AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0846900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846900 MtrunA17_Chr5g0418971 99.612 258 1 0 1 258 1 258 0.0 527
Msa0846900 MtrunA17_Chr4g0043141 82.773 238 22 1 26 244 1 238 5.82e-145 407
Msa0846900 MtrunA17_Chr2g0325591 75.502 249 60 1 1 249 1 248 1.28e-141 399
Msa0846900 MtrunA17_Chr8g0379011 76.955 243 56 0 1 243 1 243 1.24e-140 396
Msa0846900 MtrunA17_Chr2g0316011 74.897 243 61 0 7 249 8 250 1.78e-137 389
Msa0846900 MtrunA17_Chr2g0283791 74.897 243 59 2 11 253 9 249 2.26e-134 381
Msa0846900 MtrunA17_Chr3g0132301 70.817 257 72 3 2 256 3 258 1.41e-126 361
Msa0846900 MtrunA17_Chr5g0426551 68.627 255 75 2 2 254 3 254 7.31e-123 352
Msa0846900 MtrunA17_Chr3g0133161 66.809 235 75 1 7 238 11 245 2.88e-112 325
Msa0846900 MtrunA17_Chr1g0164601 52.542 236 102 5 7 237 11 241 5.01e-73 225
Msa0846900 MtrunA17_Chr3g0082111 52.119 236 103 5 7 237 41 271 1.88e-71 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0846900 AT1G26480.1 84.556 259 35 1 3 256 6 264 1.14e-161 451
Msa0846900 AT1G34760.1 79.835 243 48 1 4 246 2 243 1.53e-142 402
Msa0846900 AT1G34760.2 79.835 243 48 1 4 246 2 243 1.71e-142 402
Msa0846900 AT2G42590.3 72.285 267 69 2 1 262 1 267 4.49e-140 396
Msa0846900 AT2G42590.1 74.219 256 65 1 1 255 1 256 1.45e-139 395
Msa0846900 AT2G42590.2 73.725 255 67 0 1 255 1 255 3.30e-138 391
Msa0846900 AT1G22300.2 74.400 250 64 0 4 253 2 251 3.84e-134 380
Msa0846900 AT1G22300.1 74.400 250 64 0 4 253 2 251 4.38e-134 380
Msa0846900 AT1G22300.3 76.250 240 57 0 4 243 2 241 8.25e-133 377
Msa0846900 AT1G35160.1 72.222 252 68 1 7 256 11 262 1.95e-126 362
Msa0846900 AT3G02520.1 71.705 258 65 3 7 256 5 262 3.05e-126 361
Msa0846900 AT3G02520.2 71.705 258 65 3 7 256 5 262 3.05e-126 361
Msa0846900 AT5G38480.1 71.429 252 70 2 7 256 4 255 5.87e-126 360
Msa0846900 AT1G78300.1 70.635 252 72 2 7 256 5 256 2.12e-124 356
Msa0846900 AT5G38480.3 72.800 250 63 4 7 254 4 250 3.66e-124 355
Msa0846900 AT5G38480.2 72.800 250 63 4 7 254 4 250 3.66e-124 355
Msa0846900 AT4G09000.1 70.732 246 70 1 2 245 5 250 8.50e-123 352
Msa0846900 AT1G35160.2 74.786 234 57 1 7 238 11 244 2.58e-122 352
Msa0846900 AT4G09000.2 72.385 239 64 1 2 238 5 243 1.49e-120 348
Msa0846900 AT5G16050.1 66.288 264 79 2 1 254 1 264 5.53e-119 343
Msa0846900 AT5G16050.2 66.288 264 79 2 1 254 1 264 5.53e-119 343
Msa0846900 AT5G65430.2 66.803 244 78 1 1 241 1 244 2.03e-114 330
Msa0846900 AT5G65430.1 66.397 247 80 1 1 244 1 247 2.25e-114 330
Msa0846900 AT5G65430.3 67.220 241 76 1 1 238 1 241 3.19e-113 328
Msa0846900 AT5G10450.1 65.021 243 82 1 1 240 1 243 2.91e-112 325
Msa0846900 AT5G10450.2 64.754 244 83 1 1 241 1 244 3.41e-112 325
Msa0846900 AT5G10450.3 65.145 241 81 1 1 238 1 241 1.66e-111 323
Msa0846900 AT5G10450.4 65.145 241 81 1 1 238 1 241 5.13e-111 323
Msa0846900 AT1G78220.1 51.709 234 112 1 4 236 2 235 6.90e-82 248
Msa0846900 AT1G22290.2 49.537 216 85 5 4 214 2 198 3.27e-59 189
Msa0846900 AT1G22290.1 49.296 213 84 5 4 211 2 195 1.59e-58 186
Msa0846900 AT2G10450.1 48.387 62 32 0 204 265 16 77 1.67e-12 62.8

Find 100 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATATCACCACAGATTT+TGG 0.109197 5_4:+27739830 None:intergenic
GAACCGATTACTTACCTTTC+AGG 0.184385 5_4:+27738756 None:intergenic
GGACTAGACAAGGTGGAATT+TGG 0.236275 5_4:-27737647 Msa0846900:three_prime_UTR
TGAGCAGAAGGAGGAGTCTA+AGG 0.249783 5_4:-27739913 Msa0846900:CDS
GCAGGAAAGGTGATTATTTC+CGG 0.278329 5_4:-27739051 Msa0846900:intron
CGCCTCATCAAAAGCTTGTT+TGG 0.319773 5_4:+27738648 None:intergenic
TAGATACATCACTACCGAAT+TGG 0.327415 5_4:+27737719 None:intergenic
AGGCAAAGAAGAAGAAGAAA+TGG 0.328933 5_4:+27740966 None:intergenic
TACCTCAGGCTCAGCGGGTT+TGG 0.338393 5_4:+27737992 None:intergenic
AGAGTTCCTCCTCAACCTTT+TGG 0.345006 5_4:+27739853 None:intergenic
CAAAAGCTTGTTTGGCCAAA+TGG 0.349323 5_4:+27738656 None:intergenic
CAGCATTGATAAGATTTCAT+TGG 0.357814 5_4:-27737752 Msa0846900:CDS
TGCATTCATCGAATCTGAAT+TGG 0.359077 5_4:-27737442 Msa0846900:three_prime_UTR
ATAAGATTTCATTGGATCTC+TGG 0.360076 5_4:-27737744 Msa0846900:CDS
AACTTACAGGGCCTGCCATT+TGG 0.370260 5_4:-27738671 Msa0846900:intron
TTCATATCTTTCAGCTTGTT+CGG 0.370539 5_4:+27740841 None:intergenic
AGATACATCACTACCGAATT+GGG 0.372560 5_4:+27737720 None:intergenic
GAGAGAGACCCAAGTTTACT+TGG 0.378465 5_4:-27740873 Msa0846900:CDS
AGGTGCAGATCTTCCGGCTT+CGG 0.381800 5_4:+27737588 None:intergenic
GACAATTATTGACCAGCATC+TGG 0.387445 5_4:-27739808 Msa0846900:CDS
AATCAGAGGTCCAGAGAGTC+AGG 0.404705 5_4:+27738551 None:intergenic
AAAGCTTGGCCAAGTAAACT+TGG 0.423724 5_4:+27740864 None:intergenic
TTCAGCTTGTTCGGAAAGCT+TGG 0.436972 5_4:+27740850 None:intergenic
GGTATGTGTAAGATTGGTTT+CGG 0.440894 5_4:-27737973 Msa0846900:CDS
TGAGAGACAACCTGACTCTC+TGG 0.448857 5_4:-27738561 Msa0846900:CDS
CGAAAATCGAGCTTGTTGTA+AGG 0.449290 5_4:+27741037 None:intergenic
ATAGAAATAAATAAGTTTGA+AGG 0.454280 5_4:+27737541 None:intergenic
AATTACACCATTCAGTAAAA+CGG 0.456201 5_4:+27737387 None:intergenic
AGCTTGTTTGGCCAAATGGC+AGG 0.464126 5_4:+27738660 None:intergenic
AAAGACAGGTGCAGATCTTC+CGG 0.468481 5_4:+27737582 None:intergenic
TGATGAGGCGATTGCAGAGT+TGG 0.469932 5_4:-27738635 Msa0846900:CDS
GGCAAAGAAGAAGAAGAAAT+GGG 0.475683 5_4:+27740967 None:intergenic
GCCTGAGGTATGTGTAAGAT+TGG 0.479850 5_4:-27737979 Msa0846900:CDS
AGACGGATTGGATGTGTTGA+TGG 0.480349 5_4:+27738828 None:intergenic
TCTAAGATACTCAGTGAAGA+GGG 0.486900 5_4:-27737700 Msa0846900:CDS
GCTTCGGTTGGATAACTAAG+AGG 0.493581 5_4:+27737604 None:intergenic
GCTTCTGCCGAGGTGGAAGC+AGG 0.494681 5_4:+27739783 None:intergenic
TGGATCTTGTTGTTTGAAAG+AGG 0.501197 5_4:+27741088 None:intergenic
ACCTCTGATTTGCCAGAGGA+TGG 0.501755 5_4:-27738538 Msa0846900:CDS
CTTAGTTATCCAACCGAAGC+CGG 0.505221 5_4:-27737601 Msa0846900:three_prime_UTR
TTGGATCTCTGGCCCCAATT+CGG 0.506761 5_4:-27737733 Msa0846900:CDS
GCAGATCTTCCGGCTTCGGT+TGG 0.512754 5_4:+27737592 None:intergenic
ACACATACCTCAGGCTCAGC+GGG 0.513323 5_4:+27737987 None:intergenic
GATCAAGAGTTACTGCCAAA+AGG 0.518570 5_4:-27739868 Msa0846900:CDS
GAACAAGCTGAAAGATATGA+AGG 0.522838 5_4:-27740839 Msa0846900:intron
TCTTGAACTCAGCAAGATAC+CGG 0.525675 5_4:+27739032 None:intergenic
TTGGTGCACGAAGAGCTTCA+TGG 0.527662 5_4:-27739953 Msa0846900:CDS
CTCCTCCTTCTGCTCAATTG+AGG 0.527914 5_4:+27739920 None:intergenic
TAGAAATAAATAAGTTTGAA+GGG 0.529314 5_4:+27737542 None:intergenic
ACTTTACTTGAAAACAGATA+AGG 0.530220 5_4:+27737516 None:intergenic
GAGTTACTGCCAAAAGGTTG+AGG 0.532495 5_4:-27739862 Msa0846900:CDS
TATCCCTTACCTCCATCCTC+TGG 0.533069 5_4:+27738526 None:intergenic
