Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100730 | XP_003589198.1 | 94.144 | 222 | 12 | 1 | 1 | 222 | 6 | 226 | 9.64e-135 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100730 | sp|Q8GWW4|GUX2_ARATH | 60.465 | 215 | 77 | 4 | 31 | 238 | 88 | 301 | 1.27e-83 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100730 | G7I3L4 | 94.144 | 222 | 12 | 1 | 1 | 222 | 6 | 226 | 4.61e-135 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218810 | Msa1100730 | 0.806133 | 9.539209e-50 | -8.615850e-47 |
| Msa0392380 | Msa1100730 | 0.845041 | 5.199108e-59 | -8.615850e-47 |
| Msa0440320 | Msa1100730 | 0.834802 | 2.427588e-56 | -8.615850e-47 |
| Msa0243600 | Msa1100730 | 0.815378 | 9.532713e-52 | -8.615850e-47 |
| Msa0487500 | Msa1100730 | 0.819910 | 9.062083e-53 | -8.615850e-47 |
| Msa0934890 | Msa1100730 | 0.806921 | 6.505509e-50 | -8.615850e-47 |
| Msa0974060 | Msa1100730 | 0.800615 | 1.326341e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100730 | MtrunA17_Chr1g0153481 | 93.607 | 219 | 13 | 1 | 4 | 222 | 62 | 279 | 7.10e-136 | 394 |
| Msa1100730 | MtrunA17_Chr1g0153471 | 84.475 | 219 | 34 | 0 | 4 | 222 | 63 | 281 | 1.82e-122 | 360 |
| Msa1100730 | MtrunA17_Chr7g0272921 | 38.624 | 189 | 93 | 6 | 49 | 221 | 67 | 248 | 7.81e-35 | 130 |
| Msa1100730 | MtrunA17_Chr1g0191821 | 40.212 | 189 | 96 | 5 | 46 | 221 | 56 | 240 | 6.72e-30 | 116 |
| Msa1100730 | MtrunA17_Chr1g0159301 | 32.301 | 226 | 130 | 7 | 9 | 217 | 80 | 299 | 3.51e-28 | 112 |
| Msa1100730 | MtrunA17_Chr3g0129911 | 37.427 | 171 | 96 | 7 | 51 | 217 | 128 | 291 | 2.50e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100730 | AT4G33330.3 | 60.465 | 215 | 77 | 4 | 31 | 238 | 99 | 312 | 2.54e-86 | 264 |
| Msa1100730 | AT4G33330.5 | 60.465 | 215 | 77 | 4 | 31 | 238 | 20 | 233 | 2.48e-85 | 263 |
| Msa1100730 | AT4G33330.1 | 60.465 | 215 | 77 | 4 | 31 | 238 | 88 | 301 | 1.29e-84 | 263 |
| Msa1100730 | AT4G33330.4 | 60.465 | 215 | 77 | 4 | 31 | 238 | 99 | 312 | 1.47e-84 | 263 |
| Msa1100730 | AT4G33330.2 | 60.465 | 215 | 77 | 4 | 31 | 238 | 88 | 301 | 1.78e-84 | 263 |
| Msa1100730 | AT1G08990.1 | 39.655 | 174 | 98 | 4 | 47 | 214 | 75 | 247 | 2.85e-32 | 123 |
| Msa1100730 | AT3G18660.1 | 38.587 | 184 | 98 | 7 | 43 | 217 | 127 | 304 | 5.88e-30 | 117 |
| Msa1100730 | AT3G18660.3 | 38.587 | 184 | 98 | 7 | 43 | 217 | 126 | 303 | 6.34e-30 | 117 |
