AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519820 MtrunA17_Chr3g0135161 93.592 671 27 6 1 668 1 658 0.0 1238
Msa0519820 MtrunA17_Chr1g0152161 60.559 715 178 26 1 667 1 659 0.0 729
Msa0519820 MtrunA17_Chr4g0054351 52.168 692 271 18 1 667 1 657 0.0 554
Msa0519820 MtrunA17_Chr8g0343851 47.695 499 187 12 18 505 3 438 2.68e-135 409
Msa0519820 MtrunA17_Chr5g0400871 46.589 513 189 11 1 504 4 440 2.12e-128 390
Msa0519820 MtrunA17_Chr7g0249621 77.830 212 46 1 302 513 248 458 4.67e-113 355
Msa0519820 MtrunA17_Chr4g0032631 67.200 250 63 3 254 502 122 353 1.18e-112 349
Msa0519820 MtrunA17_Chr4g0072291 62.687 268 88 2 239 494 73 340 1.48e-112 348
Msa0519820 MtrunA17_Chr2g0328971 64.400 250 64 3 254 502 129 354 4.93e-107 334
Msa0519820 MtrunA17_Chr5g0412151 77.273 198 44 1 304 501 215 411 1.03e-97 310
Msa0519820 MtrunA17_Chr4g0073521 69.822 169 48 1 312 480 46 211 1.82e-79 256
Msa0519820 MtrunA17_Chr7g0216601 62.766 188 69 1 293 480 46 232 1.77e-77 253
Msa0519820 MtrunA17_Chr6g0452911 58.411 214 74 3 274 480 30 235 4.30e-74 243
Msa0519820 MtrunA17_Chr8g0355191 59.615 208 74 4 280 480 15 219 8.89e-73 241
Msa0519820 MtrunA17_Chr4g0002011 68.639 169 53 0 312 480 35 203 1.47e-72 237
Msa0519820 MtrunA17_Chr8g0367311 63.687 179 58 2 351 523 20 197 4.99e-72 233
Msa0519820 MtrunA17_Chr8g0355181 58.586 198 70 3 312 509 55 240 1.68e-67 226
Msa0519820 MtrunA17_Chr8g0362541 59.184 196 63 2 299 480 55 247 1.50e-66 224
Msa0519820 MtrunA17_Chr4g0053181 54.167 168 66 3 316 483 176 332 2.07e-43 164
Msa0519820 MtrunA17_Chr5g0401891 54.167 168 66 3 316 483 152 308 7.53e-43 162
Msa0519820 MtrunA17_Chr7g0257361 57.895 152 56 2 289 440 36 179 8.64e-43 159
Msa0519820 MtrunA17_Chr2g0305821 64.000 125 40 2 304 426 36 157 3.57e-42 150
Msa0519820 MtrunA17_Chr7g0263581 51.190 168 71 3 316 483 139 295 4.48e-41 156
Msa0519820 MtrunA17_Chr4g0030191 51.190 168 71 3 316 483 131 287 7.54e-41 155
Msa0519820 MtrunA17_Chr2g0325911 41.739 230 92 8 270 483 72 275 1.05e-33 134
Msa0519820 MtrunA17_Chr2g0305831 43.165 139 62 4 422 545 1 137 7.23e-25 103
Msa0519820 MtrunA17_Chr3g0126151 47.368 95 49 1 364 458 47 140 2.83e-22 93.2
Msa0519820 MtrunA17_Chr8g0367321 87.179 39 5 0 311 349 153 191 4.10e-19 86.3
Msa0519820 MtrunA17_Chr1g0170761 40.972 144 74 3 292 435 113 245 5.63e-19 89.4
Msa0519820 MtrunA17_Chr1g0158971 53.030 66 27 2 410 475 109 170 2.34e-11 65.9
Msa0519820 MtrunA17_Chr8g0375031 53.125 64 29 1 419 482 125 187 2.55e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519820 AT4G37750.1 51.277 548 162 15 1 509 1 482 1.04e-158 469
Msa0519820 AT1G72570.1 70.782 243 69 2 257 498 164 405 8.51e-120 363
Msa0519820 AT1G51190.1 67.857 252 75 3 254 502 129 377 2.42e-115 357
Msa0519820 AT3G20840.1 68.400 250 71 4 254 502 126 368 3.18e-113 352
Msa0519820 AT5G57390.2 77.889 199 44 0 296 494 65 263 7.06e-113 347
Msa0519820 AT5G57390.1 77.889 199 44 0 296 494 183 381 7.88e-112 348
Msa0519820 AT5G17430.2 68.163 245 76 1 304 548 136 378 1.55e-109 341
Msa0519820 AT5G17430.1 68.163 245 76 1 304 548 198 440 4.34e-109 342
Msa0519820 AT5G65510.4 68.372 215 68 0 289 503 146 360 5.75e-93 295
Msa0519820 AT5G65510.2 68.372 215 68 0 289 503 204 418 7.69e-93 296
Msa0519820 AT5G65510.1 68.372 215 68 0 289 503 204 418 7.69e-93 296
Msa0519820 AT5G10510.7 75.253 198 48 1 304 501 218 414 9.53e-93 298
Msa0519820 AT5G10510.5 75.253 198 48 1 304 501 218 414 9.53e-93 298
Msa0519820 AT5G10510.1 75.253 198 48 1 304 501 241 437 1.52e-92 298
Msa0519820 AT5G10510.6 75.253 198 48 1 304 501 256 452 2.02e-92 298
Msa0519820 AT5G10510.4 75.253 198 48 1 304 501 256 452 2.02e-92 298
Msa0519820 AT5G10510.2 74.747 198 46 2 304 501 218 411 2.64e-90 291
Msa0519820 AT5G10510.3 67.431 218 50 2 304 501 256 472 3.36e-86 282
Msa0519820 AT5G65510.3 71.429 161 46 0 289 449 146 306 6.73e-80 256
Msa0519820 AT5G65510.3 42.667 75 35 1 417 483 172 246 5.50e-11 64.7
Msa0519820 AT3G54320.3 67.816 174 55 1 312 485 61 233 2.79e-71 238
Msa0519820 AT3G54320.1 67.816 174 55 1 312 485 61 233 3.96e-71 238
Msa0519820 AT1G79700.2 68.639 169 53 0 312 480 48 216 1.83e-65 218
Msa0519820 AT1G16060.1 55.411 231 98 1 272 497 14 244 1.49e-64 217
Msa0519820 AT1G79700.1 64.497 169 50 1 312 480 48 206 8.98e-58 197
Msa0519820 AT3G54320.4 68.889 135 41 1 351 485 34 167 2.76e-52 185
Msa0519820 AT3G54320.5 68.889 135 41 1 351 485 34 167 2.76e-52 185
Msa0519820 AT1G79700.3 67.692 130 42 0 351 480 11 140 2.34e-44 159
Msa0519820 AT4G36920.1 49.754 203 90 4 281 483 97 287 4.85e-44 164
Msa0519820 AT4G36920.2 49.754 203 90 4 281 483 97 287 4.85e-44 164
Msa0519820 AT1G79700.4 67.969 128 41 0 353 480 7 134 9.86e-44 157
Msa0519820 AT5G67180.2 43.830 235 111 4 260 494 50 263 1.35e-43 159
Msa0519820 AT1G16060.3 66.917 133 44 0 348 480 20 152 4.39e-43 157
Msa0519820 AT5G67180.3 43.348 233 111 4 260 492 50 261 9.11e-43 156
Msa0519820 AT5G67180.1 43.830 235 111 4 260 494 50 263 9.21e-43 158
Msa0519820 AT2G41710.1 57.237 152 57 2 289 440 46 189 1.16e-42 160
Msa0519820 AT2G41710.4 57.237 152 57 2 289 440 46 189 2.03e-42 160
Msa0519820 AT2G41710.2 55.414 157 57 3 289 440 46 194 2.53e-40 153
Msa0519820 AT2G28550.3 50.595 168 72 3 316 483 153 309 1.08e-39 152
Msa0519820 AT2G41710.3 46.524 187 57 3 289 440 46 224 3.70e-36 142
Msa0519820 AT3G54320.2 70.968 93 26 1 393 485 1 92 8.78e-33 128
Msa0519820 AT2G28550.4 49.645 141 60 3 316 456 153 282 2.28e-32 128
Msa0519820 AT5G67180.4 39.381 226 115 5 260 485 50 253 4.97e-32 125
Msa0519820 AT1G16060.2 60.909 110 38 1 393 497 1 110 1.13e-31 122
Msa0519820 AT1G16060.4 60.909 110 38 1 393 497 1 110 1.13e-31 122
Msa0519820 AT1G16060.6 60.909 110 38 1 393 497 1 110 1.13e-31 122
Msa0519820 AT1G16060.5 60.909 110 38 1 393 497 1 110 1.13e-31 122
Msa0519820 AT2G28550.1 46.429 168 64 4 316 483 153 294 1.43e-31 128
Msa0519820 AT2G28550.2 49.606 127 53 3 316 442 153 268 6.42e-28 114
Msa0519820 AT2G28550.6 49.606 127 53 3 316 442 153 268 6.42e-28 114
Msa0519820 AT2G39250.2 42.857 112 54 2 317 428 109 210 1.87e-24 103
Msa0519820 AT2G39250.1 42.857 112 54 2 317 428 109 210 5.48e-24 103
Msa0519820 AT2G39250.1 29.368 269 150 12 398 659 88 323 6.39e-11 64.7
Msa0519820 AT2G28550.5 45.865 133 56 2 351 483 12 128 2.73e-22 97.8
Msa0519820 AT5G60120.6 39.655 174 78 6 300 473 145 291 4.77e-21 97.4
Msa0519820 AT5G60120.4 45.736 129 59 3 313 441 157 274 5.24e-21 96.3
Msa0519820 AT5G60120.3 45.736 129 59 3 313 441 157 274 5.24e-21 96.3
Msa0519820 AT5G60120.5 45.736 129 59 3 313 441 157 274 5.24e-21 96.3
Msa0519820 AT5G60120.1 39.655 174 78 6 300 473 145 291 5.87e-21 97.1
Msa0519820 AT5G60120.2 39.655 174 78 6 300 473 145 291 7.94e-21 97.1
Msa0519820 AT3G54990.2 46.729 107 47 2 316 422 122 218 2.71e-19 88.2
Msa0519820 AT3G54990.1 46.729 107 47 2 316 422 122 218 1.07e-18 88.6
Msa0519820 AT1G16060.7 62.025 79 25 1 424 497 10 88 6.31e-17 80.1

Find 147 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGGTTGGTTGGGAAATT+TGG 0.137392 3_4:-72126296 Msa0519820:three_prime_UTR
TTGGATGATTCTACCAAAAT+AGG 0.146027 3_4:-72126654 Msa0519820:CDS
TGAATGAATGTTAGGACTTT+TGG 0.149737 3_4:-72126265 Msa0519820:three_prime_UTR
GCTAGCAATACTCTTCTTTC+TGG 0.154896 3_4:-72126945 Msa0519820:CDS
CTAATGTTGCTGTTAGTTCT+TGG 0.205616 3_4:-72126509 Msa0519820:CDS
