Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0767280 | sp|Q9C5W6|14312_ARATH | 81.467 | 259 | 33 | 2 | 3 | 246 | 6 | 264 | 8.12e-153 | 429 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0767280 | G7JWT4 | 95.367 | 259 | 2 | 1 | 1 | 249 | 1 | 259 | 5.52e-179 | 501 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006840 | Msa0767280 | 0.840020 | 1.117821e-57 | -8.615850e-47 |
Msa0030070 | Msa0767280 | 0.834422 | 3.025116e-56 | -8.615850e-47 |
Msa0031080 | Msa0767280 | 0.811442 | 6.986494e-51 | -8.615850e-47 |
Msa0033610 | Msa0767280 | 0.829474 | 5.043654e-55 | -8.615850e-47 |
Msa0033640 | Msa0767280 | 0.819552 | 1.093813e-52 | -8.615850e-47 |
Msa0041910 | Msa0767280 | 0.834787 | 2.448724e-56 | -8.615850e-47 |
Msa0045620 | Msa0767280 | 0.844260 | 8.437971e-59 | -8.615850e-47 |
Msa0050150 | Msa0767280 | 0.805106 | 1.566896e-49 | -8.615850e-47 |
Msa0050530 | Msa0767280 | 0.875641 | 2.624516e-68 | -8.615850e-47 |
Msa0063190 | Msa0767280 | 0.814960 | 1.180335e-51 | -8.615850e-47 |
Msa0089540 | Msa0767280 | 0.800569 | 1.355429e-48 | -8.615850e-47 |
Msa0094180 | Msa0767280 | 0.808943 | 2.415416e-50 | -8.615850e-47 |
Msa0100600 | Msa0767280 | 0.861809 | 7.901775e-64 | -8.615850e-47 |
Msa0100890 | Msa0767280 | 0.861498 | 9.834337e-64 | -8.615850e-47 |
Msa0605520 | Msa0767280 | 0.822934 | 1.815765e-53 | -8.615850e-47 |
Msa0618840 | Msa0767280 | 0.827802 | 1.279265e-54 | -8.615850e-47 |
Msa0618990 | Msa0767280 | 0.853296 | 2.624693e-61 | -8.615850e-47 |
Msa0623310 | Msa0767280 | 0.823388 | 1.422498e-53 | -8.615850e-47 |
Msa0640800 | Msa0767280 | 0.816894 | 4.369821e-52 | -8.615850e-47 |
Msa0658120 | Msa0767280 | 0.802023 | 6.827974e-49 | -8.615850e-47 |
Msa0663290 | Msa0767280 | 0.806196 | 9.249164e-50 | -8.615850e-47 |
Msa0664070 | Msa0767280 | 0.810791 | 9.668221e-51 | -8.615850e-47 |
Msa0689830 | Msa0767280 | 0.853062 | 3.062249e-61 | -8.615850e-47 |
Msa0702970 | Msa0767280 | 0.808057 | 3.734569e-50 | -8.615850e-47 |
Msa0705140 | Msa0767280 | 0.829328 | 5.473538e-55 | -8.615850e-47 |
Msa0705180 | Msa0767280 | 0.812722 | 3.674127e-51 | -8.615850e-47 |
Msa0707260 | Msa0767280 | 0.829742 | 4.341451e-55 | -8.615850e-47 |
Msa0708980 | Msa0767280 | 0.826027 | 3.397171e-54 | -8.615850e-47 |
Msa0720280 | Msa0767280 | 0.809800 | 1.581902e-50 | -8.615850e-47 |
Msa0751720 | Msa0767280 | 0.818551 | 1.847584e-52 | -8.615850e-47 |
Msa0767280 | Msa0771910 | 0.837781 | 4.245784e-57 | -8.615850e-47 |
Msa0767280 | Msa0803140 | 0.810676 | 1.024030e-50 | -8.615850e-47 |
Msa0767280 | Msa0816230 | 0.803982 | 2.687392e-49 | -8.615850e-47 |
Msa0767280 | Msa0831820 | 0.831364 | 1.740997e-55 | -8.615850e-47 |
Msa0767280 | Msa0837680 | 0.811483 | 6.843777e-51 | -8.615850e-47 |
Msa0767280 | Msa0846900 | 0.931342 | 4.352108e-94 | -8.615850e-47 |
Msa0767280 | Msa0850600 | 0.829074 | 6.307047e-55 | -8.615850e-47 |
Msa0767280 | Msa0856610 | 0.817348 | 3.454252e-52 | -8.615850e-47 |
Msa0767280 | Msa0861440 | 0.808153 | 3.562172e-50 | -8.615850e-47 |
Msa0767280 | Msa0874730 | 0.821441 | 4.030692e-53 | -8.615850e-47 |
Msa0767280 | Msa0900090 | 0.807766 | 4.305902e-50 | -8.615850e-47 |
Msa0767280 | Msa0925330 | 0.810718 | 1.002530e-50 | -8.615850e-47 |
Msa0767280 | Msa0926310 | 0.852373 | 4.818157e-61 | -8.615850e-47 |
Msa0767280 | Msa0926760 | 0.821734 | 3.448495e-53 | -8.615850e-47 |
Msa0767280 | Msa0929700 | 0.824031 | 1.005869e-53 | -8.615850e-47 |
Msa0767280 | Msa0929900 | 0.804763 | 1.848229e-49 | -8.615850e-47 |
Msa0767280 | Msa0965470 | 0.801802 | 7.580923e-49 | -8.615850e-47 |
Msa0767280 | Msa0966120 | 0.807630 | 4.602326e-50 | -8.615850e-47 |
Msa0767280 | Msa0982960 | 0.802714 | 4.921887e-49 | -8.615850e-47 |
Msa0767280 | Msa1000780 | 0.855390 | 6.515310e-62 | -8.615850e-47 |
Msa0767280 | Msa1001620 | 0.837505 | 4.995310e-57 | -8.615850e-47 |
Msa0767280 | Msa1021560 | 0.807250 | 5.540850e-50 | -8.615850e-47 |
Msa0767280 | Msa1025200 | 0.815588 | 8.560947e-52 | -8.615850e-47 |
Msa0767280 | Msa1025220 | 0.813190 | 2.901858e-51 | -8.615850e-47 |
Msa0767280 | Msa1078080 | 0.822262 | 2.602896e-53 | -8.615850e-47 |
Msa0767280 | Msa1081110 | 0.813499 | 2.482229e-51 | -8.615850e-47 |
Msa0767280 | Msa1083630 | 0.845237 | 4.603231e-59 | -8.615850e-47 |
Msa0767280 | Msa1087840 | 0.802015 | 6.853892e-49 | -8.615850e-47 |
Msa0767280 | Msa1124210 | 0.833348 | 5.616891e-56 | -8.615850e-47 |
Msa0767280 | Msa1126690 | 0.818153 | 2.273749e-52 | -8.615850e-47 |
Msa0767280 | Msa1128620 | 0.833428 | 5.363692e-56 | -8.615850e-47 |
Msa0767280 | Msa1144990 | 0.822854 | 1.895391e-53 | -8.615850e-47 |
Msa0767280 | Msa1147560 | 0.806123 | 9.584062e-50 | -8.615850e-47 |
Msa0767280 | Msa1148930 | 0.818745 | 1.670073e-52 | -8.615850e-47 |
Msa0767280 | Msa1166670 | 0.834069 | 3.708850e-56 | -8.615850e-47 |
Msa0767280 | Msa1166910 | 0.816529 | 5.277599e-52 | -8.615850e-47 |
Msa0767280 | Msa1180840 | 0.802005 | 6.888484e-49 | -8.615850e-47 |
Msa0767280 | Msa1220580 | 0.846475 | 2.122444e-59 | -8.615850e-47 |
Msa0767280 | Msa1255850 | 0.807954 | 3.927073e-50 | -8.615850e-47 |
Msa0767280 | Msa1282300 | 0.810120 | 1.350024e-50 | -8.615850e-47 |
Msa0767280 | Msa1296090 | 0.817644 | 2.963437e-52 | -8.615850e-47 |
Msa0767280 | Msa1334560 | 0.846429 | 2.183759e-59 | -8.615850e-47 |
Msa0767280 | Msa1339230 | 0.844748 | 6.240158e-59 | -8.615850e-47 |
Msa0767280 | Msa1361680 | 0.828845 | 7.167520e-55 | -8.615850e-47 |
Msa0767280 | Msa1371800 | 0.835653 | 1.480581e-56 | -8.615850e-47 |
Msa0767280 | Msa1372030 | 0.812174 | 4.840294e-51 | -8.615850e-47 |
Msa0767280 | Msa1376310 | 0.836854 | 7.331446e-57 | -8.615850e-47 |
Msa0767280 | Msa1379940 | 0.803586 | 3.248538e-49 | -8.615850e-47 |