| Msa1100730 | AT3G18660.2 | 38.587 | 184 | 98 | 7 | 43 | 217 | 131 | 308 | 8.73e-30 | 117 |
| Msa1100730 | AT1G54940.1 | 36.517 | 178 | 94 | 6 | 47 | 214 | 70 | 238 | 1.78e-29 | 115 |
| Msa1100730 | AT1G77130.1 | 34.682 | 173 | 100 | 5 | 51 | 217 | 106 | 271 | 5.83e-29 | 114 |
Find 42 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTAGTTCCATTCTTCTT+TGG | 0.147350 | 7_3:+31053778 | None:intergenic |
| AGCAAATATGGTTGTGAAAA+AGG | 0.166021 | 7_3:-31053419 | Msa1100730:CDS |
| GCCTGTTGGGTCTTGCAATT+TGG | 0.190414 | 7_3:-31053242 | Msa1100730:CDS |
| GATACTTTGTCGAAATTAAT+TGG | 0.214953 | 7_3:+31053643 | None:intergenic |
| GCAATTTGGCTTTGCCTCTA+TGG | 0.215532 | 7_3:-31053228 | Msa1100730:CDS |
| TCATCTTATTGTAGCAAATA+TGG | 0.245549 | 7_3:-31053431 | Msa1100730:CDS |
| TGTTCATATGTTGCAAATTC+TGG | 0.262628 | 7_3:+31053532 | None:intergenic |
| TCTTAGTTCCATTCTTCTTT+GGG | 0.278655 | 7_3:+31053779 | None:intergenic |
| ATGGGTAAAGGAATGAAAAT+TGG | 0.285847 | 7_3:-31053727 | Msa1100730:CDS |
| AAATTCTGGCATTGGTAATT+CGG | 0.310582 | 7_3:+31053546 | None:intergenic |
| GAAAATTGGAATGGTGAATA+TGG | 0.316421 | 7_3:-31053713 | Msa1100730:CDS |
| TTCTTCTTCATCGATCCATT+CGG | 0.342052 | 7_3:+31053591 | None:intergenic |
| AGAAAATTTCTTTGCCTGTT+GGG | 0.364645 | 7_3:-31053255 | Msa1100730:CDS |
| CAATTTGGCTTTGCCTCTAT+GGG | 0.366369 | 7_3:-31053227 | Msa1100730:CDS |
| TGAAGTTGATGTAAAGAAGT+TGG | 0.369288 | 7_3:-31053281 | Msa1100730:CDS |
| TCTTCTTCATCGATCCATTC+GGG | 0.376872 | 7_3:+31053592 | None:intergenic |
| GGAAGAGTAAGGTTGTGTTT+TGG | 0.395531 | 7_3:-31053378 | Msa1100730:CDS |
| AATTCTGGCATTGGTAATTC+GGG | 0.401126 | 7_3:+31053547 | None:intergenic |
| CCATGCAAGTATCCATTAGA+AGG | 0.406398 | 7_3:-31053484 | Msa1100730:CDS |
| CAGAAAATTTCTTTGCCTGT+TGG | 0.425692 | 7_3:-31053256 | Msa1100730:CDS |
| AGGGGAAGAAAGATTGGAAA+TGG | 0.435577 | 7_3:-31053399 | Msa1100730:CDS |
| TATGTTGCAAATTCTGGCAT+TGG | 0.454598 | 7_3:+31053538 | None:intergenic |
| GCCAAATTGCAAGACCCAAC+AGG | 0.456241 | 7_3:+31053241 | None:intergenic |
| CAAGTATCCATTAGAAGGGT+GGG | 0.493728 | 7_3:-31053479 | Msa1100730:CDS |
| TCAAGGAACCCAAAGAAGAA+TGG | 0.494099 | 7_3:-31053787 | Msa1100730:CDS |
| GAGTAAGTGTAGACCAATGT+TGG | 0.521320 | 7_3:-31053356 | Msa1100730:CDS |
| AATTACCAAAAGCAAAATCA+AGG | 0.538040 | 7_3:-31053804 | Msa1100730:CDS |
| TACATACCTTGTTCCCATAG+AGG | 0.546595 | 7_3:+31053214 | None:intergenic |
| GGACAGATTTATTTCCCGAA+TGG | 0.547391 | 7_3:-31053606 | Msa1100730:CDS |