TATCTTTGTTTACTTGAAAA+AGG 0.214410 3_4:+72129683 None:intergenic
AGGAAATCTATTGACACTTT+TGG 0.225909 3_4:-72128550 Msa0519820:CDS
GTAGATATGAAGCACATTTA+TGG 0.228782 3_4:-72128306 Msa0519820:CDS
CCTCTAATGGTGCTTGAAAT+AGG 0.284929 3_4:+72128899 None:intergenic
CTGAAGAAGTTTGAGTTTGT+TGG 0.307916 3_4:+72129529 None:intergenic
AAGCCATTGCCTCACTTTCA+TGG 0.308137 3_4:+72129064 None:intergenic
CTGCAAAACCATCTTCCATT+TGG 0.319566 3_4:+72126791 None:intergenic
TGTTATGGTGTTCCTGAAAA+TGG 0.323560 3_4:-72129444 Msa0519820:CDS
AACTCAAGGTGGTTATGATA+TGG 0.323727 3_4:-72127983 Msa0519820:CDS
TCTTTAGATTCTACCTCTAA+TGG 0.324936 3_4:+72128886 None:intergenic
CCAAGAAAATCCTCTAGTTT+AGG 0.328835 3_4:+72129120 None:intergenic
TTTGATTCCATTGAAGGCTT+TGG 0.329887 3_4:+72126540 None:intergenic
TATTCTCCATTAGGCATAGA+TGG 0.336451 3_4:-72128333 Msa0519820:intron
TAACCAAGTGCTGCATAATA+TGG 0.342134 3_4:+72128928 None:intergenic
TCATTTCCTCAAGTTGAGTA+TGG 0.344608 3_4:+72127780 None:intergenic
ATAGGCATAACAGTCAAATT+AGG 0.347664 3_4:+72129405 None:intergenic
TCAAGCAGCTCTTAAGTATT+GGG 0.347974 3_4:-72127935 Msa0519820:CDS
TATATATATGTTTGTTTGGT+TGG 0.349105 3_4:-72129897 Msa0519820:five_prime_UTR
AGGATTAATGAATGAATGTT+AGG 0.358146 3_4:-72126273 Msa0519820:three_prime_UTR
GGTGGTTCTTCTTCTGTTGT+TGG 0.362895 3_4:-72128742 Msa0519820:CDS
CCTATTTCAAGCACCATTAG+AGG 0.368785 3_4:-72128899 Msa0519820:CDS
CCTAGACAGATCTCACCTTC+TGG 0.379310 3_4:-72128643 Msa0519820:CDS
CCTTAACAAACTTAGCCTTT+TGG 0.380384 3_4:-72126201 Msa0519820:three_prime_UTR
CGCTTCAGCAGCTTCTCCAT+TGG 0.384097 3_4:+72126839 None:intergenic
AGAGTTACTACTGTCATTCA+TGG 0.391896 3_4:+72129638 None:intergenic
CAGCAGCTTCTCCATTGGTC+TGG 0.395700 3_4:+72126844 None:intergenic
GGTAACAAGGACCTTTATCT+TGG 0.399524 3_4:-72127436 Msa0519820:CDS
GTTCCCAAATGCCTCAAAAC+TGG 0.400777 3_4:-72128837 Msa0519820:CDS
AATCATAACAACAATTGGTT+AGG 0.403766 3_4:-72129606 Msa0519820:CDS
TAGATATGAAGCACATTTAT+GGG 0.403876 3_4:-72128305 Msa0519820:CDS
TGGTATTAATTCAGTTGGTT+TGG 0.404298 3_4:-72126673 Msa0519820:CDS
GAAGAGAAATAGATTCTGTT+AGG 0.405652 3_4:-72129723 Msa0519820:five_prime_UTR
GCAAGGATTGGAAGAGTTGC+TGG 0.408354 3_4:-72127457 Msa0519820:CDS
ACTCTTTCCAAAGCCTTCAA+TGG 0.408843 3_4:-72126547 Msa0519820:CDS
TGGAACAGAATCAGTGACTA+TGG 0.411439 3_4:-72128623 Msa0519820:CDS
ACAACAATCATAACAACAAT+TGG 0.411645 3_4:-72129611 Msa0519820:CDS
TACTGAATGTTCCAAGATAA+AGG 0.412580 3_4:+72127425 None:intergenic
AGTTTATATATATGTTTGTT+TGG 0.414467 3_4:-72129901 Msa0519820:five_prime_UTR
TCTTCTGTTGTTGGTACTGT+AGG 0.414963 3_4:-72128733 Msa0519820:CDS
TGGATGATTCTACCAAAATA+GGG 0.417120 3_4:-72126653 Msa0519820:CDS
AAGGAAGGACAAACAAGAAA+AGG 0.424488 3_4:-72128268 Msa0519820:CDS
TTCAACACACATAAACTTCC+CGG 0.425153 3_4:-72127908 Msa0519820:intron
TATGCAGCACTTGGTTATCA+TGG 0.425353 3_4:-72128922 Msa0519820:CDS
CCAAAAGGCTAAGTTTGTTA+AGG 0.429179 3_4:+72126201 None:intergenic
ACTAGCATGGGGAGTCATAA+TGG 0.434049 3_4:-72128775 Msa0519820:CDS
AGGAGAAGAAGTAGAAATGT+GGG 0.436963 3_4:+72129569 None:intergenic
TCAATAGATTTCCTATGAAT+AGG 0.438789 3_4:+72128559 None:intergenic
ACAAACTCAACAATCTGTTA+TGG 0.440794 3_4:-72129459 Msa0519820:CDS
ATGAATGAGAATATGCATAT+TGG 0.443517 3_4:-72126166 Msa0519820:three_prime_UTR
ATCAAGCAGCTCTTAAGTAT+TGG 0.446724 3_4:-72127936 Msa0519820:CDS
TTCTTTCTGGTCAGCATGCA+AGG 0.453728 3_4:-72126932 Msa0519820:CDS
AGTGATCCATCTGACTTGAT+AGG 0.454921 3_4:+72129387 None:intergenic
AAACTTGTCACCAATGATGA+TGG 0.469910 3_4:+72126615 None:intergenic
TAATGATTCCAAATGGAAGA+TGG 0.471281 3_4:-72126799 Msa0519820:CDS
ATGTCTTTACAAGACCTTGT+TGG 0.474882 3_4:-72126693 Msa0519820:CDS
CTTTGTATCATGGAAGCTCT+TGG 0.479184 3_4:-72129366 Msa0519820:CDS
AAAATCATTGTGAATTCTGA+TGG 0.483714 3_4:-72126741 Msa0519820:CDS
GGGAAGTTTATGTGTGTTGA+AGG 0.488674 3_4:+72127910 None:intergenic
CTTGTTGGTATTAATTCAGT+TGG 0.489454 3_4:-72126678 Msa0519820:CDS
AGAACTAACAGCAACATTAG+TGG 0.490687 3_4:+72126512 None:intergenic
ACGAAAATAATGATTCCAAA+TGG 0.491698 3_4:-72126806 Msa0519820:CDS
GTCAAAAGCAGCCTATTCAT+AGG 0.492472 3_4:-72128570 Msa0519820:CDS
GGTAGGTGGCAAGCAAGGAT+TGG 0.507927 3_4:-72127469 Msa0519820:CDS
CATCCATATTATGCAGCACT+TGG 0.508376 3_4:-72128931 Msa0519820:CDS
TTTCTTGGTGGTGCAACAAT+GGG 0.508995 3_4:-72129105 Msa0519820:CDS
GGGTTGGTTGGGAAATTTGG+AGG 0.511636 3_4:-72126293 Msa0519820:three_prime_UTR
AGATGGATCACTTTGTATCA+TGG 0.512780 3_4:-72129376 Msa0519820:CDS
ACACAGCTAGATTGAGAACC+AGG 0.513570 3_4:+72128673 None:intergenic
AGTCATAATGGTGGAGCTGG+TGG 0.513615 3_4:-72128763 Msa0519820:CDS
TCCATTAGGCATAGATGGAC+TGG 0.517509 3_4:-72128328 Msa0519820:intron
ATATGATGTTGAAAGGATCA+TGG 0.520797 3_4:-72126967 Msa0519820:CDS
AATGAGAATATGCATATTGG+AGG 0.520951 3_4:-72126163 None:intergenic
CATAATGGTGGAGCTGGTGG+TGG 0.521042 3_4:-72128760 Msa0519820:CDS
GAGGAGAAGAAGTAGAAATG+TGG 0.523031 3_4:+72129568 None:intergenic
GGGAGTCATAATGGTGGAGC+TGG 0.523283 3_4:-72128766 Msa0519820:CDS
CAAGGAGATATAATCTCTCT+AGG 0.523503 3_4:+72126401 None:intergenic
GTCTGAAAGATTCTGAAAGA+AGG 0.527254 3_4:+72128965 None:intergenic
GGCTTTGGAAAGAGTAGTGA+GGG 0.530598 3_4:+72126555 None:intergenic
AAAAGAGGAGCTGCTAAGCT+TGG 0.531048 3_4:-72128592 Msa0519820:CDS
AAGCTGAAGCAGAAGAATAG+AGG 0.531685 3_4:-72129826 Msa0519820:five_prime_UTR
GAGAACCAGGGCTCATTGAA+AGG 0.533035 3_4:+72128686 None:intergenic
CCAGAAGGTGAGATCTGTCT+AGG 0.534044 3_4:+72128643 None:intergenic
TATCTAAATATGATGTTGAA+AGG 0.534738 3_4:-72126974 Msa0519820:CDS
CATTCCAACATATAGCCAAA+AGG 0.534863 3_4:+72126186 None:intergenic
TATTCATGAACTTCGGTCTG+TGG 0.536183 3_4:+72126891 None:intergenic
GTTGAGTTTGTGAAGTGAGA+AGG 0.536370 3_4:+72129471 None:intergenic
GACAAATTGATTGAAGATGC+TGG 0.538955 3_4:+72126456 None:intergenic
TTAAGCCTTTCAATGAGCCC+TGG 0.541546 3_4:-72128691 Msa0519820:CDS
CTGAAAGAAGGTCAAGGGAA+TGG 0.549375 3_4:+72128977 None:intergenic
ATGGGATAACAGTTGCAAGA+AGG 0.549719 3_4:-72128287 Msa0519820:CDS
ACAATGGGTAGTGATGAATA+TGG 0.550458 3_4:-72129090 Msa0519820:CDS
CAGAGAACATCTCAGTATAG+AGG 0.550832 3_4:-72128526 Msa0519820:CDS
TGCAAGGAGAATCAAAGATA+AGG 0.550976 3_4:-72126916 Msa0519820:CDS
ATTTGTGTAGCTACTTGTGA+AGG 0.555126 3_4:+72126483 None:intergenic
TTGCTTGCCACCTACCATGT+TGG 0.556430 3_4:+72127476 None:intergenic
ATGATTATATTCATGAACTT+CGG 0.556488 3_4:+72126884 None:intergenic
AATGAAGAATATGACAAGGC+AGG 0.556697 3_4:-72127762 Msa0519820:CDS
CAGATGAACACTACTAGCAT+GGG 0.557648 3_4:-72128787 Msa0519820:CDS
TGGAAGAGTTGCTGGTAACA+AGG 0.559839 3_4:-72127449 Msa0519820:CDS
GCAGATGAACACTACTAGCA+TGG 0.560674 3_4:-72128788 Msa0519820:CDS
TTGTAACAGCATTTGCTCCA+CGG 0.565794 3_4:+72127006 None:intergenic
AGGCTTTGGAAAGAGTAGTG+AGG 0.568883 3_4:+72126554 None:intergenic
AAGATTCTGAAAGAAGGTCA+AGG 0.578912 3_4:+72128971 None:intergenic
CACAAGTAGCTACACAAATG+AGG 0.580768 3_4:-72126479 Msa0519820:CDS
GTTATGCCTATCAAGTCAGA+TGG 0.582455 3_4:-72129393 Msa0519820:CDS
AATATGTTGCACATTTGAGA+AGG 0.587308 3_4:-72127739 Msa0519820:intron
TAGCCATGAAAGTGAGGCAA+TGG 0.587506 3_4:-72129067 Msa0519820:CDS
GAAAGAAGCAGGAACCGTGT+TGG 0.594498 3_4:+72129503 None:intergenic
GTTGTTGGTACTGTAGGAAG+TGG 0.597270 3_4:-72128727 Msa0519820:CDS
AAACTACCATACTCAACTTG+AGG 0.599024 3_4:-72127786 Msa0519820:CDS
