AlfalfaGEDB | Msa0416890

M. sativa cultivar zhongmu-4 / Msa0416890

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF14372.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416890	RHN48386.1	96.956	1084	31	2	106	1187	1	1084	0.0	2191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416890	sp\|Q9M2N5\|DSLE_ARATH	60.805	671	220	6	517	1171	31	674	0.0	874

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416890	A0A396H522	96.956	1084	31	2	106	1187	1	1084	0.0	2191

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003470	Msa0416890	-0.836379	9.686212e-57	-8.615850e-47
Msa0008850	Msa0416890	-0.805904	1.065698e-49	-8.615850e-47
Msa0013050	Msa0416890	0.834345	3.162941e-56	-8.615850e-47
Msa0023830	Msa0416890	0.842608	2.330477e-58	-8.615850e-47
Msa0030380	Msa0416890	-0.804999	1.649643e-49	-8.615850e-47
Msa0032840	Msa0416890	0.805000	1.649107e-49	-8.615850e-47
Msa0034560	Msa0416890	0.819627	1.051697e-52	-8.615850e-47
Msa0043940	Msa0416890	-0.818413	1.986188e-52	-8.615850e-47
Msa0044240	Msa0416890	0.856868	2.404911e-62	-8.615850e-47
Msa0044710	Msa0416890	-0.814216	1.724552e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416890	MtrunA17_Chr7g0263231	96.956	1084	31	2	106	1187	1	1084	0.0	2191
Msa0416890	MtrunA17_Chr7g0263261	78.763	1116	112	10	106	1187	1	1025	0.0	1730
Msa0416890	MtrunA17_Chr4g0003151	49.623	663	309	9	526	1175	13	663	0.0	651
Msa0416890	MtrunA17_Chr2g0333261	47.688	692	325	14	516	1187	22	696	0.0	624
Msa0416890	MtrunA17_Chr2g0308821	38.026	547	315	9	639	1172	124	659	9.52e-124	396
Msa0416890	MtrunA17_Chr8g0359341	31.649	673	421	10	523	1172	51	707	2.46e-115	375
Msa0416890	MtrunA17_Chr8g0354631	28.843	683	435	11	521	1172	41	703	1.17e-90	309
Msa0416890	MtrunA17_Chr4g0052681	29.490	529	364	6	649	1171	33	558	2.81e-76	264
Msa0416890	MtrunA17_Chr8g0383081	30.241	539	349	10	643	1171	29	550	5.09e-76	263
Msa0416890	MtrunA17_Chr5g0402891	30.165	547	353	11	644	1172	44	579	3.21e-74	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0416890	AT3G42170.1	60.805	671	220	6	517	1171	31	674	0.0	874
Msa0416890	AT3G42170.2	60.656	671	221	6	517	1171	9	652	0.0	872
Msa0416890	AT1G18560.1	21.157	657	450	19	536	1174	46	652	1.92e-32	135

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Find 307 sgRNAs with CRISPR-Local