| AAGACGACGATGTAAGTGAA+TGG | 0.561938 | 7_3:-31053687 | Msa1100730:CDS |
| CCTTCTAATGGATACTTGCA+TGG | 0.564429 | 7_3:+31053484 | None:intergenic |
| GCTTTGCCTCTATGGGAACA+AGG | 0.576091 | 7_3:-31053220 | Msa1100730:CDS |
| AGATTGGAAATGGAAGAGTA+AGG | 0.583344 | 7_3:-31053389 | Msa1100730:CDS |
| ATTGGTAATTCGGGACATGT+TGG | 0.586011 | 7_3:+31053556 | None:intergenic |
| GCAAGTATCCATTAGAAGGG+TGG | 0.596603 | 7_3:-31053480 | Msa1100730:CDS |
| AAGTATCCATTAGAAGGGTG+GGG | 0.601975 | 7_3:-31053478 | Msa1100730:CDS |
| AGTATCCATTAGAAGGGTGG+GGG | 0.605531 | 7_3:-31053477 | Msa1100730:CDS |
| GTAAGTGAATGGAACATACA+TGG | 0.609183 | 7_3:-31053676 | Msa1100730:CDS |
| CATGCAAGTATCCATTAGAA+GGG | 0.613293 | 7_3:-31053483 | Msa1100730:CDS |
| TAAAGGAATGAAAATTGGAA+TGG | 0.639883 | 7_3:-31053722 | Msa1100730:CDS |
| ATTTGCAACATATGAACACA+TGG | 0.654069 | 7_3:-31053527 | Msa1100730:CDS |
| AATTGGAATGGTGAATATGG+AGG | 0.664287 | 7_3:-31053710 | Msa1100730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTTATTTCCATGTT+TGG | + | chr7_3:31053258-31053277 | None:intergenic | 20.0% |
| !! | AAAAGATTTATTTCCATGTT+TGG | + | chr7_3:31053258-31053277 | None:intergenic | 20.0% |
| !! | ATTTTATTGTGTACCAAACA+TGG | - | chr7_3:31053242-31053261 | Msa1100730:CDS | 25.0% |
| ! | AAAAATCAAAGCAGTATTAG+AGG | - | chr7_3:31053318-31053337 | Msa1100730:CDS | 25.0% |
| ! | AATTACCAAAAGCAAAATCA+AGG | - | chr7_3:31053341-31053360 | Msa1100730:CDS | 25.0% |
| ! | TAAAGGAATGAAAATTGGAA+TGG | - | chr7_3:31053423-31053442 | Msa1100730:CDS | 25.0% |
| ! | GATACTTTGTCGAAATTAAT+TGG | + | chr7_3:31053505-31053524 | None:intergenic | 25.0% |
| !!! | AAGTATCACAATTTTTCAAC+TGG | - | chr7_3:31053518-31053537 | Msa1100730:CDS | 25.0% |
| ! | TCATCTTATTGTAGCAAATA+TGG | - | chr7_3:31053714-31053733 | Msa1100730:CDS | 25.0% |
| !! | GATTTTTACATGTGATGATT+TGG | - | chr7_3:31053813-31053832 | Msa1100730:CDS | 25.0% |
| !!! | GATGATTTGGTTAAAAATGA+AGG | - | chr7_3:31053826-31053845 | Msa1100730:CDS | 25.0% |
| !! | ATTTTATTGTGTACCAAACA+TGG | - | chr7_3:31053242-31053261 | Msa1100730:CDS | 25.0% |
| ! | AAAAATCAAAGCAGTATTAG+AGG | - | chr7_3:31053318-31053337 | Msa1100730:CDS | 25.0% |
| ! | AATTACCAAAAGCAAAATCA+AGG | - | chr7_3:31053341-31053360 | Msa1100730:CDS | 25.0% |
| ! | TAAAGGAATGAAAATTGGAA+TGG | - | chr7_3:31053423-31053442 | Msa1100730:CDS | 25.0% |
