Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087640 | XP_003591220.1 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087640 | sp|Q9XGI7|NAS_SOLLC | 64.630 | 311 | 97 | 2 | 8 | 307 | 9 | 317 | 1.64e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087640 | G7I9I0 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa1087640 | 0.802501 | 5.445325e-49 | -8.615850e-47 |
| Msa0790390 | Msa1087640 | 0.813607 | 2.349968e-51 | -8.615850e-47 |
| Msa0186020 | Msa1087640 | 0.996699 | 5.319956e-231 | -8.615850e-47 |
| Msa0188680 | Msa1087640 | 0.803822 | 2.901535e-49 | -8.615850e-47 |
| Msa0465670 | Msa1087640 | 0.818280 | 2.128669e-52 | -8.615850e-47 |
| Msa1087640 | Msa1302190 | 0.803527 | 3.340369e-49 | -8.615850e-47 |
| Msa1087640 | Msa1403580 | 0.800924 | 1.147167e-48 | -8.615850e-47 |
| Msa1087640 | Msa1443290 | 0.804357 | 2.245267e-49 | -8.615850e-47 |
| Msa0270220 | Msa1087640 | 0.802750 | 4.837031e-49 | -8.615850e-47 |
| Msa0307830 | Msa1087640 | 0.804321 | 2.284955e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087640 | MtrunA17_Chr1g0192781 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Msa1087640 | MtrunA17_Chr7g0271801 | 71.963 | 321 | 74 | 4 | 1 | 308 | 1 | 318 | 3.24e-164 | 459 |
| Msa1087640 | MtrunA17_Chr2g0294441 | 64.103 | 273 | 96 | 2 | 1 | 271 | 1 | 273 | 1.46e-124 | 357 |
| Msa1087640 | MtrunA17_Chr2g0312871 | 49.438 | 267 | 135 | 0 | 5 | 271 | 15 | 281 | 1.84e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1087640 | AT1G09240.1 | 62.284 | 289 | 101 | 4 | 1 | 281 | 1 | 289 | 1.20e-128 | 369 |
| Msa1087640 | AT1G56430.1 | 63.838 | 271 | 95 | 3 | 4 | 271 | 5 | 275 | 2.70e-127 | 366 |
| Msa1087640 | AT5G04950.1 | 55.975 | 318 | 123 | 5 | 1 | 303 | 1 | 316 | 1.41e-122 | 354 |
| Msa1087640 | AT5G56080.1 | 60.949 | 274 | 104 | 3 | 1 | 271 | 1 | 274 | 1.72e-120 | 349 |
| Msa1087640 | AT4G26483.1 | 60.000 | 60 | 22 | 1 | 220 | 277 | 1 | 60 | 2.77e-15 | 70.5 |
Find 60 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAAAATTGCCTTTAT+TGG | 0.082184 | 7_3:+414052 | Msa1087640:CDS |
| TTGAGGTAGTTTGAATAATA+AGG | 0.175075 | 7_3:-413980 | None:intergenic |
| AGAATATGAAGTTGTTTATT+TGG | 0.203723 | 7_3:+414264 | Msa1087640:CDS |
| AACATACGCTTTGATAATTC+AGG | 0.264334 | 7_3:-414199 | None:intergenic |
| ACCACATAGCCTAATGAGTT+TGG | 0.315382 | 7_3:-413876 | None:intergenic |
| TTGAGTAGTGACTTTCTAAA+TGG | 0.330810 | 7_3:-413910 | None:intergenic |
| TGAGGTAGTTTGAATAATAA+GGG | 0.360223 | 7_3:-413979 | None:intergenic |
| GAGTAATATGATTGAGGAAT+TGG | 0.382360 | 7_3:+414579 | Msa1087640:CDS |
| AGGGACATTAGTGGAATGTT+TGG | 0.382437 | 7_3:-414032 | None:intergenic |