TGGAAGCAGGAACCAGATGC+TGG 0.540094 5_4:+27739796 None:intergenic
GGATGTGATGCGAGAGAGAA+GGG 0.540129 5_4:+27740993 None:intergenic
TCAACACATCCAATCCGTCT+TGG 0.541520 5_4:-27738825 Msa0846900:CDS
GAGAGGAACCTCCTCTCAGT+TGG 0.543164 5_4:-27739990 Msa0846900:CDS
AGTGCAAGTCCAAGACGGAT+TGG 0.548630 5_4:+27738816 None:intergenic
AAGACTGAAATCTCAACCGT+TGG 0.554013 5_4:+27741068 None:intergenic
AAGATCAGTGTTTGCAGTGG+CGG 0.557206 5_4:+27738851 None:intergenic
TGCGAGAGAGAAGGGTGAAG+TGG 0.558298 5_4:+27741001 None:intergenic
AAGAAGAAGAAGAAATGGGA+TGG 0.564884 5_4:+27740971 None:intergenic
TATGTCCTCAATTGAGCAGA+AGG 0.567548 5_4:-27739925 Msa0846900:CDS
GAAAATCGAGCTTGTTGTAA+GGG 0.568605 5_4:+27741038 None:intergenic
ACCAATCTTACACATACCTC+AGG 0.571060 5_4:+27737978 None:intergenic
AGAAGAAGAAGAAATGGGAT+GGG 0.571812 5_4:+27740972 None:intergenic
CTATGGATTTGGACTAGACA+AGG 0.572676 5_4:-27737657 Msa0846900:three_prime_UTR
GACTGACCAAGAAAGAAAAG+AGG 0.574308 5_4:-27739011 Msa0846900:CDS
AACATTAGCTTCTGCCGAGG+TGG 0.575120 5_4:+27739776 None:intergenic
CTTGTATGACTCTTCACTCA+AGG 0.578019 5_4:+27738609 None:intergenic
AGCCAAACCCGCTGAGCCTG+AGG 0.586083 5_4:-27737994 Msa0846900:CDS
TTGAACTAACTGTGGAAGAG+AGG 0.589747 5_4:-27740007 Msa0846900:CDS
GAGCAGAAGGAGGAGTCTAA+GGG 0.589752 5_4:-27739912 Msa0846900:CDS
AGGGTGAAGTGGTTATATAG+TGG 0.591426 5_4:+27741012 None:intergenic
ATCTAAGATACTCAGTGAAG+AGG 0.591608 5_4:-27737701 Msa0846900:CDS
CTTGAGTGAAGAGTCATACA+AGG 0.594010 5_4:-27738608 Msa0846900:CDS
CTGGACCTCTGATTTGCCAG+AGG 0.595427 5_4:-27738542 Msa0846900:CDS
GGTTGAATGTATGAAGAAAG+TGG 0.595766 5_4:-27740042 Msa0846900:CDS
GGGATGTGATGCGAGAGAGA+AGG 0.597278 5_4:+27740992 None:intergenic
GCTGCTGAGCAGTCACTGAA+AGG 0.600437 5_4:-27738989 Msa0846900:CDS
CTTCGGTTGGATAACTAAGA+GGG 0.603101 5_4:+27737605 None:intergenic
AAGCTTGGCCAAGTAAACTT+GGG 0.611139 5_4:+27740865 None:intergenic
TCCATCCTCTGGCAAATCAG+AGG 0.621846 5_4:+27738537 None:intergenic
AGATTATGAACTCTCCTGAA+AGG 0.626121 5_4:-27738770 Msa0846900:intron
GATACATCACTACCGAATTG+GGG 0.638690 5_4:+27737721 None:intergenic
GAGGAACTCTCCAAAATCTG+TGG 0.639940 5_4:-27739840 Msa0846900:CDS
TTTCAAACAACAAGATCCAA+CGG 0.644319 5_4:-27741084 Msa0846900:five_prime_UTR
TCTGATTTGCCAGAGGATGG+AGG 0.645454 5_4:-27738535 Msa0846900:intron
ACTTGATGTTGAACTAACTG+TGG 0.647498 5_4:-27740015 Msa0846900:CDS
AGGGCACGAGAGCTATGAAG+TGG 0.649523 5_4:+27737624 None:intergenic
TTACTGCCAAAAGGTTGAGG+AGG 0.652188 5_4:-27739859 Msa0846900:CDS
AGTTGAGTGCAAGTCCAAGA+CGG 0.652366 5_4:+27738811 None:intergenic
GTCCTCAATTGAGCAGAAGG+AGG 0.654997 5_4:-27739922 Msa0846900:CDS
TACACATACCTCAGGCTCAG+CGG 0.668404 5_4:+27737986 None:intergenic
CTAAGATACTCAGTGAAGAG+GGG 0.671550 5_4:-27737699 Msa0846900:CDS
GGTCTCTCTCTCTTTCTCAG+CGG 0.674609 5_4:+27740886 None:intergenic
GAAAACATTAGCTTCTGCCG+AGG 0.676043 5_4:+27739773 None:intergenic
TCTGGTTCCTGCTTCCACCT+CGG 0.676873 5_4:-27739790 Msa0846900:CDS
TGGATTTGGACTAGACAAGG+TGG 0.693750 5_4:-27737654 Msa0846900:three_prime_UTR
TGGAAGATCAGTGTTTGCAG+TGG 0.713574 5_4:+27738848 None:intergenic
GCAGTCACTGAAAGGATACG+AGG 0.737880 5_4:-27738981 Msa0846900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTATTTTAATTT+TGG - chr5_4:27737782-27737801 Msa0846900:intron 0.0%
!!! ATTTTATTTTATTTTAATTT+TGG - chr5_4:27737782-27737801 Msa0846900:intron 0.0%
!!! TTTTTTGCTTATAAAAATTA+GGG - chr5_4:27739943-27739962 Msa0846900:CDS 10.0%
!!! TTTTTTGCTTATAAAAATTA+GGG - chr5_4:27739943-27739962 Msa0846900:CDS 10.0%
!!! AAAAGATTTGATTTTTGATT+TGG - chr5_4:27737697-27737716 Msa0846900:CDS 15.0%
!!! AAAGATTTGATTTTTGATTT+GGG - chr5_4:27737698-27737717 Msa0846900:CDS 15.0%
!! AATATGTTATCTAAAAATGT+TGG - chr5_4:27737944-27737963 Msa0846900:intron 15.0%
!! TGTACATTCATAATAAATTA+TGG - chr5_4:27737993-27738012 Msa0846900:CDS 15.0%
!! GTACATTCATAATAAATTAT+GGG - chr5_4:27737994-27738013 Msa0846900:CDS 15.0%
!! AAAAATTACGTGTTTAATAA+TGG + chr5_4:27738201-27738220 None:intergenic 15.0%
!! AAAATAATATGTCTACTAAA+AGG + chr5_4:27738765-27738784 None:intergenic 15.0%
!!! AATTTTTATAAGCAAAAAAC+TGG + chr5_4:27739942-27739961 None:intergenic 15.0%
!!! GTTTTTTGCTTATAAAAATT+AGG - chr5_4:27739942-27739961 Msa0846900:CDS 15.0%
!! AAAGTATAGGTATATATTAT+TGG - chr5_4:27740020-27740039 Msa0846900:CDS 15.0%
!! AAGTATAGGTATATATTATT+GGG - chr5_4:27740021-27740040 Msa0846900:CDS 15.0%
!! CTATAAATCTATAATAACTA+TGG + chr5_4:27740485-27740504 None:intergenic 15.0%
!!! AAATTCTTTTAAGTGAAAAA+AGG - chr5_4:27740533-27740552 Msa0846900:intron 15.0%
!!! AATTCTTTTAAGTGAAAAAA+GGG - chr5_4:27740534-27740553 Msa0846900:intron 15.0%
!!! AGATAATAATGTCAAATTTT+GGG + chr5_4:27740613-27740632 None:intergenic 15.0%
!!! AAGATAATAATGTCAAATTT+TGG + chr5_4:27740614-27740633 None:intergenic 15.0%
!! TAGAAATAAATAAGTTTGAA+GGG + chr5_4:27740851-27740870 None:intergenic 15.0%
!! ATAGAAATAAATAAGTTTGA+AGG + chr5_4:27740852-27740871 None:intergenic 15.0%
!!! TTAAAATGTTTTTGTTTTCA+TGG - chr5_4:27740980-27740999 Msa0846900:five_prime_UTR 15.0%
!!! AAAAGATTTGATTTTTGATT+TGG - chr5_4:27737697-27737716 Msa0846900:CDS 15.0%
!!! AAAGATTTGATTTTTGATTT+GGG - chr5_4:27737698-27737717 Msa0846900:CDS 15.0%
!! AATATGTTATCTAAAAATGT+TGG - chr5_4:27737944-27737963 Msa0846900:intron 15.0%
!! TGTACATTCATAATAAATTA+TGG - chr5_4:27737993-27738012 Msa0846900:CDS 15.0%
!! GTACATTCATAATAAATTAT+GGG - chr5_4:27737994-27738013 Msa0846900:CDS 15.0%
!! AAAAATTACGTGTTTAATAA+TGG + chr5_4:27738201-27738220 None:intergenic 15.0%
!! AAAATAATATGTCTACTAAA+AGG + chr5_4:27738765-27738784 None:intergenic 15.0%
!!! AATTTTTATAAGCAAAAAAC+TGG + chr5_4:27739942-27739961 None:intergenic 15.0%
!!! GTTTTTTGCTTATAAAAATT+AGG - chr5_4:27739942-27739961 Msa0846900:CDS 15.0%
!! AAAGTATAGGTATATATTAT+TGG - chr5_4:27740020-27740039 Msa0846900:CDS 15.0%
!! AAGTATAGGTATATATTATT+GGG - chr5_4:27740021-27740040 Msa0846900:CDS 15.0%
!! CTATAAATCTATAATAACTA+TGG + chr5_4:27740485-27740504 None:intergenic 15.0%
!!! AAATTCTTTTAAGTGAAAAA+AGG - chr5_4:27740533-27740552 Msa0846900:intron 15.0%
!!! AATTCTTTTAAGTGAAAAAA+GGG - chr5_4:27740534-27740553 Msa0846900:intron 15.0%
!!! AGATAATAATGTCAAATTTT+GGG + chr5_4:27740613-27740632 None:intergenic 15.0%
!!! AAGATAATAATGTCAAATTT+TGG + chr5_4:27740614-27740633 None:intergenic 15.0%
!! TAGAAATAAATAAGTTTGAA+GGG + chr5_4:27740851-27740870 None:intergenic 15.0%
!! ATAGAAATAAATAAGTTTGA+AGG + chr5_4:27740852-27740871 None:intergenic 15.0%
!!! TTAAAATGTTTTTGTTTTCA+TGG - chr5_4:27740980-27740999 Msa0846900:five_prime_UTR 15.0%
!!! TTGTTATTTTTTAATGGGTT+TGG - chr5_4:27737588-27737607 Msa0846900:three_prime_UTR 20.0%
