AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085120 MtrunA17_Chr7g0263261 95.247 1031 31 3 1 1019 1 1025 0.0 1982
Msa1085120 MtrunA17_Chr7g0263231 78.853 1116 107 6 1 1019 1 1084 0.0 1768
Msa1085120 MtrunA17_Chr4g0003151 48.503 668 313 9 357 1007 10 663 0.0 641
Msa1085120 MtrunA17_Chr2g0333261 47.254 692 328 13 348 1019 22 696 0.0 615
Msa1085120 MtrunA17_Chr2g0308821 37.294 547 319 9 471 1004 124 659 1.82e-118 378
Msa1085120 MtrunA17_Chr8g0359341 31.689 669 414 11 361 1004 57 707 3.88e-113 366
Msa1085120 MtrunA17_Chr8g0354631 28.801 684 434 12 353 1004 41 703 1.01e-89 303
Msa1085120 MtrunA17_Chr4g0052681 28.922 529 367 6 481 1003 33 558 1.64e-75 260
Msa1085120 MtrunA17_Chr8g0383081 30.713 547 348 9 471 1003 21 550 1.79e-75 259
Msa1085120 MtrunA17_Chr5g0402891 28.547 578 368 12 448 1004 26 579 1.07e-73 256
Msa1085120 MtrunA17_Chr8g0383041 29.602 527 362 7 481 1003 34 555 1.52e-73 254
Msa1085120 MtrunA17_Chr8g0383211 28.592 689 397 22 353 1008 14 640 3.09e-64 230
Msa1085120 MtrunA17_Chr8g0383071 33.574 277 181 3 540 814 33 308 1.94e-48 175
Msa1085120 MtrunA17_Chr4g0053391 32.283 254 160 2 752 1003 1 244 8.54e-45 163
Msa1085120 MtrunA17_Chr4g0052601 27.394 449 292 7 340 781 1 422 3.69e-44 166
Msa1085120 MtrunA17_Chr4g0062411 24.474 666 418 22 364 1006 49 652 1.31e-42 166
Msa1085120 MtrunA17_Chr8g0383051 30.714 280 189 5 481 757 46 323 3.13e-37 143
Msa1085120 MtrunA17_Chr5g0408131 36.607 224 126 6 793 1012 15 226 1.05e-34 133
Msa1085120 MtrunA17_Chr4g0052611 34.742 213 121 5 796 1004 6 204 3.87e-29 117
Msa1085120 MtrunA17_Chr1g0192041 28.947 190 132 1 687 876 47 233 6.02e-28 113
Msa1085120 MtrunA17_Chr8g0383061 31.455 213 119 6 802 1003 1 197 1.60e-20 91.7
Msa1085120 MtrunA17_Chr8g0390371 52.941 68 32 0 936 1003 10 77 2.32e-17 78.2
Msa1085120 MtrunA17_Chr3g0108001 42.466 73 42 0 931 1003 1 73 1.64e-16 76.3
Msa1085120 MtrunA17_Chr8g0383181 28.235 255 136 12 367 613 18 233 4.28e-14 74.7
Msa1085120 MtrunA17_Chr8g0383171 26.596 188 116 5 829 1008 63 236 2.93e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085120 AT3G42170.1 61.515 647 216 5 363 1003 55 674 0.0 864
Msa1085120 AT3G42170.2 61.515 647 216 5 363 1003 33 652 0.0 863
Msa1085120 AT1G18560.1 22.006 668 430 22 368 1006 47 652 3.36e-34 141

Find 247 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTGCAATGTGCCGTTTA+AGG 0.121253 7_2:+85574731 None:intergenic
CTGCATTTCTGATTGGAATT+TGG 0.168703 7_2:-85574185 Msa1085120:CDS
TTCTTACTTGGCTGTGTCTC+TGG 0.182741 7_2:+85574889 None:intergenic
AGCATCCTCACCGTATATTT+TGG 0.187667 7_2:+85573457 None:intergenic
TTTGACCGCGCTTGTGAAAA+TGG 0.198352 7_2:-85572949 Msa1085120:CDS
TTCGATGGTCAGTTGCTAAT+TGG 0.222525 7_2:-85574067 Msa1085120:CDS
TGGTTTGGTCATCAATAAAA+AGG 0.227762 7_2:+85573876 None:intergenic
GTTGGGATCCACTGTTAAAT+TGG 0.249980 7_2:+85575353 None:intergenic
TTACATTCTTTCATGAAGTT+TGG 0.253618 7_2:-85573655 Msa1085120:CDS
CACAAGCGCGGTCAAAGATT+CGG 0.268021 7_2:+85572956 None:intergenic
GTTCCAGACTTTGATGTATT+AGG 0.275187 7_2:-85573179 Msa1085120:CDS
CGACAATCGGCCAATTGATT+TGG 0.276256 7_2:-85575895 Msa1085120:CDS
ATCTCCTTGAATAGTATTAA+AGG 0.277779 7_2:+85574438 None:intergenic
CCTGAACCACTTCCTGATTC+TGG 0.290030 7_2:-85575249 Msa1085120:CDS
ATAAAGATGGAAGGATCTTC+TGG 0.303933 7_2:-85573320 Msa1085120:CDS
CAACATGCCCTTCTACATTC+AGG 0.315559 7_2:+85574814 None:intergenic
AGAACTTTGTTGTCAGATAA+TGG 0.316486 7_2:-85573296 Msa1085120:CDS
CTCTGGGGTATGTTCTTCAT+TGG 0.318268 7_2:+85574906 None:intergenic
AGTTTCCAGTCTTGAATAGA+TGG 0.321027 7_2:+85573758 None:intergenic
GAAGGTGCTGCTTAAGATTC+AGG 0.324315 7_2:+85573918 None:intergenic
TTCAGGGCTAACCGTTTCTA+TGG 0.326189 7_2:+85574831 None:intergenic
TTCAGTTTCACCAAAATATA+CGG 0.336519 7_2:-85573467 Msa1085120:CDS
TGAAGTTTGGAAATTACATT+TGG 0.340740 7_2:-85573642 Msa1085120:CDS
TGCAAGTGATTGTGGGGTAT+TGG 0.351945 7_2:+85575174 None:intergenic
GAATCTTAAGCAGCACCTTC+AGG 0.354317 7_2:-85573915 Msa1085120:CDS
CTGAGAGCAGAGTCAGAATC+AGG 0.357778 7_2:+85574223 None:intergenic
AGCATTTACTATTTCATAGC+TGG 0.361317 7_2:+85574942 None:intergenic
GTGAGTCATCATTTGGGAAT+TGG 0.362781 7_2:+85575053 None:intergenic
TCTTACTTGGCTGTGTCTCT+GGG 0.365134 7_2:+85574890 None:intergenic
GAATGTTTGCTGCATCATAA+AGG 0.367171 7_2:+85573705 None:intergenic
GTCTGAATTGGATCAGTATC+TGG 0.369969 7_2:-85573222 Msa1085120:CDS
CCATCAGACAAAGTCTGAAT+TGG 0.370844 7_2:-85573234 Msa1085120:CDS
GATGGGGTTCCTTTGTAATC+AGG 0.372513 7_2:+85573776 None:intergenic
CGGTTAGCCCTGAATGTAGA+AGG 0.372610 7_2:-85574822 Msa1085120:CDS
TGGGAATTGGCTAGCTGATC+AGG 0.374885 7_2:+85575066 None:intergenic
CATTGTTGTGCTCTGCTTCA+CGG 0.375221 7_2:+85575646 None:intergenic
GAACTAACCACACCATTGTT+TGG 0.379336 7_2:+85575768 None:intergenic
TCGTTGCTGAGTGGTGCCTC+AGG 0.380243 7_2:+85575813 None:intergenic
GGTCATAGTGAGTCATCATT+TGG 0.380468 7_2:+85575046 None:intergenic
TTGATATGTTGTATTCCATT+TGG 0.381932 7_2:+85573856 None:intergenic
ACCATACTGCATCCAGTCTT+TGG 0.385506 7_2:+85572983 None:intergenic
TCAGAAGGAACAGTAGAAAC+TGG 0.387424 7_2:+85573089 None:intergenic
AATGTTTGCTGCATCATAAA+GGG 0.389032 7_2:+85573706 None:intergenic
CTGGTACCAGCCACCTTAAA+CGG 0.390950 7_2:-85574744 Msa1085120:CDS
CCAGAATCAGGAAGTGGTTC+AGG 0.391394 7_2:+85575249 None:intergenic
CAATATGTCTCGGGCCATCT+TGG 0.392944 7_2:+85573118 None:intergenic
TCTGCATATGCCGGTGTTAG+TGG 0.394211 7_2:+85573365 None:intergenic
ATTCATCAAAATATTTCATA+AGG 0.399204 7_2:+85574383 None:intergenic