Msa0767280 | Msa1381330 | 0.837073 | 6.446898e-57 | -8.615850e-47 |
Msa0767280 | Msa1393560 | 0.802570 | 5.268638e-49 | -8.615850e-47 |
Msa0767280 | Msa1395050 | 0.814388 | 1.580416e-51 | -8.615850e-47 |
Msa0767280 | Msa1399190 | 0.822415 | 2.397543e-53 | -8.615850e-47 |
Msa0767280 | Msa1419900 | 0.801382 | 9.243269e-49 | -8.615850e-47 |
Msa0767280 | Msa1420830 | 0.832166 | 1.103805e-55 | -8.615850e-47 |
Msa0767280 | Msa1431520 | 0.848756 | 5.005132e-60 | -8.615850e-47 |
Msa0767280 | Msa1439730 | 0.801587 | 8.391150e-49 | -8.615850e-47 |
Msa0767280 | Msa1446510 | 0.805380 | 1.372845e-49 | -8.615850e-47 |
Msa0767280 | Msa1449160 | 0.800214 | 1.601066e-48 | -8.615850e-47 |
Msa0767280 | Msa1461260 | 0.817085 | 3.959866e-52 | -8.615850e-47 |
Msa0767280 | Msa1463430 | 0.824282 | 8.783887e-54 | -8.615850e-47 |
Msa0125590 | Msa0767280 | 0.850355 | 1.791497e-60 | -8.615850e-47 |
Msa0134580 | Msa0767280 | 0.808318 | 3.284739e-50 | -8.615850e-47 |
Msa0136330 | Msa0767280 | 0.827972 | 1.164090e-54 | -8.615850e-47 |
Msa0168380 | Msa0767280 | 0.832896 | 7.274904e-56 | -8.615850e-47 |
Msa0169710 | Msa0767280 | 0.817677 | 2.912575e-52 | -8.615850e-47 |
Msa0179040 | Msa0767280 | 0.826723 | 2.319875e-54 | -8.615850e-47 |
Msa0183840 | Msa0767280 | 0.811724 | 6.067832e-51 | -8.615850e-47 |
Msa0186180 | Msa0767280 | 0.816300 | 5.936197e-52 | -8.615850e-47 |
Msa0192300 | Msa0767280 | 0.819738 | 9.921593e-53 | -8.615850e-47 |
Msa0195030 | Msa0767280 | 0.812006 | 5.267495e-51 | -8.615850e-47 |
Msa0204970 | Msa0767280 | 0.821535 | 3.834549e-53 | -8.615850e-47 |
Msa0225800 | Msa0767280 | 0.810807 | 9.594850e-51 | -8.615850e-47 |
Msa0234040 | Msa0767280 | 0.806331 | 8.662542e-50 | -8.615850e-47 |
Msa0237180 | Msa0767280 | 0.822991 | 1.761415e-53 | -8.615850e-47 |
Msa0368920 | Msa0767280 | 0.823322 | 1.474439e-53 | -8.615850e-47 |
Msa0373170 | Msa0767280 | 0.803976 | 2.695499e-49 | -8.615850e-47 |
Msa0382230 | Msa0767280 | 0.809240 | 2.086105e-50 | -8.615850e-47 |
Msa0383940 | Msa0767280 | 0.809877 | 1.522394e-50 | -8.615850e-47 |
Msa0385030 | Msa0767280 | 0.804667 | 1.935317e-49 | -8.615850e-47 |
Msa0416210 | Msa0767280 | 0.877311 | 6.957879e-69 | -8.615850e-47 |
Msa0429970 | Msa0767280 | 0.801126 | 1.042934e-48 | -8.615850e-47 |
Msa0433630 | Msa0767280 | 0.859661 | 3.544671e-63 | -8.615850e-47 |
Msa0434360 | Msa0767280 | 0.807285 | 5.445393e-50 | -8.615850e-47 |
Msa0450150 | Msa0767280 | 0.817908 | 2.583783e-52 | -8.615850e-47 |
Msa0467690 | Msa0767280 | 0.801611 | 8.298903e-49 | -8.615850e-47 |
Msa0477480 | Msa0767280 | 0.813737 | 2.200123e-51 | -8.615850e-47 |
Msa0249870 | Msa0767280 | 0.821032 | 5.009249e-53 | -8.615850e-47 |
Msa0260570 | Msa0767280 | 0.808864 | 2.511046e-50 | -8.615850e-47 |
Msa0281540 | Msa0767280 | 0.817261 | 3.614416e-52 | -8.615850e-47 |
Msa0288400 | Msa0767280 | 0.801249 | 9.844833e-49 | -8.615850e-47 |
Msa0301250 | Msa0767280 | 0.807836 | 4.161044e-50 | -8.615850e-47 |
Msa0308260 | Msa0767280 | 0.811724 | 6.067180e-51 | -8.615850e-47 |
Msa0313060 | Msa0767280 | 0.824205 | 9.156581e-54 | -8.615850e-47 |
Msa0315660 | Msa0767280 | 0.825364 | 4.881209e-54 | -8.615850e-47 |
Msa0508430 | Msa0767280 | 0.826464 | 2.675043e-54 | -8.615850e-47 |
Msa0514020 | Msa0767280 | 0.821126 | 4.765507e-53 | -8.615850e-47 |
Msa0519770 | Msa0767280 | 0.803337 | 3.657954e-49 | -8.615850e-47 |
Msa0520680 | Msa0767280 | 0.814184 | 1.753180e-51 | -8.615850e-47 |
Msa0521510 | Msa0767280 | 0.857290 | 1.805834e-62 | -8.615850e-47 |
Msa0521530 | Msa0767280 | 0.830524 | 2.798033e-55 | -8.615850e-47 |
Msa0544410 | Msa0767280 | 0.803370 | 3.600951e-49 | -8.615850e-47 |
Msa0566460 | Msa0767280 | 0.808805 | 2.585703e-50 | -8.615850e-47 |
Msa0572360 | Msa0767280 | 0.800485 | 1.409636e-48 | -8.615850e-47 |
Msa0572830 | Msa0767280 | 0.848872 | 4.646501e-60 | -8.615850e-47 |
Msa0573550 | Msa0767280 | 0.851368 | 9.290463e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0767280 | MtrunA17_Chr5g0418971 | 95.367 | 259 | 2 | 1 | 1 | 249 | 1 | 259 | 0.0 | 501 |
Msa0767280 | MtrunA17_Chr2g0325591 | 73.896 | 249 | 54 | 2 | 1 | 239 | 1 | 248 | 5.37e-137 | 385 |
Msa0767280 | MtrunA17_Chr4g0043141 | 78.838 | 241 | 22 | 2 | 26 | 237 | 1 | 241 | 3.02e-136 | 383 |
Msa0767280 | MtrunA17_Chr8g0379011 | 74.897 | 243 | 51 | 1 | 1 | 233 | 1 | 243 | 5.79e-136 | 382 |
Msa0767280 | MtrunA17_Chr2g0316011 | 71.371 | 248 | 61 | 1 | 2 | 239 | 3 | 250 | 8.83e-132 | 372 |
Msa0767280 | MtrunA17_Chr2g0283791 | 73.663 | 243 | 52 | 3 | 11 | 243 | 9 | 249 | 1.27e-129 | 367 |
Msa0767280 | MtrunA17_Chr3g0132301 | 69.261 | 257 | 66 | 4 | 2 | 246 | 3 | 258 | 8.94e-121 | 344 |
Msa0767280 | MtrunA17_Chr5g0426551 | 67.059 | 255 | 69 | 3 | 2 | 244 | 3 | 254 | 2.05e-117 | 336 |
Msa0767280 | MtrunA17_Chr3g0133161 | 64.681 | 235 | 70 | 2 | 7 | 228 | 11 | 245 | 1.49e-106 | 308 |
Msa0767280 | MtrunA17_Chr1g0164601 | 50.213 | 235 | 99 | 4 | 7 | 227 | 11 | 241 | 1.37e-69 | 214 |
Msa0767280 | MtrunA17_Chr3g0082111 | 49.787 | 235 | 100 | 4 | 7 | 227 | 41 | 271 | 1.83e-68 | 213 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0767280 | AT1G26480.1 | 81.467 | 259 | 33 | 2 | 3 | 246 | 6 | 264 | 8.26e-154 | 429 |
Msa0767280 | AT1G34760.1 | 78.189 | 243 | 42 | 2 | 4 | 236 | 2 | 243 | 2.39e-138 | 389 |
Msa0767280 | AT1G34760.2 | 78.189 | 243 | 42 | 2 | 4 | 236 | 2 | 243 | 2.89e-138 | 389 |
Msa0767280 | AT2G42590.3 | 72.266 | 256 | 60 | 2 | 1 | 245 | 1 | 256 | 4.27e-134 | 379 |
Msa0767280 | AT2G42590.1 | 72.266 | 256 | 60 | 2 | 1 | 245 | 1 | 256 | 5.45e-134 | 378 |
Msa0767280 | AT2G42590.2 | 71.765 | 255 | 62 | 1 | 1 | 245 | 1 | 255 | 1.07e-132 | 375 |
Msa0767280 | AT1G22300.2 | 73.200 | 250 | 57 | 1 | 4 | 243 | 2 | 251 | 2.67e-129 | 366 |
