AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087840 MtrunA17_Chr2g0281851 97.568 329 7 1 1 329 27 354 0.0 660
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087840 AT4G04930.1 81.682 333 56 2 1 329 1 332 0.0 567

Find 102 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCTCAATGGTTTATTTC+TGG 0.042011 7_3:-618091 Msa1087840:CDS
AACCGAAACCTCCAGGTATT+TGG 0.110935 7_3:-618148 Msa1087840:CDS
TAAACAAATGGCTTGCTATC+TGG 0.171894 7_3:+617613 None:intergenic
ACATGATCATGGTCAGTTTA+AGG 0.208576 7_3:-617405 Msa1087840:three_prime_UTR
GGTTATTTACATGTATATTA+TGG 0.220265 7_3:-617796 Msa1087840:CDS
TTGTTTAATTTGAGGGTATT+TGG 0.221781 7_3:+619752 None:intergenic
TTTCTCTTCATTCTGCTATA+AGG 0.250507 7_3:+617759 None:intergenic
CCTCAACCACAATCTCTTCT+TGG 0.268270 7_3:-618438 Msa1087840:CDS
ACAATGGTGATGAATGTTAT+TGG 0.292521 7_3:-617580 Msa1087840:three_prime_UTR
TGTCTCAATGGTTTATTTCT+GGG 0.295906 7_3:-618090 Msa1087840:CDS
TGATGGCTGGTGATTTCTTT+TGG 0.300981 7_3:-619821 Msa1087840:CDS
ACTTTCTTTGTTGAAATGTT+TGG 0.306805 7_3:+617529 None:intergenic
AGGCGTCGATGGCGTTGATA+TGG 0.307309 7_3:-618276 Msa1087840:CDS
ACCTTGTGAAGTTTGTTTCC+AGG 0.308162 7_3:+617876 None:intergenic
TCCCAAATACCTGGAGGTTT+CGG 0.315484 7_3:+618146 None:intergenic
TAAGAATATGTCTCTTGTTC+AGG 0.318858 7_3:+617969 None:intergenic
ACCGAAACCTCCAGGTATTT+GGG 0.325860 7_3:-618147 Msa1087840:CDS
CCTCAAATTAAACAACTCTT+TGG 0.348261 7_3:-619744 Msa1087840:CDS
AGTTTGTTTCCAGGAATTCT+TGG 0.349785 7_3:+617885 None:intergenic
AAACAAATGGCTTGCTATCT+GGG 0.353317 7_3:+617614 None:intergenic
GGTAAAGGCGGAGGAGGAGG+AGG 0.367528 7_3:-619864 Msa1087840:CDS
CTCATACTAGCCACATTTGT+TGG 0.367569 7_3:-618047 Msa1087840:CDS
ATGTTCTTGCGAAAACCATT+TGG 0.369501 7_3:-618217 Msa1087840:CDS
CAGGAATTCTTGGAAAATCA+TGG 0.376419 7_3:+617895 None:intergenic
GGTGCTCCAAGTGATACTTT+TGG 0.379124 7_3:+618309 None:intergenic
TGATCCCTTCGCATTCTTCA+AGG 0.379772 7_3:-619718 Msa1087840:intron
GACAAACTATCATAATATTC+TGG 0.380490 7_3:+617840 None:intergenic
AGTTTATAAAGAATATTCAT+AGG 0.384167 7_3:+617691 None:intergenic
ATGGGTAAAGGCGGAGGAGG+AGG 0.384192 7_3:-619867 Msa1087840:CDS
TTGAAGAATGCGAAGGGATC+AGG 0.397880 7_3:+619720 None:intergenic
TGTTCTTGCGAAAACCATTT+GGG 0.401291 7_3:-618216 Msa1087840:CDS
CAATGGTTTATTTCTGGGGT+TGG 0.403013 7_3:-618085 Msa1087840:CDS
CTGTCTACAACCGTTGGCTT+GGG 0.405458 7_3:-618376 Msa1087840:CDS
TCAGTTTAAGGTTGAAGAAA+TGG 0.411609 7_3:-617393 Msa1087840:three_prime_UTR
CAAAGAGTTGTTTAATTTGA+GGG 0.413350 7_3:+619745 None:intergenic
CCAAAGAGTTGTTTAATTTG+AGG 0.414984 7_3:+619744 None:intergenic
CAGACATAGGTACGCCTATA+GGG 0.434208 7_3:+618339 None:intergenic
AATGTTTGGACACATATTGA+TGG 0.435853 7_3:+617543 None:intergenic
CATTATTTGTCACTAGATAG+TGG 0.442233 7_3:-617309 Msa1087840:three_prime_UTR