| ! | GATACTTTGTCGAAATTAAT+TGG | + | chr7_3:31053505-31053524 | None:intergenic | 25.0% |
| !!! | AAGTATCACAATTTTTCAAC+TGG | - | chr7_3:31053518-31053537 | Msa1100730:CDS | 25.0% |
| ! | TCATCTTATTGTAGCAAATA+TGG | - | chr7_3:31053714-31053733 | Msa1100730:CDS | 25.0% |
| !! | GATTTTTACATGTGATGATT+TGG | - | chr7_3:31053813-31053832 | Msa1100730:CDS | 25.0% |
| !!! | GATGATTTGGTTAAAAATGA+AGG | - | chr7_3:31053826-31053845 | Msa1100730:CDS | 25.0% |
| AAACAGAAGAAGATGAGAAA+GGG | + | chr7_3:31053193-31053212 | None:intergenic | 30.0% | |
| AAAACAGAAGAAGATGAGAA+AGG | + | chr7_3:31053194-31053213 | None:intergenic | 30.0% | |
| TCTTAGTTCCATTCTTCTTT+GGG | + | chr7_3:31053369-31053388 | None:intergenic | 30.0% | |
| ATCTTAGTTCCATTCTTCTT+TGG | + | chr7_3:31053370-31053389 | None:intergenic | 30.0% | |
| !!! | ATAGAAGTACCAAGTTTTCT+AGG | - | chr7_3:31053388-31053407 | Msa1100730:CDS | 30.0% |
| !!! | ATTTTTTCGCCTAGAAAACT+TGG | + | chr7_3:31053400-31053419 | None:intergenic | 30.0% |
| ! | AAGTTTTCTAGGCGAAAAAA+TGG | - | chr7_3:31053399-31053418 | Msa1100730:CDS | 30.0% |
| ! | AGTTTTCTAGGCGAAAAAAT+GGG | - | chr7_3:31053400-31053419 | Msa1100730:CDS | 30.0% |
| ATGGGTAAAGGAATGAAAAT+TGG | - | chr7_3:31053418-31053437 | Msa1100730:CDS | 30.0% | |
| GAAAATTGGAATGGTGAATA+TGG | - | chr7_3:31053432-31053451 | Msa1100730:CDS | 30.0% | |
| !! | AAATTCTGGCATTGGTAATT+CGG | + | chr7_3:31053602-31053621 | None:intergenic | 30.0% |
| TGTTCATATGTTGCAAATTC+TGG | + | chr7_3:31053616-31053635 | None:intergenic | 30.0% | |
| ATTTGCAACATATGAACACA+TGG | - | chr7_3:31053618-31053637 | Msa1100730:CDS | 30.0% | |
| AGCAAATATGGTTGTGAAAA+AGG | - | chr7_3:31053726-31053745 | Msa1100730:CDS | 30.0% | |
| GCAAATATGGTTGTGAAAAA+GGG | - | chr7_3:31053727-31053746 | Msa1100730:CDS | 30.0% | |
| CAAATATGGTTGTGAAAAAG+GGG | - | chr7_3:31053728-31053747 | Msa1100730:CDS | 30.0% | |
| CATGTAAAAATCTCCAACAT+TGG | + | chr7_3:31053805-31053824 | None:intergenic | 30.0% | |
| TGGTTAAAAATGAAGGTGAT+TGG | - | chr7_3:31053833-31053852 | Msa1100730:CDS | 30.0% | |
| TTAAAAATGAAGGTGATTGG+TGG | - | chr7_3:31053836-31053855 | Msa1100730:CDS | 30.0% | |
| !! | TGAAGTTGATGTAAAGAAGT+TGG | - | chr7_3:31053864-31053883 | Msa1100730:intron | 30.0% |
| AGAAAATTTCTTTGCCTGTT+GGG | - | chr7_3:31053890-31053909 | Msa1100730:intron | 30.0% | |
| ! | CACAAAATTTTGCATTGAAG+TGG | - | chr7_3:31053960-31053979 | Msa1100730:intron | 30.0% |