Msa0767280 | AT1G22300.1 | 73.200 | 250 | 57 | 1 | 4 | 243 | 2 | 251 | 2.91e-129 | 366 |
Msa0767280 | AT1G22300.3 | 75.000 | 240 | 50 | 1 | 4 | 233 | 2 | 241 | 4.62e-128 | 363 |
Msa0767280 | AT1G35160.1 | 71.032 | 252 | 61 | 3 | 7 | 246 | 11 | 262 | 4.09e-121 | 346 |
Msa0767280 | AT3G02520.1 | 69.767 | 258 | 60 | 4 | 7 | 246 | 5 | 262 | 2.59e-120 | 344 |
Msa0767280 | AT3G02520.2 | 69.767 | 258 | 60 | 4 | 7 | 246 | 5 | 262 | 2.59e-120 | 344 |
Msa0767280 | AT5G38480.1 | 69.444 | 252 | 65 | 3 | 7 | 246 | 4 | 255 | 3.17e-120 | 343 |
Msa0767280 | AT1G78300.1 | 68.235 | 255 | 69 | 3 | 7 | 249 | 5 | 259 | 2.91e-119 | 341 |
Msa0767280 | AT5G38480.3 | 70.800 | 250 | 58 | 5 | 7 | 244 | 4 | 250 | 1.59e-118 | 339 |
Msa0767280 | AT5G38480.2 | 70.800 | 250 | 58 | 5 | 7 | 244 | 4 | 250 | 1.59e-118 | 339 |
Msa0767280 | AT1G35160.2 | 73.504 | 234 | 50 | 3 | 7 | 228 | 11 | 244 | 4.57e-117 | 337 |
Msa0767280 | AT4G09000.1 | 69.512 | 246 | 63 | 3 | 2 | 235 | 5 | 250 | 5.28e-117 | 335 |
Msa0767280 | AT4G09000.2 | 71.429 | 238 | 56 | 3 | 3 | 228 | 6 | 243 | 9.11e-115 | 332 |
Msa0767280 | AT5G16050.1 | 66.534 | 251 | 72 | 2 | 1 | 239 | 1 | 251 | 2.87e-113 | 326 |
Msa0767280 | AT5G16050.2 | 66.534 | 251 | 72 | 2 | 1 | 239 | 1 | 251 | 2.87e-113 | 326 |
Msa0767280 | AT5G65430.1 | 64.372 | 247 | 75 | 2 | 1 | 234 | 1 | 247 | 1.68e-108 | 313 |
Msa0767280 | AT5G65430.2 | 64.754 | 244 | 73 | 2 | 1 | 231 | 1 | 244 | 2.22e-108 | 313 |
Msa0767280 | AT5G65430.3 | 65.145 | 241 | 71 | 2 | 1 | 228 | 1 | 241 | 2.25e-107 | 311 |
Msa0767280 | AT5G10450.1 | 63.786 | 243 | 75 | 3 | 1 | 230 | 1 | 243 | 2.57e-106 | 308 |
Msa0767280 | AT5G10450.2 | 63.525 | 244 | 76 | 3 | 1 | 231 | 1 | 244 | 2.59e-106 | 308 |
Msa0767280 | AT5G10450.3 | 63.900 | 241 | 74 | 3 | 1 | 228 | 1 | 241 | 1.60e-105 | 306 |
Msa0767280 | AT5G10450.4 | 63.900 | 241 | 74 | 3 | 1 | 228 | 1 | 241 | 4.20e-105 | 305 |
Msa0767280 | AT1G78220.1 | 50.855 | 234 | 104 | 3 | 4 | 226 | 2 | 235 | 5.78e-79 | 238 |
Msa0767280 | AT1G22290.2 | 47.685 | 216 | 79 | 6 | 4 | 204 | 2 | 198 | 3.86e-54 | 174 |
Msa0767280 | AT1G22290.1 | 47.418 | 213 | 78 | 6 | 4 | 201 | 2 | 195 | 1.01e-53 | 172 |
Msa0767280 | AT2G10450.1 | 59.574 | 47 | 19 | 0 | 194 | 240 | 16 | 62 | 2.30e-12 | 61.6 |
Find 91 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATCGATTGCTTACCTTTC+AGG | 0.105745 | 5_2:-30280900 | None:intergenic |
CAGAATGTCACCACAGATTT+TGG | 0.117398 | 5_2:-30279809 | None:intergenic |
TTTGGCTTCTTCAGCTTTAA+TGG | 0.191335 | 5_2:-30281643 | None:intergenic |
GGACTAGACAAGGTGGAATT+TGG | 0.236275 | 5_2:+30282011 | Msa0767280:three_prime_UTR |
TGAGCAGAAGGAGGAGTCTA+AGG | 0.249783 | 5_2:+30279726 | Msa0767280:CDS |
GCAGGAAAGGTGATTATTTC+CGG | 0.278329 | 5_2:+30280605 | Msa0767280:intron |
TGCCTCATCAAAAGCTTGTT+TGG | 0.327258 | 5_2:-30281008 | None:intergenic |
TAGATACATCACTACCGAAT+TGG | 0.327415 | 5_2:-30281939 | None:intergenic |
AGGCAAAGAAGAAGAAGAAA+TGG | 0.328933 | 5_2:-30278653 | None:intergenic |
TACCTCAGGCTCAGCGGGTT+TGG | 0.338393 | 5_2:-30281661 | None:intergenic |
CAAAAGCTTGTTTGGCCAAA+TGG | 0.349323 | 5_2:-30281000 | None:intergenic |
CAGCATTGATAAGATTTCAT+TGG | 0.357814 | 5_2:+30281906 | Msa0767280:intron |
ATAAGATTTCATTGGATCTC+TGG | 0.360076 | 5_2:+30281914 | Msa0767280:exon |
AACTTACAGGGCCTGCCATT+TGG | 0.370260 | 5_2:+30280985 | Msa0767280:intron |
AGATACATCACTACCGAATT+GGG | 0.372560 | 5_2:-30281938 | None:intergenic |
GAGAGAGACCCAAGTTTACT+TGG | 0.378465 | 5_2:+30278747 | Msa0767280:CDS |
AGGTGCAGATCTTCCGGCTT+CGG | 0.381800 | 5_2:-30282070 | None:intergenic |
GACAATTATTGACCAGCATC+TGG | 0.387445 | 5_2:+30279831 | Msa0767280:CDS |
TGCATTCATCGAGTCTGAAT+TGG | 0.390401 | 5_2:+30282222 | Msa0767280:three_prime_UTR |
AATCAGAGGTCCAGAGAGTC+AGG | 0.404705 | 5_2:-30281105 | None:intergenic |
TTCAGCTTGTTCAGAAAGCT+TGG | 0.414542 | 5_2:-30278770 | None:intergenic |
AAAGCTTGGCCAAGTAAACT+TGG | 0.417000 | 5_2:-30278756 | None:intergenic |
TCACTTTACTTAGAAACATA+AGG | 0.424485 | 5_2:-30282150 | None:intergenic |
TGATGAGGCAATTGCAGAGT+TGG | 0.440632 | 5_2:+30281021 | Msa0767280:CDS |
TGAGAGACAACCTGACTCTC+TGG | 0.448857 | 5_2:+30281095 | Msa0767280:CDS |
CGAAAATCGAGCTTGTTGTA+AGG | 0.449290 | 5_2:-30278582 | None:intergenic |
AGCTTGTTTGGCCAAATGGC+AGG | 0.464126 | 5_2:-30280996 | None:intergenic |
AAAGACAGGTGCAGATCTTC+CGG | 0.468481 | 5_2:-30282076 | None:intergenic |
AATAAATAAATAAGTTTGAA+GGG | 0.472994 | 5_2:-30282120 | None:intergenic |
AAATAAATAAATAAGTTTGA+AGG | 0.475285 | 5_2:-30282121 | None:intergenic |
GGCAAAGAAGAAGAAGAAAT+GGG | 0.475683 | 5_2:-30278652 | None:intergenic |
AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 5_2:-30280828 | None:intergenic |
TCTAAGATACTCAGTGAAGA+GGG | 0.486900 | 5_2:+30281958 | Msa0767280:three_prime_UTR |
GCTTCGGTTGGATAACTAAG+AGG | 0.493581 | 5_2:-30282054 | None:intergenic |
GCTTCTGCCGAGGTGGAAGC+AGG | 0.494681 | 5_2:-30279856 | None:intergenic |
GAACAAGCTGAAAGATATGA+AGG | 0.498122 | 5_2:+30278781 | Msa0767280:CDS |
TGGATCTTGTTGTTTGAAAG+AGG | 0.501197 | 5_2:-30278531 | None:intergenic |
ATACATACCTCAGGCTCAGC+GGG | 0.501637 | 5_2:-30281666 | None:intergenic |
ACCTCTGATTTGCCAGAGGA+TGG | 0.501755 | 5_2:+30281118 | Msa0767280:CDS |
CTTAGTTATCCAACCGAAGC+CGG | 0.505221 | 5_2:+30282057 | Msa0767280:three_prime_UTR |
TTGGATCTCTGGCCCCAATT+CGG | 0.506761 | 5_2:+30281925 | Msa0767280:three_prime_UTR |
GCAGATCTTCCGGCTTCGGT+TGG | 0.512754 | 5_2:-30282066 | None:intergenic |
GAGAGGAACCTCCTCTCTGT+TGG | 0.523318 | 5_2:+30279649 | Msa0767280:CDS |
TCTTGAACTCAGCAAGATAC+CGG | 0.525675 | 5_2:-30280624 | None:intergenic |
TTGGTGCACGAAGAGCTTCA+TGG | 0.527662 | 5_2:+30279686 | Msa0767280:CDS |