GGGGTATGTTCTTCATTGGT+TGG 0.401037 7_2:+85574910 None:intergenic
GTATATGAAGCATGCTGATT+AGG 0.401841 7_2:+85574676 None:intergenic
TGAACAAATGCAACAAATCC+TGG 0.406770 7_2:+85574490 None:intergenic
CTGATCAGGCGAGAGTGTTT+CGG 0.406889 7_2:+85575080 None:intergenic
TACACATCCCAACAGTCATT+TGG 0.408652 7_2:-85575142 Msa1085120:CDS
TTTCATGCATAGGTTTAGTA+AGG 0.409761 7_2:+85573576 None:intergenic
CACTTGTTTGTGCCAAAGAC+TGG 0.411168 7_2:-85572995 Msa1085120:CDS
AAGTAATGATGTGGTTGAAT+TGG 0.411533 7_2:-85575733 Msa1085120:CDS
TTTGGTGATTGCTGTAGTTA+TGG 0.417358 7_2:-85573519 Msa1085120:CDS
GAGAGATTCTAGTCTGGCTT+TGG 0.418217 7_2:-85573537 Msa1085120:CDS
AAATTGGCTAATTCATTCTC+AGG 0.423893 7_2:+85575369 None:intergenic
AAGGCATTGTCAATAAAATA+CGG 0.425601 7_2:-85573988 Msa1085120:CDS
CGTTCAAGGGGAAGTGGTGC+TGG 0.428010 7_2:-85574649 Msa1085120:CDS
AGGATCAGAAGTGTCTAAAC+AGG 0.429136 7_2:+85573796 None:intergenic
TATCTGTCTGCATTTCTGAT+TGG 0.429274 7_2:-85574192 Msa1085120:CDS
TTGATGGGAGAGTCGATTGT+TGG 0.429521 7_2:+85575335 None:intergenic
GATTATCAAGTATTTCTTGA+TGG 0.431485 7_2:+85575319 None:intergenic
GCAGTTCTATAACGTCGTTT+TGG 0.441463 7_2:+85574610 None:intergenic
TTAGTGGGCGATCCAGAATC+AGG 0.442864 7_2:+85575237 None:intergenic
GCATTTACTATTTCATAGCT+GGG 0.443288 7_2:+85574943 None:intergenic
TGATGGGAGAGTCGATTGTT+GGG 0.444183 7_2:+85575336 None:intergenic
TCTAAACTACGCAGAAGAGC+TGG 0.446568 7_2:+85574700 None:intergenic
TAGCTACTTCACCTTCTTCA+AGG 0.447217 7_2:+85575970 None:intergenic
TATACTCTTGCAAGTGATTG+TGG 0.448299 7_2:+85575166 None:intergenic
GTGACCTTTAATACTATTCA+AGG 0.449805 7_2:-85574442 Msa1085120:CDS
AGACATTACCACCTCACTGC+TGG 0.450481 7_2:+85575566 None:intergenic
CTTCATATACCCCGCGTTCA+AGG 0.452616 7_2:-85574663 Msa1085120:CDS
AGCACTGGCTCAAAAGTTGC+TGG 0.453968 7_2:-85574763 Msa1085120:CDS
CAACCTAATACATCAAAGTC+TGG 0.454049 7_2:+85573176 None:intergenic
TCGTATGGAGATTATCAAAC+TGG 0.454668 7_2:+85575295 None:intergenic
CTTCACATGGTTGAGCATCC+AGG 0.454995 7_2:-85574508 Msa1085120:CDS
AGACTTTGATGCCTATATCA+TGG 0.456599 7_2:-85573267 Msa1085120:CDS
GAGTCTGTCATGCATGAAGC+AGG 0.461736 7_2:-85575492 Msa1085120:CDS
GGTAGAAGTTTCCATGATAT+AGG 0.462285 7_2:+85573256 None:intergenic
ATGTTGTATTCCATTTGGTT+TGG 0.463820 7_2:+85573861 None:intergenic
ATACTCTTGCAAGTGATTGT+GGG 0.471591 7_2:+85575167 None:intergenic
CTCAACCTAGCAACGACAAT+CGG 0.471720 7_2:-85575908 Msa1085120:CDS
ATTATCAAGTATTTCTTGAT+GGG 0.473301 7_2:+85575320 None:intergenic
CACCACTTCCCCTTGAACGC+GGG 0.473616 7_2:+85574653 None:intergenic
GTCATAGTGAGTCATCATTT+GGG 0.474020 7_2:+85575047 None:intergenic
ACAAGCGCGGTCAAAGATTC+GGG 0.475182 7_2:+85572957 None:intergenic
TGCCACAGGTTCAGAGTTAG+TGG 0.475718 7_2:+85575221 None:intergenic
TCAGGAAGTGGTTCAGGTGG+AGG 0.477445 7_2:+85575255 None:intergenic
AGTGTTGCCTCCAAATCAAT+TGG 0.477467 7_2:+85575885 None:intergenic
ACAAGTGCCTCCACTGTCTC+CGG 0.478247 7_2:+85573011 None:intergenic
ACATCAAAGTCTGGAACTCT+AGG 0.485617 7_2:+85573185 None:intergenic
CTGATTGGAATTTGGAAGGT+AGG 0.486782 7_2:-85574177 Msa1085120:CDS
TTTAGTAAGGTCGCTAATGA+AGG 0.489500 7_2:+85573589 None:intergenic
CAGACTTTGATGTATTAGGT+TGG 0.489968 7_2:-85573175 Msa1085120:CDS
CGTTGCTGAGTGGTGCCTCA+GGG 0.492412 7_2:+85575814 None:intergenic
AACATGCCCTTCTACATTCA+GGG 0.492565 7_2:+85574815 None:intergenic
CGGGCCATCTTGGAGAGTGT+GGG 0.494350 7_2:+85573128 None:intergenic
TTGTTCAAAATCTGCAACCT+CGG 0.494820 7_2:-85574474 Msa1085120:CDS
TCGGGCCATCTTGGAGAGTG+TGG 0.496830 7_2:+85573127 None:intergenic
ATGCATGACAGACTCAGTGC+TGG 0.497898 7_2:+85575500 None:intergenic
CAATCGGCCAATTGATTTGG+AGG 0.499034 7_2:-85575892 Msa1085120:CDS
ATGAAAGAATGTAATAGCAG+TGG 0.500974 7_2:+85573664 None:intergenic
GCCAAAGACTGGATGCAGTA+TGG 0.501851 7_2:-85572984 Msa1085120:CDS
TCTTGATCAATAATTATGTA+AGG 0.502466 7_2:+85574580 None:intergenic
ATGCAACATTGCTTAAAGTA+CGG 0.503617 7_2:+85574032 None:intergenic
TTCATATACCCCGCGTTCAA+GGG 0.504831 7_2:-85574662 Msa1085120:CDS
TCAAGGGCAACTTTAGAAAG+TGG 0.506194 7_2:+85574130 None:intergenic
CTTAAACGGCACATTGCAAA+GGG 0.506564 7_2:-85574730 Msa1085120:CDS
GTTTCCAGTCTTGAATAGAT+GGG 0.511222 7_2:+85573759 None:intergenic
GCTGGGCTGTGCTTCAGACA+TGG 0.513422 7_2:+85575584 None:intergenic
TGCAACATTGCTTAAAGTAC+GGG 0.515335 7_2:+85574033 None:intergenic
CAATTCAGACTTTGTCTGAT+GGG 0.517662 7_2:+85573235 None:intergenic
AACATATCAAATGTTGGTTG+CGG 0.520587 7_2:-85573843 Msa1085120:CDS
GTATCGAAGTTCCTTGCGTC+CGG 0.520893 7_2:-85573030 Msa1085120:CDS
GGAACACTTTACCATAGAAA+CGG 0.526637 7_2:-85574842 Msa1085120:CDS
TTATTGATGACCAAACCAAA+TGG 0.526661 7_2:-85573871 Msa1085120:CDS
TGCTGGAAGCAATATAAAGA+TGG 0.526869 7_2:-85573333 Msa1085120:CDS
TGATGGTCCAAATGACTGTT+GGG 0.527887 7_2:+85575135 None:intergenic
CCAATTCAGACTTTGTCTGA+TGG 0.528198 7_2:+85573234 None:intergenic
GTAGGTTATGTATTTATCAC+GGG 0.529010 7_2:-85574310 Msa1085120:CDS
AACTGACCATCGAAGATAAG+TGG 0.529244 7_2:+85574076 None:intergenic
GCGTCATGACTGTCTGCCAC+AGG 0.529255 7_2:+85575207 None:intergenic
ATGATGACTCACTATGACCT+GGG 0.530285 7_2:-85575042 Msa1085120:CDS
TATGTCAAGATTGTTGATGA+TGG 0.530406 7_2:-85573428 Msa1085120:CDS
ACCCCGCGTTCAAGGGGAAG+TGG 0.530632 7_2:-85574655 Msa1085120:CDS
TGTAGGTTATGTATTTATCA+CGG 0.531395 7_2:-85574311 Msa1085120:CDS
ACTTTGATGTATTAGGTTGG+TGG 0.532207 7_2:-85573172 Msa1085120:CDS
TATGCAGAAGAAGGATATGC+TGG 0.532839 7_2:-85573350 Msa1085120:CDS
GACATTACCACCTCACTGCT+GGG 0.534527 7_2:+85575567 None:intergenic