ATCTTCATCTCCTAAACTAG+AGG 0.599319 3_4:-72129130 Msa0519820:CDS
AACATGGTAGGTGGCAAGCA+AGG 0.600209 3_4:-72127474 Msa0519820:CDS
CAATGTACAGAGGCGTGACA+AGG 0.600518 3_4:-72127592 Msa0519820:intron
GTCACTGATTCTGTTCCAGA+AGG 0.600695 3_4:+72128628 None:intergenic
GCAGACATCACCAACATGGT+AGG 0.604873 3_4:-72127486 Msa0519820:intron
ATGTAACACAAGGGTAACAT+TGG 0.605982 3_4:-72126224 Msa0519820:three_prime_UTR
AACTTCTTCAGTTTCCAACA+CGG 0.606767 3_4:-72129517 Msa0519820:CDS
AGATTCTGAAAGAAGGTCAA+GGG 0.611616 3_4:+72128972 None:intergenic
CTCAGTATAGAGGTGTCACA+AGG 0.617014 3_4:-72128516 Msa0519820:intron
CAAGCAGCTCTTAAGTATTG+GGG 0.623947 3_4:-72127934 Msa0519820:CDS
CAAACAAGAAAAGGAAGACA+AGG 0.624646 3_4:-72128259 Msa0519820:CDS
AATGTATCGAGCCAGACCAA+TGG 0.631591 3_4:-72126855 Msa0519820:CDS
TCTAGTTTAGGAGATGAAGA+TGG 0.633764 3_4:+72129132 None:intergenic
GACATCACCAACATGGTAGG+TGG 0.639099 3_4:-72127483 Msa0519820:CDS
ATGAGAATATGCATATTGGA+GGG 0.640086 3_4:-72126162 None:intergenic
TGGTCTGTATTAGCTTGATG+AGG 0.640420 3_4:+72128997 None:intergenic
GATAACAGTTGCAAGAAGGA+AGG 0.640507 3_4:-72128283 Msa0519820:CDS
AAAAGCAGTGGATTCTCAAG+GGG 0.641907 3_4:-72127620 Msa0519820:CDS
ATATGGTAGCCATGAAAGTG+AGG 0.643799 3_4:-72129073 Msa0519820:CDS
CTTGGTAGATCACAATCACA+AGG 0.655160 3_4:-72129348 Msa0519820:intron
TTTGTCATAACATAGTAACA+AGG 0.658655 3_4:+72126383 None:intergenic
GTTACATAAAGAAAACAAAG+TGG 0.660708 3_4:+72126240 None:intergenic
CAACTGAATTAATACCAACA+AGG 0.665562 3_4:+72126679 None:intergenic
GTAGCAGCAATAAAATTCCG+TGG 0.666673 3_4:-72127023 Msa0519820:CDS
GGAGAAGAAGTAGAAATGTG+GGG 0.675273 3_4:+72129570 None:intergenic
AACAGAATCAGTGACTATGG+AGG 0.680741 3_4:-72128620 Msa0519820:CDS
AGCATGGGGAGTCATAATGG+TGG 0.689715 3_4:-72128772 Msa0519820:CDS
AGGAAATGAAGAATATGACA+AGG 0.693051 3_4:-72127766 Msa0519820:CDS
GGGAACTAGAAACATCAACA+TGG 0.697253 3_4:+72128854 None:intergenic
CACAGCTAGATTGAGAACCA+GGG 0.711589 3_4:+72128674 None:intergenic
AGATGAACACTACTAGCATG+GGG 0.712889 3_4:-72128786 Msa0519820:CDS
AGGGGTGCATCAATGTACAG+AGG 0.720794 3_4:-72127602 Msa0519820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATAACAACTTTTTTT+TGG + chr3_4:72126875-72126894 None:intergenic 10.0%
!! AAAGAAAAAAAATTACAAAA+AGG + chr3_4:72129016-72129035 None:intergenic 10.0%
!!! GGATATTTATTTTTTAAAAA+GGG - chr3_4:72129797-72129816 Msa0519820:five_prime_UTR 10.0%
!!! TAAAAATAACAACTTTTTTT+TGG + chr3_4:72126875-72126894 None:intergenic 10.0%
!! AAAGAAAAAAAATTACAAAA+AGG + chr3_4:72129016-72129035 None:intergenic 10.0%
!!! GGATATTTATTTTTTAAAAA+GGG - chr3_4:72129797-72129816 Msa0519820:five_prime_UTR 10.0%
!! AGTTTATATATATGTTTGTT+TGG - chr3_4:72126209-72126228 Msa0519820:three_prime_UTR 15.0%
!! TCTTTAATTAATGTTAGATA+TGG - chr3_4:72126897-72126916 Msa0519820:CDS 15.0%
!!! TGTTAGTATAAAATTTTAGT+AGG + chr3_4:72127922-72127941 None:intergenic 15.0%
!! ACAAATTCAAATGAAAAAAA+GGG + chr3_4:72128562-72128581 None:intergenic 15.0%
!!! TTGTAATTTTTTTTCTTTCT+TGG - chr3_4:72129018-72129037 Msa0519820:CDS 15.0%
!! TATGTTATGACAAAAAAAAA+GGG - chr3_4:72129736-72129755 Msa0519820:five_prime_UTR 15.0%
!! ATTATGTATTGAAAAACATA+TGG - chr3_4:72129774-72129793 Msa0519820:five_prime_UTR 15.0%
!! TTATGTATTGAAAAACATAT+GGG - chr3_4:72129775-72129794 Msa0519820:five_prime_UTR 15.0%
!!! GGGATATTTATTTTTTAAAA+AGG - chr3_4:72129796-72129815 Msa0519820:five_prime_UTR 15.0%
!!! ATTTATTTTTTAAAAAGGGT+TGG - chr3_4:72129801-72129820 Msa0519820:five_prime_UTR 15.0%
!! AGTTTATATATATGTTTGTT+TGG - chr3_4:72126209-72126228 Msa0519820:three_prime_UTR 15.0%
!! TCTTTAATTAATGTTAGATA+TGG - chr3_4:72126897-72126916 Msa0519820:CDS 15.0%
!!! TGTTAGTATAAAATTTTAGT+AGG + chr3_4:72127922-72127941 None:intergenic 15.0%
!! ACAAATTCAAATGAAAAAAA+GGG + chr3_4:72128562-72128581 None:intergenic 15.0%
!!! TTGTAATTTTTTTTCTTTCT+TGG - chr3_4:72129018-72129037 Msa0519820:CDS 15.0%
!! TATGTTATGACAAAAAAAAA+GGG - chr3_4:72129736-72129755 Msa0519820:five_prime_UTR 15.0%
!! ATTATGTATTGAAAAACATA+TGG - chr3_4:72129774-72129793 Msa0519820:five_prime_UTR 15.0%
!! TTATGTATTGAAAAACATAT+GGG - chr3_4:72129775-72129794 Msa0519820:five_prime_UTR 15.0%
!!! GGGATATTTATTTTTTAAAA+AGG - chr3_4:72129796-72129815 Msa0519820:five_prime_UTR 15.0%
!!! ATTTATTTTTTAAAAAGGGT+TGG - chr3_4:72129801-72129820 Msa0519820:five_prime_UTR 15.0%
!! TATATATATGTTTGTTTGGT+TGG - chr3_4:72126213-72126232 Msa0519820:three_prime_UTR 20.0%
!!! TATCTTTGTTTACTTGAAAA+AGG + chr3_4:72126430-72126449 None:intergenic 20.0%
!!! AAATAACAACTTTTTTTTGG+TGG + chr3_4:72126872-72126891 None:intergenic 20.0%
!! AAAACAACATAATCATTACA+GGG + chr3_4:72126923-72126942 None:intergenic 20.0%
!!! TGTTTGTTTTTTCTTTTACT+TGG + chr3_4:72128039-72128058 None:intergenic 20.0%
!!! GCAATTATTTTGTAGTAAAA+AGG - chr3_4:72128413-72128432 Msa0519820:intron 20.0%
!! TAATTATATGACAATCATGA+TGG - chr3_4:72128442-72128461 Msa0519820:intron 20.0%
!! GACAAATTCAAATGAAAAAA+AGG + chr3_4:72128563-72128582 None:intergenic 20.0%
!!! TTTAAAGTAAAATCCTTCAT+AGG - chr3_4:72128811-72128830 Msa0519820:CDS 20.0%
!! AGTAAATTAAATTCCTATGA+AGG + chr3_4:72128827-72128846 None:intergenic 20.0%
!!! TTTCTTGGAAATGAAATTTT+AGG - chr3_4:72129033-72129052 Msa0519820:CDS 20.0%
!! TATCTAAATATGATGTTGAA+AGG - chr3_4:72129136-72129155 Msa0519820:CDS 20.0%
!! ATGATTATATTCATGAACTT+CGG + chr3_4:72129229-72129248 None:intergenic 20.0%
!! CTATGTTATGACAAAAAAAA+AGG - chr3_4:72129735-72129754 Msa0519820:five_prime_UTR 20.0%
!! ACAAAAAAAAAGGGTAAAAA+GGG - chr3_4:72129745-72129764 Msa0519820:five_prime_UTR 20.0%
!! TATGTATTGAAAAACATATG+GGG - chr3_4:72129776-72129795 Msa0519820:five_prime_UTR 20.0%
!! TATATATATGTTTGTTTGGT+TGG - chr3_4:72126213-72126232 Msa0519820:three_prime_UTR 20.0%
!!! TATCTTTGTTTACTTGAAAA+AGG + chr3_4:72126430-72126449 None:intergenic 20.0%
!!! AAATAACAACTTTTTTTTGG+TGG + chr3_4:72126872-72126891 None:intergenic 20.0%
!! AAAACAACATAATCATTACA+GGG + chr3_4:72126923-72126942 None:intergenic 20.0%
!!! TGTTTGTTTTTTCTTTTACT+TGG + chr3_4:72128039-72128058 None:intergenic 20.0%
!!! GCAATTATTTTGTAGTAAAA+AGG - chr3_4:72128413-72128432 Msa0519820:intron 20.0%
!! TAATTATATGACAATCATGA+TGG - chr3_4:72128442-72128461 Msa0519820:intron 20.0%
!! GACAAATTCAAATGAAAAAA+AGG + chr3_4:72128563-72128582 None:intergenic 20.0%
!!! TTTAAAGTAAAATCCTTCAT+AGG - chr3_4:72128811-72128830 Msa0519820:CDS 20.0%
!! AGTAAATTAAATTCCTATGA+AGG + chr3_4:72128827-72128846 None:intergenic 20.0%
!!! TTTCTTGGAAATGAAATTTT+AGG - chr3_4:72129033-72129052 Msa0519820:CDS 20.0%
!! TATCTAAATATGATGTTGAA+AGG - chr3_4:72129136-72129155 Msa0519820:CDS 20.0%
!! ATGATTATATTCATGAACTT+CGG + chr3_4:72129229-72129248 None:intergenic 20.0%
!! CTATGTTATGACAAAAAAAA+AGG - chr3_4:72129735-72129754 Msa0519820:five_prime_UTR 20.0%
!! ACAAAAAAAAAGGGTAAAAA+GGG - chr3_4:72129745-72129764 Msa0519820:five_prime_UTR 20.0%
!! TATGTATTGAAAAACATATG+GGG - chr3_4:72129776-72129795 Msa0519820:five_prime_UTR 20.0%
! ACAACAATCATAACAACAAT+TGG - chr3_4:72126499-72126518 Msa0519820:CDS 25.0%
! AATCATAACAACAATTGGTT+AGG - chr3_4:72126504-72126523 Msa0519820:CDS 25.0%
! GAAAACAACATAATCATTAC+AGG + chr3_4:72126924-72126943 None:intergenic 25.0%
! TCAATAGATTTCCTATGAAT+AGG + chr3_4:72127554-72127573 None:intergenic 25.0%