AAAATGGGTAAAGGCGGAGG+AGG 0.447267 7_3:-619870 Msa1087840:CDS
CCTGTCTACAACCGTTGGCT+TGG 0.454505 7_3:-618377 Msa1087840:CDS
CCAAGAAGAGATTGTGGTTG+AGG 0.459624 7_3:+618438 None:intergenic
TATCAACGCCATCGACGCCT+TGG 0.464202 7_3:+618279 None:intergenic
ACTACAGTCAACATGCGTTC+CGG 0.466049 7_3:-617464 Msa1087840:three_prime_UTR
ACAGACATAGGTACGCCTAT+AGG 0.470286 7_3:+618338 None:intergenic
GATTGCCCTTGATGTCTCAA+TGG 0.470604 7_3:-618102 Msa1087840:CDS
AATAAACCATTGAGACATCA+AGG 0.477537 7_3:+618096 None:intergenic
GTTTATAAAGAATATTCATA+GGG 0.479471 7_3:+617692 None:intergenic
CATCGCTTCCAAGGCGTCGA+TGG 0.485169 7_3:-618287 Msa1087840:CDS
GTAATAAGCTAATAAACAAA+TGG 0.485651 7_3:+617601 None:intergenic
CAAGATTGTGACTGAGCTCA+TGG 0.487021 7_3:+618411 None:intergenic
GACATGTGCTTCCATGTGAC+TGG 0.492679 7_3:+618247 None:intergenic
ACACTATAAATCATGGAGTC+AGG 0.494471 7_3:-617817 Msa1087840:CDS
TTTCTTAAACCGAAACCTCC+AGG 0.504284 7_3:-618155 Msa1087840:CDS
GTCTCAATGGTTTATTTCTG+GGG 0.504698 7_3:-618089 Msa1087840:CDS
CCAAGCCAACGGTTGTAGAC+AGG 0.507037 7_3:+618377 None:intergenic
GATTAGCAGATTACTAGTAA+TGG 0.512849 7_3:-617433 Msa1087840:three_prime_UTR
GTTTGTCACACTATAAATCA+TGG 0.516695 7_3:-617824 Msa1087840:CDS
GGAGGAGGAGAAGATGAAGA+AGG 0.517452 7_3:-619849 Msa1087840:CDS
CAACTCCTGTCTACAACCGT+TGG 0.519760 7_3:-618382 Msa1087840:CDS
AATCTTCTCACATGGCATGT+AGG 0.525317 7_3:-617933 Msa1087840:CDS
TTGGAGCACCATCGCTTCCA+AGG 0.530014 7_3:-618296 Msa1087840:CDS
AACCTTCCAAAAGTATCACT+TGG 0.535024 7_3:-618315 Msa1087840:CDS
ATACTAGCCACATTTGTTGG+TGG 0.545798 7_3:-618044 Msa1087840:CDS
CTAGCCACATTTGTTGGTGG+AGG 0.551745 7_3:-618041 Msa1087840:CDS
AGATGAAGAAGGTGTAATGA+TGG 0.551961 7_3:-619838 Msa1087840:CDS
AACTAGAGAATGTACATGAT+TGG 0.552599 7_3:-617496 Msa1087840:three_prime_UTR
TATATTATGGACAAAACAGT+TGG 0.553526 7_3:-617783 Msa1087840:CDS
TGTTTATTAGCTTATTACAA+TGG 0.556839 7_3:-617596 Msa1087840:three_prime_UTR
CAAGAGACATATTCTTACTA+CGG 0.561519 7_3:-617963 Msa1087840:CDS
GGCTAGTATGAGATAAGCTA+AGG 0.565655 7_3:+618058 None:intergenic
TAATTTGAGGGTATTTGGAG+AGG 0.567285 7_3:+619757 None:intergenic
TTGATGAATTCCCAAATACC+TGG 0.573711 7_3:+618137 None:intergenic
GAAATGAAGTGACCAGCCAT+TGG 0.573733 7_3:+618011 None:intergenic
GGAGGAATGCATCCAATGGC+TGG 0.575417 7_3:-618023 Msa1087840:CDS
TAATGGACAGAACATGATCA+TGG 0.577168 7_3:-617416 Msa1087840:three_prime_UTR
GAAGAAGGTGTAATGATGGC+TGG 0.581573 7_3:-619834 Msa1087840:CDS
CATCGACGCCTTGGAAGCGA+TGG 0.586947 7_3:+618288 None:intergenic
ATCTGCTAATCTTTCCACTC+CGG 0.594440 7_3:+617445 None:intergenic
GACCTTTGAATCTTCTCACA+TGG 0.598138 7_3:-617941 Msa1087840:CDS
GCGAGAAGCATGAGGTTCAT+CGG 0.598370 7_3:+619791 None:intergenic
TGCCATGTGAGAAGATTCAA+AGG 0.605214 7_3:+617939 None:intergenic
CATTCCTCCACCAACAAATG+TGG 0.605926 7_3:+618037 None:intergenic