!!! TGTTATTTTTTAATGGGTTT+GGG - chr5_4:27737589-27737608 Msa0846900:three_prime_UTR 20.0%
!!! TGTTTTTTTTTGTTGTGATT+TGG - chr5_4:27737651-27737670 Msa0846900:three_prime_UTR 20.0%
!!! GTTTTTTTTTGTTGTGATTT+GGG - chr5_4:27737652-27737671 Msa0846900:three_prime_UTR 20.0%
!! ATCTTCTAAATTGAGAAATT+TGG - chr5_4:27737918-27737937 Msa0846900:intron 20.0%
!! ATTGAACAATTCACTTTAAA+AGG + chr5_4:27738075-27738094 None:intergenic 20.0%
!!! AAATTATACAGTTTTCAACA+TGG + chr5_4:27738277-27738296 None:intergenic 20.0%
!!! CTTTGAATTCTAGTTAATTA+TGG - chr5_4:27738999-27739018 Msa0846900:CDS 20.0%
!! AGATATAGATACTACATTAT+AGG - chr5_4:27739027-27739046 Msa0846900:CDS 20.0%
!!! GTAATTAAGCTTTTGTTATT+TGG - chr5_4:27740286-27740305 Msa0846900:intron 20.0%
!!! ATAATAATGTCAAATTTTGG+GGG + chr5_4:27740611-27740630 None:intergenic 20.0%
!!! GATAATAATGTCAAATTTTG+GGG + chr5_4:27740612-27740631 None:intergenic 20.0%
!!! TTGTTATTTTTTAATGGGTT+TGG - chr5_4:27737588-27737607 Msa0846900:three_prime_UTR 20.0%
!!! TGTTATTTTTTAATGGGTTT+GGG - chr5_4:27737589-27737608 Msa0846900:three_prime_UTR 20.0%
!!! TGTTTTTTTTTGTTGTGATT+TGG - chr5_4:27737651-27737670 Msa0846900:three_prime_UTR 20.0%
!!! GTTTTTTTTTGTTGTGATTT+GGG - chr5_4:27737652-27737671 Msa0846900:three_prime_UTR 20.0%
!! ATCTTCTAAATTGAGAAATT+TGG - chr5_4:27737918-27737937 Msa0846900:intron 20.0%
!! ATTGAACAATTCACTTTAAA+AGG + chr5_4:27738075-27738094 None:intergenic 20.0%
!!! AAATTATACAGTTTTCAACA+TGG + chr5_4:27738277-27738296 None:intergenic 20.0%
!!! CTTTGAATTCTAGTTAATTA+TGG - chr5_4:27738999-27739018 Msa0846900:CDS 20.0%
!! AGATATAGATACTACATTAT+AGG - chr5_4:27739027-27739046 Msa0846900:CDS 20.0%
!!! GTAATTAAGCTTTTGTTATT+TGG - chr5_4:27740286-27740305 Msa0846900:intron 20.0%
!!! ATAATAATGTCAAATTTTGG+GGG + chr5_4:27740611-27740630 None:intergenic 20.0%
!!! GATAATAATGTCAAATTTTG+GGG + chr5_4:27740612-27740631 None:intergenic 20.0%
!! AGATCAATCATTTTCTAGAT+TGG - chr5_4:27737738-27737757 Msa0846900:CDS 25.0%
! ATAATAAATTATGGGTGTGT+TGG - chr5_4:27738002-27738021 Msa0846900:CDS 25.0%
!! ACGTAATTTTTATCGTATCA+GGG - chr5_4:27738210-27738229 Msa0846900:intron 25.0%
! ATGTATTCAATATGCAGAAA+TGG - chr5_4:27738327-27738346 Msa0846900:intron 25.0%
! CATTATAGGTTATAGATTAC+AGG - chr5_4:27739041-27739060 Msa0846900:CDS 25.0%
! GTTAGGAGTTTAATAAACAA+GGG + chr5_4:27739108-27739127 None:intergenic 25.0%
! AGTTAGGAGTTTAATAAACA+AGG + chr5_4:27739109-27739128 None:intergenic 25.0%
! AAGAGATTTCATATCACATA+AGG + chr5_4:27739263-27739282 None:intergenic 25.0%
!!! TCACAACTGTTTTGATTATT+AGG - chr5_4:27739510-27739529 Msa0846900:intron 25.0%
!! GTTTCTATCTTTTGTCTAAA+TGG - chr5_4:27739687-27739706 Msa0846900:intron 25.0%
! ATAGGTATATATTATTGGGT+AGG - chr5_4:27740025-27740044 Msa0846900:CDS 25.0%
! GCTTAATTACACAATTAACA+AGG + chr5_4:27740276-27740295 None:intergenic 25.0%
!!! TTTTTAAGCTTTTCTTGCTA+TGG - chr5_4:27740716-27740735 Msa0846900:intron 25.0%
! AAAAAAAACAACACAAAGAC+AGG + chr5_4:27740825-27740844 None:intergenic 25.0%
! ACTTTACTTGAAAACAGATA+AGG + chr5_4:27740877-27740896 None:intergenic 25.0%
! AATTACACCATTCAGTAAAA+CGG + chr5_4:27741006-27741025 None:intergenic 25.0%
!!! TGTCTTGTTTTTCACTTAAA+CGG + chr5_4:27741048-27741067 None:intergenic 25.0%
! TTTAAGTGAAAAACAAGACA+TGG - chr5_4:27741048-27741067 Msa0846900:five_prime_UTR 25.0%
! TTAAGTGAAAAACAAGACAT+GGG - chr5_4:27741049-27741068 Msa0846900:five_prime_UTR 25.0%
!! AGATCAATCATTTTCTAGAT+TGG - chr5_4:27737738-27737757 Msa0846900:CDS 25.0%
! ATAATAAATTATGGGTGTGT+TGG - chr5_4:27738002-27738021 Msa0846900:CDS 25.0%
!! ACGTAATTTTTATCGTATCA+GGG - chr5_4:27738210-27738229 Msa0846900:intron 25.0%
! ATGTATTCAATATGCAGAAA+TGG - chr5_4:27738327-27738346 Msa0846900:intron 25.0%
! CATTATAGGTTATAGATTAC+AGG - chr5_4:27739041-27739060 Msa0846900:CDS 25.0%
! GTTAGGAGTTTAATAAACAA+GGG + chr5_4:27739108-27739127 None:intergenic 25.0%
! AGTTAGGAGTTTAATAAACA+AGG + chr5_4:27739109-27739128 None:intergenic 25.0%
! AAGAGATTTCATATCACATA+AGG + chr5_4:27739263-27739282 None:intergenic 25.0%
!!! TCACAACTGTTTTGATTATT+AGG - chr5_4:27739510-27739529 Msa0846900:intron 25.0%
!! GTTTCTATCTTTTGTCTAAA+TGG - chr5_4:27739687-27739706 Msa0846900:intron 25.0%
! ATAGGTATATATTATTGGGT+AGG - chr5_4:27740025-27740044 Msa0846900:CDS 25.0%
! GCTTAATTACACAATTAACA+AGG + chr5_4:27740276-27740295 None:intergenic 25.0%
!!! TTTTTAAGCTTTTCTTGCTA+TGG - chr5_4:27740716-27740735 Msa0846900:intron 25.0%
! AAAAAAAACAACACAAAGAC+AGG + chr5_4:27740825-27740844 None:intergenic 25.0%
! ACTTTACTTGAAAACAGATA+AGG + chr5_4:27740877-27740896 None:intergenic 25.0%
! AATTACACCATTCAGTAAAA+CGG + chr5_4:27741006-27741025 None:intergenic 25.0%
!!! TGTCTTGTTTTTCACTTAAA+CGG + chr5_4:27741048-27741067 None:intergenic 25.0%
! TTTAAGTGAAAAACAAGACA+TGG - chr5_4:27741048-27741067 Msa0846900:five_prime_UTR 25.0%
! TTAAGTGAAAAACAAGACAT+GGG - chr5_4:27741049-27741068 Msa0846900:five_prime_UTR 25.0%
TTTCAAACAACAAGATCCAA+CGG - chr5_4:27737306-27737325 Msa0846900:three_prime_UTR 30.0%
! TTCATATCTTTCAGCTTGTT+CGG + chr5_4:27737552-27737571 None:intergenic 30.0%
! TTATTGATGTGTCATTGTGT+TGG - chr5_4:27737844-27737863 Msa0846900:intron 30.0%
!! GTTTGATTTGATCCTTAGAT+AGG - chr5_4:27737883-27737902 Msa0846900:intron 30.0%
ATTTGATCCTTAGATAGGAA+AGG - chr5_4:27737888-27737907 Msa0846900:intron 30.0%
ACAACAGTAATGACTAATGA+TGG - chr5_4:27738113-27738132 Msa0846900:intron 30.0%
CAACAGTAATGACTAATGAT+GGG - chr5_4:27738114-27738133 Msa0846900:intron 30.0%
!! TTACGTGTTTAATAATGGAC+TGG + chr5_4:27738196-27738215 None:intergenic 30.0%
! CACGTAATTTTTATCGTATC+AGG - chr5_4:27738209-27738228 Msa0846900:intron 30.0%
! CGTAATTTTTATCGTATCAG+GGG - chr5_4:27738211-27738230 Msa0846900:intron 30.0%
GTTGGATATAAAAACGTCAT+TGG - chr5_4:27738418-27738437 Msa0846900:intron 30.0%
ATTTATCGCTATCTTCGTTA+TGG - chr5_4:27738728-27738747 Msa0846900:intron 30.0%
AAACATAGAATCTGTATGAC+TGG - chr5_4:27738814-27738833 Msa0846900:CDS 30.0%
AGTAGGACTTAATCATGAAA+CGG + chr5_4:27738901-27738920 None:intergenic 30.0%
TTATATTCCGCTCAAGTTAT+AGG - chr5_4:27738947-27738966 Msa0846900:intron 30.0%
TATATTCCGCTCAAGTTATA+GGG - chr5_4:27738948-27738967 Msa0846900:intron 30.0%
TATAGGGTTTCAGATAAAGA+TGG - chr5_4:27738964-27738983 Msa0846900:intron 30.0%
! TTCACTGTTAGATTCTAGTT+AGG + chr5_4:27739125-27739144 None:intergenic 30.0%
ATGATAAGGACTACGAAATA+TGG - chr5_4:27739151-27739170 Msa0846900:intron 30.0%
TGTGATATGAAATCTCTTTC+TGG - chr5_4:27739265-27739284 Msa0846900:intron 30.0%
! AAAGAAGCATAAGGAAATCA+GGG + chr5_4:27739315-27739334 None:intergenic 30.0%
! AAAAGAAGCATAAGGAAATC+AGG + chr5_4:27739316-27739335 None:intergenic 30.0%