!!! GATTTTGTTTATTCTCCATT+AGG - chr3_4:72127768-72127787 Msa0519820:CDS 25.0%
! TAGATATGAAGCACATTTAT+GGG - chr3_4:72127805-72127824 Msa0519820:intron 25.0%
! ATGCATGTTACAGTATATTT+GGG - chr3_4:72127991-72128010 Msa0519820:intron 25.0%
!!! TTTTTTCTTTTACTTGGTGA+AGG + chr3_4:72128033-72128052 None:intergenic 25.0%
!!! GTTTCTAATTTTGACTTTGT+TGG - chr3_4:72128092-72128111 Msa0519820:intron 25.0%
!!! GGTTTTATTTTTTGAACTCA+AGG - chr3_4:72128113-72128132 Msa0519820:intron 25.0%
!!! TTTATTTTTTGAACTCAAGG+TGG - chr3_4:72128116-72128135 Msa0519820:intron 25.0%
!!! ATTTTTAGTAACAATGTTGG+AGG + chr3_4:72128719-72128738 None:intergenic 25.0%
!!! CACATTTTTAGTAACAATGT+TGG + chr3_4:72128722-72128741 None:intergenic 25.0%
! AAGCATTTGAATTATGAACA+AGG - chr3_4:72128756-72128775 Msa0519820:CDS 25.0%
! AGCATTTGAATTATGAACAA+GGG - chr3_4:72128757-72128776 Msa0519820:CDS 25.0%
!!! TGATTGGTTATGCTTTTATA+AGG - chr3_4:72128889-72128908 Msa0519820:CDS 25.0%
!!! ACAAAATTCCACTTTTTCTA+AGG - chr3_4:72128935-72128954 Msa0519820:CDS 25.0%
! ACGAAAATAATGATTCCAAA+TGG - chr3_4:72129304-72129323 Msa0519820:intron 25.0%
! AAAATCATTGTGAATTCTGA+TGG - chr3_4:72129369-72129388 Msa0519820:CDS 25.0%
!!! TTTTTCAAATCCATCATCAT+TGG - chr3_4:72129485-72129504 Msa0519820:CDS 25.0%
! TTTGTCATAACATAGTAACA+AGG + chr3_4:72129730-72129749 None:intergenic 25.0%
! GACAAAAAAAAAGGGTAAAA+AGG - chr3_4:72129744-72129763 Msa0519820:five_prime_UTR 25.0%
!!! ATTTTTTAAAAAGGGTTGGT+TGG - chr3_4:72129805-72129824 Msa0519820:five_prime_UTR 25.0%
!!! TTTTTTAAAAAGGGTTGGTT+GGG - chr3_4:72129806-72129825 Msa0519820:five_prime_UTR 25.0%
! AGGATTAATGAATGAATGTT+AGG - chr3_4:72129837-72129856 Msa0519820:five_prime_UTR 25.0%
! GTTACATAAAGAAAACAAAG+TGG + chr3_4:72129873-72129892 None:intergenic 25.0%
!! TGTTTTCTTTATGTAACACA+AGG - chr3_4:72129876-72129895 Msa0519820:five_prime_UTR 25.0%
!! GTTTTCTTTATGTAACACAA+GGG - chr3_4:72129877-72129896 Msa0519820:five_prime_UTR 25.0%
! ATGAATGAGAATATGCATAT+TGG - chr3_4:72129944-72129963 Msa0519820:five_prime_UTR 25.0%
! ACAACAATCATAACAACAAT+TGG - chr3_4:72126499-72126518 Msa0519820:CDS 25.0%
! AATCATAACAACAATTGGTT+AGG - chr3_4:72126504-72126523 Msa0519820:CDS 25.0%
! GAAAACAACATAATCATTAC+AGG + chr3_4:72126924-72126943 None:intergenic 25.0%
! TCAATAGATTTCCTATGAAT+AGG + chr3_4:72127554-72127573 None:intergenic 25.0%
!!! GATTTTGTTTATTCTCCATT+AGG - chr3_4:72127768-72127787 Msa0519820:CDS 25.0%
! TAGATATGAAGCACATTTAT+GGG - chr3_4:72127805-72127824 Msa0519820:intron 25.0%
! ATGCATGTTACAGTATATTT+GGG - chr3_4:72127991-72128010 Msa0519820:intron 25.0%
!!! TTTTTTCTTTTACTTGGTGA+AGG + chr3_4:72128033-72128052 None:intergenic 25.0%
!!! GTTTCTAATTTTGACTTTGT+TGG - chr3_4:72128092-72128111 Msa0519820:intron 25.0%
!!! GGTTTTATTTTTTGAACTCA+AGG - chr3_4:72128113-72128132 Msa0519820:intron 25.0%
!!! TTTATTTTTTGAACTCAAGG+TGG - chr3_4:72128116-72128135 Msa0519820:intron 25.0%
!!! ATTTTTAGTAACAATGTTGG+AGG + chr3_4:72128719-72128738 None:intergenic 25.0%
!!! CACATTTTTAGTAACAATGT+TGG + chr3_4:72128722-72128741 None:intergenic 25.0%
! AAGCATTTGAATTATGAACA+AGG - chr3_4:72128756-72128775 Msa0519820:CDS 25.0%
! AGCATTTGAATTATGAACAA+GGG - chr3_4:72128757-72128776 Msa0519820:CDS 25.0%
!!! TGATTGGTTATGCTTTTATA+AGG - chr3_4:72128889-72128908 Msa0519820:CDS 25.0%
!!! ACAAAATTCCACTTTTTCTA+AGG - chr3_4:72128935-72128954 Msa0519820:CDS 25.0%
! ACGAAAATAATGATTCCAAA+TGG - chr3_4:72129304-72129323 Msa0519820:intron 25.0%
! AAAATCATTGTGAATTCTGA+TGG - chr3_4:72129369-72129388 Msa0519820:CDS 25.0%
!!! TTTTTCAAATCCATCATCAT+TGG - chr3_4:72129485-72129504 Msa0519820:CDS 25.0%
! TTTGTCATAACATAGTAACA+AGG + chr3_4:72129730-72129749 None:intergenic 25.0%
! GACAAAAAAAAAGGGTAAAA+AGG - chr3_4:72129744-72129763 Msa0519820:five_prime_UTR 25.0%
!!! ATTTTTTAAAAAGGGTTGGT+TGG - chr3_4:72129805-72129824 Msa0519820:five_prime_UTR 25.0%
!!! TTTTTTAAAAAGGGTTGGTT+GGG - chr3_4:72129806-72129825 Msa0519820:five_prime_UTR 25.0%
! AGGATTAATGAATGAATGTT+AGG - chr3_4:72129837-72129856 Msa0519820:five_prime_UTR 25.0%
! GTTACATAAAGAAAACAAAG+TGG + chr3_4:72129873-72129892 None:intergenic 25.0%
!! TGTTTTCTTTATGTAACACA+AGG - chr3_4:72129876-72129895 Msa0519820:five_prime_UTR 25.0%
!! GTTTTCTTTATGTAACACAA+GGG - chr3_4:72129877-72129896 Msa0519820:five_prime_UTR 25.0%
! ATGAATGAGAATATGCATAT+TGG - chr3_4:72129944-72129963 Msa0519820:five_prime_UTR 25.0%
GAAGAGAAATAGATTCTGTT+AGG - chr3_4:72126387-72126406 Msa0519820:three_prime_UTR 30.0%
ACAAACTCAACAATCTGTTA+TGG - chr3_4:72126651-72126670 Msa0519820:CDS 30.0%
! TGAAAGTTGTTACCATTTTC+AGG + chr3_4:72126681-72126700 None:intergenic 30.0%
ATAGGCATAACAGTCAAATT+AGG + chr3_4:72126708-72126727 None:intergenic 30.0%
TCTTTAGATTCTACCTCTAA+TGG + chr3_4:72127227-72127246 None:intergenic 30.0%
! AGGAAATCTATTGACACTTT+TGG - chr3_4:72127560-72127579 Msa0519820:intron 30.0%
GCTTTCTTAAGTTATCATGT+TGG - chr3_4:72127733-72127752 Msa0519820:intron 30.0%
!! ATCATGTTGGTGATTATCTT+TGG - chr3_4:72127746-72127765 Msa0519820:CDS 30.0%
GTAGATATGAAGCACATTTA+TGG - chr3_4:72127804-72127823 Msa0519820:intron 30.0%
!!! GTGTTATTTGTTCATGCTTT+TGG - chr3_4:72127945-72127964 Msa0519820:CDS 30.0%
CATGCATGTTACAGTATATT+TGG - chr3_4:72127990-72128009 Msa0519820:intron 30.0%
AGAAACAGTAATAGCAATGA+TGG + chr3_4:72128078-72128097 None:intergenic 30.0%
AAGCTAACAAGAAAATGCTA+AGG + chr3_4:72128240-72128259 None:intergenic 30.0%
AGGAAATGAAGAATATGACA+AGG - chr3_4:72128344-72128363 Msa0519820:intron 30.0%
AATATGTTGCACATTTGAGA+AGG - chr3_4:72128371-72128390 Msa0519820:intron 30.0%
TATTATTGCAGAAAAAGCAG+TGG - chr3_4:72128478-72128497 Msa0519820:intron 30.0%
ATTTGAATTTGTCACACTGT+TGG - chr3_4:72128570-72128589 Msa0519820:CDS 30.0%
TACTGAATGTTCCAAGATAA+AGG + chr3_4:72128688-72128707 None:intergenic 30.0%
ATAACCAATCACTTGTGTTT+GGG + chr3_4:72128880-72128899 None:intergenic 30.0%
!!! ACTTTTTCTAAGGCTGTAAA+GGG - chr3_4:72128945-72128964 Msa0519820:CDS 30.0%
AAAGGGAATCTCTAATAGAA+TGG - chr3_4:72128962-72128981 Msa0519820:CDS 30.0%
ATCTCTAATAGAATGGTGTA+AGG - chr3_4:72128969-72128988 Msa0519820:CDS 30.0%
ATATGATGTTGAAAGGATCA+TGG - chr3_4:72129143-72129162 Msa0519820:CDS 30.0%
TAATGATTCCAAATGGAAGA+TGG - chr3_4:72129311-72129330 Msa0519820:intron 30.0%
CAACTGAATTAATACCAACA+AGG + chr3_4:72129434-72129453 None:intergenic 30.0%
CTTGTTGGTATTAATTCAGT+TGG - chr3_4:72129432-72129451 Msa0519820:CDS 30.0%
TGGTATTAATTCAGTTGGTT+TGG - chr3_4:72129437-72129456 Msa0519820:CDS 30.0%
TTGGATGATTCTACCAAAAT+AGG - chr3_4:72129456-72129475 Msa0519820:CDS 30.0%
TGGATGATTCTACCAAAATA+GGG - chr3_4:72129457-72129476 Msa0519820:CDS 30.0%
! TGAAAAATGTGTCCCTATTT+TGG + chr3_4:72129472-72129491 None:intergenic 30.0%
!! GCAATTTTTGATTCCATTGA+AGG + chr3_4:72129579-72129598 None:intergenic 30.0%
! TGAATGAATGTTAGGACTTT+TGG - chr3_4:72129845-72129864 Msa0519820:five_prime_UTR 30.0%
! GAATGAATGTTAGGACTTTT+GGG - chr3_4:72129846-72129865 Msa0519820:five_prime_UTR 30.0%
! AATGAATGTTAGGACTTTTG+GGG - chr3_4:72129847-72129866 Msa0519820:five_prime_UTR 30.0%
GAAGAGAAATAGATTCTGTT+AGG - chr3_4:72126387-72126406 Msa0519820:three_prime_UTR 30.0%
ACAAACTCAACAATCTGTTA+TGG - chr3_4:72126651-72126670 Msa0519820:CDS 30.0%
! TGAAAGTTGTTACCATTTTC+AGG + chr3_4:72126681-72126700 None:intergenic 30.0%