GTAGATATTCAGAAGTCGTA+TGG 0.535855 7_2:+85575280 None:intergenic
TCCTCGTTTCAAGATGAAGC+TGG 0.535948 7_2:-85573495 Msa1085120:CDS
ATAGTGATTGGAAGTTGCAG+AGG 0.537321 7_2:-85574276 Msa1085120:CDS
CTGGAATACACAATATGTCT+CGG 0.537366 7_2:+85573108 None:intergenic
GTACTGGAGAGATTCTAGTC+TGG 0.539158 7_2:-85573543 Msa1085120:CDS
CTCCACTGTCTCCGGACGCA+AGG 0.539572 7_2:+85573019 None:intergenic
GAATACAACATATCAAATGT+TGG 0.540376 7_2:-85573849 Msa1085120:CDS
GAACCCCATCTATTCAAGAC+TGG 0.542220 7_2:-85573763 Msa1085120:CDS
ATTGGCCGATTGTCGTTGCT+AGG 0.543721 7_2:+85575903 None:intergenic
CCGGTGTTAGTGGCAGAGGA+AGG 0.544115 7_2:+85573375 None:intergenic
TGCTCGAGCTGTTACAAATG+AGG 0.547895 7_2:-85573615 Msa1085120:CDS
TGGATGCTCAACCATGTGAA+GGG 0.548561 7_2:+85574510 None:intergenic
TATGCCGGTGTTAGTGGCAG+AGG 0.549555 7_2:+85573371 None:intergenic
AAACGACGTTATAGAACTGC+TGG 0.553739 7_2:-85574607 Msa1085120:CDS
GCAGAGTCAGAATCAGGGTA+TGG 0.555458 7_2:+85574229 None:intergenic
TTTCGGAGTTAGCCAACTGA+TGG 0.556659 7_2:+85575097 None:intergenic
GTTGTCGTCATGAGATTGCT+AGG 0.559521 7_2:-85574555 Msa1085120:CDS
CAACGACGTGGTCGATTCTG+AGG 0.559930 7_2:-85575796 Msa1085120:CDS
TTTGGACCATCATGAGGCAC+TGG 0.560763 7_2:-85575124 Msa1085120:CDS
AATGTGCCGTTTAAGGTGGC+TGG 0.561742 7_2:+85574738 None:intergenic
AGGCATTGTCAATAAAATAC+GGG 0.562489 7_2:-85573987 Msa1085120:CDS
AAGAATCCACTTATCTTCGA+TGG 0.563589 7_2:-85574082 Msa1085120:CDS
GGCGATCCAGAATCAGGAAG+TGG 0.565225 7_2:+85575243 None:intergenic
CTAAACTACGCAGAAGAGCT+GGG 0.566020 7_2:+85574701 None:intergenic
TGAAAGAATGTAATAGCAGT+GGG 0.566230 7_2:+85573665 None:intergenic
TGGAATACACAATATGTCTC+GGG 0.568137 7_2:+85573109 None:intergenic
AGCTACTTCACCTTCTTCAA+GGG 0.568719 7_2:+85575971 None:intergenic
ATGATGGTCCAAATGACTGT+TGG 0.569458 7_2:+85575134 None:intergenic
AATGTCAGACCAACACGTCC+CGG 0.570053 7_2:+85574358 None:intergenic
TTCCTTGCGTCCGGAGACAG+TGG 0.570149 7_2:-85573021 Msa1085120:CDS
CCTTAAACGGCACATTGCAA+AGG 0.570466 7_2:-85574731 Msa1085120:CDS
GGGACGTGTTGGTCTGACAT+TGG 0.572050 7_2:-85574356 Msa1085120:CDS
TACATGACTACATCGTTGTT+AGG 0.574408 7_2:+85575435 None:intergenic
TATCCTTCTTCTGCATATGC+CGG 0.574601 7_2:+85573356 None:intergenic
AGACACAGCCAAGTAAGAAG+AGG 0.574704 7_2:-85574885 Msa1085120:CDS
GGAGTTAGCCAACTGATGGT+TGG 0.576091 7_2:+85575101 None:intergenic
GGTTGGCCAGTGCCTCATGA+TGG 0.577183 7_2:+85575118 None:intergenic
GAAGTGTTTCACTATTCCCC+AGG 0.577656 7_2:+85575025 None:intergenic
ACACCGGCATATGCAGAAGA+AGG 0.577680 7_2:-85573359 Msa1085120:CDS
GAGACTTCTCAATGTTGTGA+TGG 0.579148 7_2:-85574254 Msa1085120:CDS
GGAAGCAATATAAAGATGGA+AGG 0.582675 7_2:-85573329 Msa1085120:CDS
AATGATGACTCACTATGACC+TGG 0.583281 7_2:-85575043 Msa1085120:CDS
CTGGATGCTCAACCATGTGA+AGG 0.584734 7_2:+85574509 None:intergenic
GCACCACTTCCCCTTGAACG+CGG 0.586425 7_2:+85574652 None:intergenic
TACTCTTGCAAGTGATTGTG+GGG 0.586752 7_2:+85575168 None:intergenic
AGGATGGCTACCCTTGAAGA+AGG 0.589103 7_2:-85575981 Msa1085120:CDS
GATGAATTACCGGGACGTGT+TGG 0.589739 7_2:-85574367 Msa1085120:CDS
ACCACTTCCCCTTGAACGCG+GGG 0.590385 7_2:+85574654 None:intergenic
TTTCCAGTCTTGAATAGATG+GGG 0.595690 7_2:+85573760 None:intergenic
ATTTCTGATTGGAATTTGGA+AGG 0.597326 7_2:-85574181 Msa1085120:CDS
GGCAACACTTGACACGCCGA+TGG 0.599069 7_2:-85575871 Msa1085120:CDS
ATGTAGAAGGGCATGTTGCA+AGG 0.599805 7_2:-85574809 Msa1085120:CDS
GGTTGCGGCTTCTGAACTGA+AGG 0.600921 7_2:-85573828 Msa1085120:CDS
GGCACTGGCCAACCATCAGT+TGG 0.601123 7_2:-85575109 Msa1085120:CDS
TTATCAAAGATAGAGTCAGA+AGG 0.601438 7_2:+85573074 None:intergenic
TCATATACCCCGCGTTCAAG+GGG 0.602278 7_2:-85574661 Msa1085120:CDS
GTACCCCACACTCTCCAAGA+TGG 0.606832 7_2:-85573132 Msa1085120:CDS
CGGTGTTAGTGGCAGAGGAA+GGG 0.608414 7_2:+85573376 None:intergenic
AGATCCTCTGCACATACTTG+AGG 0.610260 7_2:-85573730 Msa1085120:CDS
TTGGTCTGACATTGGATATG+TGG 0.610489 7_2:-85574348 Msa1085120:CDS
GTGAAACACTTCACGACAGT+CGG 0.610653 7_2:-85575014 Msa1085120:CDS
ACCACATTGCAATGATGAAG+TGG 0.611959 7_2:-85575607 Msa1085120:CDS
TTCTCAAGCACACTATGAGA+TGG 0.612569 7_2:-85574983 Msa1085120:CDS
TTAGTAAGGTCGCTAATGAA+GGG 0.612882 7_2:+85573590 None:intergenic
CCTTCCTCTGCCACTAACAC+CGG 0.618365 7_2:-85573375 Msa1085120:CDS
GAATCAGGAAGTGGTTCAGG+TGG 0.620517 7_2:+85575252 None:intergenic
CTTACTTGGCTGTGTCTCTG+GGG 0.622580 7_2:+85574891 None:intergenic
TTGCAATGTGCCGTTTAAGG+TGG 0.623373 7_2:+85574734 None:intergenic
TGGACCTCAAGTCAATCTGT+AGG 0.630778 7_2:-85574328 Msa1085120:CDS
GGATGCTCAACCATGTGAAG+GGG 0.631155 7_2:+85574511 None:intergenic
AGCACAGCCCAGCAGTGAGG+TGG 0.632849 7_2:-85575574 Msa1085120:CDS
TGAGAGCAGAGTCAGAATCA+GGG 0.633209 7_2:+85574224 None:intergenic
CATTTACTATTTCATAGCTG+GGG 0.633853 7_2:+85574944 None:intergenic
CTTGCGTCCGGAGACAGTGG+AGG 0.634824 7_2:-85573018 Msa1085120:CDS
GGATTCTTCACAGAGAGTAG+AGG 0.636348 7_2:+85574097 None:intergenic
TGAATTAGCCAATTTAACAG+TGG 0.636617 7_2:-85575361 Msa1085120:CDS
CGGACAATAGTCTCATCAGT+GGG 0.637526 7_2:+85575666 None:intergenic
GCCCACTAACTCTGAACCTG+TGG 0.638843 7_2:-85575223 Msa1085120:CDS
CAGTCATTTGGACCATCATG+AGG 0.639756 7_2:-85575130 Msa1085120:CDS
TCTGCAACCTCGGTTCAACA+TGG 0.640956 7_2:-85574464 Msa1085120:CDS
TGCATGACAGACTCAGTGCT+GGG 0.641522 7_2:+85575501 None:intergenic
AGTCTGTCATGCATGAAGCA+GGG 0.641730 7_2:-85575491 Msa1085120:CDS
GGCACAAATCAGCAATGATG+TGG 0.644274 7_2:-85575409 Msa1085120:CDS
ATGTTTGCTGCATCATAAAG+GGG 0.644876 7_2:+85573707 None:intergenic
