AlfalfaGEDB | Msa0437130

M. sativa cultivar zhongmu-4 / Msa0437130

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047470	Msa0437130	-0.808419	3.126166e-50	-8.615850e-47
Msa0112710	Msa0437130	0.811725	6.064005e-51	-8.615850e-47
Msa0416890	Msa0437130	0.841182	5.547298e-58	-8.615850e-47
Msa0437130	Msa0440130	0.850214	1.962344e-60	-8.615850e-47
Msa0437130	Msa0553220	0.817918	2.570279e-52	-8.615850e-47
Msa0437130	Msa0670660	-0.800115	1.676449e-48	-8.615850e-47
Msa0437130	Msa0692110	-0.826123	3.223754e-54	-8.615850e-47
Msa0437130	Msa1025100	-0.802332	5.899329e-49	-8.615850e-47
Msa0437130	Msa1078390	0.899196	2.518526e-77	-8.615850e-47
Msa0437130	Msa1085120	0.981395	1.740745e-152	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 322 sgRNAs with CRISPR-Local

Find 746 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCACAACAATGAGA+GGG	0.668751	3_2:+91111752	Msa0437130:three_prime_UTR
AAAACCCTAGATCTCGCTTC+CGG	0.540792	3_2:+91110311	Msa0437130:CDS
AAAACGCGGCACGGCAGTGC+CGG	0.515271	3_2:-91110366	None:intergenic
AAACGAACCCGATAAGATCT+AGG	0.380461	3_2:-91110265	None:intergenic
AAACGACGTTATAGAACTGC+TGG	0.553739	3_2:+91112854	Msa0437130:three_prime_UTR
AAATGCAGACAGATACAGCA+TGG	0.665432	3_2:-91113261	None:intergenic
AAATTGGCTAATTCATTCTC+AGG	0.423893	3_2:-91112092	None:intergenic
AAATTTACGCTGATTCCTGA+TGG	0.524953	3_2:-91114766	None:intergenic
AAATTTACGCTGATTCCTGA+TGG	0.527057	3_2:-91105336	None:intergenic
AAATTTGAGGTGGCAATCAG+TGG	0.567419	3_2:+91114783	Msa0437130:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAGGACTACTTGTATTA+GGG	-	chr3_2:91105294-91105313	None:intergenic	30.0%
AGCGTAAATTTGACTATTTG+AGG	+	chr3_2:91105348-91105367	Msa0437130:CDS	30.0%
GTAAATTTGACTATTTGAGG+TGG	+	chr3_2:91105351-91105370	Msa0437130:CDS	30.0%
TAGGGAAAACTATATGTCTT+TGG	+	chr3_2:91105518-91105537	Msa0437130:intron	30.0%
TCCATGTGAAAAACATTCAT+TGG	-	chr3_2:91105598-91105617	None:intergenic	30.0%
ACAAGAATTCTCTACATTTG+AGG	+	chr3_2:91105664-91105683	Msa0437130:intron	30.0%
AATCCAACAATGGAAAATAG+TGG	-	chr3_2:91105868-91105887	None:intergenic	30.0%
AAAAACGAAACTCATAAACG+TGG	-	chr3_2:91105921-91105940	None:intergenic	30.0%
GAATGACATTCTTATCTCTT+TGG	+	chr3_2:91106075-91106094	Msa0437130:intron	30.0%
CTCTTTGGATTAAAAGAAGA+AGG	+	chr3_2:91106090-91106109	Msa0437130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	91105131	91115107	91105131	ID=Msa0437130;Name=Msa0437130
chr3_2	mRNA	91105131	91115107	91105131	ID=Msa0437130-mRNA-1;Parent=Msa0437130;Name=Msa0437130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.4\|0.33\|0.5\|0\|0\|6\|3514\|148
chr3_2	exon	91105131	91105136	91105131	ID=Msa0437130-mRNA-1:exon:27221;Parent=Msa0437130-mRNA-1
chr3_2	exon	91105260	91105383	91105260	ID=Msa0437130-mRNA-1:exon:27222;Parent=Msa0437130-mRNA-1
chr3_2	exon	91108837	91108983	91108837	ID=Msa0437130-mRNA-1:exon:27223;Parent=Msa0437130-mRNA-1
chr3_2	exon	91110264	91110418	91110264	ID=Msa0437130-mRNA-1:exon:27224;Parent=Msa0437130-mRNA-1
chr3_2	exon	91111464	91114578	91111464	ID=Msa0437130-mRNA-1:exon:27225;Parent=Msa0437130-mRNA-1
chr3_2	exon	91114694	91115107	91114694	ID=Msa0437130-mRNA-1:exon:27226;Parent=Msa0437130-mRNA-1
chr3_2	CDS	91105131	91105136	91105131	ID=Msa0437130-mRNA-1:cds;Parent=Msa0437130-mRNA-1
chr3_2	CDS	91105260	91105383	91105260	ID=Msa0437130-mRNA-1:cds;Parent=Msa0437130-mRNA-1
chr3_2	CDS	91108837	91108983	91108837	ID=Msa0437130-mRNA-1:cds;Parent=Msa0437130-mRNA-1
chr3_2	CDS	91110264	91110418	91110264	ID=Msa0437130-mRNA-1:cds;Parent=Msa0437130-mRNA-1
chr3_2	CDS	91111464	91111478	91111464	ID=Msa0437130-mRNA-1:cds;Parent=Msa0437130-mRNA-1
chr3_2	three_prime_UTR	91111479	91114578	91111479	ID=Msa0437130-mRNA-1:three_prime_utr;Parent=Msa0437130-mRNA-1
chr3_2	three_prime_UTR	91114694	91115107	91114694	ID=Msa0437130-mRNA-1:three_prime_utr;Parent=Msa0437130-mRNA-1

Gene Sequence

>Msa0437130

ATGTTGATGCTAGAACTAGTAAATAGATCCTACCTTTCCCTAATACAAGTAGTCCTTGATGTGCAGCTCAATTTGATTTGTTCCATCAGGAATCAGCGTAAATTTGACTATTTGAGGTGGCAGCGTAAAAAGAACCGGAACAGGAAAGATGGAACCGGATCCCAAACACCAAGACATCTCCTCCAGTCACCGATATCTCCTTCACCTGATCCGGAACTGGGTCGGAACGGAGCACCACCAACATGGAACACAGTCGGAACAAGGAAGTTGAATGCAGCCCTAGATCTTATCGGGTTCGTTTCAAGCCCAATCTCTCTCTCTCGGAAAACCCTAGATCTCGCTTCCGGCACCGCCGCAGCACGGTTCCAAGCTTCCGCTTCCGGCACTGCCGTGCCGCGTTTTTCACATTCAGATTCTGTTTACTTATATCTGGAGGGTATAAACTGA

Protein sequence

>Msa0437130

MLMLELVNRSYLSLIQVVLDVQLNLICSIRNQRKFDYLRWQRKKNRNRKDGTGSQTPRHLLQSPISPSPDPELGRNGAPPTWNTVGTRKLNAALDLIGFVSSPISLSRKTLDLASGTAAARFQASASGTAVPRFSHSDSVYLYLEGIN*