ATAGGCATAACAGTCAAATT+AGG + chr3_4:72126708-72126727 None:intergenic 30.0%
TCTTTAGATTCTACCTCTAA+TGG + chr3_4:72127227-72127246 None:intergenic 30.0%
! AGGAAATCTATTGACACTTT+TGG - chr3_4:72127560-72127579 Msa0519820:intron 30.0%
GCTTTCTTAAGTTATCATGT+TGG - chr3_4:72127733-72127752 Msa0519820:intron 30.0%
!! ATCATGTTGGTGATTATCTT+TGG - chr3_4:72127746-72127765 Msa0519820:CDS 30.0%
GTAGATATGAAGCACATTTA+TGG - chr3_4:72127804-72127823 Msa0519820:intron 30.0%
!!! GTGTTATTTGTTCATGCTTT+TGG - chr3_4:72127945-72127964 Msa0519820:CDS 30.0%
CATGCATGTTACAGTATATT+TGG - chr3_4:72127990-72128009 Msa0519820:intron 30.0%
AGAAACAGTAATAGCAATGA+TGG + chr3_4:72128078-72128097 None:intergenic 30.0%
AAGCTAACAAGAAAATGCTA+AGG + chr3_4:72128240-72128259 None:intergenic 30.0%
AGGAAATGAAGAATATGACA+AGG - chr3_4:72128344-72128363 Msa0519820:intron 30.0%
AATATGTTGCACATTTGAGA+AGG - chr3_4:72128371-72128390 Msa0519820:intron 30.0%
TATTATTGCAGAAAAAGCAG+TGG - chr3_4:72128478-72128497 Msa0519820:intron 30.0%
ATTTGAATTTGTCACACTGT+TGG - chr3_4:72128570-72128589 Msa0519820:CDS 30.0%
TACTGAATGTTCCAAGATAA+AGG + chr3_4:72128688-72128707 None:intergenic 30.0%
ATAACCAATCACTTGTGTTT+GGG + chr3_4:72128880-72128899 None:intergenic 30.0%
!!! ACTTTTTCTAAGGCTGTAAA+GGG - chr3_4:72128945-72128964 Msa0519820:CDS 30.0%
AAAGGGAATCTCTAATAGAA+TGG - chr3_4:72128962-72128981 Msa0519820:CDS 30.0%
ATCTCTAATAGAATGGTGTA+AGG - chr3_4:72128969-72128988 Msa0519820:CDS 30.0%
ATATGATGTTGAAAGGATCA+TGG - chr3_4:72129143-72129162 Msa0519820:CDS 30.0%
TAATGATTCCAAATGGAAGA+TGG - chr3_4:72129311-72129330 Msa0519820:intron 30.0%
CAACTGAATTAATACCAACA+AGG + chr3_4:72129434-72129453 None:intergenic 30.0%
CTTGTTGGTATTAATTCAGT+TGG - chr3_4:72129432-72129451 Msa0519820:CDS 30.0%
TGGTATTAATTCAGTTGGTT+TGG - chr3_4:72129437-72129456 Msa0519820:CDS 30.0%
TTGGATGATTCTACCAAAAT+AGG - chr3_4:72129456-72129475 Msa0519820:CDS 30.0%
TGGATGATTCTACCAAAATA+GGG - chr3_4:72129457-72129476 Msa0519820:CDS 30.0%
! TGAAAAATGTGTCCCTATTT+TGG + chr3_4:72129472-72129491 None:intergenic 30.0%
!! GCAATTTTTGATTCCATTGA+AGG + chr3_4:72129579-72129598 None:intergenic 30.0%
! TGAATGAATGTTAGGACTTT+TGG - chr3_4:72129845-72129864 Msa0519820:five_prime_UTR 30.0%
! GAATGAATGTTAGGACTTTT+GGG - chr3_4:72129846-72129865 Msa0519820:five_prime_UTR 30.0%
! AATGAATGTTAGGACTTTTG+GGG - chr3_4:72129847-72129866 Msa0519820:five_prime_UTR 30.0%
AGAGTTACTACTGTCATTCA+TGG + chr3_4:72126475-72126494 None:intergenic 35.0%
AGGAGAAGAAGTAGAAATGT+GGG + chr3_4:72126544-72126563 None:intergenic 35.0%
! TGGTAATGATGATGATGATG+AGG + chr3_4:72126564-72126583 None:intergenic 35.0%
! CTGAAGAAGTTTGAGTTTGT+TGG + chr3_4:72126584-72126603 None:intergenic 35.0%
AACTTCTTCAGTTTCCAACA+CGG - chr3_4:72126593-72126612 Msa0519820:CDS 35.0%
GGTGAAAAATAGAAAGAAGC+AGG + chr3_4:72126621-72126640 None:intergenic 35.0%
TGTTATGGTGTTCCTGAAAA+TGG - chr3_4:72126666-72126685 Msa0519820:CDS 35.0%
AGATGGATCACTTTGTATCA+TGG - chr3_4:72126734-72126753 Msa0519820:CDS 35.0%
! AGCACACAACACATTTTGAA+GGG + chr3_4:72126826-72126845 None:intergenic 35.0%
! AAGCACACAACACATTTTGA+AGG + chr3_4:72126827-72126846 None:intergenic 35.0%
! TCTAGTTTAGGAGATGAAGA+TGG + chr3_4:72126981-72127000 None:intergenic 35.0%
ATCTTCATCTCCTAAACTAG+AGG - chr3_4:72126980-72126999 Msa0519820:CDS 35.0%
! CCAAGAAAATCCTCTAGTTT+AGG + chr3_4:72126993-72127012 None:intergenic 35.0%
! CCTAAACTAGAGGATTTTCT+TGG - chr3_4:72126990-72127009 Msa0519820:CDS 35.0%
! AAACTAGAGGATTTTCTTGG+TGG - chr3_4:72126993-72127012 Msa0519820:CDS 35.0%
ACAATGGGTAGTGATGAATA+TGG - chr3_4:72127020-72127039 Msa0519820:CDS 35.0%
! AGATTCTGAAAGAAGGTCAA+GGG + chr3_4:72127141-72127160 None:intergenic 35.0%
! AAGATTCTGAAAGAAGGTCA+AGG + chr3_4:72127142-72127161 None:intergenic 35.0%
! GTCTGAAAGATTCTGAAAGA+AGG + chr3_4:72127148-72127167 None:intergenic 35.0%
! TAACCAAGTGCTGCATAATA+TGG + chr3_4:72127185-72127204 None:intergenic 35.0%
!!! ATACCAGTTTTGAGGCATTT+GGG + chr3_4:72127279-72127298 None:intergenic 35.0%
!!! AATACCAGTTTTGAGGCATT+TGG + chr3_4:72127280-72127299 None:intergenic 35.0%
ACTATGGAGGCTAAAAAAAG+AGG - chr3_4:72127503-72127522 Msa0519820:intron 35.0%
TATTCTCCATTAGGCATAGA+TGG - chr3_4:72127777-72127796 Msa0519820:CDS 35.0%
AAGGAAGGACAAACAAGAAA+AGG - chr3_4:72127842-72127861 Msa0519820:intron 35.0%
CAAACAAGAAAAGGAAGACA+AGG - chr3_4:72127851-72127870 Msa0519820:intron 35.0%
AACTCAAGGTGGTTATGATA+TGG - chr3_4:72128127-72128146 Msa0519820:intron 35.0%
ATCAAGCAGCTCTTAAGTAT+TGG - chr3_4:72128174-72128193 Msa0519820:intron 35.0%
TCAAGCAGCTCTTAAGTATT+GGG - chr3_4:72128175-72128194 Msa0519820:intron 35.0%
TTCAACACACATAAACTTCC+CGG - chr3_4:72128202-72128221 Msa0519820:intron 35.0%
AAACTACCATACTCAACTTG+AGG - chr3_4:72128324-72128343 Msa0519820:intron 35.0%
!! TCATTTCCTCAAGTTGAGTA+TGG + chr3_4:72128333-72128352 None:intergenic 35.0%
AATGAAGAATATGACAAGGC+AGG - chr3_4:72128348-72128367 Msa0519820:intron 35.0%
! AAAAAGCAGTGGATTCTCAA+GGG - chr3_4:72128489-72128508 Msa0519820:intron 35.0%
! TTTTCCCAAACACAAGTGAT+TGG - chr3_4:72128873-72128892 Msa0519820:CDS 35.0%
CATAACCAATCACTTGTGTT+TGG + chr3_4:72128881-72128900 None:intergenic 35.0%
CTTTACAGCCTTAGAAAAAG+TGG + chr3_4:72128946-72128965 None:intergenic 35.0%
!!! CACTTTTTCTAAGGCTGTAA+AGG - chr3_4:72128944-72128963 Msa0519820:CDS 35.0%
! TGAAATTTTAGGCACTCAAG+AGG - chr3_4:72129044-72129063 Msa0519820:CDS 35.0%
TGCAAGGAGAATCAAAGATA+AGG - chr3_4:72129194-72129213 Msa0519820:intron 35.0%
ATGTCTTTACAAGACCTTGT+TGG - chr3_4:72129417-72129436 Msa0519820:CDS 35.0%
AAACTTGTCACCAATGATGA+TGG + chr3_4:72129498-72129517 None:intergenic 35.0%
TTTGATTCCATTGAAGGCTT+TGG + chr3_4:72129573-72129592 None:intergenic 35.0%
AGAACTAACAGCAACATTAG+TGG + chr3_4:72129601-72129620 None:intergenic 35.0%
! CTAATGTTGCTGTTAGTTCT+TGG - chr3_4:72129601-72129620 Msa0519820:CDS 35.0%
ATTTGTGTAGCTACTTGTGA+AGG + chr3_4:72129630-72129649 None:intergenic 35.0%
GACAAATTGATTGAAGATGC+TGG + chr3_4:72129657-72129676 None:intergenic 35.0%
CAAGGAGATATAATCTCTCT+AGG + chr3_4:72129712-72129731 None:intergenic 35.0%
ATGTAACACAAGGGTAACAT+TGG - chr3_4:72129886-72129905 Msa0519820:five_prime_UTR 35.0%
!! CCAAAAGGCTAAGTTTGTTA+AGG + chr3_4:72129912-72129931 None:intergenic 35.0%
!! CCTTAACAAACTTAGCCTTT+TGG - chr3_4:72129909-72129928 Msa0519820:five_prime_UTR 35.0%
!! TTAGCCTTTTGGCTATATGT+TGG - chr3_4:72129920-72129939 Msa0519820:five_prime_UTR 35.0%
CATTCCAACATATAGCCAAA+AGG + chr3_4:72129927-72129946 None:intergenic 35.0%
AGAGTTACTACTGTCATTCA+TGG + chr3_4:72126475-72126494 None:intergenic 35.0%
AGGAGAAGAAGTAGAAATGT+GGG + chr3_4:72126544-72126563 None:intergenic 35.0%
! TGGTAATGATGATGATGATG+AGG + chr3_4:72126564-72126583 None:intergenic 35.0%
! CTGAAGAAGTTTGAGTTTGT+TGG + chr3_4:72126584-72126603 None:intergenic 35.0%
AACTTCTTCAGTTTCCAACA+CGG - chr3_4:72126593-72126612 Msa0519820:CDS 35.0%
GGTGAAAAATAGAAAGAAGC+AGG + chr3_4:72126621-72126640 None:intergenic 35.0%
TGTTATGGTGTTCCTGAAAA+TGG - chr3_4:72126666-72126685 Msa0519820:CDS 35.0%
AGATGGATCACTTTGTATCA+TGG - chr3_4:72126734-72126753 Msa0519820:CDS 35.0%
! AGCACACAACACATTTTGAA+GGG + chr3_4:72126826-72126845 None:intergenic 35.0%
! AAGCACACAACACATTTTGA+AGG + chr3_4:72126827-72126846 None:intergenic 35.0%