TTGTGTCGCAACTTACCTGA+CGG 0.645729 7_2:-85574416 Msa1085120:CDS
GGTTAGCCCTGAATGTAGAA+GGG 0.648139 7_2:-85574821 Msa1085120:CDS
GTTGCTGAGTGGTGCCTCAG+GGG 0.658032 7_2:+85575815 None:intergenic
GCCACAGGTTCAGAGTTAGT+GGG 0.658075 7_2:+85575222 None:intergenic
GGGCCATCTTGGAGAGTGTG+GGG 0.658293 7_2:+85573129 None:intergenic
GATGCTCAACCATGTGAAGG+GGG 0.658296 7_2:+85574512 None:intergenic
AAATGCAGACAGATACAGCA+TGG 0.665432 7_2:+85574200 None:intergenic
ACTTCTGATCCTGATTACAA+AGG 0.667473 7_2:-85573785 Msa1085120:CDS
AAAACAGCACAACAATGAGA+GGG 0.668751 7_2:-85575709 Msa1085120:CDS
GGCATCACCAAACAATGGTG+TGG 0.673321 7_2:-85575775 Msa1085120:CDS
CTCACATCAGAGCAATGAGG+TGG 0.675090 7_2:-85575541 Msa1085120:CDS
GATTTGTTGAGCTCAACACA+AGG 0.678502 7_2:-85574007 Msa1085120:CDS
TCGACCACGTCGTTGCTGAG+TGG 0.678710 7_2:+85575804 None:intergenic
AGCAGAGCACAACAATGAGG+AGG 0.679176 7_2:-85575640 Msa1085120:CDS
GCCACTTCATCATTGCAATG+TGG 0.681169 7_2:+85575606 None:intergenic
TGATGACTCACTATGACCTG+GGG 0.681855 7_2:-85575041 Msa1085120:CDS
ACCAGCTTCATCTTGAAACG+AGG 0.681908 7_2:+85573494 None:intergenic
AAGGTCACCATGTTGAACCG+AGG 0.682871 7_2:+85574457 None:intergenic
TGAAGCAGAGCACAACAATG+AGG 0.683065 7_2:-85575643 Msa1085120:CDS
GGCACCACTCAGCAACGACG+TGG 0.686707 7_2:-85575808 Msa1085120:CDS
TCTGAGGCATCACCAAACAA+TGG 0.686789 7_2:-85575780 Msa1085120:CDS
CAACGATGTAGTCATGTACG+AGG 0.687852 7_2:-85575430 Msa1085120:CDS
GGGGCCTCAAGTATGTGCAG+AGG 0.691005 7_2:+85573726 None:intergenic
ATAACCTACAGATTGACTTG+AGG 0.692419 7_2:+85574324 None:intergenic
ACGGACAATAGTCTCATCAG+TGG 0.700131 7_2:+85575665 None:intergenic
TGACTCACATCAGAGCAATG+AGG 0.706489 7_2:-85575544 Msa1085120:CDS
TTTCACCAAAATATACGGTG+AGG 0.714858 7_2:-85573462 Msa1085120:CDS
AATGCAGACAAGTAATGATG+TGG 0.715499 7_2:-85575742 Msa1085120:CDS
GAAGACTTCAGAATCACATG+AGG 0.716904 7_2:-85573948 Msa1085120:CDS
TGAAGCACAGCCCAGCAGTG+AGG 0.717469 7_2:-85575577 Msa1085120:CDS
TGACAAGAAGTCTACCCCTG+AGG 0.756791 7_2:-85575829 Msa1085120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATCAAAATATTTCATA+AGG + chr7_2:85574539-85574558 None:intergenic 15.0%
!! ATTATCAAGTATTTCTTGAT+GGG + chr7_2:85573602-85573621 None:intergenic 20.0%
!! TCTTGATCAATAATTATGTA+AGG + chr7_2:85574342-85574361 None:intergenic 20.0%
!!! GAAATATTTTGATGAATTAC+CGG - chr7_2:85574542-85574561 Msa1085120:CDS 20.0%
!!! AAATATTTTGATGAATTACC+GGG - chr7_2:85574543-85574562 Msa1085120:CDS 20.0%
!!! TTATCAATTTTTTCATGCAT+AGG + chr7_2:85575356-85575375 None:intergenic 20.0%
!! ATGAAAAAATTGATAAGTAC+TGG - chr7_2:85575360-85575379 Msa1085120:CDS 20.0%
!!! TTAGCTTGTTTTTTACATCA+GGG + chr7_2:85572979-85572998 None:intergenic 25.0%
!!! TTTAGCTTGTTTTTTACATC+AGG + chr7_2:85572980-85572999 None:intergenic 25.0%
! GATGTAAAAAACAAGCTAAA+CGG - chr7_2:85572980-85572999 Msa1085120:CDS 25.0%
! GATTATCAAGTATTTCTTGA+TGG + chr7_2:85573603-85573622 None:intergenic 25.0%
!!! TTTTTTTTCCTCTTCTTACT+TGG + chr7_2:85574045-85574064 None:intergenic 25.0%
! GAAAAAAAAGTCTATAGTCT+GGG - chr7_2:85574056-85574075 Msa1085120:CDS 25.0%
! ATCTCCTTGAATAGTATTAA+AGG + chr7_2:85574484-85574503 None:intergenic 25.0%
! TGTAGGTTATGTATTTATCA+CGG - chr7_2:85574608-85574627 Msa1085120:CDS 25.0%
!!! AAGGCATTGTCAATAAAATA+CGG - chr7_2:85574931-85574950 Msa1085120:CDS 25.0%
! TTGATATGTTGTATTCCATT+TGG + chr7_2:85575066-85575085 None:intergenic 25.0%
! GAATACAACATATCAAATGT+TGG - chr7_2:85575070-85575089 Msa1085120:CDS 25.0%
! TTACATTCTTTCATGAAGTT+TGG - chr7_2:85575264-85575283 Msa1085120:CDS 25.0%
! TGAAGTTTGGAAATTACATT+TGG - chr7_2:85575277-85575296 Msa1085120:CDS 25.0%
! TTCAGTTTCACCAAAATATA+CGG - chr7_2:85575452-85575471 Msa1085120:CDS 25.0%
!!! TAGCTTGTTTTTTACATCAG+GGG + chr7_2:85572978-85572997 None:intergenic 30.0%
AAGTAATGATGTGGTTGAAT+TGG - chr7_2:85573186-85573205 Msa1085120:CDS 30.0%
AAATTGGCTAATTCATTCTC+AGG + chr7_2:85573553-85573572 None:intergenic 30.0%
TGAATTAGCCAATTTAACAG+TGG - chr7_2:85573558-85573577 Msa1085120:CDS 30.0%
CATTTACTATTTCATAGCTG+GGG + chr7_2:85573978-85573997 None:intergenic 30.0%
GCATTTACTATTTCATAGCT+GGG + chr7_2:85573979-85573998 None:intergenic 30.0%
AGCATTTACTATTTCATAGC+TGG + chr7_2:85573980-85573999 None:intergenic 30.0%
GGAAAAAAAAGTCTATAGTC+TGG - chr7_2:85574055-85574074 Msa1085120:CDS 30.0%
GTGACCTTTAATACTATTCA+AGG - chr7_2:85574477-85574496 Msa1085120:CDS 30.0%
GTAGGTTATGTATTTATCAC+GGG - chr7_2:85574609-85574628 Msa1085120:CDS 30.0%
!!! GACATTTTGTTGATAGTGAT+TGG - chr7_2:85574631-85574650 Msa1085120:CDS 30.0%
ATTTCTGATTGGAATTTGGA+AGG - chr7_2:85574738-85574757 Msa1085120:CDS 30.0%
ATGCAACATTGCTTAAAGTA+CGG + chr7_2:85574890-85574909 None:intergenic 30.0%
! AGGCATTGTCAATAAAATAC+GGG - chr7_2:85574932-85574951 Msa1085120:CDS 30.0%
! ATAAAAAGGCTCTTTTCACT+GGG + chr7_2:85575032-85575051 None:intergenic 30.0%
! AATAAAAAGGCTCTTTTCAC+TGG + chr7_2:85575033-85575052 None:intergenic 30.0%
!! TGGTTTGGTCATCAATAAAA+AGG + chr7_2:85575046-85575065 None:intergenic 30.0%
! TTATTGATGACCAAACCAAA+TGG - chr7_2:85575048-85575067 Msa1085120:CDS 30.0%
ATGTTGTATTCCATTTGGTT+TGG + chr7_2:85575061-85575080 None:intergenic 30.0%
! AACATATCAAATGTTGGTTG+CGG - chr7_2:85575076-85575095 Msa1085120:CDS 30.0%
! AATGTTTGCTGCATCATAAA+GGG + chr7_2:85575216-85575235 None:intergenic 30.0%
TGAAAGAATGTAATAGCAGT+GGG + chr7_2:85575257-85575276 None:intergenic 30.0%
ATGAAAGAATGTAATAGCAG+TGG + chr7_2:85575258-85575277 None:intergenic 30.0%
TTTCATGCATAGGTTTAGTA+AGG + chr7_2:85575346-85575365 None:intergenic 30.0%