ACATGTGCTTCCATGTGACT+GGG 0.609728 7_3:+618248 None:intergenic
GTTTGGACACATATTGATGG+AGG 0.617544 7_3:+617546 None:intergenic
TATGGATATCCCCAGTCACA+TGG 0.618891 7_3:-618258 Msa1087840:CDS
CTCACCTTGAAGAATGCGAA+GGG 0.618939 7_3:+619714 None:intergenic
TCCTGGAAACAAACTTCACA+AGG 0.620833 7_3:-617877 Msa1087840:CDS
AGTCAACATGCGTTCCGGAG+TGG 0.622695 7_3:-617459 Msa1087840:three_prime_UTR
GAAAATCATGGTGTTCATTG+TGG 0.623404 7_3:+617907 None:intergenic
ACTCACCTTGAAGAATGCGA+AGG 0.629782 7_3:+619713 None:intergenic
GGATAGCCAAGAAGAGATTG+TGG 0.634306 7_3:+618432 None:intergenic
ATAAACCATTGAGACATCAA+GGG 0.649348 7_3:+618097 None:intergenic
AAACAAACTTCACAAGGTGA+AGG 0.651727 7_3:-617871 Msa1087840:CDS
TTTATAAAGAATATTCATAG+GGG 0.654681 7_3:+617693 None:intergenic
TAGCGAAAATCCCAAGCCAA+CGG 0.655542 7_3:+618366 None:intergenic
TGACGACGGCGAGAAGCATG+AGG 0.663294 7_3:+619783 None:intergenic
ATGAATTCCCAAATACCTGG+AGG 0.666515 7_3:+618140 None:intergenic
TGGTGGAGGAATGCATCCAA+TGG 0.675962 7_3:-618027 Msa1087840:CDS
GGTTTCGGTTTAAGAAACAA+CGG 0.699596 7_3:+618161 None:intergenic
CATGTGCTTCCATGTGACTG+GGG 0.710334 7_3:+618249 None:intergenic
ATTTGGAGAGGATCTGACGA+CGG 0.745086 7_3:+619769 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATGTATTAAAAAGA+TGG - chr7_3:619802-619821 Msa1087840:CDS 10.0%
!!! AAATTGATTTTGATATGTTT+GGG + chr7_3:618319-618338 None:intergenic 15.0%
!!! AAAATTGATTTTGATATGTT+TGG + chr7_3:618320-618339 None:intergenic 15.0%
!! TTTATAAAGAATATTCATAG+GGG + chr7_3:619345-619364 None:intergenic 15.0%
!! GTTTATAAAGAATATTCATA+GGG + chr7_3:619346-619365 None:intergenic 15.0%
!! AGTTTATAAAGAATATTCAT+AGG + chr7_3:619347-619366 None:intergenic 15.0%
!!! TCTTGAATTTCATTTTAATT+AGG - chr7_3:619758-619777 Msa1087840:CDS 15.0%
!! TATCAAACATGTACTAAAAA+CGG + chr7_3:617388-617407 None:intergenic 20.0%
!! AGAATCATATATTAGAATCA+CGG - chr7_3:617424-617443 Msa1087840:three_prime_UTR 20.0%
!!! ATGGTTTTTAGGAAAAATAT+TGG - chr7_3:617523-617542 Msa1087840:three_prime_UTR 20.0%
!!! TTTTTAGGAAAAATATTGGT+GGG - chr7_3:617527-617546 Msa1087840:three_prime_UTR 20.0%
!!! TTTTAGTTTAAAGTGAGTTT+AGG - chr7_3:617934-617953 Msa1087840:CDS 20.0%
!!! TTTAGTTTAAAGTGAGTTTA+GGG - chr7_3:617935-617954 Msa1087840:CDS 20.0%
!! AAGTATGTTGAACAATAATT+TGG - chr7_3:618208-618227 Msa1087840:CDS 20.0%
!! AGTATGTTGAACAATAATTT+GGG - chr7_3:618209-618228 Msa1087840:CDS 20.0%
!! AATAATTTGGGTGTAAAATT+TGG - chr7_3:618221-618240 Msa1087840:CDS 20.0%
!! TAGTGTAGATTATATTAGTT+TGG - chr7_3:618366-618385 Msa1087840:CDS 20.0%
!!! AGTGTAGATTATATTAGTTT+GGG - chr7_3:618367-618386 Msa1087840:CDS 20.0%
!! GGTTATTTACATGTATATTA+TGG - chr7_3:619239-619258 Msa1087840:intron 20.0%
!! GTAATAAGCTAATAAACAAA+TGG + chr7_3:619437-619456 None:intergenic 20.0%
!!! TGTTTATTAGCTTATTACAA+TGG - chr7_3:619439-619458 Msa1087840:intron 20.0%
