Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881070 | XP_003610262.1 | 98.006 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881070 | sp|Q24JJ9|NUP43_ARATH | 59.664 | 357 | 125 | 6 | 8 | 350 | 9 | 360 | 1.64e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881070 | G7JFH6 | 98.006 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0449210 | Msa0881070 | 0.809196 | 2.132248e-50 | -8.615850e-47 |
| Msa0532070 | Msa0881070 | 0.810530 | 1.101173e-50 | -8.615850e-47 |
| Msa0876800 | Msa0881070 | 0.814509 | 1.486190e-51 | -8.615850e-47 |
| Msa0881070 | Msa0979060 | 0.812486 | 4.138698e-51 | -8.615850e-47 |
| Msa0881070 | Msa1079440 | 0.819041 | 1.430194e-52 | -8.615850e-47 |
| Msa0881070 | Msa1215580 | 0.818449 | 1.948515e-52 | -8.615850e-47 |
| Msa0881070 | Msa1222370 | 0.959000 | 5.812547e-117 | -8.615850e-47 |
| Msa0881070 | Msa1404870 | 0.815481 | 9.043855e-52 | -8.615850e-47 |
| Msa0881070 | Msa1406570 | 0.996129 | 9.615095e-224 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881070 | MtrunA17_Chr4g0073531 | 98.006 | 351 | 7 | 0 | 1 | 351 | 1 | 351 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881070 | AT4G30840.1 | 59.664 | 357 | 125 | 6 | 8 | 350 | 9 | 360 | 1.67e-143 | 410 |
Find 131 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCATTTATTTGCAAATT+TGG | 0.052006 | 6_1:-28051824 | Msa0881070:three_prime_UTR |
| TGGACCTGTTTCTCAGTTTA+AGG | 0.171125 | 6_1:-28054189 | Msa0881070:CDS |
| ATTAGTATGAAAATGGATTT+TGG | 0.204144 | 6_1:-28051909 | Msa0881070:three_prime_UTR |
| TAAAGCCATTAGTATGAAAA+TGG | 0.210501 | 6_1:-28051916 | Msa0881070:three_prime_UTR |
| TTTCTCAGTTTAAGGGTAAT+TGG | 0.233378 | 6_1:-28054181 | Msa0881070:intron |
| CTTTCGAATTCCAATCTTCA+TGG | 0.235878 | 6_1:-28054604 | Msa0881070:CDS |
| GGATGATGGGAAGGTGAATT+TGG | 0.249012 | 6_1:-28054363 | Msa0881070:CDS |
| ATGTTATTGTCTTGTCAATA+TGG | 0.252900 | 6_1:+28052073 | None:intergenic |
| CTAGACTATGCGCGAATTGC+AGG | 0.286349 | 6_1:-28054833 | Msa0881070:five_prime_UTR |
| TTGCATTTATTTGCAAATTT+GGG | 0.308084 | 6_1:-28051823 | Msa0881070:three_prime_UTR |
| GCATAGTCTAGTGAGGAAAA+TGG | 0.313592 | 6_1:+28054845 | None:intergenic |
| CAACAACCGATTATACTTTC+AGG | 0.318334 | 6_1:-28052711 | Msa0881070:CDS |
| GCTACTGGTGGGTATGGATT+TGG | 0.325102 | 6_1:-28054242 | Msa0881070:CDS |
| TCTCAGGCTGCTGGCTCCTT+AGG | 0.338414 | 6_1:-28052765 | Msa0881070:intron |
| AATTCGAAAGAGAGTGGATT+TGG | 0.343817 | 6_1:+28054617 | None:intergenic |
| TGGCTCCTTAGGTACTGTTT+TGG | 0.346745 | 6_1:-28052754 | Msa0881070:CDS |
| TTTCTTATACGTCAGTGAAA+TGG | 0.356506 | 6_1:-28054283 | Msa0881070:CDS |
| GGTATGGATTTGGTCTTCAT+TGG | 0.362645 | 6_1:-28054232 | Msa0881070:CDS |
| TGTTCGGAGGATGGAATTCT+TGG | 0.363425 | 6_1:-28052558 | Msa0881070:CDS |
| TAGATACTCTATGAGACTTA+AGG | 0.374668 | 6_1:+28051701 | None:intergenic |
| GGTTCTGCCAGCAGCTCAAT+AGG | 0.375269 | 6_1:+28052418 | None:intergenic |
| TGTGTTACTGTTGGGGATGA+TGG | 0.376446 | 6_1:-28054377 | Msa0881070:CDS |
| TTCTTATACGTCAGTGAAAT+GGG | 0.381312 | 6_1:-28054282 | Msa0881070:CDS |
| ATCAATATCAAAGCTATTGA+TGG | 0.381344 | 6_1:+28052390 | None:intergenic |
| ATGGATTTGGTCTTCATTGG+TGG | 0.382216 | 6_1:-28054229 | Msa0881070:CDS |
| GGGTTGAGTGTGTTACTGTT+GGG | 0.384462 | 6_1:-28054385 | Msa0881070:CDS |
| GATTTCGATGGAAGAGAGAT+TGG | 0.389652 | 6_1:+28054652 | None:intergenic |
| TGTATCTGAGGTATCTGTTT+CGG | 0.394410 | 6_1:-28054459 | Msa0881070:CDS |
| GCCGTCACTGCCATTGCAAA+AGG | 0.394520 | 6_1:+28054788 | None:intergenic |
| TATCGTAAATTGTTTGATAG+TGG | 0.394791 | 6_1:-28054314 | Msa0881070:CDS |
| GTGGATTTGGTTTGAAAGAG+TGG | 0.395902 | 6_1:+28054630 | None:intergenic |
| GAAGTGTTGCATTGATTTGA+TGG | 0.396062 | 6_1:-28054414 | Msa0881070:CDS |
| GGGGTTGAGTGTGTTACTGT+TGG | 0.397372 | 6_1:-28054386 | Msa0881070:CDS |
| GGACCTGTTTCTCAGTTTAA+GGG | 0.397416 | 6_1:-28054188 | Msa0881070:CDS |
| AATATCTGAAAGTGAGGTTT+GGG | 0.399294 | 6_1:-28052646 | Msa0881070:CDS |
| TTTGTAGCTGATGGAAGAAC+TGG | 0.403878 | 6_1:-28051992 | Msa0881070:three_prime_UTR |
| TGATTGATTTCTGAAGGAAC+TGG | 0.403888 | 6_1:+28054546 | None:intergenic |
| TTACCCTTAAACTGAGAAAC+AGG | 0.414892 | 6_1:+28054185 | None:intergenic |
| TTACAAAAGAACAATACATT+TGG | 0.415390 | 6_1:+28051936 | None:intergenic |
| AGACAAGTATGCTTTCTTGA+TGG | 0.424181 | 6_1:+28053738 | None:intergenic |
| CCTGTTCCTGAAAGTATAAT+CGG | 0.424667 | 6_1:+28052705 | None:intergenic |