! TCTAGTTTAGGAGATGAAGA+TGG + chr3_4:72126981-72127000 None:intergenic 35.0%
ATCTTCATCTCCTAAACTAG+AGG - chr3_4:72126980-72126999 Msa0519820:CDS 35.0%
! CCAAGAAAATCCTCTAGTTT+AGG + chr3_4:72126993-72127012 None:intergenic 35.0%
! CCTAAACTAGAGGATTTTCT+TGG - chr3_4:72126990-72127009 Msa0519820:CDS 35.0%
! AAACTAGAGGATTTTCTTGG+TGG - chr3_4:72126993-72127012 Msa0519820:CDS 35.0%
ACAATGGGTAGTGATGAATA+TGG - chr3_4:72127020-72127039 Msa0519820:CDS 35.0%
! AGATTCTGAAAGAAGGTCAA+GGG + chr3_4:72127141-72127160 None:intergenic 35.0%
! AAGATTCTGAAAGAAGGTCA+AGG + chr3_4:72127142-72127161 None:intergenic 35.0%
! GTCTGAAAGATTCTGAAAGA+AGG + chr3_4:72127148-72127167 None:intergenic 35.0%
! TAACCAAGTGCTGCATAATA+TGG + chr3_4:72127185-72127204 None:intergenic 35.0%
!!! ATACCAGTTTTGAGGCATTT+GGG + chr3_4:72127279-72127298 None:intergenic 35.0%
!!! AATACCAGTTTTGAGGCATT+TGG + chr3_4:72127280-72127299 None:intergenic 35.0%
ACTATGGAGGCTAAAAAAAG+AGG - chr3_4:72127503-72127522 Msa0519820:intron 35.0%
TATTCTCCATTAGGCATAGA+TGG - chr3_4:72127777-72127796 Msa0519820:CDS 35.0%
AAGGAAGGACAAACAAGAAA+AGG - chr3_4:72127842-72127861 Msa0519820:intron 35.0%
CAAACAAGAAAAGGAAGACA+AGG - chr3_4:72127851-72127870 Msa0519820:intron 35.0%
AACTCAAGGTGGTTATGATA+TGG - chr3_4:72128127-72128146 Msa0519820:intron 35.0%
ATCAAGCAGCTCTTAAGTAT+TGG - chr3_4:72128174-72128193 Msa0519820:intron 35.0%
TCAAGCAGCTCTTAAGTATT+GGG - chr3_4:72128175-72128194 Msa0519820:intron 35.0%
TTCAACACACATAAACTTCC+CGG - chr3_4:72128202-72128221 Msa0519820:intron 35.0%
AAACTACCATACTCAACTTG+AGG - chr3_4:72128324-72128343 Msa0519820:intron 35.0%
!! TCATTTCCTCAAGTTGAGTA+TGG + chr3_4:72128333-72128352 None:intergenic 35.0%
AATGAAGAATATGACAAGGC+AGG - chr3_4:72128348-72128367 Msa0519820:intron 35.0%
! AAAAAGCAGTGGATTCTCAA+GGG - chr3_4:72128489-72128508 Msa0519820:intron 35.0%
! TTTTCCCAAACACAAGTGAT+TGG - chr3_4:72128873-72128892 Msa0519820:CDS 35.0%
CATAACCAATCACTTGTGTT+TGG + chr3_4:72128881-72128900 None:intergenic 35.0%
CTTTACAGCCTTAGAAAAAG+TGG + chr3_4:72128946-72128965 None:intergenic 35.0%
!!! CACTTTTTCTAAGGCTGTAA+AGG - chr3_4:72128944-72128963 Msa0519820:CDS 35.0%
! TGAAATTTTAGGCACTCAAG+AGG - chr3_4:72129044-72129063 Msa0519820:CDS 35.0%
TGCAAGGAGAATCAAAGATA+AGG - chr3_4:72129194-72129213 Msa0519820:intron 35.0%
ATGTCTTTACAAGACCTTGT+TGG - chr3_4:72129417-72129436 Msa0519820:CDS 35.0%
AAACTTGTCACCAATGATGA+TGG + chr3_4:72129498-72129517 None:intergenic 35.0%
TTTGATTCCATTGAAGGCTT+TGG + chr3_4:72129573-72129592 None:intergenic 35.0%
AGAACTAACAGCAACATTAG+TGG + chr3_4:72129601-72129620 None:intergenic 35.0%
! CTAATGTTGCTGTTAGTTCT+TGG - chr3_4:72129601-72129620 Msa0519820:CDS 35.0%
ATTTGTGTAGCTACTTGTGA+AGG + chr3_4:72129630-72129649 None:intergenic 35.0%
GACAAATTGATTGAAGATGC+TGG + chr3_4:72129657-72129676 None:intergenic 35.0%
CAAGGAGATATAATCTCTCT+AGG + chr3_4:72129712-72129731 None:intergenic 35.0%
ATGTAACACAAGGGTAACAT+TGG - chr3_4:72129886-72129905 Msa0519820:five_prime_UTR 35.0%
!! CCAAAAGGCTAAGTTTGTTA+AGG + chr3_4:72129912-72129931 None:intergenic 35.0%
!! CCTTAACAAACTTAGCCTTT+TGG - chr3_4:72129909-72129928 Msa0519820:five_prime_UTR 35.0%
!! TTAGCCTTTTGGCTATATGT+TGG - chr3_4:72129920-72129939 Msa0519820:five_prime_UTR 35.0%
CATTCCAACATATAGCCAAA+AGG + chr3_4:72129927-72129946 None:intergenic 35.0%
AAGCTGAAGCAGAAGAATAG+AGG - chr3_4:72126284-72126303 Msa0519820:three_prime_UTR 40.0%
GGAGAAGAAGTAGAAATGTG+GGG + chr3_4:72126543-72126562 None:intergenic 40.0%
GAGGAGAAGAAGTAGAAATG+TGG + chr3_4:72126545-72126564 None:intergenic 40.0%
GTTGAGTTTGTGAAGTGAGA+AGG + chr3_4:72126642-72126661 None:intergenic 40.0%
GTTATGCCTATCAAGTCAGA+TGG - chr3_4:72126717-72126736 Msa0519820:CDS 40.0%
! AGTGATCCATCTGACTTGAT+AGG + chr3_4:72126726-72126745 None:intergenic 40.0%
CTTTGTATCATGGAAGCTCT+TGG - chr3_4:72126744-72126763 Msa0519820:CDS 40.0%
CTTGGTAGATCACAATCACA+AGG - chr3_4:72126762-72126781 Msa0519820:CDS 40.0%
GTAGATCACAATCACAAGGT+TGG - chr3_4:72126766-72126785 Msa0519820:CDS 40.0%
!!! TTTTCTTGGTGGTGCAACAA+TGG - chr3_4:72127004-72127023 Msa0519820:CDS 40.0%
!! TTTCTTGGTGGTGCAACAAT+GGG - chr3_4:72127005-72127024 Msa0519820:CDS 40.0%
ATATGGTAGCCATGAAAGTG+AGG - chr3_4:72127037-72127056 Msa0519820:CDS 40.0%
! GATGAGGATCTGCATTTTGT+TGG + chr3_4:72127100-72127119 None:intergenic 40.0%
! TGGTCTGTATTAGCTTGATG+AGG + chr3_4:72127116-72127135 None:intergenic 40.0%
CATCCATATTATGCAGCACT+TGG - chr3_4:72127179-72127198 Msa0519820:intron 40.0%
TATGCAGCACTTGGTTATCA+TGG - chr3_4:72127188-72127207 Msa0519820:intron 40.0%
CCTCTAATGGTGCTTGAAAT+AGG + chr3_4:72127214-72127233 None:intergenic 40.0%
CCTATTTCAAGCACCATTAG+AGG - chr3_4:72127211-72127230 Msa0519820:intron 40.0%
GGGAACTAGAAACATCAACA+TGG + chr3_4:72127259-72127278 None:intergenic 40.0%
! GAAGCAGAATACCAGTTTTG+AGG + chr3_4:72127287-72127306 None:intergenic 40.0%
CAGATGAACACTACTAGCAT+GGG - chr3_4:72127323-72127342 Msa0519820:intron 40.0%
AGATGAACACTACTAGCATG+GGG - chr3_4:72127324-72127343 Msa0519820:intron 40.0%
TCTTCTGTTGTTGGTACTGT+AGG - chr3_4:72127377-72127396 Msa0519820:intron 40.0%
TGGAACAGAATCAGTGACTA+TGG - chr3_4:72127487-72127506 Msa0519820:intron 40.0%
AACAGAATCAGTGACTATGG+AGG - chr3_4:72127490-72127509 Msa0519820:intron 40.0%
GTCAAAAGCAGCCTATTCAT+AGG - chr3_4:72127540-72127559 Msa0519820:intron 40.0%
CAGAGAACATCTCAGTATAG+AGG - chr3_4:72127584-72127603 Msa0519820:intron 40.0%
ATGGGATAACAGTTGCAAGA+AGG - chr3_4:72127823-72127842 Msa0519820:intron 40.0%
GATAACAGTTGCAAGAAGGA+AGG - chr3_4:72127827-72127846 Msa0519820:intron 40.0%
! CAAGCAGCTCTTAAGTATTG+GGG - chr3_4:72128176-72128195 Msa0519820:intron 40.0%
GGGAAGTTTATGTGTGTTGA+AGG + chr3_4:72128203-72128222 None:intergenic 40.0%
CTAAGGAGATCAAATGTACC+GGG + chr3_4:72128223-72128242 None:intergenic 40.0%
GCTAAGGAGATCAAATGTAC+CGG + chr3_4:72128224-72128243 None:intergenic 40.0%
! GAAAAAGCAGTGGATTCTCA+AGG - chr3_4:72128488-72128507 Msa0519820:intron 40.0%
! AAAAGCAGTGGATTCTCAAG+GGG - chr3_4:72128490-72128509 Msa0519820:intron 40.0%
! TTTTGCAGACATCACCAACA+TGG - chr3_4:72128620-72128639 Msa0519820:CDS 40.0%
GGTAACAAGGACCTTTATCT+TGG - chr3_4:72128674-72128693 Msa0519820:CDS 40.0%
GTAGCAGCAATAAAATTCCG+TGG - chr3_4:72129087-72129106 Msa0519820:CDS 40.0%
TTGTAACAGCATTTGCTCCA+CGG + chr3_4:72129107-72129126 None:intergenic 40.0%
GCTAGCAATACTCTTCTTTC+TGG - chr3_4:72129165-72129184 Msa0519820:intron 40.0%
TATTCATGAACTTCGGTCTG+TGG + chr3_4:72129222-72129241 None:intergenic 40.0%
CTGCAAAACCATCTTCCATT+TGG + chr3_4:72129322-72129341 None:intergenic 40.0%
ACTCTTTCCAAAGCCTTCAA+TGG - chr3_4:72129563-72129582 Msa0519820:CDS 40.0%
CACAAGTAGCTACACAAATG+AGG - chr3_4:72129631-72129650 Msa0519820:CDS 40.0%
CATTCCATGCAGCAAAAACT+GGG + chr3_4:72129686-72129705 None:intergenic 40.0%
TCATTCCATGCAGCAAAAAC+TGG + chr3_4:72129687-72129706 None:intergenic 40.0%
!! AAAGGGTTGGTTGGGAAATT+TGG - chr3_4:72129814-72129833 Msa0519820:five_prime_UTR 40.0%
AAGCTGAAGCAGAAGAATAG+AGG - chr3_4:72126284-72126303 Msa0519820:three_prime_UTR 40.0%
GGAGAAGAAGTAGAAATGTG+GGG + chr3_4:72126543-72126562 None:intergenic 40.0%
GAGGAGAAGAAGTAGAAATG+TGG + chr3_4:72126545-72126564 None:intergenic 40.0%
GTTGAGTTTGTGAAGTGAGA+AGG + chr3_4:72126642-72126661 None:intergenic 40.0%