CTCCTCCTTCTGCTCAATTG+AGG | 0.527914 | 5_2:-30279719 | None:intergenic |
TATCCCTTACCTCCATCCTC+TGG | 0.533069 | 5_2:-30281130 | None:intergenic |
TGGAAGCAGGAACCAGATGC+TGG | 0.540094 | 5_2:-30279843 | None:intergenic |
GGATGTGATGCGAGAGAGAA+GGG | 0.540129 | 5_2:-30278626 | None:intergenic |
TCAACACATCCAATCCGTCT+TGG | 0.541520 | 5_2:+30280831 | Msa0767280:CDS |
AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 5_2:-30280840 | None:intergenic |
AAGACTGAAATCTCAACCGT+TGG | 0.554013 | 5_2:-30278551 | None:intergenic |
AAGATCAGTGTTTGCAGTGG+CGG | 0.557206 | 5_2:-30280805 | None:intergenic |
AAGAAGAAGAAGAAATGGGA+TGG | 0.564884 | 5_2:-30278648 | None:intergenic |
TATGTCCTCAATTGAGCAGA+AGG | 0.567548 | 5_2:+30279714 | Msa0767280:CDS |
GAAAATCGAGCTTGTTGTAA+GGG | 0.568605 | 5_2:-30278581 | None:intergenic |
AGAAGAAGAAGAAATGGGAT+GGG | 0.571812 | 5_2:-30278647 | None:intergenic |
CTATGGATTTGGACTAGACA+AGG | 0.572676 | 5_2:+30282001 | Msa0767280:three_prime_UTR |
GACTGACCAAGAAAGAAAAG+AGG | 0.574308 | 5_2:+30280645 | Msa0767280:CDS |
AACATTAGCTTCTGCCGAGG+TGG | 0.575120 | 5_2:-30279863 | None:intergenic |
AGCCAAACCCGCTGAGCCTG+AGG | 0.586083 | 5_2:+30281659 | Msa0767280:CDS |
CTTGAGTGAAGAGTCGTACA+AGG | 0.586539 | 5_2:+30281048 | Msa0767280:CDS |
TTGAACTAACTGTGGAAGAG+AGG | 0.589747 | 5_2:+30279632 | Msa0767280:CDS |
GAGCAGAAGGAGGAGTCTAA+GGG | 0.589752 | 5_2:+30279727 | Msa0767280:CDS |
ATCTAAGATACTCAGTGAAG+AGG | 0.591608 | 5_2:+30281957 | Msa0767280:three_prime_UTR |
CTGGACCTCTGATTTGCCAG+AGG | 0.595427 | 5_2:+30281114 | Msa0767280:CDS |
GGTTGAATGTATGAAGAAAG+TGG | 0.595766 | 5_2:+30279597 | Msa0767280:CDS |
GGGATGTGATGCGAGAGAGA+AGG | 0.597278 | 5_2:-30278627 | None:intergenic |
GCTGCTGATCAGTCACTGAA+AGG | 0.600437 | 5_2:+30280667 | Msa0767280:CDS |
CTTCGGTTGGATAACTAAGA+GGG | 0.603101 | 5_2:-30282053 | None:intergenic |
AGATTATGAACTCTCCTGAA+AGG | 0.605075 | 5_2:+30280886 | Msa0767280:CDS |
CTTGTACGACTCTTCACTCA+AGG | 0.608037 | 5_2:-30281047 | None:intergenic |
AAGCTTGGCCAAGTAAACTT+GGG | 0.611139 | 5_2:-30278755 | None:intergenic |
TCCATCCTCTGGCAAATCAG+AGG | 0.621846 | 5_2:-30281119 | None:intergenic |
GATACATCACTACCGAATTG+GGG | 0.638690 | 5_2:-30281937 | None:intergenic |
GAGGAACTCTCCAAAATCTG+TGG | 0.639940 | 5_2:+30279799 | Msa0767280:CDS |
AGGGTGAAGTGATTATATAG+TGG | 0.644110 | 5_2:-30278607 | None:intergenic |
TTTCAAACAACAAGATCCAA+CGG | 0.644319 | 5_2:+30278535 | Msa0767280:five_prime_UTR |
TCTGATTTGCCAGAGGATGG+AGG | 0.645454 | 5_2:+30281121 | Msa0767280:CDS |
ACTTGATGTTGAACTAACTG+TGG | 0.647498 | 5_2:+30279624 | Msa0767280:CDS |
AGGGCACGAGAGCTATGAAG+TGG | 0.649523 | 5_2:-30282034 | None:intergenic |
AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 5_2:-30280845 | None:intergenic |
GTCCTCAATTGAGCAGAAGG+AGG | 0.654997 | 5_2:+30279717 | Msa0767280:CDS |
CTAAGATACTCAGTGAAGAG+GGG | 0.671550 | 5_2:+30281959 | Msa0767280:three_prime_UTR |
GAAAACATTAGCTTCTGCCG+AGG | 0.676043 | 5_2:-30279866 | None:intergenic |
TCTGGTTCCTGCTTCCACCT+CGG | 0.676873 | 5_2:+30279849 | Msa0767280:CDS |
TATACATACCTCAGGCTCAG+CGG | 0.690490 | 5_2:-30281667 | None:intergenic |
TGGATTTGGACTAGACAAGG+TGG | 0.693750 | 5_2:+30282004 | Msa0767280:three_prime_UTR |
TTACTGCCAAAAGGTCGAGG+AGG | 0.701575 | 5_2:+30279780 | Msa0767280:intron |
TGGAAGATCAGTGTTTGCAG+TGG | 0.713574 | 5_2:-30280808 | None:intergenic |
TCAGTCACTGAAAGGATACG+AGG | 0.742084 | 5_2:+30280675 | Msa0767280:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATTTTATTTTAATTT+TGG | + | chr5_2:30279031-30279050 | Msa0767280:intron | 0.0% |
!!! | TTTTTGTTGTTTTTTTTAAT+TGG | + | chr5_2:30278833-30278852 | Msa0767280:intron | 10.0% |
!!! | TTTTTTGCTTTTAAAAATTA+GGG | + | chr5_2:30281209-30281228 | Msa0767280:intron | 10.0% |
!! | AATAAATAAATAAGTTTGAA+GGG | - | chr5_2:30282123-30282142 | None:intergenic | 10.0% |
!! | AAATAAATAAATAAGTTTGA+AGG | - | chr5_2:30282124-30282143 | None:intergenic | 10.0% |
!!! | AAAGATTTGATTTTTAGATT+TGG | + | chr5_2:30278946-30278965 | Msa0767280:intron | 15.0% |
!!! | AAGATTTGATTTTTAGATTT+GGG | + | chr5_2:30278947-30278966 | Msa0767280:intron | 15.0% |
!! | AATATGTTATCTAAAAATGT+TGG | + | chr5_2:30279193-30279212 | Msa0767280:intron | 15.0% |
!! | TGTACATTCATAATAAATTA+TGG | + | chr5_2:30279242-30279261 | Msa0767280:intron | 15.0% |
!! | AAAAATTACGTGTTTAATAA+TGG | - | chr5_2:30279450-30279469 | None:intergenic | 15.0% |
!!! | AAATTATACAATTTTCAACA+TGG | - | chr5_2:30279526-30279545 | None:intergenic | 15.0% |
!!! | CATTAATAAATTATTTCTGA+TGG | + | chr5_2:30280723-30280742 | Msa0767280:intron | 15.0% |
!!! | AATTTTTAAAAGCAAAAAAC+TGG | - | chr5_2:30281208-30281227 | None:intergenic | 15.0% |
!!! | GTTTTTTGCTTTTAAAAATT+AGG | + | chr5_2:30281208-30281227 | Msa0767280:intron | 15.0% |
!! | GTATAGATATATATATTGTT+GGG | + | chr5_2:30281290-30281309 | Msa0767280:intron | 15.0% |
!!! | AAATTCTTTTAAGTGAAAAA+AGG | + | chr5_2:30281796-30281815 | Msa0767280:intron | 15.0% |
!!! | AATTCTTTTAAGTGAAAAAA+GGG | + | chr5_2:30281797-30281816 | Msa0767280:intron | 15.0% |
!!! | AAAACATAATGTCAAATTTT+GGG | - | chr5_2:30281884-30281903 | None:intergenic | 15.0% |
!!! | AAAAACATAATGTCAAATTT+TGG | - | chr5_2:30281885-30281904 | None:intergenic | 15.0% |
!!! | GATTAAAATGTTTGTTTTAA+TGG | + | chr5_2:30282252-30282271 | Msa0767280:three_prime_UTR | 15.0% |
!! | ATCTTCTAAATTGAGAAATT+TGG | + | chr5_2:30279167-30279186 | Msa0767280:intron | 20.0% |
!! | ATAATAAATTATGGATGTGT+TGG | + | chr5_2:30279251-30279270 | Msa0767280:intron | 20.0% |
!! | ATTGAACAATTCACTTTAAA+AGG | - | chr5_2:30279324-30279343 | None:intergenic | 20.0% |
!! | AAAATACTATGTCTACTAAA+AGG | - | chr5_2:30280017-30280036 | None:intergenic | 20.0% |