| GATGTTCCCTCTCAGGCTGC+TGG | 0.425293 | 6_1:-28052774 | Msa0881070:intron |
| CAATATCTGAAAGTGAGGTT+TGG | 0.428174 | 6_1:-28052647 | Msa0881070:CDS |
| CCGATTATACTTTCAGGAAC+AGG | 0.429224 | 6_1:-28052705 | Msa0881070:CDS |
| TCTCCTGTGGAGTTTGCTAC+TGG | 0.430125 | 6_1:-28054257 | Msa0881070:CDS |
| CGTAAATTGTTTGATAGTGG+TGG | 0.430467 | 6_1:-28054311 | Msa0881070:CDS |
| ATATCATGGCAGGTAAAATC+CGG | 0.434710 | 6_1:+28052580 | None:intergenic |
| AAGGAGAAGTCCATGAAGAT+TGG | 0.440850 | 6_1:+28054594 | None:intergenic |
| TGGATTTGGTCTTCATTGGT+GGG | 0.443183 | 6_1:-28054228 | Msa0881070:CDS |
| ATGAAGATACAATGACAATC+AGG | 0.445627 | 6_1:+28051788 | None:intergenic |
| CGTCGATGTATTTGTATTGT+GGG | 0.450312 | 6_1:+28054744 | None:intergenic |
| TTTACCTGCCATGATATGTT+CGG | 0.454935 | 6_1:-28052574 | Msa0881070:CDS |
| GAGTTTGCTACTGGTGGGTA+TGG | 0.455560 | 6_1:-28054248 | Msa0881070:CDS |
| TGCATTGATTTGATGGATGG+TGG | 0.458625 | 6_1:-28054407 | Msa0881070:CDS |
| AGATACTCTATGAGACTTAA+GGG | 0.469455 | 6_1:+28051702 | None:intergenic |
| ACAGGAGCAGGTGATGGGGC+TGG | 0.475195 | 6_1:-28052687 | Msa0881070:CDS |
| GCATTGATTTGATGGATGGT+GGG | 0.475819 | 6_1:-28054406 | Msa0881070:CDS |
| ACTTTCAGATATTGACTGAA+TGG | 0.476450 | 6_1:+28052656 | None:intergenic |
| ATCAAGAAAGCATACTTGTC+TGG | 0.477902 | 6_1:-28053736 | Msa0881070:intron |
| TTCGGAGAATGAGCTTCACT+TGG | 0.482774 | 6_1:-28054441 | Msa0881070:CDS |
| CATAGTCTAGTGAGGAAAAT+GGG | 0.483109 | 6_1:+28054846 | None:intergenic |
| CATTTATTTGCAAATTTGGG+TGG | 0.484430 | 6_1:-28051820 | Msa0881070:three_prime_UTR |
| AGAGAGATTGGAATCGAAAT+CGG | 0.485461 | 6_1:+28054664 | None:intergenic |
| TCCATCCTCCGAACATATCA+TGG | 0.485871 | 6_1:+28052566 | None:intergenic |
| TTGAGAGATGAGATTGGTGA+AGG | 0.487769 | 6_1:+28054575 | None:intergenic |
| CCTGTGGAGTTTGCTACTGG+TGG | 0.490836 | 6_1:-28054254 | Msa0881070:CDS |
| CATTAGCAGCATGTATGAAA+GGG | 0.491391 | 6_1:-28051861 | Msa0881070:three_prime_UTR |
| CGGTTGAATGCGGATAGAAC+TGG | 0.492534 | 6_1:+28054707 | None:intergenic |
| GGAGAATGAGCTTCACTTGG+AGG | 0.495077 | 6_1:-28054438 | Msa0881070:CDS |
| ATTGTTTGATAGTGGTGGGT+TGG | 0.495671 | 6_1:-28054306 | Msa0881070:CDS |
| GCATTAGCAGCATGTATGAA+AGG | 0.496238 | 6_1:-28051862 | Msa0881070:three_prime_UTR |
| CAGGAACAGGAGCAGGTGAT+GGG | 0.496867 | 6_1:-28052692 | Msa0881070:CDS |
| AATACATCGACGCCGTTCGT+TGG | 0.497405 | 6_1:-28054733 | Msa0881070:CDS |
| GCGTCGATGTATTTGTATTG+TGG | 0.497450 | 6_1:+28054743 | None:intergenic |
| ATCGCCGCTTCAACTTCCTC+CGG | 0.500028 | 6_1:-28054524 | Msa0881070:CDS |
| TGAGGAACCTATTGAGCTGC+TGG | 0.501027 | 6_1:-28052425 | Msa0881070:CDS |
| CATTGATTTGATGGATGGTG+GGG | 0.506353 | 6_1:-28054405 | Msa0881070:CDS |
| TCAGGAACAGGAGCAGGTGA+TGG | 0.509341 | 6_1:-28052693 | Msa0881070:CDS |
| CCGTCACTGCCATTGCAAAA+GGG | 0.511367 | 6_1:+28054789 | None:intergenic |
| GTGTTACTGTTGGGGATGAT+GGG | 0.513691 | 6_1:-28054376 | Msa0881070:CDS |
| AAGGTGAATTTGGTTACTGT+TGG | 0.514962 | 6_1:-28054353 | Msa0881070:CDS |
| GATTGGAATTCGAAAGAGAG+TGG | 0.515493 | 6_1:+28054611 | None:intergenic |
| TACTGTTGGGGATGATGGGA+AGG | 0.517431 | 6_1:-28054372 | Msa0881070:CDS |
| ATACTTTCAGGAACAGGAGC+AGG | 0.522485 | 6_1:-28052699 | Msa0881070:CDS |
| GAACAAGAAGTGAAGTGAAC+CGG | 0.527173 | 6_1:+28054505 | None:intergenic |
| CGGCGATGATTGATTTCTGA+AGG | 0.529444 | 6_1:+28054540 | None:intergenic |
| CGATGCGAGGCTTGTATCTG+AGG | 0.530352 | 6_1:-28054471 | Msa0881070:CDS |
| GAGGATTTGAGAGATGAGAT+TGG | 0.539351 | 6_1:+28054569 | None:intergenic |
| AACTGAGAAACAGGTCCACC+GGG | 0.540426 | 6_1:+28054194 | None:intergenic |
| TCCTCCGAACATATCATGGC+AGG | 0.540812 | 6_1:+28052570 | None:intergenic |
| ATTTATTTGCAAATTTGGGT+GGG | 0.541888 | 6_1:-28051819 | Msa0881070:three_prime_UTR |
| TGTTGCATTGATTTGATGGA+TGG | 0.542643 | 6_1:-28054410 | Msa0881070:CDS |
| GCCATGATATGTTCGGAGGA+TGG | 0.543883 | 6_1:-28052567 | Msa0881070:CDS |
| GGTTGAGTGTGTTACTGTTG+GGG | 0.546749 | 6_1:-28054384 | Msa0881070:CDS |
| GAGAATGAGCTTCACTTGGA+GGG | 0.549667 | 6_1:-28054437 | Msa0881070:CDS |
| ATGTGATATGTAGTTTAGAG+TGG | 0.549807 | 6_1:-28052106 | Msa0881070:CDS |
| GAAATCGGAAGTAGCGAGAA+CGG | 0.550581 | 6_1:+28054679 | None:intergenic |
| CCAAGCCAAAACAGTACCTA+AGG | 0.551483 | 6_1:+28052749 | None:intergenic |
| ATCTGAAAGTGAGGTTTGGG+AGG | 0.562054 | 6_1:-28052643 | Msa0881070:CDS |
