAGTTCGGTTCATTTG+TGG | + | chr4_1:3605960-3605979 | Msa0529830:CDS | 40.0% | |
| GCATCAGTACATGAAACACA+AGG | + | chr4_1:3606613-3606632 | Msa0529830:CDS | 40.0% | |
| AACAGAGATCATAGGATGGA+TGG | + | chr4_1:3606640-3606659 | Msa0529830:CDS | 40.0% | |
| ! | ACTCGTTTCTCTTTGGGAAA+GGG | - | chr4_1:3606879-3606898 | None:intergenic | 40.0% |
| TAGATAACTGAGTCACAGCA+TGG | - | chr4_1:3607148-3607167 | None:intergenic | 40.0% | |
| ! | GAAACAAACGTGCCATTGCA+GGG | - | chr4_1:3603180-3603199 | None:intergenic | 45.0% |
| CGAAAGCTTCTTTGCGCATT+TGG | - | chr4_1:3603309-3603328 | None:intergenic | 45.0% | |
| ATGCGCAAAGAAGCTTTCGA+AGG | + | chr4_1:3603310-3603329 | Msa0529830:CDS | 45.0% | |
| TACAGGATTGGAAGGAGAAG+AGG | - | chr4_1:3603383-3603402 | None:intergenic | 45.0% | |
| ! | AGCTACGACGCCTGATTTTT+AGG | - | chr4_1:3604094-3604113 | None:intergenic | 45.0% |
| GAGTCTTAAAGTGGGAACCT+TGG | + | chr4_1:3604448-3604467 | Msa0529830:intron | 45.0% | |
| ! | CTTGTTGTCACGTGACTGAA+AGG | + | chr4_1:3604483-3604502 | Msa0529830:intron | 45.0% |
| TGTTTGAATAAAGGGCAGCC+TGG | - | chr4_1:3604583-3604602 | None:intergenic | 45.0% | |
| TTCCTAATAATCAGGGGTCG+TGG | + | chr4_1:3605294-3605313 | Msa0529830:intron | 45.0% | |
| TTGCAGCCTACTGACAAGTT+CGG | + | chr4_1:3605949-3605968 | Msa0529830:intron | 45.0% | |
| CAAGTTCGGTTCATTTGTGG+TGG | + | chr4_1:3605963-3605982 | Msa0529830:CDS | 45.0% | |
| ! | TTCGGTTCATTTGTGGTGGA+TGG | + | chr4_1:3605967-3605986 | Msa0529830:CDS | 45.0% |
| AATGTAATCCATCGCTCACC+GGG | - | chr4_1:3605997-3606016 | None:intergenic | 45.0% | |
| CAATGTAATCCATCGCTCAC+CGG | - | chr4_1:3605998-3606017 | None:intergenic | 45.0% | |
| GTTGAAGCCACCATGTTTGA+TGG | + | chr4_1:3606048-3606067 | Msa0529830:CDS | 45.0% | |
| AACAGCTCCATCAAACATGG+TGG | - | chr4_1:3606058-3606077 | None:intergenic | 45.0% | |
| AGGAACAGCTCCATCAAACA+TGG | - | chr4_1:3606061-3606080 | None:intergenic | 45.0% | |
| GTTCCTGCTCCGAAAAAAAG+CGG | + | chr4_1:3606075-3606094 | Msa0529830:CDS | 45.0% | |
| GTCAATATCTCCAAGGGAGA+TGG | + | chr4_1:3606144-3606163 | Msa0529830:CDS | 45.0% | |
| TGGAAATCATGTGCTCTGCT+TGG | + | chr4_1:3606175-3606194 | Msa0529830:CDS | 45.0% | |
| TCAAAGTCAGGACCAGCATA+GGG | - | chr4_1:3606261-3606280 | None:intergenic | 45.0% | |
| GGAATTGGATGATGAGTTGC+AGG | + | chr4_1:3606532-3606551 | Msa0529830:CDS | 45.0% | |
| GATCATAGGATGGATGGAGA+AGG | + | chr4_1:3606646-3606665 | Msa0529830:CDS | 45.0% | |
| ! | TCGTTTCTCTTTGGGAAAGG+GGG | - | chr4_1:3606877-3606896 | None:intergenic | 45.0% |
| ! | CTCGTTTCTCTTTGGGAAAG+GGG | - | chr4_1:3606878-3606897 | None:intergenic | 45.0% |
| ! | CACTCGTTTCTCTTTGGGAA+AGG | - | chr4_1:3606880-3606899 | None:intergenic | 45.0% |
| ! | CGAAACAAACGTGCCATTGC+AGG | - | chr4_1:3603181-3603200 | None:intergenic | 50.0% |