Find 670 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGCACAACAATGAG+AGG	0.594608	3_2:+63955283	Msa0416890:CDS
AAACGCGGAACGGCGGTGCC+GGG	0.506242	3_2:-63948548	None:intergenic
AAAGATAGAGTCAGAAGGAA+CGG	0.567707	3_2:-63957857	None:intergenic
AAAGGTCACCATGTTGAACT+GGG	0.524503	3_2:-63956480	None:intergenic
AAATCAGCACAACAATGAGA+GGG	0.653205	3_2:+63955284	Msa0416890:CDS
AAATTTACGCTGATTCCTGA+TGG	0.521810	3_2:-63958246	None:intergenic
AACACTTCACAACAATCAGC+TGG	0.557702	3_2:+63955926	Msa0416890:CDS
AACCAAGTCGGCGATCAACT+TGG	0.512138	3_2:+63955024	Msa0416890:CDS
AACTGACCATTGAAGATAAG+TGG	0.504675	3_2:-63956860	None:intergenic
AAGAATCCACTTATCTTCAA+TGG	0.469596	3_2:+63956854	Msa0416890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGTTCAATTAGATCTTATC+GGG	+	chr3_2:63948417-63948436	Msa0416890:CDS	30.0%
TGTTTACGATATAGTTGTAC+AGG	+	chr3_2:63948989-63949008	Msa0416890:intron	30.0%
GATTAGAATGTAGTGTGTTT+AGG	+	chr3_2:63949017-63949036	Msa0416890:intron	30.0%
ATTAGTAATTTGGTATAGGC+TGG	+	chr3_2:63949720-63949739	Msa0416890:intron	30.0%
TTAGTAATTTGGTATAGGCT+GGG	+	chr3_2:63949721-63949740	Msa0416890:intron	30.0%
GGATATAGTCAGTGATTAAA+TGG	+	chr3_2:63949742-63949761	Msa0416890:intron	30.0%
CAATAGATAATTAACCTGTC+CGG	+	chr3_2:63949857-63949876	Msa0416890:intron	30.0%
GCAAGAATTAACACATGTAT+GGG	-	chr3_2:63950093-63950112	None:intergenic	30.0%
AGCAAGAATTAACACATGTA+TGG	-	chr3_2:63950094-63950113	None:intergenic	30.0%
AGAAGAAAGAATGAGCTTAT+CGG	-	chr3_2:63950431-63950450	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	63948400	63958445	63948400	ID=Msa0416890;Name=Msa0416890
chr3_2	mRNA	63948400	63958445	63948400	ID=Msa0416890-mRNA-1;Parent=Msa0416890;Name=Msa0416890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|1\|1\|0.5\|0.66\|3\|428\|1187
chr3_2	exon	63948400	63948600	63948400	ID=Msa0416890-mRNA-1:exon:13976;Parent=Msa0416890-mRNA-1
chr3_2	exon	63953832	63953926	63953832	ID=Msa0416890-mRNA-1:exon:13977;Parent=Msa0416890-mRNA-1
chr3_2	exon	63954750	63958445	63954750	ID=Msa0416890-mRNA-1:exon:13978;Parent=Msa0416890-mRNA-1
chr3_2	CDS	63948400	63948600	63948400	ID=Msa0416890-mRNA-1:cds;Parent=Msa0416890-mRNA-1
chr3_2	CDS	63953832	63953926	63953832	ID=Msa0416890-mRNA-1:cds;Parent=Msa0416890-mRNA-1
chr3_2	CDS	63954750	63958017	63954750	ID=Msa0416890-mRNA-1:cds;Parent=Msa0416890-mRNA-1
chr3_2	three_prime_UTR	63958018	63958445	63958018	ID=Msa0416890-mRNA-1:three_prime_utr;Parent=Msa0416890-mRNA-1