| ATTTGTATTGTGGGAATCTG+TGG | 0.564070 | 6_1:+28054753 | None:intergenic |
| CTCAGATACAAGCCTCGCAT+CGG | 0.564804 | 6_1:+28054472 | None:intergenic |
| AGTGAAATGGGCTTCTCCTG+TGG | 0.565210 | 6_1:-28054270 | Msa0881070:CDS |
| TTTGAAAGAGTGGATTTCGA+TGG | 0.570567 | 6_1:+28054640 | None:intergenic |
| GATTGATTTCTGAAGGAACT+GGG | 0.570627 | 6_1:+28054547 | None:intergenic |
| CTGTGGAGTTTGCTACTGGT+GGG | 0.571129 | 6_1:-28054253 | Msa0881070:CDS |
| AGATACAAGCCTCGCATCGG+TGG | 0.575163 | 6_1:+28054475 | None:intergenic |
| AAACTGAGAAACAGGTCCAC+CGG | 0.575931 | 6_1:+28054193 | None:intergenic |
| TATTGATCGACATAATCCAT+TGG | 0.579252 | 6_1:-28052374 | Msa0881070:intron |
| ATTCTTGGCGTGATTGAGCA+AGG | 0.582274 | 6_1:-28052543 | Msa0881070:intron |
| ACCTGCCATGATATGTTCGG+AGG | 0.585049 | 6_1:-28052571 | Msa0881070:CDS |
| AGAATGAGCTTCACTTGGAG+GGG | 0.586057 | 6_1:-28054436 | Msa0881070:CDS |
| GTAAATTGTTTGATAGTGGT+GGG | 0.592376 | 6_1:-28054310 | Msa0881070:CDS |
| TGTGATATGTAGTTTAGAGT+GGG | 0.593378 | 6_1:-28052105 | Msa0881070:CDS |
| TCAGTCAATATCTGAAAGTG+AGG | 0.610452 | 6_1:-28052652 | Msa0881070:CDS |
| TGGTGGGATCAGAGAAAACC+CGG | 0.615892 | 6_1:-28054212 | Msa0881070:CDS |
| TATCATGGCAGGTAAAATCC+GGG | 0.619066 | 6_1:+28052581 | None:intergenic |
| AACGGCGAAGCGGTTGAATG+CGG | 0.627680 | 6_1:+28054697 | None:intergenic |
| TCGCTGATTCCACCGATGCG+AGG | 0.633426 | 6_1:-28054484 | Msa0881070:CDS |
| TGAACCGGAGGAAGTTGAAG+CGG | 0.635756 | 6_1:+28054520 | None:intergenic |
| AGGAACAGGAGCAGGTGATG+GGG | 0.636331 | 6_1:-28052691 | Msa0881070:CDS |
| CCACCAGTAGCAAACTCCAC+AGG | 0.639801 | 6_1:+28054254 | None:intergenic |
| TAGAACTGGAAGCCAACGAA+CGG | 0.640983 | 6_1:+28054721 | None:intergenic |
| GTGATCACGTTAAATCAACA+TGG | 0.649909 | 6_1:+28051749 | None:intergenic |
| ATTAGCAGCATGTATGAAAG+GGG | 0.651182 | 6_1:-28051860 | Msa0881070:three_prime_UTR |
| AATCAAACACTTCATCTACC+CGG | 0.653812 | 6_1:-28052599 | Msa0881070:CDS |
| TCAAAGCTATTGATGGCACA+AGG | 0.659949 | 6_1:+28052397 | None:intergenic |
| CAAGAAGTGAAGTGAACCGG+AGG | 0.667621 | 6_1:+28054508 | None:intergenic |
| TGATTTCTGAAGGAACTGGG+AGG | 0.689311 | 6_1:+28054550 | None:intergenic |
| AATTCGCGCATAGTCTAGTG+AGG | 0.690151 | 6_1:+28054838 | None:intergenic |
| AAGTAGCGAGAACGGCGAAG+CGG | 0.696247 | 6_1:+28054687 | None:intergenic |
| TGGGATCAGAGAAAACCCGG+TGG | 0.782591 | 6_1:-28054209 | Msa0881070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATTAAAACCAATTT+TGG | + | chr6_1:28053254-28053273 | None:intergenic | 10.0% |
| !! | GTATAAGTAAATCATATAAA+AGG | + | chr6_1:28052884-28052903 | None:intergenic | 15.0% |
| !!! | TTTTTTAAGCTTAAAAATGT+TGG | - | chr6_1:28052981-28053000 | Msa0881070:intron | 15.0% |
| !!! | TGGTTTTAATATTATTTTGA+TGG | - | chr6_1:28053258-28053277 | Msa0881070:intron | 15.0% |
| !!! | AAAAATAACTGTTTTATCAT+AGG | - | chr6_1:28053634-28053653 | Msa0881070:intron | 15.0% |
| !! | ATAAGAATTTATCAGATTAA+TGG | - | chr6_1:28053692-28053711 | Msa0881070:intron | 15.0% |
| !!! | TATATTTTAAAAGCTATTGA+TGG | + | chr6_1:28054226-28054245 | None:intergenic | 15.0% |
| !! | TATTTAATAGATAAACCATT+TGG | + | chr6_1:28054260-28054279 | None:intergenic | 15.0% |
| !!! | ACATTTATTTTATCTTGTCT+TGG | - | chr6_1:28052588-28052607 | Msa0881070:CDS | 20.0% |
| !!! | CATTTATTTTATCTTGTCTT+GGG | - | chr6_1:28052589-28052608 | Msa0881070:CDS | 20.0% |
| !! | AAATCATATAAAAGGAATTG+AGG | + | chr6_1:28052876-28052895 | None:intergenic | 20.0% |
| !! | AAGTAAACATAAACTGTAAA+AGG | + | chr6_1:28053744-28053763 | None:intergenic | 20.0% |
| !! | TATACATTATAATCACCAAA+TGG | - | chr6_1:28054242-28054261 | Msa0881070:CDS | 20.0% |
| !!! | CTAGTAAAAGAATGATTTTA+TGG | - | chr6_1:28054280-28054299 | Msa0881070:CDS | 20.0% |
| !!! | TTGAAATTGAGAATTTTGAA+AGG | - | chr6_1:28054542-28054561 | Msa0881070:CDS | 20.0% |
| !!! | TGAAATTGAGAATTTTGAAA+GGG | - | chr6_1:28054543-28054562 | Msa0881070:CDS | 20.0% |
| !! | TTACAAAAGAACAATACATT+TGG | + | chr6_1:28054632-28054651 | None:intergenic | 20.0% |
| !!! | AAAATCCATTTTCATACTAA+TGG | + | chr6_1:28054657-28054676 | None:intergenic | 20.0% |
| !!! | ATTAGTATGAAAATGGATTT+TGG | - | chr6_1:28054656-28054675 | Msa0881070:CDS | 20.0% |
| !! | ATTGCATTTATTTGCAAATT+TGG | - | chr6_1:28054741-28054760 | Msa0881070:CDS | 20.0% |
| !! | TTGCATTTATTTGCAAATTT+GGG | - | chr6_1:28054742-28054761 | Msa0881070:CDS | 20.0% |