! TATGTCAAGATTGTTGATGA+TGG - chr7_2:85575491-85575510 Msa1085120:CDS 30.0%
! AGAACTTTGTTGTCAGATAA+TGG - chr7_2:85575623-85575642 Msa1085120:CDS 30.0%
TTATCAAAGATAGAGTCAGA+AGG + chr7_2:85575848-85575867 None:intergenic 30.0%
TGATAAAAAGAGCAAAGAGA+TGG - chr7_2:85575862-85575881 Msa1085120:CDS 30.0%
!!! GTAGCTTTTGAGTTTTCCAT+CGG + chr7_2:85573067-85573086 None:intergenic 35.0%
AATGCAGACAAGTAATGATG+TGG - chr7_2:85573177-85573196 Msa1085120:CDS 35.0%
AAAAACAGCACAACAATGAG+AGG - chr7_2:85573209-85573228 Msa1085120:CDS 35.0%
AAAACAGCACAACAATGAGA+GGG - chr7_2:85573210-85573229 Msa1085120:CDS 35.0%
TACATGACTACATCGTTGTT+AGG + chr7_2:85573487-85573506 None:intergenic 35.0%
TCGTATGGAGATTATCAAAC+TGG + chr7_2:85573627-85573646 None:intergenic 35.0%
GTAGATATTCAGAAGTCGTA+TGG + chr7_2:85573642-85573661 None:intergenic 35.0%
ATACTCTTGCAAGTGATTGT+GGG + chr7_2:85573755-85573774 None:intergenic 35.0%
TATACTCTTGCAAGTGATTG+TGG + chr7_2:85573756-85573775 None:intergenic 35.0%
GTCATAGTGAGTCATCATTT+GGG + chr7_2:85573875-85573894 None:intergenic 35.0%
GGAACACTTTACCATAGAAA+CGG - chr7_2:85574077-85574096 Msa1085120:CDS 35.0%
! GTATATGAAGCATGCTGATT+AGG + chr7_2:85574246-85574265 None:intergenic 35.0%
TGAACAAATGCAACAAATCC+TGG + chr7_2:85574432-85574451 None:intergenic 35.0%
TTGTTCAAAATCTGCAACCT+CGG - chr7_2:85574445-85574464 Msa1085120:CDS 35.0%
!! ATAACCTACAGATTGACTTG+AGG + chr7_2:85574598-85574617 None:intergenic 35.0%
TATCTGTCTGCATTTCTGAT+TGG - chr7_2:85574727-85574746 Msa1085120:CDS 35.0%
CTGCATTTCTGATTGGAATT+TGG - chr7_2:85574734-85574753 Msa1085120:CDS 35.0%
!! TAGAGGTCTGAGATTTTCAA+GGG + chr7_2:85574808-85574827 None:intergenic 35.0%
AAGAATCCACTTATCTTCGA+TGG - chr7_2:85574837-85574856 Msa1085120:CDS 35.0%
TGCAACATTGCTTAAAGTAC+GGG + chr7_2:85574889-85574908 None:intergenic 35.0%
ACTTCTGATCCTGATTACAA+AGG - chr7_2:85575134-85575153 Msa1085120:CDS 35.0%
TTTCCAGTCTTGAATAGATG+GGG + chr7_2:85575162-85575181 None:intergenic 35.0%
GTTTCCAGTCTTGAATAGAT+GGG + chr7_2:85575163-85575182 None:intergenic 35.0%
AGTTTCCAGTCTTGAATAGA+TGG + chr7_2:85575164-85575183 None:intergenic 35.0%
! ATGTTTGCTGCATCATAAAG+GGG + chr7_2:85575215-85575234 None:intergenic 35.0%
! GAATGTTTGCTGCATCATAA+AGG + chr7_2:85575217-85575236 None:intergenic 35.0%
TTAGTAAGGTCGCTAATGAA+GGG + chr7_2:85575332-85575351 None:intergenic 35.0%
TTTAGTAAGGTCGCTAATGA+AGG + chr7_2:85575333-85575352 None:intergenic 35.0%
! TTTGGTGATTGCTGTAGTTA+TGG - chr7_2:85575400-85575419 Msa1085120:CDS 35.0%
TTTCACCAAAATATACGGTG+AGG - chr7_2:85575457-85575476 Msa1085120:CDS 35.0%
TGCTGGAAGCAATATAAAGA+TGG - chr7_2:85575586-85575605 Msa1085120:CDS 35.0%
GGAAGCAATATAAAGATGGA+AGG - chr7_2:85575590-85575609 Msa1085120:CDS 35.0%
ATAAAGATGGAAGGATCTTC+TGG - chr7_2:85575599-85575618 Msa1085120:CDS 35.0%
AGACTTTGATGCCTATATCA+TGG - chr7_2:85575652-85575671 Msa1085120:CDS 35.0%
GGTAGAAGTTTCCATGATAT+AGG + chr7_2:85575666-85575685 None:intergenic 35.0%
CAATTCAGACTTTGTCTGAT+GGG + chr7_2:85575687-85575706 None:intergenic 35.0%
GTTCCAGACTTTGATGTATT+AGG - chr7_2:85575740-85575759 Msa1085120:CDS 35.0%
CAACCTAATACATCAAAGTC+TGG + chr7_2:85575746-85575765 None:intergenic 35.0%
CAGACTTTGATGTATTAGGT+TGG - chr7_2:85575744-85575763 Msa1085120:CDS 35.0%
!! ACTTTGATGTATTAGGTTGG+TGG - chr7_2:85575747-85575766 Msa1085120:CDS 35.0%
TGGAATACACAATATGTCTC+GGG + chr7_2:85575813-85575832 None:intergenic 35.0%
CTGGAATACACAATATGTCT+CGG + chr7_2:85575814-85575833 None:intergenic 35.0%
AGCTACTTCACCTTCTTCAA+GGG + chr7_2:85572951-85572970 None:intergenic 40.0%
TAGCTACTTCACCTTCTTCA+AGG + chr7_2:85572952-85572971 None:intergenic 40.0%
AGTGTTGCCTCCAAATCAAT+TGG + chr7_2:85573037-85573056 None:intergenic 40.0%
GAACTAACCACACCATTGTT+TGG + chr7_2:85573154-85573173 None:intergenic 40.0%
ACCACATTGCAATGATGAAG+TGG - chr7_2:85573312-85573331 Msa1085120:CDS 40.0%
GTTGGGATCCACTGTTAAAT+TGG + chr7_2:85573569-85573588 None:intergenic 40.0%
TACTCTTGCAAGTGATTGTG+GGG + chr7_2:85573754-85573773 None:intergenic 40.0%
TACACATCCCAACAGTCATT+TGG - chr7_2:85573777-85573796 Msa1085120:CDS 40.0%
TGATGGTCCAAATGACTGTT+GGG + chr7_2:85573787-85573806 None:intergenic 40.0%
ATGATGGTCCAAATGACTGT+TGG + chr7_2:85573788-85573807 None:intergenic 40.0%
GTGAGTCATCATTTGGGAAT+TGG + chr7_2:85573869-85573888 None:intergenic 40.0%
GGTCATAGTGAGTCATCATT+TGG + chr7_2:85573876-85573895 None:intergenic 40.0%
AATGATGACTCACTATGACC+TGG - chr7_2:85573876-85573895 Msa1085120:CDS 40.0%
ATGATGACTCACTATGACCT+GGG - chr7_2:85573877-85573896 Msa1085120:CDS 40.0%
TTCTCAAGCACACTATGAGA+TGG - chr7_2:85573936-85573955 Msa1085120:CDS 40.0%
AACATGCCCTTCTACATTCA+GGG + chr7_2:85574107-85574126 None:intergenic 40.0%
CTTAAACGGCACATTGCAAA+GGG - chr7_2:85574189-85574208 Msa1085120:CDS 40.0%
! GCAGTTCTATAACGTCGTTT+TGG + chr7_2:85574312-85574331 None:intergenic 40.0%
AAACGACGTTATAGAACTGC+TGG - chr7_2:85574312-85574331 Msa1085120:CDS 40.0%
TTGGTCTGACATTGGATATG+TGG - chr7_2:85574571-85574590 Msa1085120:CDS 40.0%
ATAGTGATTGGAAGTTGCAG+AGG - chr7_2:85574643-85574662 Msa1085120:CDS 40.0%
GAGACTTCTCAATGTTGTGA+TGG - chr7_2:85574665-85574684 Msa1085120:CDS 40.0%
AAATGCAGACAGATACAGCA+TGG + chr7_2:85574722-85574741 None:intergenic 40.0%
CTGATTGGAATTTGGAAGGT+AGG - chr7_2:85574742-85574761 Msa1085120:CDS 40.0%
! TCAAGGGCAACTTTAGAAAG+TGG + chr7_2:85574792-85574811 None:intergenic 40.0%
!! GTAGAGGTCTGAGATTTTCA+AGG + chr7_2:85574809-85574828 None:intergenic 40.0%