| TCATCGGAACGACATTTGTT+TGG | 0.395433 | 7_3:-414523 | None:intergenic |
| ATGGTTGATCAGTGGTTTGA+AGG | 0.398617 | 7_3:-414554 | None:intergenic |
| CAATGATCTTCGAGGCTTTG+AGG | 0.404062 | 7_3:+414423 | Msa1087640:CDS |
| AAAATTGCCTTTATTGGCTC+AGG | 0.404555 | 7_3:+414058 | Msa1087640:CDS |
| TGAAACATCCAATATATCAT+TGG | 0.412368 | 7_3:-414230 | None:intergenic |
| CAAGCAAGAAGCTTTGGAAT+TGG | 0.412940 | 7_3:-414164 | None:intergenic |
| TGAAACCAAGCAAGAAGCTT+TGG | 0.415124 | 7_3:-414170 | None:intergenic |
| GCTAAGTTTGGTAACATCAA+TGG | 0.417679 | 7_3:-413831 | None:intergenic |
| AAGCTTTGGAATTGGCTAAA+GGG | 0.426256 | 7_3:-414156 | None:intergenic |
| TGGTTAGGATATTGAATTCA+AGG | 0.430102 | 7_3:-414012 | None:intergenic |
| CATTAGTGGAATGTTTGGTT+AGG | 0.432644 | 7_3:-414027 | None:intergenic |
| CTCAAAGCCTCGAAGATCAT+TGG | 0.441896 | 7_3:-414422 | None:intergenic |
| TGTTTATTTGGCAGCACTTG+TGG | 0.443671 | 7_3:+414276 | Msa1087640:CDS |
| AAATTAGATCCAAACTCATT+AGG | 0.446761 | 7_3:+413867 | Msa1087640:CDS |
| GTTTATTTGGCAGCACTTGT+GGG | 0.458446 | 7_3:+414277 | Msa1087640:CDS |
| CGGGAGCACTTCTCATGCTC+AGG | 0.459497 | 7_3:+414356 | Msa1087640:CDS |
| CTAAGTTTGGTAACATCAAT+GGG | 0.471982 | 7_3:-413830 | None:intergenic |
| ACAAGTGAAGTAAGTGGAAG+TGG | 0.474698 | 7_3:-414082 | None:intergenic |
| CAATTCCAAAGCTTCTTGCT+TGG | 0.481966 | 7_3:+414165 | Msa1087640:CDS |
| GAAGCTTTGGAATTGGCTAA+AGG | 0.486375 | 7_3:-414157 | None:intergenic |
| AGATCATTGGTATCAACAAC+CGG | 0.488411 | 7_3:-414409 | None:intergenic |
| AAGTGGACCTGAGCCAATAA+AGG | 0.493489 | 7_3:-414065 | None:intergenic |
| GTTGATACCAATGATCTTCG+AGG | 0.499486 | 7_3:+414415 | Msa1087640:CDS |
| GAATAAAATCATTGAGCACT+TGG | 0.501973 | 7_3:+414318 | Msa1087640:CDS |
| ATTATTATATGAAGCTATGA+TGG | 0.524264 | 7_3:-413933 | None:intergenic |
| ATTCAAGGAGACTAAGTTTG+AGG | 0.524306 | 7_3:-413997 | None:intergenic |
| CATGCATGTGAGAACAAGTT+TGG | 0.533798 | 7_3:-413798 | None:intergenic |
| CCTCAATCATATTACTCCCA+TGG | 0.537816 | 7_3:-414573 | None:intergenic |
| TTGTTTGGTATTAAAACCAT+CGG | 0.545141 | 7_3:-414508 | None:intergenic |
| TCCAAACTCATTAGGCTATG+TGG | 0.546869 | 7_3:+413875 | Msa1087640:CDS |
| GCTAAGACAAGTGAAGTAAG+TGG | 0.548518 | 7_3:-414088 | None:intergenic |
| CCATGGGAGTAATATGATTG+AGG | 0.558526 | 7_3:+414573 | Msa1087640:CDS |
| CTCATGCTCAGGAGTGCTCA+CGG | 0.560813 | 7_3:+414367 | Msa1087640:CDS |
| CTGAGCATGAGAAGTGCTCC+CGG | 0.560966 | 7_3:-414355 | None:intergenic |
| TGAGCACTTGGCTAAGTACA+TGG | 0.562129 | 7_3:+414330 | Msa1087640:CDS |
| CTTGGCTAAGTACATGGCAC+CGG | 0.568991 | 7_3:+414336 | Msa1087640:CDS |