| ! | TATCGTAAATTGTTTGATAG+TGG | - | chr6_1:28052251-28052270 | Msa0881070:intron | 25.0% |
| ! | TAGCTTATGAAAATAACTTC+TGG | - | chr6_1:28052547-28052566 | Msa0881070:CDS | 25.0% |
| !! | ATTAAGTTGTTTAACCGAAT+AGG | - | chr6_1:28052700-28052719 | Msa0881070:CDS | 25.0% |
| ! | TCTAATATTTGAACAATCCT+AGG | + | chr6_1:28052728-28052747 | None:intergenic | 25.0% |
| ! | AGGGATAAAAATTTGAATTC+TGG | - | chr6_1:28052779-28052798 | Msa0881070:intron | 25.0% |
| ! | GGGATAAAAATTTGAATTCT+GGG | - | chr6_1:28052780-28052799 | Msa0881070:intron | 25.0% |
| !!! | TATACTTTTTTCAGTGATTG+TGG | - | chr6_1:28052899-28052918 | Msa0881070:intron | 25.0% |
| ! | TGTGTTCTTAGTATCTTATA+TGG | + | chr6_1:28053295-28053314 | None:intergenic | 25.0% |
| ! | GAGAACAAAAATATGATTCT+GGG | + | chr6_1:28053337-28053356 | None:intergenic | 25.0% |
| ! | TGAGAACAAAAATATGATTC+TGG | + | chr6_1:28053338-28053357 | None:intergenic | 25.0% |
| ! | TTGTTCTCAACTTACATTAT+TGG | - | chr6_1:28053349-28053368 | Msa0881070:intron | 25.0% |
| ! | TGTTCTCAACTTACATTATT+GGG | - | chr6_1:28053350-28053369 | Msa0881070:intron | 25.0% |
| ! | TCTTTAAATACACATGGAAT+CGG | - | chr6_1:28053422-28053441 | Msa0881070:intron | 25.0% |
| ! | GTAGGATAAATAAAGAACAT+TGG | + | chr6_1:28053547-28053566 | None:intergenic | 25.0% |
| ! | AACAAAAATTAAGACCAGAA+GGG | - | chr6_1:28053567-28053586 | Msa0881070:intron | 25.0% |
| ! | GAACATCAATAACTAAGAAA+CGG | + | chr6_1:28053778-28053797 | None:intergenic | 25.0% |
| ! | CAAATATATTCCTGATGAAT+TGG | + | chr6_1:28054086-28054105 | None:intergenic | 25.0% |
| ! | CAATTCATCAGGAATATATT+TGG | - | chr6_1:28054084-28054103 | Msa0881070:intron | 25.0% |
| ! | ATCAATATCAAAGCTATTGA+TGG | + | chr6_1:28054178-28054197 | None:intergenic | 25.0% |
| ! | TATGGAAAACATGTTATCTT+AGG | - | chr6_1:28054298-28054317 | Msa0881070:CDS | 25.0% |
| ! | AAATGATAGAGAGAAAAAAG+TGG | - | chr6_1:28054382-28054401 | Msa0881070:CDS | 25.0% |
| ! | ATGTTATTGTCTTGTCAATA+TGG | + | chr6_1:28054495-28054514 | None:intergenic | 25.0% |
| !!! | GAAATTGAGAATTTTGAAAG+GGG | - | chr6_1:28054544-28054563 | Msa0881070:CDS | 25.0% |
| ! | TAAAGCCATTAGTATGAAAA+TGG | - | chr6_1:28054649-28054668 | Msa0881070:CDS | 25.0% |
| ! | ATTTATTTGCAAATTTGGGT+GGG | - | chr6_1:28054746-28054765 | Msa0881070:CDS | 25.0% |
| !! | GTAAATTGTTTGATAGTGGT+GGG | - | chr6_1:28052255-28052274 | Msa0881070:intron | 30.0% |
| TTTCTTATACGTCAGTGAAA+TGG | - | chr6_1:28052282-28052301 | Msa0881070:intron | 30.0% | |
| TTCTTATACGTCAGTGAAAT+GGG | - | chr6_1:28052283-28052302 | Msa0881070:intron | 30.0% | |
| TTTCTCAGTTTAAGGGTAAT+TGG | - | chr6_1:28052384-28052403 | Msa0881070:CDS | 30.0% | |
| AGTAAGCTAAAAACAGCTTA+TGG | + | chr6_1:28052509-28052528 | None:intergenic | 30.0% | |
| ACAACCATTTATGCTATACA+CGG | - | chr6_1:28052674-28052693 | Msa0881070:CDS | 30.0% | |
| TTAACCGTGTATAGCATAAA+TGG | + | chr6_1:28052681-28052700 | None:intergenic | 30.0% | |
| TTAGAGTTATACTTAGTGTG+TGG | - | chr6_1:28052743-28052762 | Msa0881070:CDS | 30.0% | |
| TATAAAAGGAATTGAGGAGT+GGG | + | chr6_1:28052870-28052889 | None:intergenic | 30.0% | |
| ATATAAAAGGAATTGAGGAG+TGG | + | chr6_1:28052871-28052890 | None:intergenic | 30.0% | |
| ! | TTTTCAGTGATTGTGGATTT+TGG | - | chr6_1:28052906-28052925 | Msa0881070:intron | 30.0% |
| TCTGAACTAAAATAAGTCTG+TGG | - | chr6_1:28052946-28052965 | Msa0881070:intron | 30.0% | |
| ! | ATCTATCCAACTAGTTGTTT+TGG | - | chr6_1:28053089-28053108 | Msa0881070:intron | 30.0% |
| AACTATCCAAAACAACTAGT+TGG | + | chr6_1:28053098-28053117 | None:intergenic | 30.0% | |
| TTTCAGTATAGACCAATAAG+GGG | + | chr6_1:28053132-28053151 | None:intergenic | 30.0% | |
| GTTTCAGTATAGACCAATAA+GGG | + | chr6_1:28053133-28053152 | None:intergenic | 30.0% | |
| AGTTTCAGTATAGACCAATA+AGG | + | chr6_1:28053134-28053153 | None:intergenic | 30.0% | |
| GTATCTTATATGGCATCTTT+AGG | + | chr6_1:28053285-28053304 | None:intergenic | 30.0% | |
| ! | TCTGGGATTACAGTAAAAAT+GGG | + | chr6_1:28053320-28053339 | None:intergenic | 30.0% |
| !! | TTCTGGGATTACAGTAAAAA+TGG | + | chr6_1:28053321-28053340 | None:intergenic | 30.0% |
| ATTTAAAGAGTTCCCATAGT+GGG | + | chr6_1:28053411-28053430 | None:intergenic | 30.0% | |
| TATTTAAAGAGTTCCCATAG+TGG | + | chr6_1:28053412-28053431 | None:intergenic | 30.0% | |
| !!! | CTGGTCTTAATTTTTGTTGT+AGG | + | chr6_1:28053565-28053584 | None:intergenic | 30.0% |
| CAACAAAAATTAAGACCAGA+AGG | - | chr6_1:28053566-28053585 | Msa0881070:intron | 30.0% | |