| ACAAGTTTACCGTTGCGCCA+AGG | - | chr4_1:3604468-3604487 | None:intergenic | 50.0% | |
| AGCCACGACCCCTGATTATT+AGG | - | chr4_1:3605299-3605318 | None:intergenic | 50.0% | |
| TCCGAAAAAAAGCGGTGGTG+TGG | + | chr4_1:3606083-3606102 | Msa0529830:CDS | 50.0% | |
| !!! | GCCACACCACCGCTTTTTTT+CGG | - | chr4_1:3606087-3606106 | None:intergenic | 50.0% |
| AATCATGTGCTCTGCTTGGC+CGG | + | chr4_1:3606179-3606198 | Msa0529830:CDS | 50.0% | |
| CTCAAAGTCAGGACCAGCAT+AGG | - | chr4_1:3606262-3606281 | None:intergenic | 50.0% | |
| AAGTGGGAACCTTGGCGCAA+CGG | + | chr4_1:3604456-3604475 | Msa0529830:intron | 55.0% | |
| CACGTGACTGAAAGGTCACG+AGG | + | chr4_1:3604491-3604510 | Msa0529830:intron | 55.0% | |
| AAGGTCACGAGGTCAAGTCC+TGG | + | chr4_1:3604502-3604521 | Msa0529830:intron | 55.0% | |
| TAATCCATCGCTCACCGGGT+CGG | - | chr4_1:3605993-3606012 | None:intergenic | 55.0% | |
| !!! | CCACCGCTTTTTTTCGGAGC+AGG | - | chr4_1:3606081-3606100 | None:intergenic | 55.0% |
| CCTGCTCCGAAAAAAAGCGG+TGG | + | chr4_1:3606078-3606097 | Msa0529830:CDS | 55.0% | |
| CAGCACATGACCATCTCCCT+TGG | - | chr4_1:3606157-3606176 | None:intergenic | 55.0% | |
| CAAGGGAGATGGTCATGTGC+TGG | + | chr4_1:3606155-3606174 | Msa0529830:CDS | 55.0% | |
| ATGACAGCTGAGCCCTATGC+TGG | + | chr4_1:3606246-3606265 | Msa0529830:CDS | 55.0% | |
| GGGCAGCCTGGTGCACTAAT+TGG | - | chr4_1:3604571-3604590 | None:intergenic | 60.0% | |
| !! | TTTGTGGTGGATGGCCGACC+CGG | + | chr4_1:3605976-3605995 | Msa0529830:CDS | 60.0% |
| ATGGCCGACCCGGTGAGCGA+TGG | + | chr4_1:3605986-3606005 | Msa0529830:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 3603118 | 3607175 | 3603118 | ID=Msa0529830;Name=Msa0529830 |
| chr4_1 | mRNA | 3603118 | 3607175 | 3603118 | ID=Msa0529830-mRNA-1;Parent=Msa0529830;Name=Msa0529830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|3|481|234 |
| chr4_1 | exon | 3603118 | 3603399 | 3603118 | ID=Msa0529830-mRNA-1:exon:1059;Parent=Msa0529830-mRNA-1 |
| chr4_1 | exon | 3605955 | 3606280 | 3605955 | ID=Msa0529830-mRNA-1:exon:1060;Parent=Msa0529830-mRNA-1 |
| chr4_1 | exon | 3606532 | 3607175 | 3606532 | ID=Msa0529830-mRNA-1:exon:1061;Parent=Msa0529830-mRNA-1 |
| chr4_1 | five_prime_UTR | 3603118 | 3603183 | 3603118 | ID=Msa0529830-mRNA-1:five_prime_utr;Parent=Msa0529830-mRNA-1 |
| chr4_1 | CDS | 3603184 | 3603399 | 3603184 | ID=Msa0529830-mRNA-1:cds;Parent=Msa0529830-mRNA-1 |
| chr4_1 | CDS | 3605955 | 3606280 | 3605955 | ID=Msa0529830-mRNA-1:cds;Parent=Msa0529830-mRNA-1 |
| chr4_1 | CDS | 3606532 | 3606694 | 3606532 | ID=Msa0529830-mRNA-1:cds;Parent=Msa0529830-mRNA-1 |
| chr4_1 | three_prime_UTR | 3606695 | 3607175 | 3606695 | ID=Msa0529830-mRNA-1:three_prime_utr;Parent=Msa0529830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
