Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186020 | XP_003591220.1 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186020 | sp|Q9XGI7|NAS_SOLLC | 64.630 | 311 | 97 | 2 | 8 | 307 | 9 | 317 | 1.64e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186020 | G7I9I0 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0186020 | 0.803720 | 3.046580e-49 | -8.615850e-47 |
| Msa0186020 | Msa0188680 | 0.804569 | 2.028398e-49 | -8.615850e-47 |
| Msa0186020 | Msa0270220 | 0.801973 | 6.992739e-49 | -8.615850e-47 |
| Msa0186020 | Msa0307830 | 0.801948 | 7.076590e-49 | -8.615850e-47 |
| Msa0186020 | Msa0465670 | 0.818723 | 1.688872e-52 | -8.615850e-47 |
| Msa0186020 | Msa0790390 | 0.812445 | 4.223821e-51 | -8.615850e-47 |
| Msa0186020 | Msa1087640 | 0.996699 | 5.319956e-231 | -8.615850e-47 |
| Msa0186020 | Msa1143930 | 0.802231 | 6.187899e-49 | -8.615850e-47 |
| Msa0186020 | Msa1302190 | 0.805913 | 1.060972e-49 | -8.615850e-47 |
| Msa0186020 | Msa1443290 | 0.803366 | 3.607524e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186020 | MtrunA17_Chr1g0192781 | 97.727 | 308 | 7 | 0 | 1 | 308 | 34 | 341 | 0.0 | 615 |
| Msa0186020 | MtrunA17_Chr7g0271801 | 71.963 | 321 | 74 | 4 | 1 | 308 | 1 | 318 | 3.24e-164 | 459 |
| Msa0186020 | MtrunA17_Chr2g0294441 | 64.103 | 273 | 96 | 2 | 1 | 271 | 1 | 273 | 1.46e-124 | 357 |
| Msa0186020 | MtrunA17_Chr2g0312871 | 49.438 | 267 | 135 | 0 | 5 | 271 | 15 | 281 | 1.84e-93 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0186020 | AT1G09240.1 | 62.284 | 289 | 101 | 4 | 1 | 281 | 1 | 289 | 1.20e-128 | 369 |
| Msa0186020 | AT1G56430.1 | 63.838 | 271 | 95 | 3 | 4 | 271 | 5 | 275 | 2.70e-127 | 366 |
| Msa0186020 | AT5G04950.1 | 55.975 | 318 | 123 | 5 | 1 | 303 | 1 | 316 | 1.41e-122 | 354 |
| Msa0186020 | AT5G56080.1 | 60.949 | 274 | 104 | 3 | 1 | 271 | 1 | 274 | 1.72e-120 | 349 |
| Msa0186020 | AT4G26483.1 | 60.000 | 60 | 22 | 1 | 220 | 277 | 1 | 60 | 2.77e-15 | 70.5 |
Find 60 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAAAATTGCCTTTAT+TGG | 0.082184 | 2_1:-666762 | Msa0186020:CDS |
| TTGAGGTAGTTTGAATAATA+AGG | 0.175075 | 2_1:+666834 | None:intergenic |
| AGAATATGAAGTTGTTTATT+TGG | 0.203723 | 2_1:-666550 | Msa0186020:CDS |
| AACATACGCTTTGATAATTC+AGG | 0.264334 | 2_1:+666615 | None:intergenic |
| ACCACATAGCCTAATGAGTT+TGG | 0.315382 | 2_1:+666938 | None:intergenic |
| TTGAGTAGTGACTTTCTAAA+TGG | 0.330810 | 2_1:+666904 | None:intergenic |
| TGAGGTAGTTTGAATAATAA+GGG | 0.360223 | 2_1:+666835 | None:intergenic |
| GAGTAATATGATTGAGGAAT+TGG | 0.382360 | 2_1:-666235 | Msa0186020:CDS |
| AGGGACATTAGTGGAATGTT+TGG | 0.382437 | 2_1:+666782 | None:intergenic |