| ! | ACTTTCAGATATTGACTGAA+TGG | + | chr6_1:28053912-28053931 | None:intergenic | 30.0% |
| AATATCTGAAAGTGAGGTTT+GGG | - | chr6_1:28053919-28053938 | Msa0881070:intron | 30.0% | |
| GTTAAAAATGCCAATTCATC+AGG | - | chr6_1:28054073-28054092 | Msa0881070:intron | 30.0% | |
| TATTGATCGACATAATCCAT+TGG | - | chr6_1:28054191-28054210 | Msa0881070:CDS | 30.0% | |
| GAACAATAACATCATCAGAA+AGG | + | chr6_1:28054431-28054450 | None:intergenic | 30.0% | |
| ATGTGATATGTAGTTTAGAG+TGG | - | chr6_1:28054459-28054478 | Msa0881070:CDS | 30.0% | |
| ! | TGTGATATGTAGTTTAGAGT+GGG | - | chr6_1:28054460-28054479 | Msa0881070:CDS | 30.0% |
| !! | ATGAAAATGGATTTTGGCAT+TGG | - | chr6_1:28054662-28054681 | Msa0881070:CDS | 30.0% |
| CATTTATTTGCAAATTTGGG+TGG | - | chr6_1:28054745-28054764 | Msa0881070:CDS | 30.0% | |
| ATGAAGATACAATGACAATC+AGG | + | chr6_1:28054780-28054799 | None:intergenic | 30.0% | |
| CATAGTCTAGTGAGGAAAAT+GGG | + | chr6_1:28051722-28051741 | None:intergenic | 35.0% | |
| ! | AAGCATAAACCCTTTTGCAA+TGG | - | chr6_1:28051767-28051786 | Msa0881070:three_prime_UTR | 35.0% |
| ATTTGTATTGTGGGAATCTG+TGG | + | chr6_1:28051815-28051834 | None:intergenic | 35.0% | |
| CGTCGATGTATTTGTATTGT+GGG | + | chr6_1:28051824-28051843 | None:intergenic | 35.0% | |
| AGAGAGATTGGAATCGAAAT+CGG | + | chr6_1:28051904-28051923 | None:intergenic | 35.0% | |
| ! | TTTGAAAGAGTGGATTTCGA+TGG | + | chr6_1:28051928-28051947 | None:intergenic | 35.0% |
| ! | AATTCGAAAGAGAGTGGATT+TGG | + | chr6_1:28051951-28051970 | None:intergenic | 35.0% |
| CTTTCGAATTCCAATCTTCA+TGG | - | chr6_1:28051961-28051980 | Msa0881070:three_prime_UTR | 35.0% | |
| ! | GATTGATTTCTGAAGGAACT+GGG | + | chr6_1:28052021-28052040 | None:intergenic | 35.0% |
| ! | TGATTGATTTCTGAAGGAAC+TGG | + | chr6_1:28052022-28052041 | None:intergenic | 35.0% |
| ! | TGTATCTGAGGTATCTGTTT+CGG | - | chr6_1:28052106-28052125 | Msa0881070:CDS | 35.0% |
| !! | GAAGTGTTGCATTGATTTGA+TGG | - | chr6_1:28052151-28052170 | Msa0881070:intron | 35.0% |
| !! | TGTTGCATTGATTTGATGGA+TGG | - | chr6_1:28052155-28052174 | Msa0881070:intron | 35.0% |
| AAGGTGAATTTGGTTACTGT+TGG | - | chr6_1:28052212-28052231 | Msa0881070:intron | 35.0% | |
| !! | CGTAAATTGTTTGATAGTGG+TGG | - | chr6_1:28052254-28052273 | Msa0881070:intron | 35.0% |
| TTACCCTTAAACTGAGAAAC+AGG | + | chr6_1:28052383-28052402 | None:intergenic | 35.0% | |
| TACTCTCAAGTCTCAACTAA+AGG | + | chr6_1:28052425-28052444 | None:intergenic | 35.0% | |
| AAACACTCGTGATATCATGT+AGG | - | chr6_1:28052455-28052474 | Msa0881070:intron | 35.0% | |
| AGTTATACTTAGTGTGTGGT+TGG | - | chr6_1:28052747-28052766 | Msa0881070:CDS | 35.0% | |
| AGACAAGTATGCTTTCTTGA+TGG | + | chr6_1:28052830-28052849 | None:intergenic | 35.0% | |
| ! | ATCAAGAAAGCATACTTGTC+TGG | - | chr6_1:28052829-28052848 | Msa0881070:intron | 35.0% |
| ATAAAAGGAATTGAGGAGTG+GGG | + | chr6_1:28052869-28052888 | None:intergenic | 35.0% | |
| TTCAGAAATTCAGACCACAA+TGG | + | chr6_1:28052932-28052951 | None:intergenic | 35.0% | |
| TTCAACTTTCAACCCCTTAT+TGG | - | chr6_1:28053117-28053136 | Msa0881070:intron | 35.0% | |
| TGCAATGCTAGAACCAAAAT+TGG | - | chr6_1:28053238-28053257 | Msa0881070:intron | 35.0% | |
| GGGAACTCTTTAAATACACA+TGG | - | chr6_1:28053416-28053435 | Msa0881070:intron | 35.0% | |
| TCGCTAGAATTAAGAATACG+AGG | - | chr6_1:28053469-28053488 | Msa0881070:intron | 35.0% | |
| CGCTAGAATTAAGAATACGA+GGG | - | chr6_1:28053470-28053489 | Msa0881070:intron | 35.0% | |
| CAACAACCGATTATACTTTC+AGG | - | chr6_1:28053854-28053873 | Msa0881070:intron | 35.0% | |
| ! | CCTGTTCCTGAAAGTATAAT+CGG | + | chr6_1:28053863-28053882 | None:intergenic | 35.0% |
| TCAGTCAATATCTGAAAGTG+AGG | - | chr6_1:28053913-28053932 | Msa0881070:intron | 35.0% | |
| CAATATCTGAAAGTGAGGTT+TGG | - | chr6_1:28053918-28053937 | Msa0881070:intron | 35.0% | |
| AATCAAACACTTCATCTACC+CGG | - | chr6_1:28053966-28053985 | Msa0881070:intron | 35.0% | |
| ATATCATGGCAGGTAAAATC+CGG | + | chr6_1:28053988-28054007 | None:intergenic | 35.0% | |
| TTTACCTGCCATGATATGTT+CGG | - | chr6_1:28053991-28054010 | Msa0881070:intron | 35.0% | |
| GACATAATCCATTGGTAAGT+GGG | - | chr6_1:28054199-28054218 | Msa0881070:CDS | 35.0% | |
| ACATAATCCATTGGTAAGTG+GGG | - | chr6_1:28054200-28054219 | Msa0881070:CDS | 35.0% | |
| TAGCAACGATGTAAAAACAC+CGG | + | chr6_1:28054338-28054357 | None:intergenic | 35.0% | |