GTTATGCCTATCAAGTCAGA+TGG - chr3_4:72126717-72126736 Msa0519820:CDS 40.0%
! AGTGATCCATCTGACTTGAT+AGG + chr3_4:72126726-72126745 None:intergenic 40.0%
CTTTGTATCATGGAAGCTCT+TGG - chr3_4:72126744-72126763 Msa0519820:CDS 40.0%
CTTGGTAGATCACAATCACA+AGG - chr3_4:72126762-72126781 Msa0519820:CDS 40.0%
GTAGATCACAATCACAAGGT+TGG - chr3_4:72126766-72126785 Msa0519820:CDS 40.0%
!!! TTTTCTTGGTGGTGCAACAA+TGG - chr3_4:72127004-72127023 Msa0519820:CDS 40.0%
!! TTTCTTGGTGGTGCAACAAT+GGG - chr3_4:72127005-72127024 Msa0519820:CDS 40.0%
ATATGGTAGCCATGAAAGTG+AGG - chr3_4:72127037-72127056 Msa0519820:CDS 40.0%
! GATGAGGATCTGCATTTTGT+TGG + chr3_4:72127100-72127119 None:intergenic 40.0%
! TGGTCTGTATTAGCTTGATG+AGG + chr3_4:72127116-72127135 None:intergenic 40.0%
CATCCATATTATGCAGCACT+TGG - chr3_4:72127179-72127198 Msa0519820:intron 40.0%
TATGCAGCACTTGGTTATCA+TGG - chr3_4:72127188-72127207 Msa0519820:intron 40.0%
CCTCTAATGGTGCTTGAAAT+AGG + chr3_4:72127214-72127233 None:intergenic 40.0%
CCTATTTCAAGCACCATTAG+AGG - chr3_4:72127211-72127230 Msa0519820:intron 40.0%
GGGAACTAGAAACATCAACA+TGG + chr3_4:72127259-72127278 None:intergenic 40.0%
! GAAGCAGAATACCAGTTTTG+AGG + chr3_4:72127287-72127306 None:intergenic 40.0%
CAGATGAACACTACTAGCAT+GGG - chr3_4:72127323-72127342 Msa0519820:intron 40.0%
AGATGAACACTACTAGCATG+GGG - chr3_4:72127324-72127343 Msa0519820:intron 40.0%
TCTTCTGTTGTTGGTACTGT+AGG - chr3_4:72127377-72127396 Msa0519820:intron 40.0%
TGGAACAGAATCAGTGACTA+TGG - chr3_4:72127487-72127506 Msa0519820:intron 40.0%
AACAGAATCAGTGACTATGG+AGG - chr3_4:72127490-72127509 Msa0519820:intron 40.0%
GTCAAAAGCAGCCTATTCAT+AGG - chr3_4:72127540-72127559 Msa0519820:intron 40.0%
CAGAGAACATCTCAGTATAG+AGG - chr3_4:72127584-72127603 Msa0519820:intron 40.0%
ATGGGATAACAGTTGCAAGA+AGG - chr3_4:72127823-72127842 Msa0519820:intron 40.0%
GATAACAGTTGCAAGAAGGA+AGG - chr3_4:72127827-72127846 Msa0519820:intron 40.0%
! CAAGCAGCTCTTAAGTATTG+GGG - chr3_4:72128176-72128195 Msa0519820:intron 40.0%
GGGAAGTTTATGTGTGTTGA+AGG + chr3_4:72128203-72128222 None:intergenic 40.0%
CTAAGGAGATCAAATGTACC+GGG + chr3_4:72128223-72128242 None:intergenic 40.0%
GCTAAGGAGATCAAATGTAC+CGG + chr3_4:72128224-72128243 None:intergenic 40.0%
! GAAAAAGCAGTGGATTCTCA+AGG - chr3_4:72128488-72128507 Msa0519820:intron 40.0%
! AAAAGCAGTGGATTCTCAAG+GGG - chr3_4:72128490-72128509 Msa0519820:intron 40.0%
! TTTTGCAGACATCACCAACA+TGG - chr3_4:72128620-72128639 Msa0519820:CDS 40.0%
GGTAACAAGGACCTTTATCT+TGG - chr3_4:72128674-72128693 Msa0519820:CDS 40.0%
GTAGCAGCAATAAAATTCCG+TGG - chr3_4:72129087-72129106 Msa0519820:CDS 40.0%
TTGTAACAGCATTTGCTCCA+CGG + chr3_4:72129107-72129126 None:intergenic 40.0%
GCTAGCAATACTCTTCTTTC+TGG - chr3_4:72129165-72129184 Msa0519820:intron 40.0%
TATTCATGAACTTCGGTCTG+TGG + chr3_4:72129222-72129241 None:intergenic 40.0%
CTGCAAAACCATCTTCCATT+TGG + chr3_4:72129322-72129341 None:intergenic 40.0%
ACTCTTTCCAAAGCCTTCAA+TGG - chr3_4:72129563-72129582 Msa0519820:CDS 40.0%
CACAAGTAGCTACACAAATG+AGG - chr3_4:72129631-72129650 Msa0519820:CDS 40.0%
CATTCCATGCAGCAAAAACT+GGG + chr3_4:72129686-72129705 None:intergenic 40.0%
TCATTCCATGCAGCAAAAAC+TGG + chr3_4:72129687-72129706 None:intergenic 40.0%
!! AAAGGGTTGGTTGGGAAATT+TGG - chr3_4:72129814-72129833 Msa0519820:five_prime_UTR 40.0%
TAGCCATGAAAGTGAGGCAA+TGG - chr3_4:72127043-72127062 Msa0519820:CDS 45.0%
AAGCCATTGCCTCACTTTCA+TGG + chr3_4:72127049-72127068 None:intergenic 45.0%
CTGAAAGAAGGTCAAGGGAA+TGG + chr3_4:72127136-72127155 None:intergenic 45.0%
GTTCCCAAATGCCTCAAAAC+TGG - chr3_4:72127273-72127292 Msa0519820:intron 45.0%
GCAGATGAACACTACTAGCA+TGG - chr3_4:72127322-72127341 Msa0519820:intron 45.0%
ACTAGCATGGGGAGTCATAA+TGG - chr3_4:72127335-72127354 Msa0519820:intron 45.0%
GGTGGTTCTTCTTCTGTTGT+TGG - chr3_4:72127368-72127387 Msa0519820:intron 45.0%
GTTGTTGGTACTGTAGGAAG+TGG - chr3_4:72127383-72127402 Msa0519820:intron 45.0%
TTAAGCCTTTCAATGAGCCC+TGG - chr3_4:72127419-72127438 Msa0519820:intron 45.0%
CACAGCTAGATTGAGAACCA+GGG + chr3_4:72127439-72127458 None:intergenic 45.0%
ACACAGCTAGATTGAGAACC+AGG + chr3_4:72127440-72127459 None:intergenic 45.0%
!! GTCACTGATTCTGTTCCAGA+AGG + chr3_4:72127485-72127504 None:intergenic 45.0%
AAAAGAGGAGCTGCTAAGCT+TGG - chr3_4:72127518-72127537 Msa0519820:intron 45.0%
!! CTCAGTATAGAGGTGTCACA+AGG - chr3_4:72127594-72127613 Msa0519820:CDS 45.0%
TCCATTAGGCATAGATGGAC+TGG - chr3_4:72127782-72127801 Msa0519820:CDS 45.0%
ACCAGTCCATCTATGCCTAA+TGG + chr3_4:72127786-72127805 None:intergenic 45.0%
TGGAAGAGTTGCTGGTAACA+AGG - chr3_4:72128661-72128680 Msa0519820:CDS 45.0%
! TTCTTTCTGGTCAGCATGCA+AGG - chr3_4:72129178-72129197 Msa0519820:intron 45.0%
AATGTATCGAGCCAGACCAA+TGG - chr3_4:72129255-72129274 Msa0519820:intron 45.0%
!! AGTGAGGGAGCAGTTTTATC+AGG + chr3_4:72129543-72129562 None:intergenic 45.0%
!! GGCTTTGGAAAGAGTAGTGA+GGG + chr3_4:72129558-72129577 None:intergenic 45.0%
!! AGGCTTTGGAAAGAGTAGTG+AGG + chr3_4:72129559-72129578 None:intergenic 45.0%
! ACTTCCCAGTTTTTGCTGCA+TGG - chr3_4:72129679-72129698 Msa0519820:five_prime_UTR 45.0%
TAGCCATGAAAGTGAGGCAA+TGG - chr3_4:72127043-72127062 Msa0519820:CDS 45.0%
AAGCCATTGCCTCACTTTCA+TGG + chr3_4:72127049-72127068 None:intergenic 45.0%
CTGAAAGAAGGTCAAGGGAA+TGG + chr3_4:72127136-72127155 None:intergenic 45.0%
GTTCCCAAATGCCTCAAAAC+TGG - chr3_4:72127273-72127292 Msa0519820:intron 45.0%
GCAGATGAACACTACTAGCA+TGG - chr3_4:72127322-72127341 Msa0519820:intron 45.0%
ACTAGCATGGGGAGTCATAA+TGG - chr3_4:72127335-72127354 Msa0519820:intron 45.0%
GGTGGTTCTTCTTCTGTTGT+TGG - chr3_4:72127368-72127387 Msa0519820:intron 45.0%
GTTGTTGGTACTGTAGGAAG+TGG - chr3_4:72127383-72127402 Msa0519820:intron 45.0%
TTAAGCCTTTCAATGAGCCC+TGG - chr3_4:72127419-72127438 Msa0519820:intron 45.0%
CACAGCTAGATTGAGAACCA+GGG + chr3_4:72127439-72127458 None:intergenic 45.0%
ACACAGCTAGATTGAGAACC+AGG + chr3_4:72127440-72127459 None:intergenic 45.0%
!! GTCACTGATTCTGTTCCAGA+AGG + chr3_4:72127485-72127504 None:intergenic 45.0%
AAAAGAGGAGCTGCTAAGCT+TGG - chr3_4:72127518-72127537 Msa0519820:intron 45.0%
!! CTCAGTATAGAGGTGTCACA+AGG - chr3_4:72127594-72127613 Msa0519820:CDS 45.0%
TCCATTAGGCATAGATGGAC+TGG - chr3_4:72127782-72127801 Msa0519820:CDS 45.0%
ACCAGTCCATCTATGCCTAA+TGG + chr3_4:72127786-72127805 None:intergenic 45.0%
TGGAAGAGTTGCTGGTAACA+AGG - chr3_4:72128661-72128680 Msa0519820:CDS 45.0%
! TTCTTTCTGGTCAGCATGCA+AGG - chr3_4:72129178-72129197 Msa0519820:intron 45.0%
AATGTATCGAGCCAGACCAA+TGG - chr3_4:72129255-72129274 Msa0519820:intron 45.0%
!! AGTGAGGGAGCAGTTTTATC+AGG + chr3_4:72129543-72129562 None:intergenic 45.0%
!! GGCTTTGGAAAGAGTAGTGA+GGG + chr3_4:72129558-72129577 None:intergenic 45.0%
!! AGGCTTTGGAAAGAGTAGTG+AGG + chr3_4:72129559-72129578 None:intergenic 45.0%
! ACTTCCCAGTTTTTGCTGCA+TGG - chr3_4:72129679-72129698 Msa0519820:five_prime_UTR 45.0%
GAAAGAAGCAGGAACCGTGT+TGG + chr3_4:72126610-72126629 None:intergenic 50.0%
AGCATGGGGAGTCATAATGG+TGG - chr3_4:72127338-72127357 Msa0519820:intron 50.0%
! AGTCATAATGGTGGAGCTGG+TGG - chr3_4:72127347-72127366 Msa0519820:intron 50.0%
GAGAACCAGGGCTCATTGAA+AGG + chr3_4:72127427-72127446 None:intergenic 50.0%
CCAGAAGGTGAGATCTGTCT+AGG + chr3_4:72127470-72127489 None:intergenic 50.0%