| GAATTGATAACCTCGTCTGT+TGG | 0.576403 | 7_3:-414463 | None:intergenic |
| AAAATATTGAGTTGATTGAG+TGG | 0.578772 | 7_3:-413956 | None:intergenic |
| TTTGAAGGCTTGAATCTCAT+CGG | 0.581027 | 7_3:-414539 | None:intergenic |
| TTGGTAACATCAATGGGACT+AGG | 0.586535 | 7_3:-413824 | None:intergenic |
| TAGTGTCGACATGGTTGGCA+AGG | 0.595518 | 7_3:+413682 | None:intergenic |
| TTACTCCCATGGTTGATCAG+TGG | 0.597719 | 7_3:-414562 | None:intergenic |
| TTCAAACCACTGATCAACCA+TGG | 0.608081 | 7_3:+414556 | Msa1087640:CDS |
| AGGCTATGTGGTGAAGCTGA+AGG | 0.608399 | 7_3:+413887 | Msa1087640:CDS |
| CATAGCGCGCAAGTATCCGA+TGG | 0.624484 | 7_3:+414492 | Msa1087640:CDS |
| CCTCATAGTGTCGACATGGT+TGG | 0.629181 | 7_3:+413677 | None:intergenic |
| TTGGCTAAGTACATGGCACC+GGG | 0.642493 | 7_3:+414337 | Msa1087640:CDS |
| TCAAACCACTGATCAACCAT+GGG | 0.645985 | 7_3:+414557 | Msa1087640:CDS |
| GTAACATCAATGGGACTAGG+TGG | 0.681662 | 7_3:-413821 | None:intergenic |
| TGTGTTTCATCCAACAGACG+AGG | 0.716463 | 7_3:+414453 | Msa1087640:CDS |
| ACTTGTGGGAATGAGTGTTG+AGG | 0.717943 | 7_3:+414291 | Msa1087640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATATGAAGCTATGA+TGG | - | chr7_3:413936-413955 | None:intergenic | 20.0% |
| !!! | CAATAAAGGCAATTTTATTA+GGG | - | chr7_3:414054-414073 | None:intergenic | 20.0% |
| !!! | TTTTTACACCAATGATATAT+TGG | + | chr7_3:414222-414241 | Msa1087640:CDS | 20.0% |
| !! | AGAATATGAAGTTGTTTATT+TGG | + | chr7_3:414264-414283 | Msa1087640:CDS | 20.0% |
| !! | ATTATTATATGAAGCTATGA+TGG | - | chr7_3:413936-413955 | None:intergenic | 20.0% |
| !!! | CAATAAAGGCAATTTTATTA+GGG | - | chr7_3:414054-414073 | None:intergenic | 20.0% |
| !!! | TTTTTACACCAATGATATAT+TGG | + | chr7_3:414222-414241 | Msa1087640:CDS | 20.0% |
| !! | AGAATATGAAGTTGTTTATT+TGG | + | chr7_3:414264-414283 | Msa1087640:CDS | 20.0% |
| ! | AAATTAGATCCAAACTCATT+AGG | + | chr7_3:413867-413886 | Msa1087640:CDS | 25.0% |
| !!! | AAAATATTGAGTTGATTGAG+TGG | - | chr7_3:413959-413978 | None:intergenic | 25.0% |
| ! | TGAGGTAGTTTGAATAATAA+GGG | - | chr7_3:413982-414001 | None:intergenic | 25.0% |
| ! | TTGAGGTAGTTTGAATAATA+AGG | - | chr7_3:413983-414002 | None:intergenic | 25.0% |
| !! | AATTTTATTAGGGACATTAG+TGG | - | chr7_3:414044-414063 | None:intergenic | 25.0% |
| !! | CCAATAAAGGCAATTTTATT+AGG | - | chr7_3:414055-414074 | None:intergenic | 25.0% |
| ! | CCTAATAAAATTGCCTTTAT+TGG | + | chr7_3:414052-414071 | Msa1087640:CDS | 25.0% |
| !! | TGTGAAAAATTGTGTTTTGT+AGG | - | chr7_3:414123-414142 | None:intergenic | 25.0% |
| ! | TGAAACATCCAATATATCAT+TGG | - | chr7_3:414233-414252 | None:intergenic | 25.0% |