| AAGTGGTAACTAGATGAATG+TGG | - | chr6_1:28054399-28054418 | Msa0881070:CDS | 35.0% | |
| ATGATGTTATTGTTCCATGC+AGG | - | chr6_1:28054436-28054455 | Msa0881070:CDS | 35.0% | |
| !! | AAAATGGATTTTGGCATTGG+CGG | - | chr6_1:28054665-28054684 | Msa0881070:CDS | 35.0% |
| CATTAGCAGCATGTATGAAA+GGG | - | chr6_1:28054704-28054723 | Msa0881070:CDS | 35.0% | |
| ATTAGCAGCATGTATGAAAG+GGG | - | chr6_1:28054705-28054724 | Msa0881070:CDS | 35.0% | |
| GTGATCACGTTAAATCAACA+TGG | + | chr6_1:28054819-28054838 | None:intergenic | 35.0% | |
| GCATAGTCTAGTGAGGAAAA+TGG | + | chr6_1:28051723-28051742 | None:intergenic | 40.0% | |
| ! | GCGTCGATGTATTTGTATTG+TGG | + | chr6_1:28051825-28051844 | None:intergenic | 40.0% |
| GATTTCGATGGAAGAGAGAT+TGG | + | chr6_1:28051916-28051935 | None:intergenic | 40.0% | |
| !! | GTGGATTTGGTTTGAAAGAG+TGG | + | chr6_1:28051938-28051957 | None:intergenic | 40.0% |
| GATTGGAATTCGAAAGAGAG+TGG | + | chr6_1:28051957-28051976 | None:intergenic | 40.0% | |
| AAGGAGAAGTCCATGAAGAT+TGG | + | chr6_1:28051974-28051993 | None:intergenic | 40.0% | |
| TTGAGAGATGAGATTGGTGA+AGG | + | chr6_1:28051993-28052012 | None:intergenic | 40.0% | |
| GAGGATTTGAGAGATGAGAT+TGG | + | chr6_1:28051999-28052018 | None:intergenic | 40.0% | |
| GAACAAGAAGTGAAGTGAAC+CGG | + | chr6_1:28052063-28052082 | None:intergenic | 40.0% | |
| !! | TGCATTGATTTGATGGATGG+TGG | - | chr6_1:28052158-28052177 | Msa0881070:intron | 40.0% |
| !! | GCATTGATTTGATGGATGGT+GGG | - | chr6_1:28052159-28052178 | Msa0881070:intron | 40.0% |
| !! | CATTGATTTGATGGATGGTG+GGG | - | chr6_1:28052160-28052179 | Msa0881070:intron | 40.0% |
| !! | ATTGTTTGATAGTGGTGGGT+TGG | - | chr6_1:28052259-28052278 | Msa0881070:intron | 40.0% |
| ! | GGTATGGATTTGGTCTTCAT+TGG | - | chr6_1:28052333-28052352 | Msa0881070:intron | 40.0% |
| ! | ATGGATTTGGTCTTCATTGG+TGG | - | chr6_1:28052336-28052355 | Msa0881070:intron | 40.0% |
| ! | TGGATTTGGTCTTCATTGGT+GGG | - | chr6_1:28052337-28052356 | Msa0881070:intron | 40.0% |
| ! | TGGACCTGTTTCTCAGTTTA+AGG | - | chr6_1:28052376-28052395 | Msa0881070:CDS | 40.0% |
| ! | GGACCTGTTTCTCAGTTTAA+GGG | - | chr6_1:28052377-28052396 | Msa0881070:CDS | 40.0% |
| CTTACTTCTGTACACTCTCT+AGG | - | chr6_1:28052523-28052542 | Msa0881070:intron | 40.0% | |
| AACAATCCTAGGCTCCTATT+CGG | + | chr6_1:28052717-28052736 | None:intergenic | 40.0% | |
| !!! | TGTGTGGTTGGTTTTTTTGC+AGG | - | chr6_1:28052759-28052778 | Msa0881070:CDS | 40.0% |
| !!! | GTGTGGTTGGTTTTTTTGCA+GGG | - | chr6_1:28052760-28052779 | Msa0881070:CDS | 40.0% |
| TAAAAGGAATTGAGGAGTGG+GGG | + | chr6_1:28052868-28052887 | None:intergenic | 40.0% | |
| !! | ATTGTGGATTTTGGCCATTG+TGG | - | chr6_1:28052915-28052934 | Msa0881070:intron | 40.0% |
| ACAGTTCTTATGCCAAAAGG+TGG | + | chr6_1:28053388-28053407 | None:intergenic | 40.0% | |
| CATAAGAACTGTCCCACTAT+GGG | - | chr6_1:28053396-28053415 | Msa0881070:intron | 40.0% | |
| ACGAGCTTCTTTACTTGTCT+TGG | + | chr6_1:28053503-28053522 | None:intergenic | 40.0% | |
| GATGAAAAACAGTTCCCTTC+TGG | + | chr6_1:28053584-28053603 | None:intergenic | 40.0% | |
| TAATGGTTTAGAGAGCTGAG+TGG | - | chr6_1:28053709-28053728 | Msa0881070:intron | 40.0% | |
| AGTTATTGATGTTCCCTCTC+AGG | - | chr6_1:28053784-28053803 | Msa0881070:CDS | 40.0% | |
| !!! | CTTAGGTACTGTTTTGGCTT+GGG | - | chr6_1:28053817-28053836 | Msa0881070:intron | 40.0% |
| CCGATTATACTTTCAGGAAC+AGG | - | chr6_1:28053860-28053879 | Msa0881070:intron | 40.0% | |
| TATCATGGCAGGTAAAATCC+GGG | + | chr6_1:28053987-28054006 | None:intergenic | 40.0% | |
| ! | TCAAAGCTATTGATGGCACA+AGG | + | chr6_1:28054171-28054190 | None:intergenic | 40.0% |
| CGACATAATCCATTGGTAAG+TGG | - | chr6_1:28054198-28054217 | Msa0881070:CDS | 40.0% | |
| TTAGGACGATTCTTCTGTTC+CGG | - | chr6_1:28054316-28054335 | Msa0881070:CDS | 40.0% | |
| ACTACATATCACATCCTGCA+TGG | + | chr6_1:28054453-28054472 | None:intergenic | 40.0% | |
| TTTGTAGCTGATGGAAGAAC+TGG | - | chr6_1:28054573-28054592 | Msa0881070:CDS | 40.0% | |
| GCATTAGCAGCATGTATGAA+AGG | - | chr6_1:28054703-28054722 | Msa0881070:CDS | 40.0% | |
| AATTCGCGCATAGTCTAGTG+AGG | + | chr6_1:28051730-28051749 | None:intergenic | 45.0% | |
| TAGAACTGGAAGCCAACGAA+CGG | + | chr6_1:28051847-28051866 | None:intergenic | 45.0% | |
| GAAATCGGAAGTAGCGAGAA+CGG | + | chr6_1:28051889-28051908 | None:intergenic | 45.0% | |
| ! | TGATTTCTGAAGGAACTGGG+AGG | + | chr6_1:28052018-28052037 | None:intergenic | 45.0% |