| TCATCGGAACGACATTTGTT+TGG | 0.395433 | 2_1:+666291 | None:intergenic |
| ATGGTTGATCAGTGGTTTGA+AGG | 0.398617 | 2_1:+666260 | None:intergenic |
| CAATGATCTTCGAGGCTTTG+AGG | 0.404062 | 2_1:-666391 | Msa0186020:CDS |
| AAAATTGCCTTTATTGGCTC+AGG | 0.404555 | 2_1:-666756 | Msa0186020:CDS |
| TGAAACATCCAATATATCAT+TGG | 0.412368 | 2_1:+666584 | None:intergenic |
| CAAGCAAGAAGCTTTGGAAT+TGG | 0.412940 | 2_1:+666650 | None:intergenic |
| TGAAACCAAGCAAGAAGCTT+TGG | 0.415124 | 2_1:+666644 | None:intergenic |
| GCTAAGTTTGGTAACATCAA+TGG | 0.417679 | 2_1:+666983 | None:intergenic |
| AAGCTTTGGAATTGGCTAAA+GGG | 0.426256 | 2_1:+666658 | None:intergenic |
| TGGTTAGGATATTGAATTCA+AGG | 0.430102 | 2_1:+666802 | None:intergenic |
| CATTAGTGGAATGTTTGGTT+AGG | 0.432644 | 2_1:+666787 | None:intergenic |
| CTCAAAGCCTCGAAGATCAT+TGG | 0.441896 | 2_1:+666392 | None:intergenic |
| TGTTTATTTGGCAGCACTTG+TGG | 0.443671 | 2_1:-666538 | Msa0186020:CDS |
| AAATTAGATCCAAACTCATT+AGG | 0.446761 | 2_1:-666947 | Msa0186020:CDS |
| GTTTATTTGGCAGCACTTGT+GGG | 0.458446 | 2_1:-666537 | Msa0186020:CDS |
| CGGGAGCACTTCTCATGCTC+AGG | 0.459497 | 2_1:-666458 | Msa0186020:CDS |
| CTAAGTTTGGTAACATCAAT+GGG | 0.471982 | 2_1:+666984 | None:intergenic |
| ACAAGTGAAGTAAGTGGAAG+TGG | 0.474698 | 2_1:+666732 | None:intergenic |
| CAATTCCAAAGCTTCTTGCT+TGG | 0.481966 | 2_1:-666649 | Msa0186020:CDS |
| GAAGCTTTGGAATTGGCTAA+AGG | 0.486375 | 2_1:+666657 | None:intergenic |
| AGATCATTGGTATCAACAAC+CGG | 0.488411 | 2_1:+666405 | None:intergenic |
| AAGTGGACCTGAGCCAATAA+AGG | 0.493489 | 2_1:+666749 | None:intergenic |
| GTTGATACCAATGATCTTCG+AGG | 0.499486 | 2_1:-666399 | Msa0186020:CDS |
| GAATAAAATCATTGAGCACT+TGG | 0.501973 | 2_1:-666496 | Msa0186020:CDS |
| ATTATTATATGAAGCTATGA+TGG | 0.524264 | 2_1:+666881 | None:intergenic |
| ATTCAAGGAGACTAAGTTTG+AGG | 0.524306 | 2_1:+666817 | None:intergenic |
| CATGCATGTGAGAACAAGTT+TGG | 0.533798 | 2_1:+667016 | None:intergenic |
| CCTCAATCATATTACTCCCA+TGG | 0.537816 | 2_1:+666241 | None:intergenic |
| TTGTTTGGTATTAAAACCAT+CGG | 0.545141 | 2_1:+666306 | None:intergenic |
| TCCAAACTCATTAGGCTATG+TGG | 0.546869 | 2_1:-666939 | Msa0186020:CDS |
| GCTAAGACAAGTGAAGTAAG+TGG | 0.548518 | 2_1:+666726 | None:intergenic |
| CCATGGGAGTAATATGATTG+AGG | 0.558526 | 2_1:-666241 | Msa0186020:CDS |
| CTCATGCTCAGGAGTGCTCA+CGG | 0.560813 | 2_1:-666447 | Msa0186020:CDS |
| CTGAGCATGAGAAGTGCTCC+CGG | 0.560966 | 2_1:+666459 | None:intergenic |
| TGAGCACTTGGCTAAGTACA+TGG | 0.562129 | 2_1:-666484 | Msa0186020:CDS |
| CTTGGCTAAGTACATGGCAC+CGG | 0.568991 | 2_1:-666478 | Msa0186020:CDS |