! TCTATCTTTTGTCTAAATGG+TGG - chr5_4:27739690-27739709 Msa0846900:intron 30.0%
ATTAAAAATCTCGCATCTCA+GGG + chr5_4:27739976-27739995 None:intergenic 30.0%
! ACCAAACACATTGAAAGTAT+AGG - chr5_4:27740007-27740026 Msa0846900:CDS 30.0%
ACCTATACTTTCAATGTGTT+TGG + chr5_4:27740011-27740030 None:intergenic 30.0%
GTATATATTATTGGGTAGGT+TGG - chr5_4:27740029-27740048 Msa0846900:CDS 30.0%
!!! CTAATTTTTTGACAAGGTTG+GGG + chr5_4:27740154-27740173 None:intergenic 30.0%
!!! CCTAATTTTTTGACAAGGTT+GGG + chr5_4:27740155-27740174 None:intergenic 30.0%
!!! TCCTAATTTTTTGACAAGGT+TGG + chr5_4:27740156-27740175 None:intergenic 30.0%
!!! CTCATCCTAATTTTTTGACA+AGG + chr5_4:27740160-27740179 None:intergenic 30.0%
TGGATAATTTATCCAATAGC+AGG + chr5_4:27740202-27740221 None:intergenic 30.0%
! ACAATATGACTAAGGTTTTC+TGG + chr5_4:27740222-27740241 None:intergenic 30.0%
! TTCTGGAAACAATATGACTA+AGG + chr5_4:27740230-27740249 None:intergenic 30.0%
AAAGGTTAATACTCTCTTAC+AGG - chr5_4:27740349-27740368 Msa0846900:intron 30.0%
! GGTAGAAATTAATGGATGTT+TGG + chr5_4:27740590-27740609 None:intergenic 30.0%
!! ATTTTGGGGGTAGAAATTAA+TGG + chr5_4:27740598-27740617 None:intergenic 30.0%
!! CAGCATTGATAAGATTTCAT+TGG - chr5_4:27740638-27740657 Msa0846900:intron 30.0%
ATAAGATTTCATTGGATCTC+TGG - chr5_4:27740646-27740665 Msa0846900:intron 30.0%
TGCAGAAAAATGTGCTTAAA+AGG + chr5_4:27740932-27740951 None:intergenic 30.0%
! TTTTTCACTTAAACGGATCA+TGG + chr5_4:27741041-27741060 None:intergenic 30.0%
! GGGAAATACATTTTCTTAAC+TGG - chr5_4:27741069-27741088 Msa0846900:five_prime_UTR 30.0%
TTTCAAACAACAAGATCCAA+CGG - chr5_4:27737306-27737325 Msa0846900:three_prime_UTR 30.0%
! TTCATATCTTTCAGCTTGTT+CGG + chr5_4:27737552-27737571 None:intergenic 30.0%
! TTATTGATGTGTCATTGTGT+TGG - chr5_4:27737844-27737863 Msa0846900:intron 30.0%
!! GTTTGATTTGATCCTTAGAT+AGG - chr5_4:27737883-27737902 Msa0846900:intron 30.0%
ATTTGATCCTTAGATAGGAA+AGG - chr5_4:27737888-27737907 Msa0846900:intron 30.0%
ACAACAGTAATGACTAATGA+TGG - chr5_4:27738113-27738132 Msa0846900:intron 30.0%
CAACAGTAATGACTAATGAT+GGG - chr5_4:27738114-27738133 Msa0846900:intron 30.0%
!! TTACGTGTTTAATAATGGAC+TGG + chr5_4:27738196-27738215 None:intergenic 30.0%
! CACGTAATTTTTATCGTATC+AGG - chr5_4:27738209-27738228 Msa0846900:intron 30.0%
! CGTAATTTTTATCGTATCAG+GGG - chr5_4:27738211-27738230 Msa0846900:intron 30.0%
GTTGGATATAAAAACGTCAT+TGG - chr5_4:27738418-27738437 Msa0846900:intron 30.0%
ATTTATCGCTATCTTCGTTA+TGG - chr5_4:27738728-27738747 Msa0846900:intron 30.0%
AAACATAGAATCTGTATGAC+TGG - chr5_4:27738814-27738833 Msa0846900:CDS 30.0%
AGTAGGACTTAATCATGAAA+CGG + chr5_4:27738901-27738920 None:intergenic 30.0%
TTATATTCCGCTCAAGTTAT+AGG - chr5_4:27738947-27738966 Msa0846900:intron 30.0%
TATATTCCGCTCAAGTTATA+GGG - chr5_4:27738948-27738967 Msa0846900:intron 30.0%
TATAGGGTTTCAGATAAAGA+TGG - chr5_4:27738964-27738983 Msa0846900:intron 30.0%
! TTCACTGTTAGATTCTAGTT+AGG + chr5_4:27739125-27739144 None:intergenic 30.0%
ATGATAAGGACTACGAAATA+TGG - chr5_4:27739151-27739170 Msa0846900:intron 30.0%
TGTGATATGAAATCTCTTTC+TGG - chr5_4:27739265-27739284 Msa0846900:intron 30.0%
! AAAGAAGCATAAGGAAATCA+GGG + chr5_4:27739315-27739334 None:intergenic 30.0%
! AAAAGAAGCATAAGGAAATC+AGG + chr5_4:27739316-27739335 None:intergenic 30.0%
! TCTATCTTTTGTCTAAATGG+TGG - chr5_4:27739690-27739709 Msa0846900:intron 30.0%
ATTAAAAATCTCGCATCTCA+GGG + chr5_4:27739976-27739995 None:intergenic 30.0%
! ACCAAACACATTGAAAGTAT+AGG - chr5_4:27740007-27740026 Msa0846900:CDS 30.0%
ACCTATACTTTCAATGTGTT+TGG + chr5_4:27740011-27740030 None:intergenic 30.0%
GTATATATTATTGGGTAGGT+TGG - chr5_4:27740029-27740048 Msa0846900:CDS 30.0%
!!! CTAATTTTTTGACAAGGTTG+GGG + chr5_4:27740154-27740173 None:intergenic 30.0%
!!! CCTAATTTTTTGACAAGGTT+GGG + chr5_4:27740155-27740174 None:intergenic 30.0%
!!! TCCTAATTTTTTGACAAGGT+TGG + chr5_4:27740156-27740175 None:intergenic 30.0%
!!! CTCATCCTAATTTTTTGACA+AGG + chr5_4:27740160-27740179 None:intergenic 30.0%
TGGATAATTTATCCAATAGC+AGG + chr5_4:27740202-27740221 None:intergenic 30.0%
! ACAATATGACTAAGGTTTTC+TGG + chr5_4:27740222-27740241 None:intergenic 30.0%
! TTCTGGAAACAATATGACTA+AGG + chr5_4:27740230-27740249 None:intergenic 30.0%
AAAGGTTAATACTCTCTTAC+AGG - chr5_4:27740349-27740368 Msa0846900:intron 30.0%
! GGTAGAAATTAATGGATGTT+TGG + chr5_4:27740590-27740609 None:intergenic 30.0%
!! ATTTTGGGGGTAGAAATTAA+TGG + chr5_4:27740598-27740617 None:intergenic 30.0%
!! CAGCATTGATAAGATTTCAT+TGG - chr5_4:27740638-27740657 Msa0846900:intron 30.0%
ATAAGATTTCATTGGATCTC+TGG - chr5_4:27740646-27740665 Msa0846900:intron 30.0%
TGCAGAAAAATGTGCTTAAA+AGG + chr5_4:27740932-27740951 None:intergenic 30.0%
! TTTTTCACTTAAACGGATCA+TGG + chr5_4:27741041-27741060 None:intergenic 30.0%
! GGGAAATACATTTTCTTAAC+TGG - chr5_4:27741069-27741088 Msa0846900:five_prime_UTR 30.0%
!! TGGATCTTGTTGTTTGAAAG+AGG + chr5_4:27737305-27737324 None:intergenic 35.0%
!! GAAAATCGAGCTTGTTGTAA+GGG + chr5_4:27737355-27737374 None:intergenic 35.0%
AGAAGAAGAAGAAATGGGAT+GGG + chr5_4:27737421-27737440 None:intergenic 35.0%
AAGAAGAAGAAGAAATGGGA+TGG + chr5_4:27737422-27737441 None:intergenic 35.0%
GGCAAAGAAGAAGAAGAAAT+GGG + chr5_4:27737426-27737445 None:intergenic 35.0%
AGGCAAAGAAGAAGAAGAAA+TGG + chr5_4:27737427-27737446 None:intergenic 35.0%
ATCAGAGAAAAACTCAAAGG+AGG + chr5_4:27737447-27737466 None:intergenic 35.0%
GAGATCAGAGAAAAACTCAA+AGG + chr5_4:27737450-27737469 None:intergenic 35.0%
GAACAAGCTGAAAGATATGA+AGG - chr5_4:27737551-27737570 Msa0846900:three_prime_UTR 35.0%
ATTTCAACGACGCAATCAAA+GGG + chr5_4:27738035-27738054 None:intergenic 35.0%
AATTTCAACGACGCAATCAA+AGG + chr5_4:27738036-27738055 None:intergenic 35.0%
! CTAATGATGGGAATTATGCT+TGG - chr5_4:27738126-27738145 Msa0846900:intron 35.0%
TTGGGTCTATAACATCACTT+TGG + chr5_4:27738168-27738187 None:intergenic 35.0%
GTGATGTTATAGACCCAAAT+TGG - chr5_4:27738170-27738189 Msa0846900:intron 35.0%
!! AATAATGGACTGGCCAATTT+GGG + chr5_4:27738186-27738205 None:intergenic 35.0%
!! TAATAATGGACTGGCCAATT+TGG + chr5_4:27738187-27738206 None:intergenic 35.0%
GGTTGAATGTATGAAGAAAG+TGG - chr5_4:27738348-27738367 Msa0846900:intron 35.0%
ACTTGATGTTGAACTAACTG+TGG - chr5_4:27738375-27738394 Msa0846900:intron 35.0%
! TTTTATATCCAACTGAGAGG+AGG + chr5_4:27738411-27738430 None:intergenic 35.0%
! CGTTTTTATATCCAACTGAG+AGG + chr5_4:27738414-27738433 None:intergenic 35.0%
! CAGAATATCACCACAGATTT+TGG + chr5_4:27738563-27738582 None:intergenic 35.0%
GAAGATAGCGATAAATCTGA+TGG + chr5_4:27738724-27738743 None:intergenic 35.0%
AGGTGGATAACAAATATGCA+AGG + chr5_4:27738865-27738884 None:intergenic 35.0%