!!! TTGTTTAATTTGAGGGTATT+TGG + chr7_3:617286-617305 None:intergenic 25.0%
!!! CAAAGAGTTGTTTAATTTGA+GGG + chr7_3:617293-617312 None:intergenic 25.0%
! TTAGTACATGTTTGATATCA+TGG - chr7_3:617391-617410 Msa1087840:three_prime_UTR 25.0%
!!! GTTTTTAGGAAAAATATTGG+TGG - chr7_3:617526-617545 Msa1087840:three_prime_UTR 25.0%
! AGTAAGTAACAACTTTGAAT+TGG - chr7_3:617835-617854 Msa1087840:CDS 25.0%
! AACAATTGAGAAAATTCCAA+TGG + chr7_3:617973-617992 None:intergenic 25.0%
!! GATTATATTAGTTTGGGATA+TGG - chr7_3:618373-618392 Msa1087840:CDS 25.0%
!! GTATTTTATGTGAATGTGTA+TGG - chr7_3:618405-618424 Msa1087840:CDS 25.0%
!! TTTTAGATCTGTATTAGATC+TGG - chr7_3:618443-618462 Msa1087840:CDS 25.0%
!!! TGTTACTGCTATTTTACTTA+AGG - chr7_3:618525-618544 Msa1087840:CDS 25.0%
! GACAAACTATCATAATATTC+TGG + chr7_3:619198-619217 None:intergenic 25.0%
! TATATTATGGACAAAACAGT+TGG - chr7_3:619252-619271 Msa1087840:intron 25.0%
! ACTTTCTTTGTTGAAATGTT+TGG + chr7_3:619509-619528 None:intergenic 25.0%
!! CCAAAGAGTTGTTTAATTTG+AGG + chr7_3:617294-617313 None:intergenic 30.0%
CCTCAAATTAAACAACTCTT+TGG - chr7_3:617291-617310 Msa1087840:three_prime_UTR 30.0%
AGTAACATTAGAGATCTAGA+TGG + chr7_3:617357-617376 None:intergenic 30.0%
CTAAAAACCATTGTTACACA+TGG + chr7_3:617514-617533 None:intergenic 30.0%
! CATGTGTAACAATGGTTTTT+AGG - chr7_3:617512-617531 Msa1087840:three_prime_UTR 30.0%
TAAAGATGTGAGATAACTTG+TGG - chr7_3:617720-617739 Msa1087840:three_prime_UTR 30.0%
! AAAGATGTGAGATAACTTGT+GGG - chr7_3:617721-617740 Msa1087840:exon 30.0%
TAAATCTGATGTGAGATTGT+AGG - chr7_3:617802-617821 Msa1087840:CDS 30.0%
AAATCTGATGTGAGATTGTA+GGG - chr7_3:617803-617822 Msa1087840:CDS 30.0%
! TTTTTCTCTCTCATGTTTGA+TGG - chr7_3:618021-618040 Msa1087840:CDS 30.0%
ATGTTGTATAAGATTTGCAG+TGG - chr7_3:618127-618146 Msa1087840:CDS 30.0%
ATGTGAATGTGTATGGTTTA+TGG - chr7_3:618412-618431 Msa1087840:CDS 30.0%
! CTATTTTACTTAAGGATGCA+GGG - chr7_3:618533-618552 Msa1087840:CDS 30.0%
!!! CTTCTAGTAGCCTATTTTTT+TGG - chr7_3:618568-618587 Msa1087840:intron 30.0%
ATAAACCATTGAGACATCAA+GGG + chr7_3:618941-618960 None:intergenic 30.0%
AATAAACCATTGAGACATCA+AGG + chr7_3:618942-618961 None:intergenic 30.0%
ATGTCTCAATGGTTTATTTC+TGG - chr7_3:618944-618963 Msa1087840:intron 30.0%
! TGTCTCAATGGTTTATTTCT+GGG - chr7_3:618945-618964 Msa1087840:intron 30.0%
TAAGAATATGTCTCTTGTTC+AGG + chr7_3:619069-619088 None:intergenic 30.0%
CAAGAGACATATTCTTACTA+CGG - chr7_3:619072-619091 Msa1087840:intron 30.0%
GTTTGTCACACTATAAATCA+TGG - chr7_3:619211-619230 Msa1087840:intron 30.0%
TTTCTCTTCATTCTGCTATA+AGG + chr7_3:619279-619298 None:intergenic 30.0%
! TCTATTCATTCAGTTTTGCT+TGG + chr7_3:619303-619322 None:intergenic 30.0%
! ACAATGGTGATGAATGTTAT+TGG - chr7_3:619455-619474 Msa1087840:intron 30.0%