!! | AGATATAGAAACTACATTAT+AGG | + | chr5_2:30280293-30280312 | Msa0767280:intron | 20.0% |
!! | GGTATAGATATATATATTGT+TGG | + | chr5_2:30281289-30281308 | Msa0767280:intron | 20.0% |
!!! | GTAATTAAGCTTTTGTTATT+TGG | + | chr5_2:30281560-30281579 | Msa0767280:intron | 20.0% |
!! | TTACTATAGATCTATAACTA+TGG | - | chr5_2:30281751-30281770 | None:intergenic | 20.0% |
!!! | AAACATAATGTCAAATTTTG+GGG | - | chr5_2:30281883-30281902 | None:intergenic | 20.0% |
!!! | TCTGTTTTTTTGTTGTGATT+TGG | + | chr5_2:30278899-30278918 | Msa0767280:intron | 25.0% |
!!! | CTGTTTTTTTGTTGTGATTT+GGG | + | chr5_2:30278900-30278919 | Msa0767280:intron | 25.0% |
!! | AGATCAATCATTTTCTAGAT+TGG | + | chr5_2:30278987-30279006 | Msa0767280:intron | 25.0% |
! | TTGTATTCAATATGCAGAAA+TGG | + | chr5_2:30279576-30279595 | Msa0767280:intron | 25.0% |
! | GAAGATAGAGATAAATCTAA+TGG | - | chr5_2:30279976-30279995 | None:intergenic | 25.0% |
! | ATTTATCTCTATCTTCGTTA+TGG | + | chr5_2:30279980-30279999 | Msa0767280:intron | 25.0% |
! | TATAGAGTTTCAGATAAAGA+TGG | + | chr5_2:30280240-30280259 | Msa0767280:intron | 25.0% |
!! | CTTTGAATTCTAGTTAATTG+TGG | + | chr5_2:30280265-30280284 | Msa0767280:intron | 25.0% |
! | CATTATAGGTTATAGATTAC+AGG | + | chr5_2:30280307-30280326 | Msa0767280:intron | 25.0% |
! | GTTAGGAGTTTAATAAACAA+GGG | - | chr5_2:30280374-30280393 | None:intergenic | 25.0% |
! | AGTTAGGAGTTTAATAAACA+AGG | - | chr5_2:30280375-30280394 | None:intergenic | 25.0% |
!! | TTCACTGTTTAATTCTAGTT+AGG | - | chr5_2:30280391-30280410 | None:intergenic | 25.0% |
! | AAGAGATTTCATATCACATA+AGG | - | chr5_2:30280529-30280548 | None:intergenic | 25.0% |
!!! | TCACAACTGTTTTGATTATT+AGG | + | chr5_2:30280776-30280795 | Msa0767280:intron | 25.0% |
! | GTTTCTATCTATTGTCTAAA+TGG | + | chr5_2:30280953-30280972 | Msa0767280:intron | 25.0% |
! | ATTAAAAATCTTGGATCTCA+GGG | - | chr5_2:30281243-30281262 | None:intergenic | 25.0% |
! | AGATATATATATTGTTGGGT+AGG | + | chr5_2:30281294-30281313 | Msa0767280:intron | 25.0% |
!!! | CTAATTTTTTGATAAGGTTG+GGG | - | chr5_2:30281423-30281442 | None:intergenic | 25.0% |
!!! | CCTAATTTTTTGATAAGGTT+GGG | - | chr5_2:30281424-30281443 | None:intergenic | 25.0% |
!!! | TCCTAATTTTTTGATAAGGT+TGG | - | chr5_2:30281425-30281444 | None:intergenic | 25.0% |
!!! | CTCATCCTAATTTTTTGATA+AGG | - | chr5_2:30281429-30281448 | None:intergenic | 25.0% |
! | GCTTAATTACACAATTAACT+AGG | - | chr5_2:30281550-30281569 | None:intergenic | 25.0% |
! | AAAGGTTAATACTTTCTTAC+AGG | + | chr5_2:30281612-30281631 | Msa0767280:intron | 25.0% |
!! | AACATAATGTCAAATTTTGG+GGG | - | chr5_2:30281882-30281901 | None:intergenic | 25.0% |
!!! | TTTTTAAGCTTTTCTTGCTA+TGG | + | chr5_2:30281984-30282003 | Msa0767280:three_prime_UTR | 25.0% |
! | AAAAAAAACAACACAAAGAC+AGG | - | chr5_2:30282093-30282112 | None:intergenic | 25.0% |
! | TCACTTTACTTAGAAACATA+AGG | - | chr5_2:30282153-30282172 | None:intergenic | 25.0% |
! | TTTAAGTGAAAAACAAAACG+TGG | + | chr5_2:30282320-30282339 | Msa0767280:three_prime_UTR | 25.0% |
! | TTAAGTGAAAAACAAAACGT+GGG | + | chr5_2:30282321-30282340 | Msa0767280:three_prime_UTR | 25.0% |
!! | GGGAAATACATTTTCTTAAT+TGG | + | chr5_2:30282341-30282360 | Msa0767280:three_prime_UTR | 25.0% |
TTTCAAACAACAAGATCCAA+CGG | + | chr5_2:30278535-30278554 | Msa0767280:five_prime_UTR | 30.0% | |
ATCAGAGAAAAACTCAAAGA+AGG | - | chr5_2:30278679-30278698 | None:intergenic | 30.0% | |
! | TTATTGATGTGTCATTGTGT+TGG | + | chr5_2:30279093-30279112 | Msa0767280:intron | 30.0% |
!! | GTTTGATTTGATGCTTAGAT+AGG | + | chr5_2:30279132-30279151 | Msa0767280:intron | 30.0% |
ATTTGATGCTTAGATAGGAA+AGG | + | chr5_2:30279137-30279156 | Msa0767280:intron | 30.0% | |
ACAACAGTAATGACTAATGA+TGG | + | chr5_2:30279362-30279381 | Msa0767280:intron | 30.0% | |
CAACAGTAATGACTAATGAT+GGG | + | chr5_2:30279363-30279382 | Msa0767280:intron | 30.0% | |
!! | TTACGTGTTTAATAATGGAC+TGG | - | chr5_2:30279445-30279464 | None:intergenic | 30.0% |
! | ACGTAATTTTTACCGTATCA+GGG | + | chr5_2:30279459-30279478 | Msa0767280:intron | 30.0% |
AAATTAATCTTCCCCTGATA+CGG | - | chr5_2:30279474-30279493 | None:intergenic | 30.0% | |
GTTGGATATAAAAACGTCAT+TGG | + | chr5_2:30279667-30279686 | Msa0767280:CDS | 30.0% | |
AAATCTAATGGCCAACAAAT+CGG | - | chr5_2:30279964-30279983 | None:intergenic | 30.0% | |
AAACATAGAATCTGTATGAC+CGG | + | chr5_2:30280066-30280085 | Msa0767280:intron | 30.0% | |
AAAAACAGTAAAGAAACCAC+CGG | - | chr5_2:30280088-30280107 | None:intergenic | 30.0% | |
ATGATAAGGACTACGAAATA+TGG | + | chr5_2:30280417-30280436 | Msa0767280:intron | 30.0% | |
AAATATGGAAACTGGAAAGA+TGG | + | chr5_2:30280432-30280451 | Msa0767280:intron | 30.0% | |
TGTGATATGAAATCTCTTTC+TGG | + | chr5_2:30280531-30280550 | Msa0767280:intron | 30.0% | |
! | AAAGAAGCATAAGGAAAACA+GGG | - | chr5_2:30280581-30280600 | None:intergenic | 30.0% |
! | AAAAGAAGCATAAGGAAAAC+AGG | - | chr5_2:30280582-30280601 | None:intergenic | 30.0% |
TCTATCTATTGTCTAAATGG+CGG | + | chr5_2:30280956-30280975 | Msa0767280:intron | 30.0% | |
GATTAAAAATCTTGGATCTC+AGG | - | chr5_2:30281244-30281263 | None:intergenic | 30.0% | |
! | GAGATCCAAGATTTTTAATC+TGG | + | chr5_2:30281244-30281263 | Msa0767280:intron | 30.0% |
ATCTATACCTTCAATGTGTT+TGG | - | chr5_2:30281278-30281297 | None:intergenic | 30.0% | |
ATATATATTGTTGGGTAGGT+TGG | + | chr5_2:30281298-30281317 | Msa0767280:intron | 30.0% | |
CCCAACCTTATCAAAAAATT+AGG | + | chr5_2:30281421-30281440 | Msa0767280:intron | 30.0% | |
TGGATAATTTATCCAATAGC+AGG | - | chr5_2:30281471-30281490 | None:intergenic | 30.0% | |
GAAACAAAATGACTATGGTA+TGG | - | chr5_2:30281499-30281518 | None:intergenic | 30.0% | |
TTAATACTTTCTTACAGGTG+AGG | + | chr5_2:30281617-30281636 | Msa0767280:intron | 30.0% | |