AACTGACCATCGAAGATAAG+TGG + chr7_2:85574846-85574865 None:intergenic 40.0%
TTCGATGGTCAGTTGCTAAT+TGG - chr7_2:85574852-85574871 Msa1085120:CDS 40.0%
!! GATTTGTTGAGCTCAACACA+AGG - chr7_2:85574912-85574931 Msa1085120:CDS 40.0%
GAAGACTTCAGAATCACATG+AGG - chr7_2:85574971-85574990 Msa1085120:CDS 40.0%
!! AGGATCAGAAGTGTCTAAAC+AGG + chr7_2:85575126-85575145 None:intergenic 40.0%
! AGCATCCTCACCGTATATTT+TGG + chr7_2:85575465-85575484 None:intergenic 40.0%
TATCCTTCTTCTGCATATGC+CGG + chr7_2:85575566-85575585 None:intergenic 40.0%
TATGCAGAAGAAGGATATGC+TGG - chr7_2:85575569-85575588 Msa1085120:CDS 40.0%
CCAATTCAGACTTTGTCTGA+TGG + chr7_2:85575688-85575707 None:intergenic 40.0%
CCATCAGACAAAGTCTGAAT+TGG - chr7_2:85575685-85575704 Msa1085120:CDS 40.0%
GTCTGAATTGGATCAGTATC+TGG - chr7_2:85575697-85575716 Msa1085120:CDS 40.0%
! ACATCAAAGTCTGGAACTCT+AGG + chr7_2:85575737-85575756 None:intergenic 40.0%
TCAGAAGGAACAGTAGAAAC+TGG + chr7_2:85575833-85575852 None:intergenic 40.0%
! GAATTCCATTTTCACAAGCG+CGG + chr7_2:85575978-85575997 None:intergenic 40.0%
CTCAACCTAGCAACGACAAT+CGG - chr7_2:85573011-85573030 Msa1085120:CDS 45.0%
CGACAATCGGCCAATTGATT+TGG - chr7_2:85573024-85573043 Msa1085120:CDS 45.0%
!! CAATCGGCCAATTGATTTGG+AGG - chr7_2:85573027-85573046 Msa1085120:CDS 45.0%
! TCTGAGGCATCACCAAACAA+TGG - chr7_2:85573139-85573158 Msa1085120:CDS 45.0%
CGGACAATAGTCTCATCAGT+GGG + chr7_2:85573256-85573275 None:intergenic 45.0%
ACGGACAATAGTCTCATCAG+TGG + chr7_2:85573257-85573276 None:intergenic 45.0%
CATTGTTGTGCTCTGCTTCA+CGG + chr7_2:85573276-85573295 None:intergenic 45.0%
TGAAGCAGAGCACAACAATG+AGG - chr7_2:85573276-85573295 Msa1085120:CDS 45.0%
GCCACTTCATCATTGCAATG+TGG + chr7_2:85573316-85573335 None:intergenic 45.0%
TGACTCACATCAGAGCAATG+AGG - chr7_2:85573375-85573394 Msa1085120:CDS 45.0%
AGTCTGTCATGCATGAAGCA+GGG - chr7_2:85573428-85573447 Msa1085120:CDS 45.0%
CAACGATGTAGTCATGTACG+AGG - chr7_2:85573489-85573508 Msa1085120:CDS 45.0%
GGCACAAATCAGCAATGATG+TGG - chr7_2:85573510-85573529 Msa1085120:CDS 45.0%
TGATGGGAGAGTCGATTGTT+GGG + chr7_2:85573586-85573605 None:intergenic 45.0%
TTGATGGGAGAGTCGATTGT+TGG + chr7_2:85573587-85573606 None:intergenic 45.0%
TGCAAGTGATTGTGGGGTAT+TGG + chr7_2:85573748-85573767 None:intergenic 45.0%
CAGTCATTTGGACCATCATG+AGG - chr7_2:85573789-85573808 Msa1085120:CDS 45.0%
TTTCGGAGTTAGCCAACTGA+TGG + chr7_2:85573825-85573844 None:intergenic 45.0%
TGATGACTCACTATGACCTG+GGG - chr7_2:85573878-85573897 Msa1085120:CDS 45.0%
! GAAGTGTTTCACTATTCCCC+AGG + chr7_2:85573897-85573916 None:intergenic 45.0%
GTGAAACACTTCACGACAGT+CGG - chr7_2:85573905-85573924 Msa1085120:CDS 45.0%
GGGGTATGTTCTTCATTGGT+TGG + chr7_2:85574012-85574031 None:intergenic 45.0%
!! CTCTGGGGTATGTTCTTCAT+TGG + chr7_2:85574016-85574035 None:intergenic 45.0%
TCTTACTTGGCTGTGTCTCT+GGG + chr7_2:85574032-85574051 None:intergenic 45.0%
TTCTTACTTGGCTGTGTCTC+TGG + chr7_2:85574033-85574052 None:intergenic 45.0%
AGACACAGCCAAGTAAGAAG+AGG - chr7_2:85574034-85574053 Msa1085120:CDS 45.0%
TTCAGGGCTAACCGTTTCTA+TGG + chr7_2:85574091-85574110 None:intergenic 45.0%
! GGTTAGCCCTGAATGTAGAA+GGG - chr7_2:85574098-85574117 Msa1085120:CDS 45.0%
CAACATGCCCTTCTACATTC+AGG + chr7_2:85574108-85574127 None:intergenic 45.0%
! ATGTAGAAGGGCATGTTGCA+AGG - chr7_2:85574110-85574129 Msa1085120:CDS 45.0%
! CAAACTTTTGCCTACAGCAC+TGG - chr7_2:85574141-85574160 Msa1085120:CDS 45.0%
! AACTTTTGAGCCAGTGCTGT+AGG + chr7_2:85574154-85574173 None:intergenic 45.0%
!! TTGCAATGTGCCGTTTAAGG+TGG + chr7_2:85574188-85574207 None:intergenic 45.0%
!! CCTTTGCAATGTGCCGTTTA+AGG + chr7_2:85574191-85574210 None:intergenic 45.0%
CCTTAAACGGCACATTGCAA+AGG - chr7_2:85574188-85574207 Msa1085120:CDS 45.0%
CTAAACTACGCAGAAGAGCT+GGG + chr7_2:85574221-85574240 None:intergenic 45.0%
TCTAAACTACGCAGAAGAGC+TGG + chr7_2:85574222-85574241 None:intergenic 45.0%
TTCATATACCCCGCGTTCAA+GGG - chr7_2:85574257-85574276 Msa1085120:CDS 45.0%
GTTGTCGTCATGAGATTGCT+AGG - chr7_2:85574364-85574383 Msa1085120:CDS 45.0%
TGGATGCTCAACCATGTGAA+GGG + chr7_2:85574412-85574431 None:intergenic 45.0%
TTGTGTCGCAACTTACCTGA+CGG - chr7_2:85574503-85574522 Msa1085120:CDS 45.0%
!!! TAAGGCATTGCTTTTCCGTC+AGG + chr7_2:85574521-85574540 None:intergenic 45.0%
TGGACCTCAAGTCAATCTGT+AGG - chr7_2:85574591-85574610 Msa1085120:CDS 45.0%
TGAGAGCAGAGTCAGAATCA+GGG + chr7_2:85574698-85574717 None:intergenic 45.0%
GGATTCTTCACAGAGAGTAG+AGG + chr7_2:85574825-85574844 None:intergenic 45.0%
!! GAAGGTGCTGCTTAAGATTC+AGG + chr7_2:85575004-85575023 None:intergenic 45.0%
GAATCTTAAGCAGCACCTTC+AGG - chr7_2:85575004-85575023 Msa1085120:CDS 45.0%
! TCTTTTCACTGGGAACCTGA+AGG + chr7_2:85575022-85575041 None:intergenic 45.0%
GATGGGGTTCCTTTGTAATC+AGG + chr7_2:85575146-85575165 None:intergenic 45.0%
GAACCCCATCTATTCAAGAC+TGG - chr7_2:85575156-85575175 Msa1085120:CDS 45.0%
AGATCCTCTGCACATACTTG+AGG - chr7_2:85575189-85575208 Msa1085120:CDS 45.0%
TGCTCGAGCTGTTACAAATG+AGG - chr7_2:85575304-85575323 Msa1085120:CDS 45.0%
GTACTGGAGAGATTCTAGTC+TGG - chr7_2:85575376-85575395 Msa1085120:CDS 45.0%
! GAGAGATTCTAGTCTGGCTT+TGG - chr7_2:85575382-85575401 Msa1085120:CDS 45.0%
TCCTCGTTTCAAGATGAAGC+TGG - chr7_2:85575424-85575443 Msa1085120:CDS 45.0%
ACCAGCTTCATCTTGAAACG+AGG + chr7_2:85575428-85575447 None:intergenic 45.0%
CACTTGTTTGTGCCAAAGAC+TGG - chr7_2:85575924-85575943 Msa1085120:CDS 45.0%
ACCATACTGCATCCAGTCTT+TGG + chr7_2:85575939-85575958 None:intergenic 45.0%