| ! | CGGCGATGATTGATTTCTGA+AGG | + | chr6_1:28052028-28052047 | None:intergenic | 45.0% |
| TTCGGAGAATGAGCTTCACT+TGG | - | chr6_1:28052124-28052143 | Msa0881070:intron | 45.0% | |
| GAGAATGAGCTTCACTTGGA+GGG | - | chr6_1:28052128-28052147 | Msa0881070:intron | 45.0% | |
| AGAATGAGCTTCACTTGGAG+GGG | - | chr6_1:28052129-28052148 | Msa0881070:intron | 45.0% | |
| ! | GGGTTGAGTGTGTTACTGTT+GGG | - | chr6_1:28052180-28052199 | Msa0881070:intron | 45.0% |
| ! | GGTTGAGTGTGTTACTGTTG+GGG | - | chr6_1:28052181-28052200 | Msa0881070:intron | 45.0% |
| ! | TGTGTTACTGTTGGGGATGA+TGG | - | chr6_1:28052188-28052207 | Msa0881070:intron | 45.0% |
| ! | GTGTTACTGTTGGGGATGAT+GGG | - | chr6_1:28052189-28052208 | Msa0881070:intron | 45.0% |
| !! | GGATGATGGGAAGGTGAATT+TGG | - | chr6_1:28052202-28052221 | Msa0881070:intron | 45.0% |
| AAACTGAGAAACAGGTCCAC+CGG | + | chr6_1:28052375-28052394 | None:intergenic | 45.0% | |
| GTTTAACCGAATAGGAGCCT+AGG | - | chr6_1:28052708-28052727 | Msa0881070:CDS | 45.0% | |
| AATCACACATGCAGACACAG+TGG | + | chr6_1:28053160-28053179 | None:intergenic | 45.0% | |
| ACTGTGTCTGCATGTGTGAT+TGG | - | chr6_1:28053159-28053178 | Msa0881070:intron | 45.0% | |
| ! | TCCCACAATTCACCACCTTT+TGG | - | chr6_1:28053373-28053392 | Msa0881070:intron | 45.0% |
| GCCAAAAGGTGGTGAATTGT+GGG | + | chr6_1:28053377-28053396 | None:intergenic | 45.0% | |
| TGCCAAAAGGTGGTGAATTG+TGG | + | chr6_1:28053378-28053397 | None:intergenic | 45.0% | |
| GGGACAGTTCTTATGCCAAA+AGG | + | chr6_1:28053391-28053410 | None:intergenic | 45.0% | |
| GCATAAGAACTGTCCCACTA+TGG | - | chr6_1:28053395-28053414 | Msa0881070:intron | 45.0% | |
| TGGAATCGGCAAATCCCTTA+AGG | - | chr6_1:28053436-28053455 | Msa0881070:intron | 45.0% | |
| GGAATCGGCAAATCCCTTAA+GGG | - | chr6_1:28053437-28053456 | Msa0881070:intron | 45.0% | |
| !! | TGGCTCCTTAGGTACTGTTT+TGG | - | chr6_1:28053811-28053830 | Msa0881070:intron | 45.0% |
| CCAAGCCAAAACAGTACCTA+AGG | + | chr6_1:28053819-28053838 | None:intergenic | 45.0% | |
| !!! | CCTTAGGTACTGTTTTGGCT+TGG | - | chr6_1:28053816-28053835 | Msa0881070:intron | 45.0% |
| !!! | CTGTTTTGGCTTGGGATCTT+AGG | - | chr6_1:28053825-28053844 | Msa0881070:intron | 45.0% |
| ATACTTTCAGGAACAGGAGC+AGG | - | chr6_1:28053866-28053885 | Msa0881070:intron | 45.0% | |
| ATCTGAAAGTGAGGTTTGGG+AGG | - | chr6_1:28053922-28053941 | Msa0881070:intron | 45.0% | |
| TCCATCCTCCGAACATATCA+TGG | + | chr6_1:28054002-28054021 | None:intergenic | 45.0% | |
| TGTTCGGAGGATGGAATTCT+TGG | - | chr6_1:28054007-28054026 | Msa0881070:intron | 45.0% | |
| ATTCTTGGCGTGATTGAGCA+AGG | - | chr6_1:28054022-28054041 | Msa0881070:intron | 45.0% | |
| GTTGTGTTCTTACATCGCCT+AGG | - | chr6_1:28054117-28054136 | Msa0881070:intron | 45.0% | |
| ! | GGGTAGCATTTTGTAGCTGA+TGG | - | chr6_1:28054564-28054583 | Msa0881070:CDS | 45.0% |
| CTAGACTATGCGCGAATTGC+AGG | - | chr6_1:28051732-28051751 | Msa0881070:three_prime_UTR | 50.0% | |
| CCGTCACTGCCATTGCAAAA+GGG | + | chr6_1:28051779-28051798 | None:intergenic | 50.0% | |
| ! | CCCTTTTGCAATGGCAGTGA+CGG | - | chr6_1:28051776-28051795 | Msa0881070:three_prime_UTR | 50.0% |
| AATACATCGACGCCGTTCGT+TGG | - | chr6_1:28051832-28051851 | Msa0881070:three_prime_UTR | 50.0% | |
| CGGTTGAATGCGGATAGAAC+TGG | + | chr6_1:28051861-28051880 | None:intergenic | 50.0% | |
| TGAACCGGAGGAAGTTGAAG+CGG | + | chr6_1:28052048-28052067 | None:intergenic | 50.0% | |
| CAAGAAGTGAAGTGAACCGG+AGG | + | chr6_1:28052060-28052079 | None:intergenic | 50.0% | |
| CTCAGATACAAGCCTCGCAT+CGG | + | chr6_1:28052096-28052115 | None:intergenic | 50.0% | |
| GGAGAATGAGCTTCACTTGG+AGG | - | chr6_1:28052127-28052146 | Msa0881070:intron | 50.0% | |
| ! | GGGGTTGAGTGTGTTACTGT+TGG | - | chr6_1:28052179-28052198 | Msa0881070:intron | 50.0% |
| !! | TACTGTTGGGGATGATGGGA+AGG | - | chr6_1:28052193-28052212 | Msa0881070:intron | 50.0% |
| ! | AGTGAAATGGGCTTCTCCTG+TGG | - | chr6_1:28052295-28052314 | Msa0881070:intron | 50.0% |
| !! | TCTCCTGTGGAGTTTGCTAC+TGG | - | chr6_1:28052308-28052327 | Msa0881070:intron | 50.0% |
| !! | CTGTGGAGTTTGCTACTGGT+GGG | - | chr6_1:28052312-28052331 | Msa0881070:intron | 50.0% |
| !! | GAGTTTGCTACTGGTGGGTA+TGG | - | chr6_1:28052317-28052336 | Msa0881070:intron | 50.0% |
| ! | GCTACTGGTGGGTATGGATT+TGG | - | chr6_1:28052323-28052342 | Msa0881070:intron | 50.0% |
| TGGTGGGATCAGAGAAAACC+CGG | - | chr6_1:28052353-28052372 | Msa0881070:intron | 50.0% | |