| ! | TTGTTTGGTATTAAAACCAT+CGG | - | chr7_3:414511-414530 | None:intergenic | 25.0% |
| ! | AAATTAGATCCAAACTCATT+AGG | + | chr7_3:413867-413886 | Msa1087640:CDS | 25.0% |
| !!! | AAAATATTGAGTTGATTGAG+TGG | - | chr7_3:413959-413978 | None:intergenic | 25.0% |
| ! | TGAGGTAGTTTGAATAATAA+GGG | - | chr7_3:413982-414001 | None:intergenic | 25.0% |
| ! | TTGAGGTAGTTTGAATAATA+AGG | - | chr7_3:413983-414002 | None:intergenic | 25.0% |
| !! | AATTTTATTAGGGACATTAG+TGG | - | chr7_3:414044-414063 | None:intergenic | 25.0% |
| !! | CCAATAAAGGCAATTTTATT+AGG | - | chr7_3:414055-414074 | None:intergenic | 25.0% |
| ! | CCTAATAAAATTGCCTTTAT+TGG | + | chr7_3:414052-414071 | Msa1087640:CDS | 25.0% |
| !! | TGTGAAAAATTGTGTTTTGT+AGG | - | chr7_3:414123-414142 | None:intergenic | 25.0% |
| ! | TGAAACATCCAATATATCAT+TGG | - | chr7_3:414233-414252 | None:intergenic | 25.0% |
| ! | TTGTTTGGTATTAAAACCAT+CGG | - | chr7_3:414511-414530 | None:intergenic | 25.0% |
| ! | CTAAGTTTGGTAACATCAAT+GGG | - | chr7_3:413833-413852 | None:intergenic | 30.0% |
| ! | TTGAACTTTTGTGCTAAGTT+TGG | - | chr7_3:413846-413865 | None:intergenic | 30.0% |
| TTGAGTAGTGACTTTCTAAA+TGG | - | chr7_3:413913-413932 | None:intergenic | 30.0% | |
| TGGTTAGGATATTGAATTCA+AGG | - | chr7_3:414015-414034 | None:intergenic | 30.0% | |
| ! | AACATACGCTTTGATAATTC+AGG | - | chr7_3:414202-414221 | None:intergenic | 30.0% |
| GAATAAAATCATTGAGCACT+TGG | + | chr7_3:414318-414337 | Msa1087640:CDS | 30.0% | |
| GAGTAATATGATTGAGGAAT+TGG | + | chr7_3:414579-414598 | Msa1087640:CDS | 30.0% | |
| ! | CTAAGTTTGGTAACATCAAT+GGG | - | chr7_3:413833-413852 | None:intergenic | 30.0% |
| ! | TTGAACTTTTGTGCTAAGTT+TGG | - | chr7_3:413846-413865 | None:intergenic | 30.0% |
| TTGAGTAGTGACTTTCTAAA+TGG | - | chr7_3:413913-413932 | None:intergenic | 30.0% | |
| TGGTTAGGATATTGAATTCA+AGG | - | chr7_3:414015-414034 | None:intergenic | 30.0% | |
| ! | AACATACGCTTTGATAATTC+AGG | - | chr7_3:414202-414221 | None:intergenic | 30.0% |
| GAATAAAATCATTGAGCACT+TGG | + | chr7_3:414318-414337 | Msa1087640:CDS | 30.0% | |
| GAGTAATATGATTGAGGAAT+TGG | + | chr7_3:414579-414598 | Msa1087640:CDS | 30.0% | |
| !! | AGTGTGTTGACATTTTTGCA+AGG | - | chr7_3:413773-413792 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGGTAACATCAA+TGG | - | chr7_3:413834-413853 | None:intergenic | 35.0% |
| ATTCAAGGAGACTAAGTTTG+AGG | - | chr7_3:414000-414019 | None:intergenic | 35.0% | |
| CATTAGTGGAATGTTTGGTT+AGG | - | chr7_3:414030-414049 | None:intergenic | 35.0% | |
| !! | AAAATTGCCTTTATTGGCTC+AGG | + | chr7_3:414058-414077 | Msa1087640:CDS | 35.0% |
| ! | TGTGTTTTGTAGGTGATTAG+TGG | - | chr7_3:414113-414132 | None:intergenic | 35.0% |