!! | GGTATGTATAAGATTGGTTT+CGG | + | chr5_2:30281680-30281699 | Msa0767280:intron | 30.0% |
!! | ATTTTGGGGGTAGAAATTAA+TGG | - | chr5_2:30281869-30281888 | None:intergenic | 30.0% |
!! | CAGCATTGATAAGATTTCAT+TGG | + | chr5_2:30281906-30281925 | Msa0767280:intron | 30.0% |
ATAAGATTTCATTGGATCTC+TGG | + | chr5_2:30281914-30281933 | Msa0767280:exon | 30.0% | |
TGCAGAAAAATGTGCTTAAA+AGG | - | chr5_2:30282206-30282225 | None:intergenic | 30.0% | |
!! | TTAATGGCTGTTTTACTGAA+TGG | + | chr5_2:30282268-30282287 | Msa0767280:three_prime_UTR | 30.0% |
! | TTTTTCACTTAAACGAGTCA+TGG | - | chr5_2:30282313-30282332 | None:intergenic | 30.0% |
!! | TGGATCTTGTTGTTTGAAAG+AGG | - | chr5_2:30278534-30278553 | None:intergenic | 35.0% |
!! | GAAAATCGAGCTTGTTGTAA+GGG | - | chr5_2:30278584-30278603 | None:intergenic | 35.0% |
AGGGTGAAGTGATTATATAG+TGG | - | chr5_2:30278610-30278629 | None:intergenic | 35.0% | |
AGAAGAAGAAGAAATGGGAT+GGG | - | chr5_2:30278650-30278669 | None:intergenic | 35.0% | |
AAGAAGAAGAAGAAATGGGA+TGG | - | chr5_2:30278651-30278670 | None:intergenic | 35.0% | |
GGCAAAGAAGAAGAAGAAAT+GGG | - | chr5_2:30278655-30278674 | None:intergenic | 35.0% | |
AGGCAAAGAAGAAGAAGAAA+TGG | - | chr5_2:30278656-30278675 | None:intergenic | 35.0% | |
AGAGAAAAACTCAAAGAAGG+AGG | - | chr5_2:30278676-30278695 | None:intergenic | 35.0% | |
GAACAAGCTGAAAGATATGA+AGG | + | chr5_2:30278781-30278800 | Msa0767280:CDS | 35.0% | |
ATTTCAACGACGCAATCAAA+GGG | - | chr5_2:30279284-30279303 | None:intergenic | 35.0% | |
AATTTCAACGACGCAATCAA+AGG | - | chr5_2:30279285-30279304 | None:intergenic | 35.0% | |
! | CTAATGATGGGAATTATGCT+TGG | + | chr5_2:30279375-30279394 | Msa0767280:intron | 35.0% |
TTGGGTCTATAACATCACTT+TGG | - | chr5_2:30279417-30279436 | None:intergenic | 35.0% | |
GTGATGTTATAGACCCAAAT+TGG | + | chr5_2:30279419-30279438 | Msa0767280:intron | 35.0% | |
!! | AATAATGGACTGGCCAATTT+GGG | - | chr5_2:30279435-30279454 | None:intergenic | 35.0% |
!! | TAATAATGGACTGGCCAATT+TGG | - | chr5_2:30279436-30279455 | None:intergenic | 35.0% |
! | CACGTAATTTTTACCGTATC+AGG | + | chr5_2:30279458-30279477 | Msa0767280:intron | 35.0% |
! | CGTAATTTTTACCGTATCAG+GGG | + | chr5_2:30279460-30279479 | Msa0767280:intron | 35.0% |
GGTTGAATGTATGAAGAAAG+TGG | + | chr5_2:30279597-30279616 | Msa0767280:CDS | 35.0% | |
ACTTGATGTTGAACTAACTG+TGG | + | chr5_2:30279624-30279643 | Msa0767280:CDS | 35.0% | |
! | TTTTATATCCAACAGAGAGG+AGG | - | chr5_2:30279660-30279679 | None:intergenic | 35.0% |
! | CGTTTTTATATCCAACAGAG+AGG | - | chr5_2:30279663-30279682 | None:intergenic | 35.0% |
! | TCAAATCCTTTCCGATTTGT+TGG | + | chr5_2:30279950-30279969 | Msa0767280:intron | 35.0% |
AGGTGGATAACAAATATGCA+AGG | - | chr5_2:30280123-30280142 | None:intergenic | 35.0% | |
!! | TTGCATATTTGTTATCCACC+TGG | + | chr5_2:30280122-30280141 | Msa0767280:intron | 35.0% |
CCAGGAGTTAATCATGAAAT+GGG | - | chr5_2:30280158-30280177 | None:intergenic | 35.0% | |
TCCTACTATGAATGAGTCAT+TGG | + | chr5_2:30280190-30280209 | Msa0767280:intron | 35.0% | |
TCCAATGACTCATTCATAGT+AGG | - | chr5_2:30280194-30280213 | None:intergenic | 35.0% | |
CTGAAACTCTATAACTTGAG+TGG | - | chr5_2:30280233-30280252 | None:intergenic | 35.0% | |
ACAGTGAAGAACTCATGATA+AGG | + | chr5_2:30280403-30280422 | Msa0767280:intron | 35.0% | |
AGATTATGAACTCTCCTGAA+AGG | + | chr5_2:30280886-30280905 | Msa0767280:CDS | 35.0% | |
CAAAAAACTGGAGATCTTGA+AGG | - | chr5_2:30281196-30281215 | None:intergenic | 35.0% | |
GGCATCCAGATTAAAAATCT+TGG | - | chr5_2:30281252-30281271 | None:intergenic | 35.0% | |
TACCTTCAATGTGTTTGGTT+TGG | - | chr5_2:30281273-30281292 | None:intergenic | 35.0% | |
! | TTTTTGATAAGGTTGGGGTA+AGG | - | chr5_2:30281418-30281437 | None:intergenic | 35.0% |
! | ATGACTATGGTATGGTTTTC+TGG | - | chr5_2:30281491-30281510 | None:intergenic | 35.0% |
! | CTCTGGAAACAAAATGACTA+TGG | - | chr5_2:30281504-30281523 | None:intergenic | 35.0% |
TATAACTGCTCCTACTAAAG+AGG | + | chr5_2:30281585-30281604 | Msa0767280:intron | 35.0% | |
! | TCCTACTAAAGAGGTTCTAA+AGG | + | chr5_2:30281594-30281613 | Msa0767280:intron | 35.0% |
!! | ACCTTTAGAACCTCTTTAGT+AGG | - | chr5_2:30281598-30281617 | None:intergenic | 35.0% |
! | TTTGGCTTCTTCAGCTTTAA+TGG | - | chr5_2:30281646-30281665 | None:intergenic | 35.0% |
ACCAATCTTATACATACCTC+AGG | - | chr5_2:30281678-30281697 | None:intergenic | 35.0% | |
AGATACATCACTACCGAATT+GGG | - | chr5_2:30281941-30281960 | None:intergenic | 35.0% | |
TAGATACATCACTACCGAAT+TGG | - | chr5_2:30281942-30281961 | None:intergenic | 35.0% | |
! | ATCTAAGATACTCAGTGAAG+AGG | + | chr5_2:30281957-30281976 | Msa0767280:three_prime_UTR | 35.0% |
! | TCTAAGATACTCAGTGAAGA+GGG | + | chr5_2:30281958-30281977 | Msa0767280:three_prime_UTR | 35.0% |
!! | AGCTTTTCTTGCTATGGATT+TGG | + | chr5_2:30281990-30282009 | Msa0767280:three_prime_UTR | 35.0% |
AAGACTGAAATCTCAACCGT+TGG | - | chr5_2:30278554-30278573 | None:intergenic | 40.0% | |
!! | CGAAAATCGAGCTTGTTGTA+AGG | - | chr5_2:30278585-30278604 | None:intergenic | 40.0% |
AAGCTTGGCCAAGTAAACTT+GGG | - | chr5_2:30278758-30278777 | None:intergenic | 40.0% | |
AAAGCTTGGCCAAGTAAACT+TGG | - | chr5_2:30278759-30278778 | None:intergenic | 40.0% | |
! | TTCAGCTTGTTCAGAAAGCT+TGG | - | chr5_2:30278773-30278792 | None:intergenic | 40.0% |
GCTTAGATAGGAAAGGAAAC+TGG | + | chr5_2:30279144-30279163 | Msa0767280:intron | 40.0% | |
TTGAACTAACTGTGGAAGAG+AGG | + | chr5_2:30279632-30279651 | Msa0767280:CDS | 40.0% | |
TATGTCCTCAATTGAGCAGA+AGG | + | chr5_2:30279714-30279733 | Msa0767280:CDS | 40.0% | |
GATCAAGAGTTACTGCCAAA+AGG | + | chr5_2:30279771-30279790 | Msa0767280:intron | 40.0% | |
! | CAGAATGTCACCACAGATTT+TGG | - | chr5_2:30279812-30279831 | None:intergenic | 40.0% |