Gene Sequence

>Msa0416890

GCCGCGTCTCTCAAATTTGGTTCAATTAGATCTTATCGGGTTTTCGTTTCAAAGCCCAATCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTGAAAAGCCCAAGATCTCGCTTCCGCCACTTCCGCAGCTCGGTTCCGAGCTTCCGCTCCCGGCACCGCCGTTCCGCGTTTCCAGATTCAGATTCAGTTGACTTATATCTGGCATATGGCAGTAGAAGAAGGTTAACTTCTGTGCTTTCCAAGGTTTTCCACAGCTTGATATTGCCCTTATTTCCAAGTTCTACAAAGCTAAAAAGGAGAGGATATACTGACAGGATGGCTACCCTTGAAGAAGGTGAAGTAGCTATGTCCCCTGATGTAAAAGATGAGACGATCAATGTCGACAAGATGGATGTCTTTGAAGAAGACAAATTAGCGGTGACCCATGATGTAAAACAAGAGCTAAATGGTACTGACTCTCAACCTTGCAATGATCTTGTAACCCAGGCTACTGGTGGTGATGCAAATGTGTTGGACAATGCCAAAGAATGTCAGAAAAATGAGCCAGAGATTTCTGAATCACTACCCAAAAACCAAGTCGGCGATCAACTTGGTGATTCAAAAGCCACTCTTGACAAGTCTACCACTGAGGCACCACCCAGCATCCATGTGGTCGATTCTGAGGCATCGCCAAACAAAGGTGTGGTTTGTTCTGAAATGCAGACAAGTAATGATGTGGCTGTATCTGAAACACAGCACAGCAATGAGGATGCGGTACCTGAAGCACAGCACAACAATGAAGGGGTAGCTTTATCTGAAGCACAACACATAAATGAGGAGGTTGCATCGGAAAATCAGCACAACAATGAGAGGGTGCTTGCATCTGAAACACAGCCCACTGATGAGACTATTATCTGTGAAGCACATCACAACAATGAGGAGGTTGTATCTGAACCACATTGTGATGATGAGGTGGTCATGTCTGAAGCACAGCCCATCAGTGAGGTGGTAATGTCTGACTCACAGCAGAACAATGTGGTCTTATCTGATTCGCAGCCGAGCAGTGAGGTAGTTTTTTCTGACACACAACCCAATAATGAGACTGTCATGTACGAGGCACAAATCAGTAATGAGACCGTATTGCATGAGGCGCTAATTAGCGATGAAGCTGTCATGCACGAGGCAGAAATCTGCAATGATGGGGTTGCATCTGAAGCTCGGCCTGAGAATGAGTTAGCCAATTCTACAATGGATCCCAACAATCAGCTATCCCATCAAGAAATTCTTGATAATCATCAGTTCGCAGACAGTCATAACACAGATGACAGACCAATACCCCACAATCACTTGCAAGAGTATGATACGCATCCGAACAGTCATCTGGACAATCATGAGGCACTGGACAACCATCAGTTGCCTAACTCTGAAACACTCTCGCCTGATCAGCTAGCCAATTCCCAAATGATGTCTCATTATGACCTGGCAAATAATGAAACACTTCACAACAATCAGCTGGTAAGTTCTCAAGCACACTATGAGATAGTCAATGCTAACAATTTTCCCAGCTATGAAATAGTAAATGCTGAAACTCAGCCAAACAATGAAGAGCATACCCCAGAGACACAGCCAAGTAAGAGGAGGAAAAAAAAGTCTATAGTCTGGGAACACTTTACCATAGAAACAGTTAGCGCTGGATGTAGAAGGGCATGTTGCAAGGAATGCAAACAAACTTTTGCCTACAGTACTGGTTCAAAAGTTGCTGGTACCAGCCACCTTAAACGGCACATTGCCAAGGGGGCCTGCCCAGCTCTTCTGCGTAGTTTGGATCCAAATCAGCATGCCCCATATACCCCACGTTCAAGGGGAAGTGGTGCTAGTAATGCTAGCAATACACCAAAACGACGATACAGAACCGCCAGCACACCTTACATAATTTTTGATCAAGATCGTTGTCGTCATGAGATTGCTAGGATGATCATTATGCATGATTACCCCCTTCACATGGTTGAGCATCCAGGATTTGTTGCATTTGTCCGAAATCTGCAACCCCAGTTCAACATGGTGACCTTTAATACTATTCAAGGAGACTGTGTCGCAACTTACTTGACGGAAAAGCAAAACCTTTCAAAATATTTTGATGAGTTACCAGGACGTTTTGGTCTGACACTGGATATGTGGACCTCAAGTCAATCTGTAGGCTATGTATTTATCACGGGACATTTTGTTGATAGTGACTGGAAGTTGCAGAAGAGAATTCTCAATGTTGTGATGGAACCATGCCCTGAGTCTGACTCTGCTCTCAGTCATGCTGTATCTGCCTGCATTTCTGATTGGAATTTGGAGGGTAGGCTGTTCACAATTACTTGTAATCAGCCACTTACTGAAGTTGCCCTTGAGAACCTTAGACCTCTACTCTCTGTGAAGAATCCACTTATCTTCAATGGTCAGTTGCTAATTGGACATTGCATTGCCCGTACTTTAAGCAATGTTGCATATGATTTGTTGAGCTCAGCACAAGGCATTGTCAATAAAATCCGGGAAAGTGTGAAATATGTGAAGACTTCAGAATCACACGAGGATAAATTCCTGGATCTTAAGGAACACCTTCAGGTTCCCAGTGAAAAGAGCCTTTTTATTGATGACCAAACCAAATGGAATACAACATATCAAATGTTGGTTGCAGCTTCTGAACTGAAGGAAGTGTTTTCCTGTTTAGACACTTCTGATCCTGATTACAAAGGAGCCCCATCTATTCCAGACTGGAAACTTGTTGAGATCCTTTGCACATACTTGAAGCCCCTTTATGATGCAGCAAACATTCTTATGACAACAACTTATCCCACTGCTATTACATTCTTTCATGAAGTTTGGAAATTACATTTGGATCTATCTCGAGCTGTTAAGAATGAAGATCCCTTCATTAGCGACCTTACCAAACCCATGTACGAAAAGATCGATAAGTACTGGAGAGATTGTAGTCTGGCTTTGGTGATTGCTGTAGTTATGGATCCTCGTTTCAAGATGAAGCTTGTTGAATTCAGTTTCACAAAAATCTACGGCGAGGATGCTCATGCGTTTGTCAAGATTGTTGATGACGGAATTCATGAGCTGTTTCATGAGTATGCAACCCTTCCTCTGCCACTAACACCGGCATATGCAGAAGAAGGAAATGCTGGAAGCAATATGAAGATGGAAGGATCCTCTGGAGGAACTTTGTTGTCAGATAATGGTCTTACAGACTTTGATGCCTACATCATGGAAACTTCTACCCATCAGACAAAGTCTGAATTGGATCAGTATCTGGAAGAATCTCTATTGCCACGAGTTCCAGACTTTGATGTATTAGGTTGGTGGAAGCTAAACAAACTTAAGTACCCCACACTTTCCAAGATGGCCCGAGATATATTGGCTATTCCAGTTTCTACCGTTCCTTCTGACTCTATCTTTGATAAAAAGAGCAAAGAGATGGATCAGTATCGAAGTTCCTTGCGTCCAGAGACAGTGGAGGCACTTGTGTGTGCCAAAGACTGGATGCAGTATGGTGCACCCGAATCTTCAACTGCGCTTGTGAAAATGGAATTCTAG