| !! | AAGCTTTGGAATTGGCTAAA+GGG | - | chr7_3:414159-414178 | None:intergenic | 35.0% |
| AGATCATTGGTATCAACAAC+CGG | - | chr7_3:414412-414431 | None:intergenic | 35.0% | |
| TTTGAAGGCTTGAATCTCAT+CGG | - | chr7_3:414542-414561 | None:intergenic | 35.0% | |
| !! | AGTGTGTTGACATTTTTGCA+AGG | - | chr7_3:413773-413792 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGGTAACATCAA+TGG | - | chr7_3:413834-413853 | None:intergenic | 35.0% |
| ATTCAAGGAGACTAAGTTTG+AGG | - | chr7_3:414000-414019 | None:intergenic | 35.0% | |
| CATTAGTGGAATGTTTGGTT+AGG | - | chr7_3:414030-414049 | None:intergenic | 35.0% | |
| !! | AAAATTGCCTTTATTGGCTC+AGG | + | chr7_3:414058-414077 | Msa1087640:CDS | 35.0% |
| ! | TGTGTTTTGTAGGTGATTAG+TGG | - | chr7_3:414113-414132 | None:intergenic | 35.0% |
| !! | AAGCTTTGGAATTGGCTAAA+GGG | - | chr7_3:414159-414178 | None:intergenic | 35.0% |
| AGATCATTGGTATCAACAAC+CGG | - | chr7_3:414412-414431 | None:intergenic | 35.0% | |
| TTTGAAGGCTTGAATCTCAT+CGG | - | chr7_3:414542-414561 | None:intergenic | 35.0% | |
| CATGCATGTGAGAACAAGTT+TGG | - | chr7_3:413801-413820 | None:intergenic | 40.0% | |
| ! | TTGGTAACATCAATGGGACT+AGG | - | chr7_3:413827-413846 | None:intergenic | 40.0% |
| TCCAAACTCATTAGGCTATG+TGG | + | chr7_3:413875-413894 | Msa1087640:CDS | 40.0% | |
| ACCACATAGCCTAATGAGTT+TGG | - | chr7_3:413879-413898 | None:intergenic | 40.0% | |
| AGGGACATTAGTGGAATGTT+TGG | - | chr7_3:414035-414054 | None:intergenic | 40.0% | |
| ACAAGTGAAGTAAGTGGAAG+TGG | - | chr7_3:414085-414104 | None:intergenic | 40.0% | |
| GCTAAGACAAGTGAAGTAAG+TGG | - | chr7_3:414091-414110 | None:intergenic | 40.0% | |
| !! | GAAGCTTTGGAATTGGCTAA+AGG | - | chr7_3:414160-414179 | None:intergenic | 40.0% |
| !! | CAAGCAAGAAGCTTTGGAAT+TGG | - | chr7_3:414167-414186 | None:intergenic | 40.0% |
| CAATTCCAAAGCTTCTTGCT+TGG | + | chr7_3:414165-414184 | Msa1087640:CDS | 40.0% | |
| TGAAACCAAGCAAGAAGCTT+TGG | - | chr7_3:414173-414192 | None:intergenic | 40.0% | |
| TGTTTATTTGGCAGCACTTG+TGG | + | chr7_3:414276-414295 | Msa1087640:CDS | 40.0% | |
| GTTTATTTGGCAGCACTTGT+GGG | + | chr7_3:414277-414296 | Msa1087640:CDS | 40.0% | |
| GTTGATACCAATGATCTTCG+AGG | + | chr7_3:414415-414434 | Msa1087640:CDS | 40.0% | |
| ! | GAATTGATAACCTCGTCTGT+TGG | - | chr7_3:414466-414485 | None:intergenic | 40.0% |
| TCATCGGAACGACATTTGTT+TGG | - | chr7_3:414526-414545 | None:intergenic | 40.0% | |
| ATGGTTGATCAGTGGTTTGA+AGG | - | chr7_3:414557-414576 | None:intergenic | 40.0% | |
| TTCAAACCACTGATCAACCA+TGG | + | chr7_3:414556-414575 | Msa1087640:CDS | 40.0% | |