!! TTGCATATTTGTTATCCACC+TGG - chr5_4:27738864-27738883 Msa0846900:intron 35.0%
GTAGGACTTAATCATGAAAC+GGG + chr5_4:27738900-27738919 None:intergenic 35.0%
TCCTACTATGAATGAGTCAT+TGG - chr5_4:27738914-27738933 Msa0846900:intron 35.0%
TCCAATGACTCATTCATAGT+AGG + chr5_4:27738918-27738937 None:intergenic 35.0%
ACAGTGAAGAACTCATGATA+AGG - chr5_4:27739137-27739156 Msa0846900:intron 35.0%
AGATTATGAACTCTCCTGAA+AGG - chr5_4:27739620-27739639 Msa0846900:intron 35.0%
TCTCCTGAAAGGTAAGTAAT+CGG - chr5_4:27739631-27739650 Msa0846900:intron 35.0%
! ATGGTGGTGATAAAACTTAC+AGG - chr5_4:27739706-27739725 Msa0846900:intron 35.0%
! TGGTGGTGATAAAACTTACA+GGG - chr5_4:27739707-27739726 Msa0846900:intron 35.0%
GATTAAAAATCTCGCATCTC+AGG + chr5_4:27739977-27739996 None:intergenic 35.0%
! GAGATGCGAGATTTTTAATC+TGG - chr5_4:27739977-27739996 Msa0846900:CDS 35.0%
CCCAACCTTGTCAAAAAATT+AGG - chr5_4:27740152-27740171 Msa0846900:intron 35.0%
TCATGAGAAGAAACTCATTC+TGG + chr5_4:27740247-27740266 None:intergenic 35.0%
! TTCTACTAGAGAGGTTCTAA+AGG - chr5_4:27740331-27740350 Msa0846900:intron 35.0%
TTAATACTCTCTTACAGGTG+AGG - chr5_4:27740354-27740373 Msa0846900:intron 35.0%
!! TTTGGCTTCTTCAGCTTTTA+TGG + chr5_4:27740383-27740402 None:intergenic 35.0%
!! GGTATGTGTAAGATTGGTTT+CGG - chr5_4:27740417-27740436 Msa0846900:intron 35.0%
AGATACATCACTACCGAATT+GGG + chr5_4:27740673-27740692 None:intergenic 35.0%
TAGATACATCACTACCGAAT+TGG + chr5_4:27740674-27740693 None:intergenic 35.0%
! ATCTAAGATACTCAGTGAAG+AGG - chr5_4:27740689-27740708 Msa0846900:intron 35.0%
! TCTAAGATACTCAGTGAAGA+GGG - chr5_4:27740690-27740709 Msa0846900:intron 35.0%
!! AGCTTTTCTTGCTATGGATT+TGG - chr5_4:27740722-27740741 Msa0846900:intron 35.0%
TGCATTCATCGAATCTGAAT+TGG - chr5_4:27740948-27740967 Msa0846900:five_prime_UTR 35.0%
!! TGGATCTTGTTGTTTGAAAG+AGG + chr5_4:27737305-27737324 None:intergenic 35.0%
!! GAAAATCGAGCTTGTTGTAA+GGG + chr5_4:27737355-27737374 None:intergenic 35.0%
AGAAGAAGAAGAAATGGGAT+GGG + chr5_4:27737421-27737440 None:intergenic 35.0%
AAGAAGAAGAAGAAATGGGA+TGG + chr5_4:27737422-27737441 None:intergenic 35.0%
GGCAAAGAAGAAGAAGAAAT+GGG + chr5_4:27737426-27737445 None:intergenic 35.0%
AGGCAAAGAAGAAGAAGAAA+TGG + chr5_4:27737427-27737446 None:intergenic 35.0%
ATCAGAGAAAAACTCAAAGG+AGG + chr5_4:27737447-27737466 None:intergenic 35.0%
GAGATCAGAGAAAAACTCAA+AGG + chr5_4:27737450-27737469 None:intergenic 35.0%
GAACAAGCTGAAAGATATGA+AGG - chr5_4:27737551-27737570 Msa0846900:three_prime_UTR 35.0%
ATTTCAACGACGCAATCAAA+GGG + chr5_4:27738035-27738054 None:intergenic 35.0%
AATTTCAACGACGCAATCAA+AGG + chr5_4:27738036-27738055 None:intergenic 35.0%
! CTAATGATGGGAATTATGCT+TGG - chr5_4:27738126-27738145 Msa0846900:intron 35.0%
TTGGGTCTATAACATCACTT+TGG + chr5_4:27738168-27738187 None:intergenic 35.0%
GTGATGTTATAGACCCAAAT+TGG - chr5_4:27738170-27738189 Msa0846900:intron 35.0%
!! AATAATGGACTGGCCAATTT+GGG + chr5_4:27738186-27738205 None:intergenic 35.0%
!! TAATAATGGACTGGCCAATT+TGG + chr5_4:27738187-27738206 None:intergenic 35.0%
GGTTGAATGTATGAAGAAAG+TGG - chr5_4:27738348-27738367 Msa0846900:intron 35.0%
ACTTGATGTTGAACTAACTG+TGG - chr5_4:27738375-27738394 Msa0846900:intron 35.0%
! TTTTATATCCAACTGAGAGG+AGG + chr5_4:27738411-27738430 None:intergenic 35.0%
! CGTTTTTATATCCAACTGAG+AGG + chr5_4:27738414-27738433 None:intergenic 35.0%
! CAGAATATCACCACAGATTT+TGG + chr5_4:27738563-27738582 None:intergenic 35.0%
GAAGATAGCGATAAATCTGA+TGG + chr5_4:27738724-27738743 None:intergenic 35.0%
AGGTGGATAACAAATATGCA+AGG + chr5_4:27738865-27738884 None:intergenic 35.0%
!! TTGCATATTTGTTATCCACC+TGG - chr5_4:27738864-27738883 Msa0846900:intron 35.0%
GTAGGACTTAATCATGAAAC+GGG + chr5_4:27738900-27738919 None:intergenic 35.0%
TCCTACTATGAATGAGTCAT+TGG - chr5_4:27738914-27738933 Msa0846900:intron 35.0%
TCCAATGACTCATTCATAGT+AGG + chr5_4:27738918-27738937 None:intergenic 35.0%
ACAGTGAAGAACTCATGATA+AGG - chr5_4:27739137-27739156 Msa0846900:intron 35.0%
AGATTATGAACTCTCCTGAA+AGG - chr5_4:27739620-27739639 Msa0846900:intron 35.0%
TCTCCTGAAAGGTAAGTAAT+CGG - chr5_4:27739631-27739650 Msa0846900:intron 35.0%
! ATGGTGGTGATAAAACTTAC+AGG - chr5_4:27739706-27739725 Msa0846900:intron 35.0%
! TGGTGGTGATAAAACTTACA+GGG - chr5_4:27739707-27739726 Msa0846900:intron 35.0%
GATTAAAAATCTCGCATCTC+AGG + chr5_4:27739977-27739996 None:intergenic 35.0%
! GAGATGCGAGATTTTTAATC+TGG - chr5_4:27739977-27739996 Msa0846900:CDS 35.0%
CCCAACCTTGTCAAAAAATT+AGG - chr5_4:27740152-27740171 Msa0846900:intron 35.0%
TCATGAGAAGAAACTCATTC+TGG + chr5_4:27740247-27740266 None:intergenic 35.0%
! TTCTACTAGAGAGGTTCTAA+AGG - chr5_4:27740331-27740350 Msa0846900:intron 35.0%
TTAATACTCTCTTACAGGTG+AGG - chr5_4:27740354-27740373 Msa0846900:intron 35.0%
!! TTTGGCTTCTTCAGCTTTTA+TGG + chr5_4:27740383-27740402 None:intergenic 35.0%
!! GGTATGTGTAAGATTGGTTT+CGG - chr5_4:27740417-27740436 Msa0846900:intron 35.0%
AGATACATCACTACCGAATT+GGG + chr5_4:27740673-27740692 None:intergenic 35.0%
TAGATACATCACTACCGAAT+TGG + chr5_4:27740674-27740693 None:intergenic 35.0%
! ATCTAAGATACTCAGTGAAG+AGG - chr5_4:27740689-27740708 Msa0846900:intron 35.0%
! TCTAAGATACTCAGTGAAGA+GGG - chr5_4:27740690-27740709 Msa0846900:intron 35.0%
!! AGCTTTTCTTGCTATGGATT+TGG - chr5_4:27740722-27740741 Msa0846900:intron 35.0%
TGCATTCATCGAATCTGAAT+TGG - chr5_4:27740948-27740967 Msa0846900:five_prime_UTR 35.0%
AAGACTGAAATCTCAACCGT+TGG + chr5_4:27737325-27737344 None:intergenic 40.0%
!! CGAAAATCGAGCTTGTTGTA+AGG + chr5_4:27737356-27737375 None:intergenic 40.0%
AGGGTGAAGTGGTTATATAG+TGG + chr5_4:27737381-27737400 None:intergenic 40.0%
AAGCTTGGCCAAGTAAACTT+GGG + chr5_4:27737528-27737547 None:intergenic 40.0%
AAAGCTTGGCCAAGTAAACT+TGG + chr5_4:27737529-27737548 None:intergenic 40.0%
CCAGTTTCCTTTCCTATCTA+AGG + chr5_4:27737898-27737917 None:intergenic 40.0%
CCTTAGATAGGAAAGGAAAC+TGG - chr5_4:27737895-27737914 Msa0846900:intron 40.0%
TTGAACTAACTGTGGAAGAG+AGG - chr5_4:27738383-27738402 Msa0846900:intron 40.0%
TATGTCCTCAATTGAGCAGA+AGG - chr5_4:27738465-27738484 Msa0846900:intron 40.0%
GATCAAGAGTTACTGCCAAA+AGG - chr5_4:27738522-27738541 Msa0846900:intron 40.0%
GACAATTATTGACCAGCATC+TGG - chr5_4:27738582-27738601 Msa0846900:CDS 40.0%
! TCAAATCCTTTCCGACTTGT+TGG - chr5_4:27738698-27738717 Msa0846900:intron 40.0%
AAATCTGATGGCCAACAAGT+CGG + chr5_4:27738712-27738731 None:intergenic 40.0%
CATAGAATCTGTATGACTGG+TGG - chr5_4:27738817-27738836 Msa0846900:CDS 40.0%
CTGAAACCCTATAACTTGAG+CGG + chr5_4:27738957-27738976 None:intergenic 40.0%
GGACTACGAAATATGGAAAC+TGG - chr5_4:27739158-27739177 Msa0846900:intron 40.0%