| AACTGAGAAACAGGTCCACC+GGG | + | chr6_1:28052374-28052393 | None:intergenic | 50.0% | |
| ACCTGCCATGATATGTTCGG+AGG | - | chr6_1:28053994-28054013 | Msa0881070:intron | 50.0% | |
| TCCTCCGAACATATCATGGC+AGG | + | chr6_1:28053998-28054017 | None:intergenic | 50.0% | |
| GCCATGATATGTTCGGAGGA+TGG | - | chr6_1:28053998-28054017 | Msa0881070:intron | 50.0% | |
| GTTCTTACATCGCCTAGGTG+AGG | - | chr6_1:28054122-28054141 | Msa0881070:intron | 50.0% | |
| GCTCAATAGGTTCCTCACCT+AGG | + | chr6_1:28054137-28054156 | None:intergenic | 50.0% | |
| TGAGGAACCTATTGAGCTGC+TGG | - | chr6_1:28054140-28054159 | Msa0881070:intron | 50.0% | |
| ! | TTGATGGCCCCACTTACCAA+TGG | + | chr6_1:28054210-28054229 | None:intergenic | 50.0% |
| GCCGTCACTGCCATTGCAAA+AGG | + | chr6_1:28051780-28051799 | None:intergenic | 55.0% | |
| AACGGCGAAGCGGTTGAATG+CGG | + | chr6_1:28051871-28051890 | None:intergenic | 55.0% | |
| AAGTAGCGAGAACGGCGAAG+CGG | + | chr6_1:28051881-28051900 | None:intergenic | 55.0% | |
| ATCGCCGCTTCAACTTCCTC+CGG | - | chr6_1:28052041-28052060 | Msa0881070:three_prime_UTR | 55.0% | |
| AGATACAAGCCTCGCATCGG+TGG | + | chr6_1:28052093-28052112 | None:intergenic | 55.0% | |
| CGATGCGAGGCTTGTATCTG+AGG | - | chr6_1:28052094-28052113 | Msa0881070:CDS | 55.0% | |
| CCACCAGTAGCAAACTCCAC+AGG | + | chr6_1:28052314-28052333 | None:intergenic | 55.0% | |
| !! | CCTGTGGAGTTTGCTACTGG+TGG | - | chr6_1:28052311-28052330 | Msa0881070:intron | 55.0% |
| TGGGATCAGAGAAAACCCGG+TGG | - | chr6_1:28052356-28052375 | Msa0881070:intron | 55.0% | |
| GCGAGCTGTTGCACCCTTAA+GGG | + | chr6_1:28053453-28053472 | None:intergenic | 55.0% | |
| AGCGAGCTGTTGCACCCTTA+AGG | + | chr6_1:28053454-28053473 | None:intergenic | 55.0% | |
| TAGAGAGCTGAGTGGCTGCA+TGG | - | chr6_1:28053717-28053736 | Msa0881070:intron | 55.0% | |
| TCAGGAACAGGAGCAGGTGA+TGG | - | chr6_1:28053872-28053891 | Msa0881070:intron | 55.0% | |
| CAGGAACAGGAGCAGGTGAT+GGG | - | chr6_1:28053873-28053892 | Msa0881070:intron | 55.0% | |
| AGGAACAGGAGCAGGTGATG+GGG | - | chr6_1:28053874-28053893 | Msa0881070:intron | 55.0% | |
| GGTTCTGCCAGCAGCTCAAT+AGG | + | chr6_1:28054150-28054169 | None:intergenic | 55.0% | |
| !! | TCGCTGATTCCACCGATGCG+AGG | - | chr6_1:28052081-28052100 | Msa0881070:CDS | 60.0% |
| GATGTTCCCTCTCAGGCTGC+TGG | - | chr6_1:28053791-28053810 | Msa0881070:intron | 60.0% | |
| AAGGAGCCAGCAGCCTGAGA+GGG | + | chr6_1:28053800-28053819 | None:intergenic | 60.0% | |
| TAAGGAGCCAGCAGCCTGAG+AGG | + | chr6_1:28053801-28053820 | None:intergenic | 60.0% | |
| !! | TCTCAGGCTGCTGGCTCCTT+AGG | - | chr6_1:28053800-28053819 | Msa0881070:intron | 60.0% |
| !! | ACAGGAGCAGGTGATGGGGC+TGG | - | chr6_1:28053878-28053897 | Msa0881070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28051714 | 28054873 | 28051714 | ID=Msa0881070;Name=Msa0881070 |
| chr6_1 | mRNA | 28051714 | 28054873 | 28051714 | ID=Msa0881070-mRNA-1;Parent=Msa0881070;Name=Msa0881070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=72|1|1|1|1|1|5|362|351 |
| chr6_1 | exon | 28051714 | 28052129 | 28051714 | ID=Msa0881070-mRNA-1:exon:6992;Parent=Msa0881070-mRNA-1 |
| chr6_1 | exon | 28052375 | 28052448 | 28052375 | ID=Msa0881070-mRNA-1:exon:6991;Parent=Msa0881070-mRNA-1 |
| chr6_1 | exon | 28052544 | 28052781 | 28052544 | ID=Msa0881070-mRNA-1:exon:6990;Parent=Msa0881070-mRNA-1 |
| chr6_1 | exon | 28053737 | 28053806 | 28053737 | ID=Msa0881070-mRNA-1:exon:6989;Parent=Msa0881070-mRNA-1 |
| chr6_1 | exon | 28054182 | 28054873 | 28054182 | ID=Msa0881070-mRNA-1:exon:6988;Parent=Msa0881070-mRNA-1 |
| chr6_1 | five_prime_UTR | 28054802 | 28054873 | 28054802 | ID=Msa0881070-mRNA-1:five_prime_utr;Parent=Msa0881070-mRNA-1 |
| chr6_1 | CDS | 28054182 | 28054801 | 28054182 | ID=Msa0881070-mRNA-1:cds;Parent=Msa0881070-mRNA-1 |
| chr6_1 | CDS | 28053737 | 28053806 | 28053737 | ID=Msa0881070-mRNA-1:cds;Parent=Msa0881070-mRNA-1 |
| chr6_1 | CDS | 28052544 | 28052781 | 28052544 | ID=Msa0881070-mRNA-1:cds;Parent=Msa0881070-mRNA-1 |
| chr6_1 | CDS | 28052375 | 28052448 | 28052375 | ID=Msa0881070-mRNA-1:cds;Parent=Msa0881070-mRNA-1 |
| chr6_1 | CDS | 28052076 | 28052129 | 28052076 | ID=Msa0881070-mRNA-1:cds;Parent=Msa0881070-mRNA-1 |
| chr6_1 | three_prime_UTR | 28051714 | 28052075 | 28051714 | ID=Msa0881070-mRNA-1:three_prime_utr;Parent=Msa0881070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