GACAATTATTGACCAGCATC+TGG | + | chr5_2:30279831-30279850 | Msa0767280:CDS | 40.0% | |
TAATGGCCAACAAATCGGAA+AGG | - | chr5_2:30279959-30279978 | None:intergenic | 40.0% | |
!! | CATATTTGTTATCCACCTGG+TGG | + | chr5_2:30280125-30280144 | Msa0767280:intron | 40.0% |
CCCATTTCATGATTAACTCC+TGG | + | chr5_2:30280155-30280174 | Msa0767280:intron | 40.0% | |
GCCAGGAGTTAATCATGAAA+TGG | - | chr5_2:30280159-30280178 | None:intergenic | 40.0% | |
GGACTACGAAATATGGAAAC+TGG | + | chr5_2:30280424-30280443 | Msa0767280:intron | 40.0% | |
!! | TTTCTGGCTCAAACGTACTT+TGG | + | chr5_2:30280547-30280566 | Msa0767280:intron | 40.0% |
! | CCTGCATCAAAAGAAGCATA+AGG | - | chr5_2:30280590-30280609 | None:intergenic | 40.0% |
! | CCTTATGCTTCTTTTGATGC+AGG | + | chr5_2:30280587-30280606 | Msa0767280:intron | 40.0% |
! | TGCTTCTTTTGATGCAGGAA+AGG | + | chr5_2:30280592-30280611 | Msa0767280:intron | 40.0% |
GCAGGAAAGGTGATTATTTC+CGG | + | chr5_2:30280605-30280624 | Msa0767280:intron | 40.0% | |
TCTTGAACTCAGCAAGATAC+CGG | - | chr5_2:30280627-30280646 | None:intergenic | 40.0% | |
GACTGACCAAGAAAGAAAAG+AGG | + | chr5_2:30280645-30280664 | Msa0767280:CDS | 40.0% | |
GAATCGATTGCTTACCTTTC+AGG | - | chr5_2:30280903-30280922 | None:intergenic | 40.0% | |
CGATTCTCTCATACTTTGCA+TGG | + | chr5_2:30280917-30280936 | Msa0767280:intron | 40.0% | |
ATGGCGGTGATAAAACTTAC+AGG | + | chr5_2:30280972-30280991 | Msa0767280:intron | 40.0% | |
TGGCGGTGATAAAACTTACA+GGG | + | chr5_2:30280973-30280992 | Msa0767280:intron | 40.0% | |
! | CAAAAGCTTGTTTGGCCAAA+TGG | - | chr5_2:30281003-30281022 | None:intergenic | 40.0% |
! | TGCCTCATCAAAAGCTTGTT+TGG | - | chr5_2:30281011-30281030 | None:intergenic | 40.0% |
TGCCAAACCAAACACATTGA+AGG | + | chr5_2:30281268-30281287 | Msa0767280:intron | 40.0% | |
TTGGCATTCCATATCCTAGT+GGG | + | chr5_2:30281317-30281336 | Msa0767280:intron | 40.0% | |
! | AAGTCAACTTGGTGGACAAT+GGG | - | chr5_2:30281353-30281372 | None:intergenic | 40.0% |
TGATTAGGGACAAGTCAACT+TGG | - | chr5_2:30281364-30281383 | None:intergenic | 40.0% | |
GATTACTCTTGCGGTGATTA+GGG | - | chr5_2:30281378-30281397 | None:intergenic | 40.0% | |
TGATTACTCTTGCGGTGATT+AGG | - | chr5_2:30281379-30281398 | None:intergenic | 40.0% | |
TAAGAAACTGTGCCTGCTAT+TGG | + | chr5_2:30281456-30281475 | Msa0767280:intron | 40.0% | |
TCACTAGAAGAAACTCACTC+TGG | - | chr5_2:30281521-30281540 | None:intergenic | 40.0% | |
GCCTGAGGTATGTATAAGAT+TGG | + | chr5_2:30281674-30281693 | Msa0767280:intron | 40.0% | |
GATACATCACTACCGAATTG+GGG | - | chr5_2:30281940-30281959 | None:intergenic | 40.0% | |
CTAAGATACTCAGTGAAGAG+GGG | + | chr5_2:30281959-30281978 | Msa0767280:three_prime_UTR | 40.0% | |
! | CTATGGATTTGGACTAGACA+AGG | + | chr5_2:30282001-30282020 | Msa0767280:three_prime_UTR | 40.0% |
CTTCGGTTGGATAACTAAGA+GGG | - | chr5_2:30282056-30282075 | None:intergenic | 40.0% | |
TGCATTCATCGAGTCTGAAT+TGG | + | chr5_2:30282222-30282241 | Msa0767280:three_prime_UTR | 40.0% | |
!!! | GGTCTCTCTCTCTTTTTCAG+CGG | - | chr5_2:30278737-30278756 | None:intergenic | 45.0% |
GAGAGAGACCCAAGTTTACT+TGG | + | chr5_2:30278747-30278766 | Msa0767280:CDS | 45.0% | |
GAGGAACTCTCCAAAATCTG+TGG | + | chr5_2:30279799-30279818 | Msa0767280:CDS | 45.0% | |
! | GAAAACATTAGCTTCTGCCG+AGG | - | chr5_2:30279869-30279888 | None:intergenic | 45.0% |
CATAGAATCTGTATGACCGG+TGG | + | chr5_2:30280069-30280088 | Msa0767280:intron | 45.0% | |
!! | TGATTAACTCCTGGCTCTAC+AGG | + | chr5_2:30280164-30280183 | Msa0767280:intron | 45.0% |
!! | GATTAACTCCTGGCTCTACA+GGG | + | chr5_2:30280165-30280184 | Msa0767280:intron | 45.0% |
! | CAGCAGCCTCTTTTCTTTCT+TGG | - | chr5_2:30280654-30280673 | None:intergenic | 45.0% |
TCAGTCACTGAAAGGATACG+AGG | + | chr5_2:30280675-30280694 | Msa0767280:CDS | 45.0% | |
AAGATCAGTGTTTGCAGTGG+CGG | - | chr5_2:30280808-30280827 | None:intergenic | 45.0% | |
TGGAAGATCAGTGTTTGCAG+TGG | - | chr5_2:30280811-30280830 | None:intergenic | 45.0% | |
!! | AGACGGATTGGATGTGTTGA+TGG | - | chr5_2:30280831-30280850 | None:intergenic | 45.0% |
TCAACACATCCAATCCGTCT+TGG | + | chr5_2:30280831-30280850 | Msa0767280:CDS | 45.0% | |
AGTTGAGTGCAAGTCCAAGA+CGG | - | chr5_2:30280848-30280867 | None:intergenic | 45.0% | |
! | GGCCAAACAAGCTTTTGATG+AGG | + | chr5_2:30281006-30281025 | Msa0767280:CDS | 45.0% |
TGATGAGGCAATTGCAGAGT+TGG | + | chr5_2:30281021-30281040 | Msa0767280:CDS | 45.0% | |
CTTGTACGACTCTTCACTCA+AGG | - | chr5_2:30281050-30281069 | None:intergenic | 45.0% | |
CTTGAGTGAAGAGTCGTACA+AGG | + | chr5_2:30281048-30281067 | Msa0767280:CDS | 45.0% | |
GTTGGCATTCCATATCCTAG+TGG | + | chr5_2:30281316-30281335 | Msa0767280:intron | 45.0% | |
TGGCATTCCATATCCTAGTG+GGG | + | chr5_2:30281318-30281337 | Msa0767280:intron | 45.0% | |
CATTTGTCCCCACTAGGATA+TGG | - | chr5_2:30281328-30281347 | None:intergenic | 45.0% | |
! | CAAGTCAACTTGGTGGACAA+TGG | - | chr5_2:30281354-30281373 | None:intergenic | 45.0% |
TTAGGGACAAGTCAACTTGG+TGG | - | chr5_2:30281361-30281380 | None:intergenic | 45.0% | |
CGAGTGGATGATTACTCTTG+CGG | - | chr5_2:30281387-30281406 | None:intergenic | 45.0% | |
GGGTAAGGATACAAATCGAG+TGG | - | chr5_2:30281403-30281422 | None:intergenic | 45.0% | |
TATACATACCTCAGGCTCAG+CGG | - | chr5_2:30281670-30281689 | None:intergenic | 45.0% | |
! | TGGATTTGGACTAGACAAGG+TGG | + | chr5_2:30282004-30282023 | Msa0767280:three_prime_UTR | 45.0% |
GGACTAGACAAGGTGGAATT+TGG | + | chr5_2:30282011-30282030 | Msa0767280:three_prime_UTR | 45.0% | |
GCTTCGGTTGGATAACTAAG+AGG | - | chr5_2:30282057-30282076 | None:intergenic | 45.0% | |
CTTAGTTATCCAACCGAAGC+CGG | + | chr5_2:30282057-30282076 | Msa0767280:three_prime_UTR | 45.0% | |
AAAGACAGGTGCAGATCTTC+CGG | - | chr5_2:30282079-30282098 | None:intergenic | 45.0% | |