! CCTGCATCAAAAGAAGCATA+AGG + chr5_4:27739324-27739343 None:intergenic 40.0%
! CCTTATGCTTCTTTTGATGC+AGG - chr5_4:27739321-27739340 Msa0846900:intron 40.0%
! TGCTTCTTTTGATGCAGGAA+AGG - chr5_4:27739326-27739345 Msa0846900:intron 40.0%
GCAGGAAAGGTGATTATTTC+CGG - chr5_4:27739339-27739358 Msa0846900:intron 40.0%
TCTTGAACTCAGCAAGATAC+CGG + chr5_4:27739361-27739380 None:intergenic 40.0%
GACTGACCAAGAAAGAAAAG+AGG - chr5_4:27739379-27739398 Msa0846900:intron 40.0%
GAACCGATTACTTACCTTTC+AGG + chr5_4:27739637-27739656 None:intergenic 40.0%
! CAAAAGCTTGTTTGGCCAAA+TGG + chr5_4:27739737-27739756 None:intergenic 40.0%
CTTGTATGACTCTTCACTCA+AGG + chr5_4:27739784-27739803 None:intergenic 40.0%
CTTGAGTGAAGAGTCATACA+AGG - chr5_4:27739782-27739801 Msa0846900:CDS 40.0%
CAAAAAACTGGAGAGCTTGA+AGG + chr5_4:27739930-27739949 None:intergenic 40.0%
!! TGATTAGGGATTGGTCAACT+TGG + chr5_4:27740095-27740114 None:intergenic 40.0%
! TTTTTGACAAGGTTGGGGTA+AGG + chr5_4:27740149-27740168 None:intergenic 40.0%
TAAGAAACTGTGCCTGCTAT+TGG - chr5_4:27740187-27740206 Msa0846900:intron 40.0%
TAGAACCTCTCTAGTAGAAG+CGG + chr5_4:27740330-27740349 None:intergenic 40.0%
ACCAATCTTACACATACCTC+AGG + chr5_4:27740415-27740434 None:intergenic 40.0%
GATACATCACTACCGAATTG+GGG + chr5_4:27740672-27740691 None:intergenic 40.0%
CTAAGATACTCAGTGAAGAG+GGG - chr5_4:27740691-27740710 Msa0846900:intron 40.0%
! CTATGGATTTGGACTAGACA+AGG - chr5_4:27740733-27740752 Msa0846900:intron 40.0%
CTTCGGTTGGATAACTAAGA+GGG + chr5_4:27740788-27740807 None:intergenic 40.0%
!! TTCATGGCCGTTTTACTGAA+TGG - chr5_4:27740996-27741015 Msa0846900:five_prime_UTR 40.0%
AAGACTGAAATCTCAACCGT+TGG + chr5_4:27737325-27737344 None:intergenic 40.0%
!! CGAAAATCGAGCTTGTTGTA+AGG + chr5_4:27737356-27737375 None:intergenic 40.0%
AGGGTGAAGTGGTTATATAG+TGG + chr5_4:27737381-27737400 None:intergenic 40.0%
AAGCTTGGCCAAGTAAACTT+GGG + chr5_4:27737528-27737547 None:intergenic 40.0%
AAAGCTTGGCCAAGTAAACT+TGG + chr5_4:27737529-27737548 None:intergenic 40.0%
CCAGTTTCCTTTCCTATCTA+AGG + chr5_4:27737898-27737917 None:intergenic 40.0%
CCTTAGATAGGAAAGGAAAC+TGG - chr5_4:27737895-27737914 Msa0846900:intron 40.0%
TTGAACTAACTGTGGAAGAG+AGG - chr5_4:27738383-27738402 Msa0846900:intron 40.0%
TATGTCCTCAATTGAGCAGA+AGG - chr5_4:27738465-27738484 Msa0846900:intron 40.0%
GATCAAGAGTTACTGCCAAA+AGG - chr5_4:27738522-27738541 Msa0846900:intron 40.0%
GACAATTATTGACCAGCATC+TGG - chr5_4:27738582-27738601 Msa0846900:CDS 40.0%
! TCAAATCCTTTCCGACTTGT+TGG - chr5_4:27738698-27738717 Msa0846900:intron 40.0%
AAATCTGATGGCCAACAAGT+CGG + chr5_4:27738712-27738731 None:intergenic 40.0%
CATAGAATCTGTATGACTGG+TGG - chr5_4:27738817-27738836 Msa0846900:CDS 40.0%
CTGAAACCCTATAACTTGAG+CGG + chr5_4:27738957-27738976 None:intergenic 40.0%
GGACTACGAAATATGGAAAC+TGG - chr5_4:27739158-27739177 Msa0846900:intron 40.0%
! CCTGCATCAAAAGAAGCATA+AGG + chr5_4:27739324-27739343 None:intergenic 40.0%
! CCTTATGCTTCTTTTGATGC+AGG - chr5_4:27739321-27739340 Msa0846900:intron 40.0%
! TGCTTCTTTTGATGCAGGAA+AGG - chr5_4:27739326-27739345 Msa0846900:intron 40.0%
GCAGGAAAGGTGATTATTTC+CGG - chr5_4:27739339-27739358 Msa0846900:intron 40.0%
TCTTGAACTCAGCAAGATAC+CGG + chr5_4:27739361-27739380 None:intergenic 40.0%
GACTGACCAAGAAAGAAAAG+AGG - chr5_4:27739379-27739398 Msa0846900:intron 40.0%
GAACCGATTACTTACCTTTC+AGG + chr5_4:27739637-27739656 None:intergenic 40.0%
! CAAAAGCTTGTTTGGCCAAA+TGG + chr5_4:27739737-27739756 None:intergenic 40.0%
CTTGTATGACTCTTCACTCA+AGG + chr5_4:27739784-27739803 None:intergenic 40.0%
CTTGAGTGAAGAGTCATACA+AGG - chr5_4:27739782-27739801 Msa0846900:CDS 40.0%
CAAAAAACTGGAGAGCTTGA+AGG + chr5_4:27739930-27739949 None:intergenic 40.0%
!! TGATTAGGGATTGGTCAACT+TGG + chr5_4:27740095-27740114 None:intergenic 40.0%
! TTTTTGACAAGGTTGGGGTA+AGG + chr5_4:27740149-27740168 None:intergenic 40.0%
TAAGAAACTGTGCCTGCTAT+TGG - chr5_4:27740187-27740206 Msa0846900:intron 40.0%
TAGAACCTCTCTAGTAGAAG+CGG + chr5_4:27740330-27740349 None:intergenic 40.0%
ACCAATCTTACACATACCTC+AGG + chr5_4:27740415-27740434 None:intergenic 40.0%
GATACATCACTACCGAATTG+GGG + chr5_4:27740672-27740691 None:intergenic 40.0%
CTAAGATACTCAGTGAAGAG+GGG - chr5_4:27740691-27740710 Msa0846900:intron 40.0%
! CTATGGATTTGGACTAGACA+AGG - chr5_4:27740733-27740752 Msa0846900:intron 40.0%
CTTCGGTTGGATAACTAAGA+GGG + chr5_4:27740788-27740807 None:intergenic 40.0%
!! TTCATGGCCGTTTTACTGAA+TGG - chr5_4:27740996-27741015 Msa0846900:five_prime_UTR 40.0%
GAGAGAGACCCAAGTTTACT+TGG - chr5_4:27737517-27737536 Msa0846900:three_prime_UTR 45.0%
! TTCAGCTTGTTCGGAAAGCT+TGG + chr5_4:27737543-27737562 None:intergenic 45.0%
GAGTTACTGCCAAAAGGTTG+AGG - chr5_4:27738528-27738547 Msa0846900:intron 45.0%
TTACTGCCAAAAGGTTGAGG+AGG - chr5_4:27738531-27738550 Msa0846900:intron 45.0%
! AGAGTTCCTCCTCAACCTTT+TGG + chr5_4:27738540-27738559 None:intergenic 45.0%
GAGGAACTCTCCAAAATCTG+TGG - chr5_4:27738550-27738569 Msa0846900:CDS 45.0%
! GAAAACATTAGCTTCTGCCG+AGG + chr5_4:27738620-27738639 None:intergenic 45.0%
!! TTTCTGGCTCACACGTACTT+TGG - chr5_4:27739281-27739300 Msa0846900:intron 45.0%
! CAGCAGCCTCTTTTCTTTCT+TGG + chr5_4:27739388-27739407 None:intergenic 45.0%
AAGATCAGTGTTTGCAGTGG+CGG + chr5_4:27739542-27739561 None:intergenic 45.0%
TGGAAGATCAGTGTTTGCAG+TGG + chr5_4:27739545-27739564 None:intergenic 45.0%
!! AGACGGATTGGATGTGTTGA+TGG + chr5_4:27739565-27739584 None:intergenic 45.0%
TCAACACATCCAATCCGTCT+TGG - chr5_4:27739565-27739584 Msa0846900:intron 45.0%
AGTTGAGTGCAAGTCCAAGA+CGG + chr5_4:27739582-27739601 None:intergenic 45.0%
CGGTTCTCTCATACTTAGCA+TGG - chr5_4:27739651-27739670 Msa0846900:intron 45.0%
! GGCCAAACAAGCTTTTGATG+AGG - chr5_4:27739740-27739759 Msa0846900:intron 45.0%
! CGCCTCATCAAAAGCTTGTT+TGG + chr5_4:27739745-27739764 None:intergenic 45.0%
TTGGCATTCCATGTCCTAGT+GGG - chr5_4:27740048-27740067 Msa0846900:CDS 45.0%
! TGGTCAACTTGGTGGACAAT+GGG + chr5_4:27740084-27740103 None:intergenic 45.0%
! TTGGTCAACTTGGTGGACAA+TGG + chr5_4:27740085-27740104 None:intergenic 45.0%
!! TTAGGGATTGGTCAACTTGG+TGG + chr5_4:27740092-27740111 None:intergenic 45.0%
! GATCACTCTGGTGGTGATTA+GGG + chr5_4:27740109-27740128 None:intergenic 45.0%
! TGATCACTCTGGTGGTGATT+AGG + chr5_4:27740110-27740129 None:intergenic 45.0%
AATCGAGTGGATGATCACTC+TGG + chr5_4:27740121-27740140 None:intergenic 45.0%
GGGTAAGGATACAAATCGAG+TGG + chr5_4:27740134-27740153 None:intergenic 45.0%
TACAACCGCTTCTACTAGAG+AGG - chr5_4:27740322-27740341 Msa0846900:intron 45.0%
GCCTGAGGTATGTGTAAGAT+TGG - chr5_4:27740411-27740430 Msa0846900:intron 45.0%
! TGGATTTGGACTAGACAAGG+TGG - chr5_4:27740736-27740755 Msa0846900:intron 45.0%