| GAATTGATAACCTCGTCTGT+TGG | 0.576403 | 2_1:+666351 | None:intergenic |
| AAAATATTGAGTTGATTGAG+TGG | 0.578772 | 2_1:+666858 | None:intergenic |
| TTTGAAGGCTTGAATCTCAT+CGG | 0.581027 | 2_1:+666275 | None:intergenic |
| TTGGTAACATCAATGGGACT+AGG | 0.586535 | 2_1:+666990 | None:intergenic |
| TAGTGTCGACATGGTTGGCA+AGG | 0.595518 | 2_1:-667132 | None:intergenic |
| TTACTCCCATGGTTGATCAG+TGG | 0.597719 | 2_1:+666252 | None:intergenic |
| TTCAAACCACTGATCAACCA+TGG | 0.608081 | 2_1:-666258 | Msa0186020:CDS |
| AGGCTATGTGGTGAAGCTGA+AGG | 0.608399 | 2_1:-666927 | Msa0186020:CDS |
| CATAGCGCGCAAGTATCCGA+TGG | 0.624484 | 2_1:-666322 | Msa0186020:CDS |
| CCTCATAGTGTCGACATGGT+TGG | 0.629181 | 2_1:-667137 | None:intergenic |
| TTGGCTAAGTACATGGCACC+GGG | 0.642493 | 2_1:-666477 | Msa0186020:CDS |
| TCAAACCACTGATCAACCAT+GGG | 0.645985 | 2_1:-666257 | Msa0186020:CDS |
| GTAACATCAATGGGACTAGG+TGG | 0.681662 | 2_1:+666993 | None:intergenic |
| TGTGTTTCATCCAACAGACG+AGG | 0.716463 | 2_1:-666361 | Msa0186020:CDS |
| ACTTGTGGGAATGAGTGTTG+AGG | 0.717943 | 2_1:-666523 | Msa0186020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATATGAAGCTATGA+TGG | + | chr2_1:666462-666481 | None:intergenic | 20.0% |
| !!! | CAATAAAGGCAATTTTATTA+GGG | + | chr2_1:666580-666599 | None:intergenic | 20.0% |
| !!! | TTTTTACACCAATGATATAT+TGG | - | chr2_1:666748-666767 | Msa0186020:CDS | 20.0% |
| !! | AGAATATGAAGTTGTTTATT+TGG | - | chr2_1:666790-666809 | Msa0186020:CDS | 20.0% |
| !! | ATTATTATATGAAGCTATGA+TGG | + | chr2_1:666462-666481 | None:intergenic | 20.0% |
| !!! | CAATAAAGGCAATTTTATTA+GGG | + | chr2_1:666580-666599 | None:intergenic | 20.0% |
| !!! | TTTTTACACCAATGATATAT+TGG | - | chr2_1:666748-666767 | Msa0186020:CDS | 20.0% |
| !! | AGAATATGAAGTTGTTTATT+TGG | - | chr2_1:666790-666809 | Msa0186020:CDS | 20.0% |
| ! | AAATTAGATCCAAACTCATT+AGG | - | chr2_1:666393-666412 | Msa0186020:CDS | 25.0% |
| !!! | AAAATATTGAGTTGATTGAG+TGG | + | chr2_1:666485-666504 | None:intergenic | 25.0% |
| ! | TGAGGTAGTTTGAATAATAA+GGG | + | chr2_1:666508-666527 | None:intergenic | 25.0% |
| ! | TTGAGGTAGTTTGAATAATA+AGG | + | chr2_1:666509-666528 | None:intergenic | 25.0% |
| !! | AATTTTATTAGGGACATTAG+TGG | + | chr2_1:666570-666589 | None:intergenic | 25.0% |
| !! | CCAATAAAGGCAATTTTATT+AGG | + | chr2_1:666581-666600 | None:intergenic | 25.0% |
| ! | CCTAATAAAATTGCCTTTAT+TGG | - | chr2_1:666578-666597 | Msa0186020:CDS | 25.0% |
| !! | TGTGAAAAATTGTGTTTTGT+AGG | + | chr2_1:666649-666668 | None:intergenic | 25.0% |
| ! | TGAAACATCCAATATATCAT+TGG | + | chr2_1:666759-666778 | None:intergenic | 25.0% |