CCTAGACAGATCTCACCTTC+TGG - chr3_4:72127467-72127486 Msa0519820:CDS 50.0%
! AGGGGTGCATCAATGTACAG+AGG - chr3_4:72128508-72128527 Msa0519820:intron 50.0%
! CAATGTACAGAGGCGTGACA+AGG - chr3_4:72128518-72128537 Msa0519820:CDS 50.0%
GCAGACATCACCAACATGGT+AGG - chr3_4:72128624-72128643 Msa0519820:CDS 50.0%
GACATCACCAACATGGTAGG+TGG - chr3_4:72128627-72128646 Msa0519820:CDS 50.0%
TTGCTTGCCACCTACCATGT+TGG + chr3_4:72128637-72128656 None:intergenic 50.0%
AACATGGTAGGTGGCAAGCA+AGG - chr3_4:72128636-72128655 Msa0519820:CDS 50.0%
GCAAGGATTGGAAGAGTTGC+TGG - chr3_4:72128653-72128672 Msa0519820:CDS 50.0%
!! GGGTTGGTTGGGAAATTTGG+AGG - chr3_4:72129817-72129836 Msa0519820:five_prime_UTR 50.0%
GAAAGAAGCAGGAACCGTGT+TGG + chr3_4:72126610-72126629 None:intergenic 50.0%
AGCATGGGGAGTCATAATGG+TGG - chr3_4:72127338-72127357 Msa0519820:intron 50.0%
! AGTCATAATGGTGGAGCTGG+TGG - chr3_4:72127347-72127366 Msa0519820:intron 50.0%
GAGAACCAGGGCTCATTGAA+AGG + chr3_4:72127427-72127446 None:intergenic 50.0%
CCAGAAGGTGAGATCTGTCT+AGG + chr3_4:72127470-72127489 None:intergenic 50.0%
CCTAGACAGATCTCACCTTC+TGG - chr3_4:72127467-72127486 Msa0519820:CDS 50.0%
! AGGGGTGCATCAATGTACAG+AGG - chr3_4:72128508-72128527 Msa0519820:intron 50.0%
! CAATGTACAGAGGCGTGACA+AGG - chr3_4:72128518-72128537 Msa0519820:CDS 50.0%
GCAGACATCACCAACATGGT+AGG - chr3_4:72128624-72128643 Msa0519820:CDS 50.0%
GACATCACCAACATGGTAGG+TGG - chr3_4:72128627-72128646 Msa0519820:CDS 50.0%
TTGCTTGCCACCTACCATGT+TGG + chr3_4:72128637-72128656 None:intergenic 50.0%
AACATGGTAGGTGGCAAGCA+AGG - chr3_4:72128636-72128655 Msa0519820:CDS 50.0%
GCAAGGATTGGAAGAGTTGC+TGG - chr3_4:72128653-72128672 Msa0519820:CDS 50.0%
!! GGGTTGGTTGGGAAATTTGG+AGG - chr3_4:72129817-72129836 Msa0519820:five_prime_UTR 50.0%
! GGGAGTCATAATGGTGGAGC+TGG - chr3_4:72127344-72127363 Msa0519820:intron 55.0%
! CATAATGGTGGAGCTGGTGG+TGG - chr3_4:72127350-72127369 Msa0519820:intron 55.0%
GGTAGGTGGCAAGCAAGGAT+TGG - chr3_4:72128641-72128660 Msa0519820:CDS 55.0%
CAGCAGCTTCTCCATTGGTC+TGG + chr3_4:72129269-72129288 None:intergenic 55.0%
CGCTTCAGCAGCTTCTCCAT+TGG + chr3_4:72129274-72129293 None:intergenic 55.0%
! GGGAGTCATAATGGTGGAGC+TGG - chr3_4:72127344-72127363 Msa0519820:intron 55.0%
! CATAATGGTGGAGCTGGTGG+TGG - chr3_4:72127350-72127369 Msa0519820:intron 55.0%
GGTAGGTGGCAAGCAAGGAT+TGG - chr3_4:72128641-72128660 Msa0519820:CDS 55.0%
CAGCAGCTTCTCCATTGGTC+TGG + chr3_4:72129269-72129288 None:intergenic 55.0%
CGCTTCAGCAGCTTCTCCAT+TGG + chr3_4:72129274-72129293 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72126164 72129968 72126164 ID=Msa0519820;Name=Msa0519820
chr3_4 mRNA 72126164 72129968 72126164 ID=Msa0519820-mRNA-1;Parent=Msa0519820;Name=Msa0519820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=301|1|1|1|0.85|0.75|8|255|668
chr3_4 exon 72126164 72127077 72126164 ID=Msa0519820-mRNA-1:exon:19863;Parent=Msa0519820-mRNA-1
chr3_4 exon 72127428 72127504 72127428 ID=Msa0519820-mRNA-1:exon:19862;Parent=Msa0519820-mRNA-1
chr3_4 exon 72127593 72127643 72127593 ID=Msa0519820-mRNA-1:exon:19861;Parent=Msa0519820-mRNA-1
chr3_4 exon 72127740 72127813 72127740 ID=Msa0519820-mRNA-1:exon:19860;Parent=Msa0519820-mRNA-1
chr3_4 exon 72127909 72128002 72127909 ID=Msa0519820-mRNA-1:exon:19859;Parent=Msa0519820-mRNA-1
chr3_4 exon 72128256 72128342 72128256 ID=Msa0519820-mRNA-1:exon:19858;Parent=Msa0519820-mRNA-1
chr3_4 exon 72128517 72129162 72128517 ID=Msa0519820-mRNA-1:exon:19857;Parent=Msa0519820-mRNA-1
chr3_4 exon 72129349 72129968 72129349 ID=Msa0519820-mRNA-1:exon:19856;Parent=Msa0519820-mRNA-1
chr3_4 five_prime_UTR 72129668 72129968 72129668 ID=Msa0519820-mRNA-1:five_prime_utr;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72129349 72129667 72129349 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72128517 72129162 72128517 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72128256 72128342 72128256 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72127909 72128002 72127909 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72127740 72127813 72127740 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72127593 72127643 72127593 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72127428 72127504 72127428 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 CDS 72126419 72127077 72126419 ID=Msa0519820-mRNA-1:cds;Parent=Msa0519820-mRNA-1
chr3_4 three_prime_UTR 72126164 72126418 72126164 ID=Msa0519820-mRNA-1:three_prime_utr;Parent=Msa0519820-mRNA-1
Gene Sequence

>Msa0519820

ATGAAGTCCATGAATGACAGTAGTAACTCTGATGACAACAATCATAACAACAATTGGTTAGGTTTCTCTCTCTCACCCCACATTTCTACTTCTTCTCCTCATCATCATCATCATTACCAACAAACTCAAACTTCTTCAGTTTCCAACACGGTTCCTGCTTCTTTCTATTTTTCACCTTCTCACTTCACAAACTCAACAATCTGTTATGGTGTTCCTGAAAATGGTAACAACTTTCATTCACCTAATTTGACTGTTATGCCTATCAAGTCAGATGGATCACTTTGTATCATGGAAGCTCTTGGTAGATCACAATCACAAGTGATGATGCCATCTTCATCTCCTAAACTAGAGGATTTTCTTGGTGGTGCAACAATGGGTAGTGATGAATATGGTAGCCATGAAAGTGAGGCAATGGCTTTAAGCTTAGACAGCATCTACTATAATAACCAACAAAATGCAGATCCTCATCAAGCTAATACAGACCATTCCCTTGACCTTCTTTCAGAATCTTTCAGACAACAAACATCACATCCATATTATGCAGCACTTGGTTATCATGGCCTATTTCAAGCACCATTAGAGGTAGAATCTAAAGAAAACATAAACCATGTTGATGTTTCTAGTTCCCAAATGCCTCAAAACTGGTATTCTGCTTCTCAAGCTTTAGAGCAGCAGATGAACACTACTAGCATGGGGAGTCATAATGGTGGAGCTGGTGGTGGTTCTTCTTCTGTTGTTGGTACTGTAGGAAGTGGCGAGTTACAATCTTTAAGCCTTTCAATGAGCCCTGGTTCTCAATCTAGCTGTGTTACTGTTCCTAGACAGATCTCACCTTCTGGAACAGAATCAGTGACTATGGAGGCTAAAAAAAGAGGAGCTGCTAAGCTTGGTCAAAAGCAGCCTATTCATAGGAAATCTATTGACACTTTTGGACAGAGAACATCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACAAGAAAAGGAAGACAAGGTTATCAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCAAGCAGCTCTTAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTAGAAAACTACCATACTCAACTTGAGGAAATGAAGAATATGACAAGGCAGGAATATGTTGCACATTTGAGAAGAAAAAGCAGTGGATTCTCAAGGGGTGCATCAATGTACAGAGGCGTGACAAGACATCACCAACATGGTAGGTGGCAAGCAAGGATTGGAAGAGTTGCTGGTAACAAGGACCTTTATCTTGGAACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCAGCAATAAAATTCCGTGGAGCAAATGCTGTTACAAATTTTGACATATCTAAATATGATGTTGAAAGGATCATGGCTAGCAATACTCTTCTTTCTGGTCAGCATGCAAGGAGAATCAAAGATAAGGATCCACAGACCGAAGTTCATGAATATAATCATAGTACTAATGTATCGAGCCAGACCAATGGAGAAGCTGCTGAAGCGCAAAACGTTAACGAAAATAATGATTCCAAATGGAAGATGGTTTTGCAGCAACAGCAATCAAATAGTTGTGATAAAAAAATCATTGTGAATTCTGATGGAAGTTACAAGAATTCTGATTTCTCTATGTCTTTACAAGACCTTGTTGGTATTAATTCAGTTGGTTTGGATGATTCTACCAAAATAGGGACACATTTTTCAAATCCATCATCATTGGTGACAAGTTTAAGCAGTTCAAGAGAAGCTAGTCCTGATAAAACTGCTCCCTCACTACTCTTTCCAAAGCCTTCAATGGAATCAAAAATTGCCACTAATGTTGCTGTTAGTTCTTGGTTTCCTTCACAAGTAGCTACACAAATGAGGCCAGCATCTTCAATCAATTTGTCTCACTTCCCAGTTTTTGCTGCATGGAATGAGACCTAG
Protein sequence

>Msa0519820

MKSMNDSSNSDDNNHNNNWLGFSLSPHISTSSPHHHHHYQQTQTSSVSNTVPASFYFSPSHFTNSTICYGVPENGNNFHSPNLTVMPIKSDGSLCIMEALGRSQSQVMMPSSSPKLEDFLGGATMGSDEYGSHESEAMALSLDSIYYNNQQNADPHQANTDHSLDLLSESFRQQTSHPYYAALGYHGLFQAPLEVESKENINHVDVSSSQMPQNWYSASQALEQQMNTTSMGSHNGGAGGGSSSVVGTVGSGELQSLSLSMSPGSQSSCVTVPRQISPSGTESVTMEAKKRGAAKLGQKQPIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGYQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYHTQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISKYDVERIMASNTLLSGQHARRIKDKDPQTEVHEYNHSTNVSSQTNGEAAEAQNVNENNDSKWKMVLQQQQSNSCDKKIIVNSDGSYKNSDFSMSLQDLVGINSVGLDDSTKIGTHFSNPSSLVTSLSSSREASPDKTAPSLLFPKPSMESKIATNVAVSSWFPSQVATQMRPASSINLSHFPVFAAWNET*