AATGTTTGGACACATATTGA+TGG + chr7_3:619495-619514 None:intergenic 30.0%
AACTAGAGAATGTACATGAT+TGG - chr7_3:619539-619558 Msa1087840:intron 30.0%
GATTAGCAGATTACTAGTAA+TGG - chr7_3:619602-619621 Msa1087840:intron 30.0%
! TCAGTTTAAGGTTGAAGAAA+TGG - chr7_3:619642-619661 Msa1087840:intron 30.0%
CATTATTTGTCACTAGATAG+TGG - chr7_3:619726-619745 Msa1087840:CDS 30.0%
! AGATGAAGAAGGTGTAATGA+TGG - chr7_3:617197-617216 Msa1087840:three_prime_UTR 35.0%
!! TAATTTGAGGGTATTTGGAG+AGG + chr7_3:617281-617300 None:intergenic 35.0%
GATATGTTGCTGACATAGAT+AGG - chr7_3:617605-617624 Msa1087840:three_prime_UTR 35.0%
ACACCATTTGTGTGAAAAGT+TGG - chr7_3:617770-617789 Msa1087840:CDS 35.0%
! TCACCAACTTTTCACACAAA+TGG + chr7_3:617776-617795 None:intergenic 35.0%
! AAGTTGTTACTTACTTCTCG+TGG + chr7_3:617830-617849 None:intergenic 35.0%
AAAAGAGGAGATTGAGTTTG+TGG + chr7_3:618005-618024 None:intergenic 35.0%
CAAACATGAGAGAGAAAAAG+AGG + chr7_3:618020-618039 None:intergenic 35.0%
TCCAATGTTGACAATTCCAA+TGG - chr7_3:618157-618176 Msa1087840:CDS 35.0%
CAAGCTGAAATCAATTCTAG+AGG - chr7_3:618269-618288 Msa1087840:CDS 35.0%
ATCTACACTAGTGACAAGTT+TGG + chr7_3:618356-618375 None:intergenic 35.0%
!! GCTATTTTACTTAAGGATGC+AGG - chr7_3:618532-618551 Msa1087840:CDS 35.0%
GAGGAATGAGCCAAAAAAAT+AGG + chr7_3:618581-618600 None:intergenic 35.0%
! ATTTTCGCTAATCTCCCTAT+AGG - chr7_3:618682-618701 Msa1087840:intron 35.0%
!! TTTTGGAAGGTTACAGACAT+AGG + chr7_3:618712-618731 None:intergenic 35.0%
!! AACCTTCCAAAAGTATCACT+TGG - chr7_3:618720-618739 Msa1087840:intron 35.0%
ATGTTCTTGCGAAAACCATT+TGG - chr7_3:618818-618837 Msa1087840:intron 35.0%
TGTTCTTGCGAAAACCATTT+GGG - chr7_3:618819-618838 Msa1087840:intron 35.0%
TAGCTGTAAAAAGACCCAAA+TGG + chr7_3:618836-618855 None:intergenic 35.0%
GGTTTCGGTTTAAGAAACAA+CGG + chr7_3:618877-618896 None:intergenic 35.0%
TTGATGAATTCCCAAATACC+TGG + chr7_3:618901-618920 None:intergenic 35.0%
!! GTCTCAATGGTTTATTTCTG+GGG - chr7_3:618946-618965 Msa1087840:intron 35.0%
GAAAATCATGGTGTTCATTG+TGG + chr7_3:619131-619150 None:intergenic 35.0%
CAGGAATTCTTGGAAAATCA+TGG + chr7_3:619143-619162 None:intergenic 35.0%
! CATGATTTTCCAAGAATTCC+TGG - chr7_3:619141-619160 Msa1087840:intron 35.0%
! AGTTTGTTTCCAGGAATTCT+TGG + chr7_3:619153-619172 None:intergenic 35.0%
AAACAAACTTCACAAGGTGA+AGG - chr7_3:619164-619183 Msa1087840:intron 35.0%
ACACTATAAATCATGGAGTC+AGG - chr7_3:619218-619237 Msa1087840:intron 35.0%
!! AAACAAATGGCTTGCTATCT+GGG + chr7_3:619424-619443 None:intergenic 35.0%
!! TAAACAAATGGCTTGCTATC+TGG + chr7_3:619425-619444 None:intergenic 35.0%
! TAATGGACAGAACATGATCA+TGG - chr7_3:619619-619638 Msa1087840:intron 35.0%
ACATGATCATGGTCAGTTTA+AGG - chr7_3:619630-619649 Msa1087840:intron 35.0%
! TGATGGCTGGTGATTTCTTT+TGG - chr7_3:617214-617233 Msa1087840:three_prime_UTR 40.0%