| ! | TTGTTTGGTATTAAAACCAT+CGG | + | chr2_1:667037-667056 | None:intergenic | 25.0% |
| ! | AAATTAGATCCAAACTCATT+AGG | - | chr2_1:666393-666412 | Msa0186020:CDS | 25.0% |
| !!! | AAAATATTGAGTTGATTGAG+TGG | + | chr2_1:666485-666504 | None:intergenic | 25.0% |
| ! | TGAGGTAGTTTGAATAATAA+GGG | + | chr2_1:666508-666527 | None:intergenic | 25.0% |
| ! | TTGAGGTAGTTTGAATAATA+AGG | + | chr2_1:666509-666528 | None:intergenic | 25.0% |
| !! | AATTTTATTAGGGACATTAG+TGG | + | chr2_1:666570-666589 | None:intergenic | 25.0% |
| !! | CCAATAAAGGCAATTTTATT+AGG | + | chr2_1:666581-666600 | None:intergenic | 25.0% |
| ! | CCTAATAAAATTGCCTTTAT+TGG | - | chr2_1:666578-666597 | Msa0186020:CDS | 25.0% |
| !! | TGTGAAAAATTGTGTTTTGT+AGG | + | chr2_1:666649-666668 | None:intergenic | 25.0% |
| ! | TGAAACATCCAATATATCAT+TGG | + | chr2_1:666759-666778 | None:intergenic | 25.0% |
| ! | TTGTTTGGTATTAAAACCAT+CGG | + | chr2_1:667037-667056 | None:intergenic | 25.0% |
| ! | CTAAGTTTGGTAACATCAAT+GGG | + | chr2_1:666359-666378 | None:intergenic | 30.0% |
| ! | TTGAACTTTTGTGCTAAGTT+TGG | + | chr2_1:666372-666391 | None:intergenic | 30.0% |
| TTGAGTAGTGACTTTCTAAA+TGG | + | chr2_1:666439-666458 | None:intergenic | 30.0% | |
| TGGTTAGGATATTGAATTCA+AGG | + | chr2_1:666541-666560 | None:intergenic | 30.0% | |
| ! | AACATACGCTTTGATAATTC+AGG | + | chr2_1:666728-666747 | None:intergenic | 30.0% |
| GAATAAAATCATTGAGCACT+TGG | - | chr2_1:666844-666863 | Msa0186020:CDS | 30.0% | |
| GAGTAATATGATTGAGGAAT+TGG | - | chr2_1:667105-667124 | Msa0186020:CDS | 30.0% | |
| ! | CTAAGTTTGGTAACATCAAT+GGG | + | chr2_1:666359-666378 | None:intergenic | 30.0% |
| ! | TTGAACTTTTGTGCTAAGTT+TGG | + | chr2_1:666372-666391 | None:intergenic | 30.0% |
| TTGAGTAGTGACTTTCTAAA+TGG | + | chr2_1:666439-666458 | None:intergenic | 30.0% | |
| TGGTTAGGATATTGAATTCA+AGG | + | chr2_1:666541-666560 | None:intergenic | 30.0% | |
| ! | AACATACGCTTTGATAATTC+AGG | + | chr2_1:666728-666747 | None:intergenic | 30.0% |
| GAATAAAATCATTGAGCACT+TGG | - | chr2_1:666844-666863 | Msa0186020:CDS | 30.0% | |
| GAGTAATATGATTGAGGAAT+TGG | - | chr2_1:667105-667124 | Msa0186020:CDS | 30.0% | |
| !! | AGTGTGTTGACATTTTTGCA+AGG | + | chr2_1:666299-666318 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGGTAACATCAA+TGG | + | chr2_1:666360-666379 | None:intergenic | 35.0% |
| ATTCAAGGAGACTAAGTTTG+AGG | + | chr2_1:666526-666545 | None:intergenic | 35.0% | |
| CATTAGTGGAATGTTTGGTT+AGG | + | chr2_1:666556-666575 | None:intergenic | 35.0% | |
| !! | AAAATTGCCTTTATTGGCTC+AGG | - | chr2_1:666584-666603 | Msa0186020:CDS | 35.0% |