| TCAAACCACTGATCAACCAT+GGG | + | chr7_3:414557-414576 | Msa1087640:CDS | 40.0% | |
| CCTCAATCATATTACTCCCA+TGG | - | chr7_3:414576-414595 | None:intergenic | 40.0% | |
| CCATGGGAGTAATATGATTG+AGG | + | chr7_3:414573-414592 | Msa1087640:CDS | 40.0% | |
| CATGCATGTGAGAACAAGTT+TGG | - | chr7_3:413801-413820 | None:intergenic | 40.0% | |
| ! | TTGGTAACATCAATGGGACT+AGG | - | chr7_3:413827-413846 | None:intergenic | 40.0% |
| TCCAAACTCATTAGGCTATG+TGG | + | chr7_3:413875-413894 | Msa1087640:CDS | 40.0% | |
| ACCACATAGCCTAATGAGTT+TGG | - | chr7_3:413879-413898 | None:intergenic | 40.0% | |
| AGGGACATTAGTGGAATGTT+TGG | - | chr7_3:414035-414054 | None:intergenic | 40.0% | |
| ACAAGTGAAGTAAGTGGAAG+TGG | - | chr7_3:414085-414104 | None:intergenic | 40.0% | |
| GCTAAGACAAGTGAAGTAAG+TGG | - | chr7_3:414091-414110 | None:intergenic | 40.0% | |
| !! | GAAGCTTTGGAATTGGCTAA+AGG | - | chr7_3:414160-414179 | None:intergenic | 40.0% |
| !! | CAAGCAAGAAGCTTTGGAAT+TGG | - | chr7_3:414167-414186 | None:intergenic | 40.0% |
| CAATTCCAAAGCTTCTTGCT+TGG | + | chr7_3:414165-414184 | Msa1087640:CDS | 40.0% | |
| TGAAACCAAGCAAGAAGCTT+TGG | - | chr7_3:414173-414192 | None:intergenic | 40.0% | |
| TGTTTATTTGGCAGCACTTG+TGG | + | chr7_3:414276-414295 | Msa1087640:CDS | 40.0% | |
| GTTTATTTGGCAGCACTTGT+GGG | + | chr7_3:414277-414296 | Msa1087640:CDS | 40.0% | |
| GTTGATACCAATGATCTTCG+AGG | + | chr7_3:414415-414434 | Msa1087640:CDS | 40.0% | |
| ! | GAATTGATAACCTCGTCTGT+TGG | - | chr7_3:414466-414485 | None:intergenic | 40.0% |
| TCATCGGAACGACATTTGTT+TGG | - | chr7_3:414526-414545 | None:intergenic | 40.0% | |
| ATGGTTGATCAGTGGTTTGA+AGG | - | chr7_3:414557-414576 | None:intergenic | 40.0% | |
| TTCAAACCACTGATCAACCA+TGG | + | chr7_3:414556-414575 | Msa1087640:CDS | 40.0% | |
| TCAAACCACTGATCAACCAT+GGG | + | chr7_3:414557-414576 | Msa1087640:CDS | 40.0% | |
| CCTCAATCATATTACTCCCA+TGG | - | chr7_3:414576-414595 | None:intergenic | 40.0% | |
| CCATGGGAGTAATATGATTG+AGG | + | chr7_3:414573-414592 | Msa1087640:CDS | 40.0% | |
| GTAACATCAATGGGACTAGG+TGG | - | chr7_3:413824-413843 | None:intergenic | 45.0% | |
| AAGTGGACCTGAGCCAATAA+AGG | - | chr7_3:414068-414087 | None:intergenic | 45.0% | |
| ! | ACTTGTGGGAATGAGTGTTG+AGG | + | chr7_3:414291-414310 | Msa1087640:CDS | 45.0% |
| TGAGCACTTGGCTAAGTACA+TGG | + | chr7_3:414330-414349 | Msa1087640:CDS | 45.0% | |
| ! | TGCTCGTGCTTTTCTGTATC+CGG | + | chr7_3:414390-414409 | Msa1087640:CDS | 45.0% |
| CTCAAAGCCTCGAAGATCAT+TGG | - | chr7_3:414425-414444 | None:intergenic | 45.0% | |
| CAATGATCTTCGAGGCTTTG+AGG | + | chr7_3:414423-414442 | Msa1087640:CDS | 45.0% | |