ATTGTTACACATGGCATTCG+GGG + chr7_3:617505-617524 None:intergenic 40.0%
CATTGTTACACATGGCATTC+GGG + chr7_3:617506-617525 None:intergenic 40.0%
CCATTGTTACACATGGCATT+CGG + chr7_3:617507-617526 None:intergenic 40.0%
!! TCAAGGTGTCAAAGGGTTTT+GGG + chr7_3:617554-617573 None:intergenic 40.0%
GGGGTCATCTCTAAATCTAA+TGG + chr7_3:617866-617885 None:intergenic 40.0%
ATAGAACCAATGACACACTG+GGG + chr7_3:617885-617904 None:intergenic 40.0%
CATAGAACCAATGACACACT+GGG + chr7_3:617886-617905 None:intergenic 40.0%
TCATAGAACCAATGACACAC+TGG + chr7_3:617887-617906 None:intergenic 40.0%
! AGGGAATTGATTCTCTCCAT+TGG - chr7_3:617954-617973 Msa1087840:CDS 40.0%
AATCCATTTCCGTGAGCTTA+AGG - chr7_3:618093-618112 Msa1087840:CDS 40.0%
TTACCTTAAGCTCACGGAAA+TGG + chr7_3:618099-618118 None:intergenic 40.0%
AGCATGTTACCTTAAGCTCA+CGG + chr7_3:618105-618124 None:intergenic 40.0%
GCCATTGGAATTGTCAACAT+TGG + chr7_3:618161-618180 None:intergenic 40.0%
AAGCTGCAAATCTTAGCCAT+TGG + chr7_3:618176-618195 None:intergenic 40.0%
! TTTTACTTAAGGATGCAGGG+TGG - chr7_3:618536-618555 Msa1087840:CDS 40.0%
! CTCCAAGTGATACTTTTGGA+AGG + chr7_3:618725-618744 None:intergenic 40.0%
TTTCTTAAACCGAAACCTCC+AGG - chr7_3:618880-618899 Msa1087840:intron 40.0%
ATGAATTCCCAAATACCTGG+AGG + chr7_3:618898-618917 None:intergenic 40.0%
!! CAATGGTTTATTTCTGGGGT+TGG - chr7_3:618950-618969 Msa1087840:intron 40.0%
GGCTAGTATGAGATAAGCTA+AGG + chr7_3:618980-618999 None:intergenic 40.0%
CTCATACTAGCCACATTTGT+TGG - chr7_3:618988-619007 Msa1087840:intron 40.0%
! ATACTAGCCACATTTGTTGG+TGG - chr7_3:618991-619010 Msa1087840:intron 40.0%
GACCTTTGAATCTTCTCACA+TGG - chr7_3:619094-619113 Msa1087840:intron 40.0%
TGCCATGTGAGAAGATTCAA+AGG + chr7_3:619099-619118 None:intergenic 40.0%
AATCTTCTCACATGGCATGT+AGG - chr7_3:619102-619121 Msa1087840:intron 40.0%
TCCTGGAAACAAACTTCACA+AGG - chr7_3:619158-619177 Msa1087840:intron 40.0%
! ACCTTGTGAAGTTTGTTTCC+AGG + chr7_3:619162-619181 None:intergenic 40.0%
GTTTGGACACATATTGATGG+AGG + chr7_3:619492-619511 None:intergenic 40.0%
ATCTGCTAATCTTTCCACTC+CGG + chr7_3:619593-619612 None:intergenic 40.0%
! GAAGAAGGTGTAATGATGGC+TGG - chr7_3:617201-617220 Msa1087840:three_prime_UTR 45.0%
ATTTGGAGAGGATCTGACGA+CGG + chr7_3:617269-617288 None:intergenic 45.0%
TTGAAGAATGCGAAGGGATC+AGG + chr7_3:617318-617337 None:intergenic 45.0%
TGATCCCTTCGCATTCTTCA+AGG - chr7_3:617317-617336 Msa1087840:three_prime_UTR 45.0%
CTCACCTTGAAGAATGCGAA+GGG + chr7_3:617324-617343 None:intergenic 45.0%
ACTCACCTTGAAGAATGCGA+AGG + chr7_3:617325-617344 None:intergenic 45.0%
CACATGTTTGGTACCACGAT+GGG + chr7_3:617474-617493 None:intergenic 45.0%
CCGAATGCCATGTGTAACAA+TGG - chr7_3:617504-617523 Msa1087840:three_prime_UTR 45.0%
!! CAAGGTGTCAAAGGGTTTTG+GGG + chr7_3:617553-617572 None:intergenic 45.0%
!! CTCAAGGTGTCAAAGGGTTT+TGG + chr7_3:617555-617574 None:intergenic 45.0%