| ! | TGTGTTTTGTAGGTGATTAG+TGG | + | chr2_1:666639-666658 | None:intergenic | 35.0% |
| !! | AAGCTTTGGAATTGGCTAAA+GGG | + | chr2_1:666685-666704 | None:intergenic | 35.0% |
| AGATCATTGGTATCAACAAC+CGG | + | chr2_1:666938-666957 | None:intergenic | 35.0% | |
| TTTGAAGGCTTGAATCTCAT+CGG | + | chr2_1:667068-667087 | None:intergenic | 35.0% | |
| !! | AGTGTGTTGACATTTTTGCA+AGG | + | chr2_1:666299-666318 | None:intergenic | 35.0% |
| ! | GCTAAGTTTGGTAACATCAA+TGG | + | chr2_1:666360-666379 | None:intergenic | 35.0% |
| ATTCAAGGAGACTAAGTTTG+AGG | + | chr2_1:666526-666545 | None:intergenic | 35.0% | |
| CATTAGTGGAATGTTTGGTT+AGG | + | chr2_1:666556-666575 | None:intergenic | 35.0% | |
| !! | AAAATTGCCTTTATTGGCTC+AGG | - | chr2_1:666584-666603 | Msa0186020:CDS | 35.0% |
| ! | TGTGTTTTGTAGGTGATTAG+TGG | + | chr2_1:666639-666658 | None:intergenic | 35.0% |
| !! | AAGCTTTGGAATTGGCTAAA+GGG | + | chr2_1:666685-666704 | None:intergenic | 35.0% |
| AGATCATTGGTATCAACAAC+CGG | + | chr2_1:666938-666957 | None:intergenic | 35.0% | |
| TTTGAAGGCTTGAATCTCAT+CGG | + | chr2_1:667068-667087 | None:intergenic | 35.0% | |
| CATGCATGTGAGAACAAGTT+TGG | + | chr2_1:666327-666346 | None:intergenic | 40.0% | |
| ! | TTGGTAACATCAATGGGACT+AGG | + | chr2_1:666353-666372 | None:intergenic | 40.0% |
| TCCAAACTCATTAGGCTATG+TGG | - | chr2_1:666401-666420 | Msa0186020:CDS | 40.0% | |
| ACCACATAGCCTAATGAGTT+TGG | + | chr2_1:666405-666424 | None:intergenic | 40.0% | |
| AGGGACATTAGTGGAATGTT+TGG | + | chr2_1:666561-666580 | None:intergenic | 40.0% | |
| ACAAGTGAAGTAAGTGGAAG+TGG | + | chr2_1:666611-666630 | None:intergenic | 40.0% | |
| GCTAAGACAAGTGAAGTAAG+TGG | + | chr2_1:666617-666636 | None:intergenic | 40.0% | |
| !! | GAAGCTTTGGAATTGGCTAA+AGG | + | chr2_1:666686-666705 | None:intergenic | 40.0% |
| !! | CAAGCAAGAAGCTTTGGAAT+TGG | + | chr2_1:666693-666712 | None:intergenic | 40.0% |
| CAATTCCAAAGCTTCTTGCT+TGG | - | chr2_1:666691-666710 | Msa0186020:CDS | 40.0% | |
| TGAAACCAAGCAAGAAGCTT+TGG | + | chr2_1:666699-666718 | None:intergenic | 40.0% | |
| TGTTTATTTGGCAGCACTTG+TGG | - | chr2_1:666802-666821 | Msa0186020:CDS | 40.0% | |
| GTTTATTTGGCAGCACTTGT+GGG | - | chr2_1:666803-666822 | Msa0186020:CDS | 40.0% | |
| GTTGATACCAATGATCTTCG+AGG | - | chr2_1:666941-666960 | Msa0186020:CDS | 40.0% | |
| ! | GAATTGATAACCTCGTCTGT+TGG | + | chr2_1:666992-667011 | None:intergenic | 40.0% |
| TCATCGGAACGACATTTGTT+TGG | + | chr2_1:667052-667071 | None:intergenic | 40.0% | |
| ATGGTTGATCAGTGGTTTGA+AGG | + | chr2_1:667083-667102 | None:intergenic | 40.0% | |
| TTCAAACCACTGATCAACCA+TGG | - | chr2_1:667082-667101 | Msa0186020:CDS | 40.0% | |