| TGTGTTTCATCCAACAGACG+AGG | + | chr7_3:414453-414472 | Msa1087640:CDS | 45.0% | |
| TTACTCCCATGGTTGATCAG+TGG | - | chr7_3:414565-414584 | None:intergenic | 45.0% | |
| GTAACATCAATGGGACTAGG+TGG | - | chr7_3:413824-413843 | None:intergenic | 45.0% | |
| AAGTGGACCTGAGCCAATAA+AGG | - | chr7_3:414068-414087 | None:intergenic | 45.0% | |
| ! | ACTTGTGGGAATGAGTGTTG+AGG | + | chr7_3:414291-414310 | Msa1087640:CDS | 45.0% |
| TGAGCACTTGGCTAAGTACA+TGG | + | chr7_3:414330-414349 | Msa1087640:CDS | 45.0% | |
| ! | TGCTCGTGCTTTTCTGTATC+CGG | + | chr7_3:414390-414409 | Msa1087640:CDS | 45.0% |
| CTCAAAGCCTCGAAGATCAT+TGG | - | chr7_3:414425-414444 | None:intergenic | 45.0% | |
| CAATGATCTTCGAGGCTTTG+AGG | + | chr7_3:414423-414442 | Msa1087640:CDS | 45.0% | |
| TGTGTTTCATCCAACAGACG+AGG | + | chr7_3:414453-414472 | Msa1087640:CDS | 45.0% | |
| TTACTCCCATGGTTGATCAG+TGG | - | chr7_3:414565-414584 | None:intergenic | 45.0% | |
| AGGCTATGTGGTGAAGCTGA+AGG | + | chr7_3:413887-413906 | Msa1087640:CDS | 50.0% | |
| CTTGGCTAAGTACATGGCAC+CGG | + | chr7_3:414336-414355 | Msa1087640:CDS | 50.0% | |
| TTGGCTAAGTACATGGCACC+GGG | + | chr7_3:414337-414356 | Msa1087640:CDS | 50.0% | |
| AGGCTATGTGGTGAAGCTGA+AGG | + | chr7_3:413887-413906 | Msa1087640:CDS | 50.0% | |
| CTTGGCTAAGTACATGGCAC+CGG | + | chr7_3:414336-414355 | Msa1087640:CDS | 50.0% | |
| TTGGCTAAGTACATGGCACC+GGG | + | chr7_3:414337-414356 | Msa1087640:CDS | 50.0% | |
| !! | CTGAGCATGAGAAGTGCTCC+CGG | - | chr7_3:414358-414377 | None:intergenic | 55.0% |
| !! | CTCATGCTCAGGAGTGCTCA+CGG | + | chr7_3:414367-414386 | Msa1087640:CDS | 55.0% |
| CATAGCGCGCAAGTATCCGA+TGG | + | chr7_3:414492-414511 | Msa1087640:CDS | 55.0% | |
| !! | CTGAGCATGAGAAGTGCTCC+CGG | - | chr7_3:414358-414377 | None:intergenic | 55.0% |
| !! | CTCATGCTCAGGAGTGCTCA+CGG | + | chr7_3:414367-414386 | Msa1087640:CDS | 55.0% |
| CATAGCGCGCAAGTATCCGA+TGG | + | chr7_3:414492-414511 | Msa1087640:CDS | 55.0% | |
| !! | CGGGAGCACTTCTCATGCTC+AGG | + | chr7_3:414356-414375 | Msa1087640:CDS | 60.0% |
| !! | CGGGAGCACTTCTCATGCTC+AGG | + | chr7_3:414356-414375 | Msa1087640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 413692 | 414618 | 413692 | ID=Msa1087640;Name=Msa1087640 |
| chr7_3 | mRNA | 413692 | 414618 | 413692 | ID=Msa1087640-mRNA-1;Parent=Msa1087640;Name=Msa1087640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|308 |
| chr7_3 | exon | 413692 | 414618 | 413692 | ID=Msa1087640-mRNA-1:exon:153;Parent=Msa1087640-mRNA-1 |
| chr7_3 | CDS | 413692 | 414618 | 413692 | ID=Msa1087640-mRNA-1:cds;Parent=Msa1087640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