! CTCTCTCTCAAGGTGTCAAA+GGG + chr7_3:617561-617580 None:intergenic 45.0%
! TCTCTCTCTCAAGGTGTCAA+AGG + chr7_3:617562-617581 None:intergenic 45.0%
!! CGGAAATGGATTGTCAACGT+TGG + chr7_3:618085-618104 None:intergenic 45.0%
CCAAGAAGAGATTGTGGTTG+AGG + chr7_3:618600-618619 None:intergenic 45.0%
CCTCAACCACAATCTCTTCT+TGG - chr7_3:618597-618616 Msa1087840:intron 45.0%
GGATAGCCAAGAAGAGATTG+TGG + chr7_3:618606-618625 None:intergenic 45.0%
CAAGATTGTGACTGAGCTCA+TGG + chr7_3:618627-618646 None:intergenic 45.0%
TAGCGAAAATCCCAAGCCAA+CGG + chr7_3:618672-618691 None:intergenic 45.0%
CAGACATAGGTACGCCTATA+GGG + chr7_3:618699-618718 None:intergenic 45.0%
ACAGACATAGGTACGCCTAT+AGG + chr7_3:618700-618719 None:intergenic 45.0%
! GGTGCTCCAAGTGATACTTT+TGG + chr7_3:618729-618748 None:intergenic 45.0%
TATGGATATCCCCAGTCACA+TGG - chr7_3:618777-618796 Msa1087840:intron 45.0%
ACATGTGCTTCCATGTGACT+GGG + chr7_3:618790-618809 None:intergenic 45.0%
AACCGAAACCTCCAGGTATT+TGG - chr7_3:618887-618906 Msa1087840:intron 45.0%
ACCGAAACCTCCAGGTATTT+GGG - chr7_3:618888-618907 Msa1087840:intron 45.0%
TCCCAAATACCTGGAGGTTT+CGG + chr7_3:618892-618911 None:intergenic 45.0%
GATTGCCCTTGATGTCTCAA+TGG - chr7_3:618933-618952 Msa1087840:intron 45.0%
CATTCCTCCACCAACAAATG+TGG + chr7_3:619001-619020 None:intergenic 45.0%
GAAATGAAGTGACCAGCCAT+TGG + chr7_3:619027-619046 None:intergenic 45.0%
ACTACAGTCAACATGCGTTC+CGG - chr7_3:619571-619590 Msa1087840:intron 45.0%
GGAGGAGGAGAAGATGAAGA+AGG - chr7_3:617186-617205 Msa1087840:three_prime_UTR 50.0%
! GCGAGAAGCATGAGGTTCAT+CGG + chr7_3:617247-617266 None:intergenic 50.0%
TTGCAAATCACAGCCCATCG+TGG - chr7_3:617458-617477 Msa1087840:three_prime_UTR 50.0%
CCACATGTTTGGTACCACGA+TGG + chr7_3:617475-617494 None:intergenic 50.0%
CCATCGTGGTACCAAACATG+TGG - chr7_3:617472-617491 Msa1087840:three_prime_UTR 50.0%
GGGGTCAATCTCCACATGTT+TGG + chr7_3:617486-617505 None:intergenic 50.0%
ACACCTTGAGAGAGAGAGAG+AGG - chr7_3:617565-617584 Msa1087840:three_prime_UTR 50.0%
ATGCCTCTCTCTCTCTCTCA+AGG + chr7_3:617571-617590 None:intergenic 50.0%
AGATGACCCCAGTGTGTCAT+TGG - chr7_3:617876-617895 Msa1087840:CDS 50.0%
CAACTCCTGTCTACAACCGT+TGG - chr7_3:618653-618672 Msa1087840:intron 50.0%
!! CTGTCTACAACCGTTGGCTT+GGG - chr7_3:618659-618678 Msa1087840:intron 50.0%
CATGTGCTTCCATGTGACTG+GGG + chr7_3:618789-618808 None:intergenic 50.0%
GACATGTGCTTCCATGTGAC+TGG + chr7_3:618791-618810 None:intergenic 50.0%
! CTAGCCACATTTGTTGGTGG+AGG - chr7_3:618994-619013 Msa1087840:intron 50.0%
TGGTGGAGGAATGCATCCAA+TGG - chr7_3:619008-619027 Msa1087840:intron 50.0%
CCAAGCCAACGGTTGTAGAC+AGG + chr7_3:618661-618680 None:intergenic 55.0%
! CCTGTCTACAACCGTTGGCT+TGG - chr7_3:618658-618677 Msa1087840:intron 55.0%
! TTGGAGCACCATCGCTTCCA+AGG - chr7_3:618739-618758 Msa1087840:intron 55.0%