GGACTAGACAAGGTGGAATT+TGG - chr5_4:27740743-27740762 Msa0846900:intron 45.0%
GCTTCGGTTGGATAACTAAG+AGG + chr5_4:27740789-27740808 None:intergenic 45.0%
CTTAGTTATCCAACCGAAGC+CGG - chr5_4:27740789-27740808 Msa0846900:intron 45.0%
AAAGACAGGTGCAGATCTTC+CGG + chr5_4:27740811-27740830 None:intergenic 45.0%
GAGAGAGACCCAAGTTTACT+TGG - chr5_4:27737517-27737536 Msa0846900:three_prime_UTR 45.0%
! TTCAGCTTGTTCGGAAAGCT+TGG + chr5_4:27737543-27737562 None:intergenic 45.0%
GAGTTACTGCCAAAAGGTTG+AGG - chr5_4:27738528-27738547 Msa0846900:intron 45.0%
TTACTGCCAAAAGGTTGAGG+AGG - chr5_4:27738531-27738550 Msa0846900:intron 45.0%
! AGAGTTCCTCCTCAACCTTT+TGG + chr5_4:27738540-27738559 None:intergenic 45.0%
GAGGAACTCTCCAAAATCTG+TGG - chr5_4:27738550-27738569 Msa0846900:CDS 45.0%
! GAAAACATTAGCTTCTGCCG+AGG + chr5_4:27738620-27738639 None:intergenic 45.0%
!! TTTCTGGCTCACACGTACTT+TGG - chr5_4:27739281-27739300 Msa0846900:intron 45.0%
! CAGCAGCCTCTTTTCTTTCT+TGG + chr5_4:27739388-27739407 None:intergenic 45.0%
AAGATCAGTGTTTGCAGTGG+CGG + chr5_4:27739542-27739561 None:intergenic 45.0%
TGGAAGATCAGTGTTTGCAG+TGG + chr5_4:27739545-27739564 None:intergenic 45.0%
!! AGACGGATTGGATGTGTTGA+TGG + chr5_4:27739565-27739584 None:intergenic 45.0%
TCAACACATCCAATCCGTCT+TGG - chr5_4:27739565-27739584 Msa0846900:intron 45.0%
AGTTGAGTGCAAGTCCAAGA+CGG + chr5_4:27739582-27739601 None:intergenic 45.0%
CGGTTCTCTCATACTTAGCA+TGG - chr5_4:27739651-27739670 Msa0846900:intron 45.0%
! GGCCAAACAAGCTTTTGATG+AGG - chr5_4:27739740-27739759 Msa0846900:intron 45.0%
! CGCCTCATCAAAAGCTTGTT+TGG + chr5_4:27739745-27739764 None:intergenic 45.0%
TTGGCATTCCATGTCCTAGT+GGG - chr5_4:27740048-27740067 Msa0846900:CDS 45.0%
! TGGTCAACTTGGTGGACAAT+GGG + chr5_4:27740084-27740103 None:intergenic 45.0%
! TTGGTCAACTTGGTGGACAA+TGG + chr5_4:27740085-27740104 None:intergenic 45.0%
!! TTAGGGATTGGTCAACTTGG+TGG + chr5_4:27740092-27740111 None:intergenic 45.0%
! GATCACTCTGGTGGTGATTA+GGG + chr5_4:27740109-27740128 None:intergenic 45.0%
! TGATCACTCTGGTGGTGATT+AGG + chr5_4:27740110-27740129 None:intergenic 45.0%
AATCGAGTGGATGATCACTC+TGG + chr5_4:27740121-27740140 None:intergenic 45.0%
GGGTAAGGATACAAATCGAG+TGG + chr5_4:27740134-27740153 None:intergenic 45.0%
TACAACCGCTTCTACTAGAG+AGG - chr5_4:27740322-27740341 Msa0846900:intron 45.0%
GCCTGAGGTATGTGTAAGAT+TGG - chr5_4:27740411-27740430 Msa0846900:intron 45.0%
! TGGATTTGGACTAGACAAGG+TGG - chr5_4:27740736-27740755 Msa0846900:intron 45.0%
GGACTAGACAAGGTGGAATT+TGG - chr5_4:27740743-27740762 Msa0846900:intron 45.0%
GCTTCGGTTGGATAACTAAG+AGG + chr5_4:27740789-27740808 None:intergenic 45.0%
CTTAGTTATCCAACCGAAGC+CGG - chr5_4:27740789-27740808 Msa0846900:intron 45.0%
AAAGACAGGTGCAGATCTTC+CGG + chr5_4:27740811-27740830 None:intergenic 45.0%
!!! TTAATTTTGTTATTTTTTAA+TGG - chr5_4:27737582-27737601 Msa0846900:three_prime_UTR 5.0%
!!! TAATTTTGTTATTTTTTAAT+GGG - chr5_4:27737583-27737602 Msa0846900:three_prime_UTR 5.0%
!!! TTAATTTTGTTATTTTTTAA+TGG - chr5_4:27737582-27737601 Msa0846900:three_prime_UTR 5.0%
!!! TAATTTTGTTATTTTTTAAT+GGG - chr5_4:27737583-27737602 Msa0846900:three_prime_UTR 5.0%
GGATGTGATGCGAGAGAGAA+GGG + chr5_4:27737400-27737419 None:intergenic 50.0%
GGTCTCTCTCTCTTTCTCAG+CGG + chr5_4:27737507-27737526 None:intergenic 50.0%
TTGGTGCACGAAGAGCTTCA+TGG - chr5_4:27738437-27738456 Msa0846900:intron 50.0%
GTCCTCAATTGAGCAGAAGG+AGG - chr5_4:27738468-27738487 Msa0846900:intron 50.0%
CTCCTCCTTCTGCTCAATTG+AGG + chr5_4:27738473-27738492 None:intergenic 50.0%
TGAGCAGAAGGAGGAGTCTA+AGG - chr5_4:27738477-27738496 Msa0846900:intron 50.0%
GAGCAGAAGGAGGAGTCTAA+GGG - chr5_4:27738478-27738497 Msa0846900:intron 50.0%
! AACATTAGCTTCTGCCGAGG+TGG + chr5_4:27738617-27738636 None:intergenic 50.0%
TGATGGCCAACAAGTCGGAA+AGG + chr5_4:27738707-27738726 None:intergenic 50.0%
GCAGTCACTGAAAGGATACG+AGG - chr5_4:27739409-27739428 Msa0846900:intron 50.0%
AGTGCAAGTCCAAGACGGAT+TGG + chr5_4:27739577-27739596 None:intergenic 50.0%
AACTTACAGGGCCTGCCATT+TGG - chr5_4:27739719-27739738 Msa0846900:intron 50.0%
! AGCTTGTTTGGCCAAATGGC+AGG + chr5_4:27739733-27739752 None:intergenic 50.0%
TGATGAGGCGATTGCAGAGT+TGG - chr5_4:27739755-27739774 Msa0846900:intron 50.0%
TGAGAGACAACCTGACTCTC+TGG - chr5_4:27739829-27739848 Msa0846900:CDS 50.0%
AATCAGAGGTCCAGAGAGTC+AGG + chr5_4:27739842-27739861 None:intergenic 50.0%
! ACCTCTGATTTGCCAGAGGA+TGG - chr5_4:27739852-27739871 Msa0846900:CDS 50.0%
TCCATCCTCTGGCAAATCAG+AGG + chr5_4:27739856-27739875 None:intergenic 50.0%
! TCTGATTTGCCAGAGGATGG+AGG - chr5_4:27739855-27739874 Msa0846900:CDS 50.0%
TTTGCCAGAGGATGGAGGTA+AGG - chr5_4:27739860-27739879 Msa0846900:CDS 50.0%
TTGCCAGAGGATGGAGGTAA+GGG - chr5_4:27739861-27739880 Msa0846900:CDS 50.0%
TATCCCTTACCTCCATCCTC+TGG + chr5_4:27739867-27739886 None:intergenic 50.0%
GTTGGCATTCCATGTCCTAG+TGG - chr5_4:27740047-27740066 Msa0846900:CDS 50.0%
TGGCATTCCATGTCCTAGTG+GGG - chr5_4:27740049-27740068 Msa0846900:CDS 50.0%
CATTTGTCCCCACTAGGACA+TGG + chr5_4:27740059-27740078 None:intergenic 50.0%
! CTCTGGTGGTGATTAGGGAT+TGG + chr5_4:27740104-27740123 None:intergenic 50.0%
TACACATACCTCAGGCTCAG+CGG + chr5_4:27740407-27740426 None:intergenic 50.0%
TTGGATCTCTGGCCCCAATT+CGG - chr5_4:27740657-27740676 Msa0846900:intron 50.0%
GGATGTGATGCGAGAGAGAA+GGG + chr5_4:27737400-27737419 None:intergenic 50.0%
GGTCTCTCTCTCTTTCTCAG+CGG + chr5_4:27737507-27737526 None:intergenic 50.0%
TTGGTGCACGAAGAGCTTCA+TGG - chr5_4:27738437-27738456 Msa0846900:intron 50.0%
GTCCTCAATTGAGCAGAAGG+AGG - chr5_4:27738468-27738487 Msa0846900:intron 50.0%
CTCCTCCTTCTGCTCAATTG+AGG + chr5_4:27738473-27738492 None:intergenic 50.0%
TGAGCAGAAGGAGGAGTCTA+AGG - chr5_4:27738477-27738496 Msa0846900:intron 50.0%
GAGCAGAAGGAGGAGTCTAA+GGG - chr5_4:27738478-27738497 Msa0846900:intron 50.0%
! AACATTAGCTTCTGCCGAGG+TGG + chr5_4:27738617-27738636 None:intergenic 50.0%
TGATGGCCAACAAGTCGGAA+AGG + chr5_4:27738707-27738726 None:intergenic 50.0%
GCAGTCACTGAAAGGATACG+AGG - chr5_4:27739409-27739428 Msa0846900:intron 50.0%
AGTGCAAGTCCAAGACGGAT+TGG + chr5_4:27739577-27739596 None:intergenic 50.0%
AACTTACAGGGCCTGCCATT+TGG - chr5_4:27739719-27739738 Msa0846900:intron 50.0%
! AGCTTGTTTGGCCAAATGGC+AGG + chr5_4:27739733-27739752 None:intergenic 50.0%
TGATGAGGCGATTGCAGAGT+TGG - chr5_4:27739755-27739774 Msa0846900:intron 50.0%
TGAGAGACAACCTGACTCTC+TGG - chr5_4:27739829-27739848 Msa0846900:CDS 50.0%
AATCAGAGGTCCAGAGAGTC+AGG + chr5_4:27739842-27739861 None:intergenic 50.0%
! ACCTCTGATTTGCCAGAGGA+TGG - chr5_4:27739852-27739871 Msa0846900:CDS 50.0%