GGATGTGATGCGAGAGAGAA+GGG | - | chr5_2:30278629-30278648 | None:intergenic | 50.0% | |
TTGGTGCACGAAGAGCTTCA+TGG | + | chr5_2:30279686-30279705 | Msa0767280:CDS | 50.0% | |
GTCCTCAATTGAGCAGAAGG+AGG | + | chr5_2:30279717-30279736 | Msa0767280:CDS | 50.0% | |
CTCCTCCTTCTGCTCAATTG+AGG | - | chr5_2:30279722-30279741 | None:intergenic | 50.0% | |
TGAGCAGAAGGAGGAGTCTA+AGG | + | chr5_2:30279726-30279745 | Msa0767280:CDS | 50.0% | |
GAGCAGAAGGAGGAGTCTAA+GGG | + | chr5_2:30279727-30279746 | Msa0767280:CDS | 50.0% | |
GAGTTACTGCCAAAAGGTCG+AGG | + | chr5_2:30279777-30279796 | Msa0767280:intron | 50.0% | |
TTACTGCCAAAAGGTCGAGG+AGG | + | chr5_2:30279780-30279799 | Msa0767280:intron | 50.0% | |
! | AGAGTTCCTCCTCGACCTTT+TGG | - | chr5_2:30279789-30279808 | None:intergenic | 50.0% |
! | AACATTAGCTTCTGCCGAGG+TGG | - | chr5_2:30279866-30279885 | None:intergenic | 50.0% |
GCTGCTGATCAGTCACTGAA+AGG | + | chr5_2:30280667-30280686 | Msa0767280:CDS | 50.0% | |
AGTGCAAGTCCAAGACGGAT+TGG | - | chr5_2:30280843-30280862 | None:intergenic | 50.0% | |
AACTTACAGGGCCTGCCATT+TGG | + | chr5_2:30280985-30281004 | Msa0767280:intron | 50.0% | |
! | AGCTTGTTTGGCCAAATGGC+AGG | - | chr5_2:30280999-30281018 | None:intergenic | 50.0% |
TGAGAGACAACCTGACTCTC+TGG | + | chr5_2:30281095-30281114 | Msa0767280:CDS | 50.0% | |
AATCAGAGGTCCAGAGAGTC+AGG | - | chr5_2:30281108-30281127 | None:intergenic | 50.0% | |
! | ACCTCTGATTTGCCAGAGGA+TGG | + | chr5_2:30281118-30281137 | Msa0767280:CDS | 50.0% |
TCCATCCTCTGGCAAATCAG+AGG | - | chr5_2:30281122-30281141 | None:intergenic | 50.0% | |
! | TCTGATTTGCCAGAGGATGG+AGG | + | chr5_2:30281121-30281140 | Msa0767280:CDS | 50.0% |
TTTGCCAGAGGATGGAGGTA+AGG | + | chr5_2:30281126-30281145 | Msa0767280:intron | 50.0% | |
TTGCCAGAGGATGGAGGTAA+GGG | + | chr5_2:30281127-30281146 | Msa0767280:intron | 50.0% | |
TATCCCTTACCTCCATCCTC+TGG | - | chr5_2:30281133-30281152 | None:intergenic | 50.0% | |
ATACATACCTCAGGCTCAGC+GGG | - | chr5_2:30281669-30281688 | None:intergenic | 50.0% | |
TTGGATCTCTGGCCCCAATT+CGG | + | chr5_2:30281925-30281944 | Msa0767280:three_prime_UTR | 50.0% | |
GGGATGTGATGCGAGAGAGA+AGG | - | chr5_2:30278630-30278649 | None:intergenic | 55.0% | |
GAGAGGAACCTCCTCTCTGT+TGG | + | chr5_2:30279649-30279668 | Msa0767280:CDS | 55.0% | |
TGGAAGCAGGAACCAGATGC+TGG | - | chr5_2:30279846-30279865 | None:intergenic | 55.0% | |
! | TCTGGTTCCTGCTTCCACCT+CGG | + | chr5_2:30279849-30279868 | Msa0767280:CDS | 55.0% |
GAAATGGGTGCTCATCCACC+AGG | - | chr5_2:30280143-30280162 | None:intergenic | 55.0% | |
! | CTGGACCTCTGATTTGCCAG+AGG | + | chr5_2:30281114-30281133 | Msa0767280:CDS | 55.0% |
!! | TGGGAGCATTTGTCCCCACT+AGG | - | chr5_2:30281334-30281353 | None:intergenic | 55.0% |
AGGGCACGAGAGCTATGAAG+TGG | - | chr5_2:30282037-30282056 | None:intergenic | 55.0% | |
AGGTGCAGATCTTCCGGCTT+CGG | - | chr5_2:30282073-30282092 | None:intergenic | 55.0% | |
ATGGGTGCTCATCCACCAGG+TGG | - | chr5_2:30280140-30280159 | None:intergenic | 60.0% | |
GTAGGACTCCCTGTAGAGCC+AGG | - | chr5_2:30280176-30280195 | None:intergenic | 60.0% | |
! | TACCTCAGGCTCAGCGGGTT+TGG | - | chr5_2:30281664-30281683 | None:intergenic | 60.0% |
GCAGATCTTCCGGCTTCGGT+TGG | - | chr5_2:30282069-30282088 | None:intergenic | 60.0% | |
GCTTCTGCCGAGGTGGAAGC+AGG | - | chr5_2:30279859-30279878 | None:intergenic | 65.0% | |
AGCCAAACCCGCTGAGCCTG+AGG | + | chr5_2:30281659-30281678 | Msa0767280:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_2 | gene | 30278515 | 30282399 | 30278515 | ID=Msa0767280;Name=Msa0767280 |
chr5_2 | mRNA | 30278515 | 30282399 | 30278515 | ID=Msa0767280-mRNA-1;Parent=Msa0767280;Name=Msa0767280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=215|0.85|0.75|1|0.71|0.62|8|485|249 |
chr5_2 | exon | 30278515 | 30278802 | 30278515 | ID=Msa0767280-mRNA-1:exon:11380;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30279593 | 30279762 | 30279593 | ID=Msa0767280-mRNA-1:exon:11381;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30279793 | 30279899 | 30279793 | ID=Msa0767280-mRNA-1:exon:11382;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30280609 | 30280696 | 30280609 | ID=Msa0767280-mRNA-1:exon:11383;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30280798 | 30280907 | 30280798 | ID=Msa0767280-mRNA-1:exon:11384;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30280994 | 30281142 | 30280994 | ID=Msa0767280-mRNA-1:exon:11385;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30281634 | 30281680 | 30281634 | ID=Msa0767280-mRNA-1:exon:11386;Parent=Msa0767280-mRNA-1 |
chr5_2 | exon | 30281909 | 30282399 | 30281909 | ID=Msa0767280-mRNA-1:exon:11387;Parent=Msa0767280-mRNA-1 |
chr5_2 | five_prime_UTR | 30278515 | 30278729 | 30278515 | ID=Msa0767280-mRNA-1:five_prime_utr;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30278730 | 30278802 | 30278730 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30279593 | 30279762 | 30279593 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30279793 | 30279899 | 30279793 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30280609 | 30280696 | 30280609 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30280798 | 30280907 | 30280798 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30280994 | 30281142 | 30280994 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30281634 | 30281680 | 30281634 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | CDS | 30281909 | 30281914 | 30281909 | ID=Msa0767280-mRNA-1:cds;Parent=Msa0767280-mRNA-1 |
chr5_2 | three_prime_UTR | 30281915 | 30282399 | 30281915 | ID=Msa0767280-mRNA-1:three_prime_utr;Parent=Msa0767280-mRNA-1 |
Gene Sequence |
Protein sequence |