| TCAAACCACTGATCAACCAT+GGG | - | chr2_1:667083-667102 | Msa0186020:CDS | 40.0% | |
| CCTCAATCATATTACTCCCA+TGG | + | chr2_1:667102-667121 | None:intergenic | 40.0% | |
| CCATGGGAGTAATATGATTG+AGG | - | chr2_1:667099-667118 | Msa0186020:CDS | 40.0% | |
| CATGCATGTGAGAACAAGTT+TGG | + | chr2_1:666327-666346 | None:intergenic | 40.0% | |
| ! | TTGGTAACATCAATGGGACT+AGG | + | chr2_1:666353-666372 | None:intergenic | 40.0% |
| TCCAAACTCATTAGGCTATG+TGG | - | chr2_1:666401-666420 | Msa0186020:CDS | 40.0% | |
| ACCACATAGCCTAATGAGTT+TGG | + | chr2_1:666405-666424 | None:intergenic | 40.0% | |
| AGGGACATTAGTGGAATGTT+TGG | + | chr2_1:666561-666580 | None:intergenic | 40.0% | |
| ACAAGTGAAGTAAGTGGAAG+TGG | + | chr2_1:666611-666630 | None:intergenic | 40.0% | |
| GCTAAGACAAGTGAAGTAAG+TGG | + | chr2_1:666617-666636 | None:intergenic | 40.0% | |
| !! | GAAGCTTTGGAATTGGCTAA+AGG | + | chr2_1:666686-666705 | None:intergenic | 40.0% |
| !! | CAAGCAAGAAGCTTTGGAAT+TGG | + | chr2_1:666693-666712 | None:intergenic | 40.0% |
| CAATTCCAAAGCTTCTTGCT+TGG | - | chr2_1:666691-666710 | Msa0186020:CDS | 40.0% | |
| TGAAACCAAGCAAGAAGCTT+TGG | + | chr2_1:666699-666718 | None:intergenic | 40.0% | |
| TGTTTATTTGGCAGCACTTG+TGG | - | chr2_1:666802-666821 | Msa0186020:CDS | 40.0% | |
| GTTTATTTGGCAGCACTTGT+GGG | - | chr2_1:666803-666822 | Msa0186020:CDS | 40.0% | |
| GTTGATACCAATGATCTTCG+AGG | - | chr2_1:666941-666960 | Msa0186020:CDS | 40.0% | |
| ! | GAATTGATAACCTCGTCTGT+TGG | + | chr2_1:666992-667011 | None:intergenic | 40.0% |
| TCATCGGAACGACATTTGTT+TGG | + | chr2_1:667052-667071 | None:intergenic | 40.0% | |
| ATGGTTGATCAGTGGTTTGA+AGG | + | chr2_1:667083-667102 | None:intergenic | 40.0% | |
| TTCAAACCACTGATCAACCA+TGG | - | chr2_1:667082-667101 | Msa0186020:CDS | 40.0% | |
| TCAAACCACTGATCAACCAT+GGG | - | chr2_1:667083-667102 | Msa0186020:CDS | 40.0% | |
| CCTCAATCATATTACTCCCA+TGG | + | chr2_1:667102-667121 | None:intergenic | 40.0% | |
| CCATGGGAGTAATATGATTG+AGG | - | chr2_1:667099-667118 | Msa0186020:CDS | 40.0% | |
| GTAACATCAATGGGACTAGG+TGG | + | chr2_1:666350-666369 | None:intergenic | 45.0% | |
| AAGTGGACCTGAGCCAATAA+AGG | + | chr2_1:666594-666613 | None:intergenic | 45.0% | |
| ! | ACTTGTGGGAATGAGTGTTG+AGG | - | chr2_1:666817-666836 | Msa0186020:CDS | 45.0% |
| TGAGCACTTGGCTAAGTACA+TGG | - | chr2_1:666856-666875 | Msa0186020:CDS | 45.0% | |
| ! | TGCTCGTGCTTTTCTGTATC+CGG | - | chr2_1:666916-666935 | Msa0186020:CDS | 45.0% |
| CTCAAAGCCTCGAAGATCAT+TGG | + | chr2_1:666951-666970 | None:intergenic | 45.0% | |
| CAATGATCTTCGAGGCTTTG+AGG | - | chr2_1:666949-666968 | Msa0186020:CDS | 45.0% | |