TTTGACCGCGCTTGTGAAAA+TGG - chr7_2:85575970-85575989 Msa1085120:CDS 45.0%
ATTGGCCGATTGTCGTTGCT+AGG + chr7_2:85573019-85573038 None:intergenic 50.0%
TGACAAGAAGTCTACCCCTG+AGG - chr7_2:85573090-85573109 Msa1085120:CDS 50.0%
GGCATCACCAAACAATGGTG+TGG - chr7_2:85573144-85573163 Msa1085120:CDS 50.0%
AGCAGAGCACAACAATGAGG+AGG - chr7_2:85573279-85573298 Msa1085120:CDS 50.0%
GACATTACCACCTCACTGCT+GGG + chr7_2:85573355-85573374 None:intergenic 50.0%
AGACATTACCACCTCACTGC+TGG + chr7_2:85573356-85573375 None:intergenic 50.0%
CTCACATCAGAGCAATGAGG+TGG - chr7_2:85573378-85573397 Msa1085120:CDS 50.0%
TGCATGACAGACTCAGTGCT+GGG + chr7_2:85573421-85573440 None:intergenic 50.0%
ATGCATGACAGACTCAGTGC+TGG + chr7_2:85573422-85573441 None:intergenic 50.0%
GAGTCTGTCATGCATGAAGC+AGG - chr7_2:85573427-85573446 Msa1085120:CDS 50.0%
GAATCAGGAAGTGGTTCAGG+TGG + chr7_2:85573670-85573689 None:intergenic 50.0%
CCAGAATCAGGAAGTGGTTC+AGG + chr7_2:85573673-85573692 None:intergenic 50.0%
CCTGAACCACTTCCTGATTC+TGG - chr7_2:85573670-85573689 Msa1085120:CDS 50.0%
! TTAGTGGGCGATCCAGAATC+AGG + chr7_2:85573685-85573704 None:intergenic 50.0%
GCCACAGGTTCAGAGTTAGT+GGG + chr7_2:85573700-85573719 None:intergenic 50.0%
TGCCACAGGTTCAGAGTTAG+TGG + chr7_2:85573701-85573720 None:intergenic 50.0%
TTTGGACCATCATGAGGCAC+TGG - chr7_2:85573795-85573814 Msa1085120:CDS 50.0%
GGAGTTAGCCAACTGATGGT+TGG + chr7_2:85573821-85573840 None:intergenic 50.0%
!! CTGATCAGGCGAGAGTGTTT+CGG + chr7_2:85573842-85573861 None:intergenic 50.0%
! TGGGAATTGGCTAGCTGATC+AGG + chr7_2:85573856-85573875 None:intergenic 50.0%
CTTACTTGGCTGTGTCTCTG+GGG + chr7_2:85574031-85574050 None:intergenic 50.0%
! CGGTTAGCCCTGAATGTAGA+AGG - chr7_2:85574097-85574116 Msa1085120:CDS 50.0%
!! AGCACTGGCTCAAAAGTTGC+TGG - chr7_2:85574156-85574175 Msa1085120:CDS 50.0%
CTGGTACCAGCCACCTTAAA+CGG - chr7_2:85574175-85574194 Msa1085120:CDS 50.0%
!! AATGTGCCGTTTAAGGTGGC+TGG + chr7_2:85574184-85574203 None:intergenic 50.0%
CTTCATATACCCCGCGTTCA+AGG - chr7_2:85574256-85574275 Msa1085120:CDS 50.0%
TCATATACCCCGCGTTCAAG+GGG - chr7_2:85574258-85574277 Msa1085120:CDS 50.0%
GCATGATTACCCCCTTCACA+TGG - chr7_2:85574398-85574417 Msa1085120:CDS 50.0%
GATGCTCAACCATGTGAAGG+GGG + chr7_2:85574410-85574429 None:intergenic 50.0%
GGATGCTCAACCATGTGAAG+GGG + chr7_2:85574411-85574430 None:intergenic 50.0%
CTGGATGCTCAACCATGTGA+AGG + chr7_2:85574413-85574432 None:intergenic 50.0%
CTTCACATGGTTGAGCATCC+AGG - chr7_2:85574411-85574430 Msa1085120:CDS 50.0%
TCTGCAACCTCGGTTCAACA+TGG - chr7_2:85574455-85574474 Msa1085120:CDS 50.0%
AAGGTCACCATGTTGAACCG+AGG + chr7_2:85574465-85574484 None:intergenic 50.0%
GATGAATTACCGGGACGTGT+TGG - chr7_2:85574552-85574571 Msa1085120:CDS 50.0%
AATGTCAGACCAACACGTCC+CGG + chr7_2:85574564-85574583 None:intergenic 50.0%
GCAGAGTCAGAATCAGGGTA+TGG + chr7_2:85574693-85574712 None:intergenic 50.0%
CTGAGAGCAGAGTCAGAATC+AGG + chr7_2:85574699-85574718 None:intergenic 50.0%
! TCTGCATATGCCGGTGTTAG+TGG + chr7_2:85575557-85575576 None:intergenic 50.0%
ACACCGGCATATGCAGAAGA+AGG - chr7_2:85575560-85575579 Msa1085120:CDS 50.0%
CAATATGTCTCGGGCCATCT+TGG + chr7_2:85575804-85575823 None:intergenic 50.0%
GTATCGAAGTTCCTTGCGTC+CGG - chr7_2:85575889-85575908 Msa1085120:CDS 50.0%
GCCAAAGACTGGATGCAGTA+TGG - chr7_2:85575935-85575954 Msa1085120:CDS 50.0%
ACAAGCGCGGTCAAAGATTC+GGG + chr7_2:85575965-85575984 None:intergenic 50.0%
CACAAGCGCGGTCAAAGATT+CGG + chr7_2:85575966-85575985 None:intergenic 50.0%
! CAACGACGTGGTCGATTCTG+AGG - chr7_2:85573123-85573142 Msa1085120:CDS 55.0%
TCAGGAAGTGGTTCAGGTGG+AGG + chr7_2:85573667-85573686 None:intergenic 55.0%
GGCGATCCAGAATCAGGAAG+TGG + chr7_2:85573679-85573698 None:intergenic 55.0%
GCCCACTAACTCTGAACCTG+TGG - chr7_2:85573696-85573715 Msa1085120:CDS 55.0%
! GGGACGTGTTGGTCTGACAT+TGG - chr7_2:85574563-85574582 Msa1085120:CDS 55.0%
GGTTGCGGCTTCTGAACTGA+AGG - chr7_2:85575091-85575110 Msa1085120:CDS 55.0%
! CGGTGTTAGTGGCAGAGGAA+GGG + chr7_2:85575546-85575565 None:intergenic 55.0%
CCTTCCTCTGCCACTAACAC+CGG - chr7_2:85575544-85575563 Msa1085120:CDS 55.0%
! TATGCCGGTGTTAGTGGCAG+AGG + chr7_2:85575551-85575570 None:intergenic 55.0%
GTACCCCACACTCTCCAAGA+TGG - chr7_2:85575787-85575806 Msa1085120:CDS 55.0%
ACAAGTGCCTCCACTGTCTC+CGG + chr7_2:85575911-85575930 None:intergenic 55.0%
GGCAACACTTGACACGCCGA+TGG - chr7_2:85573048-85573067 Msa1085120:CDS 60.0%
GTTGCTGAGTGGTGCCTCAG+GGG + chr7_2:85573107-85573126 None:intergenic 60.0%
CGTTGCTGAGTGGTGCCTCA+GGG + chr7_2:85573108-85573127 None:intergenic 60.0%
TCGTTGCTGAGTGGTGCCTC+AGG + chr7_2:85573109-85573128 None:intergenic 60.0%
TCGACCACGTCGTTGCTGAG+TGG + chr7_2:85573118-85573137 None:intergenic 60.0%
GCTGGGCTGTGCTTCAGACA+TGG + chr7_2:85573338-85573357 None:intergenic 60.0%
TGAAGCACAGCCCAGCAGTG+AGG - chr7_2:85573342-85573361 Msa1085120:CDS 60.0%
GCGTCATGACTGTCTGCCAC+AGG + chr7_2:85573715-85573734 None:intergenic 60.0%
! GGTTGGCCAGTGCCTCATGA+TGG + chr7_2:85573804-85573823 None:intergenic 60.0%
!! GGCACTGGCCAACCATCAGT+TGG - chr7_2:85573810-85573829 Msa1085120:CDS 60.0%
ACCACTTCCCCTTGAACGCG+GGG + chr7_2:85574268-85574287 None:intergenic 60.0%
CACCACTTCCCCTTGAACGC+GGG + chr7_2:85574269-85574288 None:intergenic 60.0%
GCACCACTTCCCCTTGAACG+CGG + chr7_2:85574270-85574289 None:intergenic 60.0%
CGTTCAAGGGGAAGTGGTGC+TGG - chr7_2:85574270-85574289 Msa1085120:CDS 60.0%
GGGGCCTCAAGTATGTGCAG+AGG + chr7_2:85575196-85575215 None:intergenic 60.0%