Protein sequence

>Msa0416890

AASLKFGSIRSYRVFVSKPNLSLSLSLSLSLKSPRSRFRHFRSSVPSFRSRHRRSAFPDSDSVDLYLAYGSRRRLTSVLSKVFHSLILPLFPSSTKLKRRGYTDRMATLEEGEVAMSPDVKDETINVDKMDVFEEDKLAVTHDVKQELNGTDSQPCNDLVTQATGGDANVLDNAKECQKNEPEISESLPKNQVGDQLGDSKATLDKSTTEAPPSIHVVDSEASPNKGVVCSEMQTSNDVAVSETQHSNEDAVPEAQHNNEGVALSEAQHINEEVASENQHNNERVLASETQPTDETIICEAHHNNEEVVSEPHCDDEVVMSEAQPISEVVMSDSQQNNVVLSDSQPSSEVVFSDTQPNNETVMYEAQISNETVLHEALISDEAVMHEAEICNDGVASEARPENELANSTMDPNNQLSHQEILDNHQFADSHNTDDRPIPHNHLQEYDTHPNSHLDNHEALDNHQLPNSETLSPDQLANSQMMSHYDLANNETLHNNQLVSSQAHYEIVNANNFPSYEIVNAETQPNNEEHTPETQPSKRRKKKSIVWEHFTIETVSAGCRRACCKECKQTFAYSTGSKVAGTSHLKRHIAKGACPALLRSLDPNQHAPYTPRSRGSGASNASNTPKRRYRTASTPYIIFDQDRCRHEIARMIIMHDYPLHMVEHPGFVAFVRNLQPQFNMVTFNTIQGDCVATYLTEKQNLSKYFDELPGRFGLTLDMWTSSQSVGYVFITGHFVDSDWKLQKRILNVVMEPCPESDSALSHAVSACISDWNLEGRLFTITCNQPLTEVALENLRPLLSVKNPLIFNGQLLIGHCIARTLSNVAYDLLSSAQGIVNKIRESVKYVKTSESHEDKFLDLKEHLQVPSEKSLFIDDQTKWNTTYQMLVAASELKEVFSCLDTSDPDYKGAPSIPDWKLVEILCTYLKPLYDAANILMTTTYPTAITFFHEVWKLHLDLSRAVKNEDPFISDLTKPMYEKIDKYWRDCSLALVIAVVMDPRFKMKLVEFSFTKIYGEDAHAFVKIVDDGIHELFHEYATLPLPLTPAYAEEGNAGSNMKMEGSSGGTLLSDNGLTDFDAYIMETSTHQTKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILAIPVSTVPSDSIFDKKSKEMDQYRSSLRPETVEALVCAKDWMQYGAPESSTALVKMEF*