| TGTGTTTCATCCAACAGACG+AGG | - | chr2_1:666979-666998 | Msa0186020:CDS | 45.0% | |
| TTACTCCCATGGTTGATCAG+TGG | + | chr2_1:667091-667110 | None:intergenic | 45.0% | |
| GTAACATCAATGGGACTAGG+TGG | + | chr2_1:666350-666369 | None:intergenic | 45.0% | |
| AAGTGGACCTGAGCCAATAA+AGG | + | chr2_1:666594-666613 | None:intergenic | 45.0% | |
| ! | ACTTGTGGGAATGAGTGTTG+AGG | - | chr2_1:666817-666836 | Msa0186020:CDS | 45.0% |
| TGAGCACTTGGCTAAGTACA+TGG | - | chr2_1:666856-666875 | Msa0186020:CDS | 45.0% | |
| ! | TGCTCGTGCTTTTCTGTATC+CGG | - | chr2_1:666916-666935 | Msa0186020:CDS | 45.0% |
| CTCAAAGCCTCGAAGATCAT+TGG | + | chr2_1:666951-666970 | None:intergenic | 45.0% | |
| CAATGATCTTCGAGGCTTTG+AGG | - | chr2_1:666949-666968 | Msa0186020:CDS | 45.0% | |
| TGTGTTTCATCCAACAGACG+AGG | - | chr2_1:666979-666998 | Msa0186020:CDS | 45.0% | |
| TTACTCCCATGGTTGATCAG+TGG | + | chr2_1:667091-667110 | None:intergenic | 45.0% | |
| AGGCTATGTGGTGAAGCTGA+AGG | - | chr2_1:666413-666432 | Msa0186020:CDS | 50.0% | |
| CTTGGCTAAGTACATGGCAC+CGG | - | chr2_1:666862-666881 | Msa0186020:CDS | 50.0% | |
| TTGGCTAAGTACATGGCACC+GGG | - | chr2_1:666863-666882 | Msa0186020:CDS | 50.0% | |
| AGGCTATGTGGTGAAGCTGA+AGG | - | chr2_1:666413-666432 | Msa0186020:CDS | 50.0% | |
| CTTGGCTAAGTACATGGCAC+CGG | - | chr2_1:666862-666881 | Msa0186020:CDS | 50.0% | |
| TTGGCTAAGTACATGGCACC+GGG | - | chr2_1:666863-666882 | Msa0186020:CDS | 50.0% | |
| !! | CTGAGCATGAGAAGTGCTCC+CGG | + | chr2_1:666884-666903 | None:intergenic | 55.0% |
| !! | CTCATGCTCAGGAGTGCTCA+CGG | - | chr2_1:666893-666912 | Msa0186020:CDS | 55.0% |
| CATAGCGCGCAAGTATCCGA+TGG | - | chr2_1:667018-667037 | Msa0186020:CDS | 55.0% | |
| !! | CTGAGCATGAGAAGTGCTCC+CGG | + | chr2_1:666884-666903 | None:intergenic | 55.0% |
| !! | CTCATGCTCAGGAGTGCTCA+CGG | - | chr2_1:666893-666912 | Msa0186020:CDS | 55.0% |
| CATAGCGCGCAAGTATCCGA+TGG | - | chr2_1:667018-667037 | Msa0186020:CDS | 55.0% | |
| !! | CGGGAGCACTTCTCATGCTC+AGG | - | chr2_1:666882-666901 | Msa0186020:CDS | 60.0% |
| !! | CGGGAGCACTTCTCATGCTC+AGG | - | chr2_1:666882-666901 | Msa0186020:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 666218 | 667144 | 666218 | ID=Msa0186020;Name=Msa0186020 |
| chr2_1 | mRNA | 666218 | 667144 | 666218 | ID=Msa0186020-mRNA-1;Parent=Msa0186020;Name=Msa0186020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|308 |
| chr2_1 | exon | 666218 | 667144 | 666218 | ID=Msa0186020-mRNA-1:exon:154;Parent=Msa0186020-mRNA-1 |
| chr2_1 | CDS | 666218 | 667144 | 666218 | ID=Msa0186020-mRNA-1:cds;Parent=Msa0186020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