! CCGGTGTTAGTGGCAGAGGA+AGG + chr7_2:85575547-85575566 None:intergenic 60.0%
! GGGCCATCTTGGAGAGTGTG+GGG + chr7_2:85575793-85575812 None:intergenic 60.0%
! CGGGCCATCTTGGAGAGTGT+GGG + chr7_2:85575794-85575813 None:intergenic 60.0%
TCGGGCCATCTTGGAGAGTG+TGG + chr7_2:85575795-85575814 None:intergenic 60.0%
TTCCTTGCGTCCGGAGACAG+TGG - chr7_2:85575898-85575917 Msa1085120:CDS 60.0%
GGCACCACTCAGCAACGACG+TGG - chr7_2:85573111-85573130 Msa1085120:CDS 65.0%
AGCACAGCCCAGCAGTGAGG+TGG - chr7_2:85573345-85573364 Msa1085120:CDS 65.0%
ACCCCGCGTTCAAGGGGAAG+TGG - chr7_2:85574264-85574283 Msa1085120:CDS 65.0%
CTCCACTGTCTCCGGACGCA+AGG + chr7_2:85575903-85575922 None:intergenic 65.0%
CTTGCGTCCGGAGACAGTGG+AGG - chr7_2:85575901-85575920 Msa1085120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85572941 85576000 85572941 ID=Msa1085120;Name=Msa1085120
chr7_2 mRNA 85572941 85576000 85572941 ID=Msa1085120-mRNA-1;Parent=Msa1085120;Name=Msa1085120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|1019
chr7_2 exon 85572941 85576000 85572941 ID=Msa1085120-mRNA-1:exon:23128;Parent=Msa1085120-mRNA-1
chr7_2 CDS 85572941 85576000 85572941 ID=Msa1085120-mRNA-1:cds;Parent=Msa1085120-mRNA-1
Gene Sequence

>Msa1085120

ATGGCTACCCTTGAAGAAGGTGAAGTAGCTATGTCCCCTGATGTAAAAAACAAGCTAAACGGCACTTACTCTCAACCTAGCAACGACAATCGGCCAATTGATTTGGAGGCAACACTTGACACGCCGATGGAAAACTCAAAAGCTACTCTTGACAAGAAGTCTACCCCTGAGGCACCACTCAGCAACGACGTGGTCGATTCTGAGGCATCACCAAACAATGGTGTGGTTAGTTCTGAAATGCAGACAAGTAATGATGTGGTTGAATTGGAAAAACAGCACAACAATGAGAGGGTGCTTGCATCTGAAACACAGCCCACTGATGAGACTATTGTCCGTGAAGCAGAGCACAACAATGAGGAGGTTGTATCTGAACCACATTGCAATGATGAAGTGGCCATGTCTGAAGCACAGCCCAGCAGTGAGGTGGTAATGTCTGACTCACATCAGAGCAATGAGGTGGTCTTTTCTGACACACAACCCAGCACTGAGTCTGTCATGCATGAAGCAGGGATCAGCAATGATGCAGTTGTGTCTGACACACAGCCTAACAACGATGTAGTCATGTACGAGGCACAAATCAGCAATGATGTGGTTGCATCTGAAGCTCAGCCTGAGAATGAATTAGCCAATTTAACAGTGGATCCCAACAATCGACTCTCCCATCAAGAAATACTTGATAATCACCAGTTTGATAATCTCCATACGACTTCTGAATATCTACTTCCTCCACCTGAACCACTTCCTGATTCTGGATCGCCCACTAACTCTGAACCTGTGGCAGACAGTCATGACGCAGATGACAAACCAATACCCCACAATCACTTGCAAGAGTATAATACACATCCCAACAGTCATTTGGACCATCATGAGGCACTGGCCAACCATCAGTTGGCTAACTCCGAAACACTCTCGCCTGATCAGCTAGCCAATTCCCAAATGATGACTCACTATGACCTGGGGAATAGTGAAACACTTCACGACAGTCGGCTGCTAAGTTCTCAAGCACACTATGAGATGGTCAATGCTAACAATTTCCCCAGCTATGAAATAGTAAATGCTGAAACTTTGCCAACCAATGAAGAACATACCCCAGAGACACAGCCAAGTAAGAAGAGGAAAAAAAAGTCTATAGTCTGGGAACACTTTACCATAGAAACGGTTAGCCCTGAATGTAGAAGGGCATGTTGCAAGGAATGCAAACAAACTTTTGCCTACAGCACTGGCTCAAAAGTTGCTGGTACCAGCCACCTTAAACGGCACATTGCAAAGGGAGCATGCCCAGCTCTTCTGCGTAGTTTAGATCCTAATCAGCATGCTTCATATACCCCGCGTTCAAGGGGAAGTGGTGCTGGCAATGCTAGCAATACACCAAAACGACGTTATAGAACTGCTGGCACACCTTACATAATTATTGATCAAGATCGTTGTCGTCATGAGATTGCTAGGATGATCATTATGCATGATTACCCCCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTTCAAAATCTGCAACCTCGGTTCAACATGGTGACCTTTAATACTATTCAAGGAGATTGTGTCGCAACTTACCTGACGGAAAAGCAATGCCTTATGAAATATTTTGATGAATTACCGGGACGTGTTGGTCTGACATTGGATATGTGGACCTCAAGTCAATCTGTAGGTTATGTATTTATCACGGGACATTTTGTTGATAGTGATTGGAAGTTGCAGAGGAGACTTCTCAATGTTGTGATGGAACCATACCCTGATTCTGACTCTGCTCTCAGCCATGCTGTATCTGTCTGCATTTCTGATTGGAATTTGGAAGGTAGGCTGTTCACAATTACTTGTAATCATCCACTTTCTAAAGTTGCCCTTGAAAATCTCAGACCTCTACTCTCTGTGAAGAATCCACTTATCTTCGATGGTCAGTTGCTAATTGGACATTGCATTGCCCGTACTTTAAGCAATGTTGCATATGATTTGTTGAGCTCAACACAAGGCATTGTCAATAAAATACGGGAAAGTGTAAAATATGTGAAGACTTCAGAATCACATGAGGATAAATTCCTGAATCTTAAGCAGCACCTTCAGGTTCCCAGTGAAAAGAGCCTTTTTATTGATGACCAAACCAAATGGAATACAACATATCAAATGTTGGTTGCGGCTTCTGAACTGAAGGAAGTGTTTTCCTGTTTAGACACTTCTGATCCTGATTACAAAGGAACCCCATCTATTCAAGACTGGAAACTTGTTGAGATCCTCTGCACATACTTGAGGCCCCTTTATGATGCAGCAAACATTCTTATGACAACAACTTATCCCACTGCTATTACATTCTTTCATGAAGTTTGGAAATTACATTTGGATCTTGCTCGAGCTGTTACAAATGAGGATCCCTTCATTAGCGACCTTACTAAACCTATGCATGAAAAAATTGATAAGTACTGGAGAGATTCTAGTCTGGCTTTGGTGATTGCTGTAGTTATGGATCCTCGTTTCAAGATGAAGCTGGTTGAGTTCAGTTTCACCAAAATATACGGTGAGGATGCTCATGTGTATGTCAAGATTGTTGATGATGGAATTCATGAGCTGTTTCATGAGTATGCAACCCTTCCTCTGCCACTAACACCGGCATATGCAGAAGAAGGATATGCTGGAAGCAATATAAAGATGGAAGGATCTTCTGGAAGAACTTTGTTGTCAGATAATGGTCTTACAGACTTTGATGCCTATATCATGGAAACTTCTACCCATCAGACAAAGTCTGAATTGGATCAGTATCTGGAAGAATCTCTGTTGCCTAGAGTTCCAGACTTTGATGTATTAGGTTGGTGGAAGCTAAACAAACTCAAGTACCCCACACTCTCCAAGATGGCCCGAGACATATTGTGTATTCCAGTTTCTACTGTTCCTTCTGACTCTATCTTTGATAAAAAGAGCAAAGAGATGGATCAGTATCGAAGTTCCTTGCGTCCGGAGACAGTGGAGGCACTTGTTTGTGCCAAAGACTGGATGCAGTATGGTGCACCCGAATCTTTGACCGCGCTTGTGAAAATGGAATTCTAG
Protein sequence

>Msa1085120

MATLEEGEVAMSPDVKNKLNGTYSQPSNDNRPIDLEATLDTPMENSKATLDKKSTPEAPLSNDVVDSEASPNNGVVSSEMQTSNDVVELEKQHNNERVLASETQPTDETIVREAEHNNEEVVSEPHCNDEVAMSEAQPSSEVVMSDSHQSNEVVFSDTQPSTESVMHEAGISNDAVVSDTQPNNDVVMYEAQISNDVVASEAQPENELANLTVDPNNRLSHQEILDNHQFDNLHTTSEYLLPPPEPLPDSGSPTNSEPVADSHDADDKPIPHNHLQEYNTHPNSHLDHHEALANHQLANSETLSPDQLANSQMMTHYDLGNSETLHDSRLLSSQAHYEMVNANNFPSYEIVNAETLPTNEEHTPETQPSKKRKKKSIVWEHFTIETVSPECRRACCKECKQTFAYSTGSKVAGTSHLKRHIAKGACPALLRSLDPNQHASYTPRSRGSGAGNASNTPKRRYRTAGTPYIIIDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFVQNLQPRFNMVTFNTIQGDCVATYLTEKQCLMKYFDELPGRVGLTLDMWTSSQSVGYVFITGHFVDSDWKLQRRLLNVVMEPYPDSDSALSHAVSVCISDWNLEGRLFTITCNHPLSKVALENLRPLLSVKNPLIFDGQLLIGHCIARTLSNVAYDLLSSTQGIVNKIRESVKYVKTSESHEDKFLNLKQHLQVPSEKSLFIDDQTKWNTTYQMLVAASELKEVFSCLDTSDPDYKGTPSIQDWKLVEILCTYLRPLYDAANILMTTTYPTAITFFHEVWKLHLDLARAVTNEDPFISDLTKPMHEKIDKYWRDSSLALVIAVVMDPRFKMKLVEFSFTKIYGEDAHVYVKIVDDGIHELFHEYATLPLPLTPAYAEEGYAGSNIKMEGSSGRTLLSDNGLTDFDAYIMETSTHQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILCIPVSTVPSDSIFDKKSKEMDQYRSSLRPETVEALVCAKDWMQYGAPESLTALVKMEF*