TCCATCCTCTGGCAAATCAG+AGG + chr5_4:27739856-27739875 None:intergenic 50.0%
! TCTGATTTGCCAGAGGATGG+AGG - chr5_4:27739855-27739874 Msa0846900:CDS 50.0%
TTTGCCAGAGGATGGAGGTA+AGG - chr5_4:27739860-27739879 Msa0846900:CDS 50.0%
TTGCCAGAGGATGGAGGTAA+GGG - chr5_4:27739861-27739880 Msa0846900:CDS 50.0%
TATCCCTTACCTCCATCCTC+TGG + chr5_4:27739867-27739886 None:intergenic 50.0%
GTTGGCATTCCATGTCCTAG+TGG - chr5_4:27740047-27740066 Msa0846900:CDS 50.0%
TGGCATTCCATGTCCTAGTG+GGG - chr5_4:27740049-27740068 Msa0846900:CDS 50.0%
CATTTGTCCCCACTAGGACA+TGG + chr5_4:27740059-27740078 None:intergenic 50.0%
! CTCTGGTGGTGATTAGGGAT+TGG + chr5_4:27740104-27740123 None:intergenic 50.0%
TACACATACCTCAGGCTCAG+CGG + chr5_4:27740407-27740426 None:intergenic 50.0%
TTGGATCTCTGGCCCCAATT+CGG - chr5_4:27740657-27740676 Msa0846900:intron 50.0%
TGCGAGAGAGAAGGGTGAAG+TGG + chr5_4:27737392-27737411 None:intergenic 55.0%
GGGATGTGATGCGAGAGAGA+AGG + chr5_4:27737401-27737420 None:intergenic 55.0%
GAGAGGAACCTCCTCTCAGT+TGG - chr5_4:27738400-27738419 Msa0846900:intron 55.0%
TGGAAGCAGGAACCAGATGC+TGG + chr5_4:27738597-27738616 None:intergenic 55.0%
! TCTGGTTCCTGCTTCCACCT+CGG - chr5_4:27738600-27738619 Msa0846900:CDS 55.0%
GAAACGGGTGCTCATCTACC+AGG + chr5_4:27738885-27738904 None:intergenic 55.0%
GCTGCTGAGCAGTCACTGAA+AGG - chr5_4:27739401-27739420 Msa0846900:intron 55.0%
! CTGGACCTCTGATTTGCCAG+AGG - chr5_4:27739848-27739867 Msa0846900:CDS 55.0%
!! TGGGAGCATTTGTCCCCACT+AGG + chr5_4:27740065-27740084 None:intergenic 55.0%
CGAGTGGATGATCACTCTGG+TGG + chr5_4:27740118-27740137 None:intergenic 55.0%
ACACATACCTCAGGCTCAGC+GGG + chr5_4:27740406-27740425 None:intergenic 55.0%
AGGGCACGAGAGCTATGAAG+TGG + chr5_4:27740769-27740788 None:intergenic 55.0%
AGGTGCAGATCTTCCGGCTT+CGG + chr5_4:27740805-27740824 None:intergenic 55.0%
TGCGAGAGAGAAGGGTGAAG+TGG + chr5_4:27737392-27737411 None:intergenic 55.0%
GGGATGTGATGCGAGAGAGA+AGG + chr5_4:27737401-27737420 None:intergenic 55.0%
GAGAGGAACCTCCTCTCAGT+TGG - chr5_4:27738400-27738419 Msa0846900:intron 55.0%
TGGAAGCAGGAACCAGATGC+TGG + chr5_4:27738597-27738616 None:intergenic 55.0%
! TCTGGTTCCTGCTTCCACCT+CGG - chr5_4:27738600-27738619 Msa0846900:CDS 55.0%
GAAACGGGTGCTCATCTACC+AGG + chr5_4:27738885-27738904 None:intergenic 55.0%
GCTGCTGAGCAGTCACTGAA+AGG - chr5_4:27739401-27739420 Msa0846900:intron 55.0%
! CTGGACCTCTGATTTGCCAG+AGG - chr5_4:27739848-27739867 Msa0846900:CDS 55.0%
!! TGGGAGCATTTGTCCCCACT+AGG + chr5_4:27740065-27740084 None:intergenic 55.0%
CGAGTGGATGATCACTCTGG+TGG + chr5_4:27740118-27740137 None:intergenic 55.0%
ACACATACCTCAGGCTCAGC+GGG + chr5_4:27740406-27740425 None:intergenic 55.0%
AGGGCACGAGAGCTATGAAG+TGG + chr5_4:27740769-27740788 None:intergenic 55.0%
AGGTGCAGATCTTCCGGCTT+CGG + chr5_4:27740805-27740824 None:intergenic 55.0%
ACGGGTGCTCATCTACCAGG+TGG + chr5_4:27738882-27738901 None:intergenic 60.0%
! TACCTCAGGCTCAGCGGGTT+TGG + chr5_4:27740401-27740420 None:intergenic 60.0%
GCAGATCTTCCGGCTTCGGT+TGG + chr5_4:27740801-27740820 None:intergenic 60.0%
ACGGGTGCTCATCTACCAGG+TGG + chr5_4:27738882-27738901 None:intergenic 60.0%
! TACCTCAGGCTCAGCGGGTT+TGG + chr5_4:27740401-27740420 None:intergenic 60.0%
GCAGATCTTCCGGCTTCGGT+TGG + chr5_4:27740801-27740820 None:intergenic 60.0%
GCTTCTGCCGAGGTGGAAGC+AGG + chr5_4:27738610-27738629 None:intergenic 65.0%
AGCCAAACCCGCTGAGCCTG+AGG - chr5_4:27740396-27740415 Msa0846900:intron 65.0%
GCTTCTGCCGAGGTGGAAGC+AGG + chr5_4:27738610-27738629 None:intergenic 65.0%
AGCCAAACCCGCTGAGCCTG+AGG - chr5_4:27740396-27740415 Msa0846900:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 27737286 27741126 27737286 ID=Msa0846900;Name=Msa0846900
chr5_4 mRNA 27737286 27741126 27737286 ID=Msa0846900-mRNA-1;Parent=Msa0846900;Name=Msa0846900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=214|0.83|0.85|1|0.83|1|7|404|301
chr5_4 exon 27737286 27737771 27737286 ID=Msa0846900-mRNA-1:exon:10649;Parent=Msa0846900-mRNA-1
chr5_4 exon 27737945 27738041 27737945 ID=Msa0846900-mRNA-1:exon:10648;Parent=Msa0846900-mRNA-1
chr5_4 exon 27738536 27738684 27738536 ID=Msa0846900-mRNA-1:exon:10647;Parent=Msa0846900-mRNA-1
chr5_4 exon 27738771 27738880 27738771 ID=Msa0846900-mRNA-1:exon:10646;Parent=Msa0846900-mRNA-1
chr5_4 exon 27738982 27739069 27738982 ID=Msa0846900-mRNA-1:exon:10645;Parent=Msa0846900-mRNA-1
chr5_4 exon 27739762 27740068 27739762 ID=Msa0846900-mRNA-1:exon:10644;Parent=Msa0846900-mRNA-1
chr5_4 exon 27740840 27741126 27740840 ID=Msa0846900-mRNA-1:exon:10643;Parent=Msa0846900-mRNA-1
chr5_4 five_prime_UTR 27740913 27741126 27740913 ID=Msa0846900-mRNA-1:five_prime_utr;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27740840 27740912 27740840 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27739762 27740068 27739762 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27738982 27739069 27738982 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27738771 27738880 27738771 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27738536 27738684 27738536 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27737945 27738041 27737945 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 CDS 27737690 27737771 27737690 ID=Msa0846900-mRNA-1:cds;Parent=Msa0846900-mRNA-1
chr5_4 three_prime_UTR 27737286 27737689 27737286 ID=Msa0846900-mRNA-1:three_prime_utr;Parent=Msa0846900-mRNA-1
Gene Sequence

>Msa0846900

ATGTCCGCTGAGAAAGAGAGAGAGACCCAAGTTTACTTGGCCAAGCTTTCCGAACAAGCTGAAAGATATGAAGAAATGGTTGAATGTATGAAGAAAGTGGCAAAACTTGATGTTGAACTAACTGTGGAAGAGAGGAACCTCCTCTCAGTTGGATATAAAAACGTCATTGGTGCACGAAGAGCTTCATGGCGCATTATGTCCTCAATTGAGCAGAAGGAGGAGTCTAAGGGTAATGAACACAATGTTAAAATGATCAAGAGTTACTGCCAAAAGGTTGAGGAGGAACTCTCCAAAATCTGTGGTGATATTCTGACAATTATTGACCAGCATCTGGTTCCTGCTTCCACCTCGGCAGAAGCTAATGTTTTCTATCATAAGATGAAAGGTGATTATTTCCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGAAAAGAGGCTGCTGAGCAGTCACTGAAAGGATACGAGGCTGCTTCCGCCACTGCAAACACTGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCTGTCTTTTATTACGAGATTATGAACTCTCCTGAAAGGGCCTGCCATTTGGCCAAACAAGCTTTTGATGAGGCGATTGCAGAGTTGGATACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACCTCTGATTTGCCAGAGGATGGAGGTGAGGAGACCATAAAAGCTGAAGAAGCCAAACCCGCTGAGCCTGAGGTATGTGTAAGATTGGTTTCGGCTATATTTACATTTGTTTGTTTTCTGATCATTGATAAGATTTCATTGGATCTCTGGCCCCAATTCGGTAGTGATGTATCTAAGATACTCAGTGAAGAGGGGATTTTTTAA

Protein sequence

>Msa0846900

MSAEKERETQVYLAKLSEQAERYEEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKMIKSYCQKVEEELSKICGDILTIIDQHLVPASTSAEANVFYHKMKGDYFRYLAEFKTDQERKEAAEQSLKGYEAASATANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEETIKAEEAKPAEPEVCVRLVSAIFTFVCFLIIDKISLDLWPQFGSDVSKILSEEGIF*