TATCAACGCCATCGACGCCT+TGG + chr7_3:618759-618778 None:intergenic 55.0%
!! AGGCGTCGATGGCGTTGATA+TGG - chr7_3:618759-618778 Msa1087840:intron 55.0%
GGAGGAATGCATCCAATGGC+TGG - chr7_3:619012-619031 Msa1087840:intron 55.0%
AGTCAACATGCGTTCCGGAG+TGG - chr7_3:619576-619595 Msa1087840:intron 55.0%
ATGGGTAAAGGCGGAGGAGG+AGG - chr7_3:617168-617187 Msa1087840:three_prime_UTR 60.0%
! TGACGACGGCGAGAAGCATG+AGG + chr7_3:617255-617274 None:intergenic 60.0%
CATCGACGCCTTGGAAGCGA+TGG + chr7_3:618750-618769 None:intergenic 60.0%
!! CATCGCTTCCAAGGCGTCGA+TGG - chr7_3:618748-618767 Msa1087840:intron 60.0%
GGTAAAGGCGGAGGAGGAGG+AGG - chr7_3:617171-617190 Msa1087840:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 617168 619889 617168 ID=Msa1087840;Name=Msa1087840
chr7_3 mRNA 617168 619889 617168 ID=Msa1087840-mRNA-1;Parent=Msa1087840;Name=Msa1087840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|572|329
chr7_3 exon 617168 618558 617168 ID=Msa1087840-mRNA-1:exon:306;Parent=Msa1087840-mRNA-1
chr7_3 exon 619719 619889 619719 ID=Msa1087840-mRNA-1:exon:305;Parent=Msa1087840-mRNA-1
chr7_3 CDS 619719 619889 619719 ID=Msa1087840-mRNA-1:cds;Parent=Msa1087840-mRNA-1
chr7_3 CDS 617740 618558 617740 ID=Msa1087840-mRNA-1:cds;Parent=Msa1087840-mRNA-1
chr7_3 three_prime_UTR 617168 617739 617168 ID=Msa1087840-mRNA-1:three_prime_utr;Parent=Msa1087840-mRNA-1
Gene Sequence

>Msa1087840

ATGGGTAAAGGCGGAGGAGGAGGAGGAGAAGATGAAGAAGGTGTAATGATGGCTGGTGATTTCTTTTGGTCATATACCGATGAACCTCATGCTTCTCGCCGTCGTCAGATCCTCTCCAAATACCCTCAAATTAAACAACTCTTTGGTCCTGATCCCTTCGCATTCTTCAAGATTAGTGTTGTTGTTCTGCTTCAACTTGTTACTGCTATTTTACTTAAGGATGCAGGGTGGCTGAAGATACTTCTAGTAGCCTATTTTTTTGGCTCATTCCTCAACCACAATCTCTTCTTGGCTATCCATGAGCTCAGTCACAATCTTGCTTTTTCAACTCCTGTCTACAACCGTTGGCTTGGGATTTTCGCTAATCTCCCTATAGGCGTACCTATGTCTGTAACCTTCCAAAAGTATCACTTGGAGCACCATCGCTTCCAAGGCGTCGATGGCGTTGATATGGATATCCCCAGTCACATGGAAGCACATGTCGTAACAAATGTTCTTGCGAAAACCATTTGGGTCTTTTTACAGCTATTCTTTTATGCATTTCGACCGTTGTTTCTTAAACCGAAACCTCCAGGTATTTGGGAATTCATCAACTTCTCTGTTCAGATTGCCCTTGATGTCTCAATGGTTTATTTCTGGGGTTGGAAATCCTTAGCTTATCTCATACTAGCCACATTTGTTGGTGGAGGAATGCATCCAATGGCTGGTCACTTCATTTCAGAACATTATGTATTCAATCCTGAACAAGAGACATATTCTTACTACGGACCTTTGAATCTTCTCACATGGCATGTAGGTTACCACAATGAACACCATGATTTTCCAAGAATTCCTGGAAACAAACTTCACAAGGTGAAGGAGATTGCACCAGAATATTATGATAGTTTGTCACACTATAAATCATGGAGTCAGGTTATTTACATGTATATTATGGACAAAACAGTTGGACCTTATAGCAGAATGAAGAGAAAGCCAAGCAAAACTGAATGA
Protein sequence

>Msa1087840

MGKGGGGGGEDEEGVMMAGDFFWSYTDEPHASRRRQILSKYPQIKQLFGPDPFAFFKISVVVLLQLVTAILLKDAGWLKILLVAYFFGSFLNHNLFLAIHELSHNLAFSTPVYNRWLGIFANLPIGVPMSVTFQKYHLEHHRFQGVDGVDMDIPSHMEAHVVTNVLAKTIWVFLQLFFYAFRPLFLKPKPPGIWEFINFSVQIALDVSMVYFWGWKSLAYLILATFVGGGMHPMAGHFISEHYVFNPEQETYSYYGPLNLLTWHVGYHNEHHDFPRIPGNKLHKVKEIAPEYYDSLSHYKSWSQVIYMYIMDKTVGPYSRMKRKPSKTE*