| AAACAGAAGAAGATGAGAAA+GGG | + | chr7_3:31053193-31053212 | None:intergenic | 30.0% | |
| AAAACAGAAGAAGATGAGAA+AGG | + | chr7_3:31053194-31053213 | None:intergenic | 30.0% | |
| TCTTAGTTCCATTCTTCTTT+GGG | + | chr7_3:31053369-31053388 | None:intergenic | 30.0% | |
| ATCTTAGTTCCATTCTTCTT+TGG | + | chr7_3:31053370-31053389 | None:intergenic | 30.0% | |
| !!! | ATAGAAGTACCAAGTTTTCT+AGG | - | chr7_3:31053388-31053407 | Msa1100730:CDS | 30.0% |
| !!! | ATTTTTTCGCCTAGAAAACT+TGG | + | chr7_3:31053400-31053419 | None:intergenic | 30.0% |
| ! | AAGTTTTCTAGGCGAAAAAA+TGG | - | chr7_3:31053399-31053418 | Msa1100730:CDS | 30.0% |
| ! | AGTTTTCTAGGCGAAAAAAT+GGG | - | chr7_3:31053400-31053419 | Msa1100730:CDS | 30.0% |
| ATGGGTAAAGGAATGAAAAT+TGG | - | chr7_3:31053418-31053437 | Msa1100730:CDS | 30.0% | |
| GAAAATTGGAATGGTGAATA+TGG | - | chr7_3:31053432-31053451 | Msa1100730:CDS | 30.0% | |
| !! | AAATTCTGGCATTGGTAATT+CGG | + | chr7_3:31053602-31053621 | None:intergenic | 30.0% |
| TGTTCATATGTTGCAAATTC+TGG | + | chr7_3:31053616-31053635 | None:intergenic | 30.0% | |
| ATTTGCAACATATGAACACA+TGG | - | chr7_3:31053618-31053637 | Msa1100730:CDS | 30.0% | |
| AGCAAATATGGTTGTGAAAA+AGG | - | chr7_3:31053726-31053745 | Msa1100730:CDS | 30.0% | |
| GCAAATATGGTTGTGAAAAA+GGG | - | chr7_3:31053727-31053746 | Msa1100730:CDS | 30.0% | |
| CAAATATGGTTGTGAAAAAG+GGG | - | chr7_3:31053728-31053747 | Msa1100730:CDS | 30.0% | |
| CATGTAAAAATCTCCAACAT+TGG | + | chr7_3:31053805-31053824 | None:intergenic | 30.0% | |
| TGGTTAAAAATGAAGGTGAT+TGG | - | chr7_3:31053833-31053852 | Msa1100730:CDS | 30.0% | |
| TTAAAAATGAAGGTGATTGG+TGG | - | chr7_3:31053836-31053855 | Msa1100730:CDS | 30.0% | |
| !! | TGAAGTTGATGTAAAGAAGT+TGG | - | chr7_3:31053864-31053883 | Msa1100730:intron | 30.0% |
| AGAAAATTTCTTTGCCTGTT+GGG | - | chr7_3:31053890-31053909 | Msa1100730:intron | 30.0% | |
| ! | CACAAAATTTTGCATTGAAG+TGG | - | chr7_3:31053960-31053979 | Msa1100730:intron | 30.0% |
| TTGTGTGATCTTCAACTTGT+AGG | - | chr7_3:31053282-31053301 | Msa1100730:CDS | 35.0% | |
| TGTGTGATCTTCAACTTGTA+GGG | - | chr7_3:31053283-31053302 | Msa1100730:CDS | 35.0% | |
| AATTGGAATGGTGAATATGG+AGG | - | chr7_3:31053435-31053454 | Msa1100730:CDS | 35.0% | |
| GTAAGTGAATGGAACATACA+TGG | - | chr7_3:31053469-31053488 | Msa1100730:CDS | 35.0% | |
| TTCTTCTTCATCGATCCATT+CGG | + | chr7_3:31053557-31053576 | None:intergenic | 35.0% | |
| !! | AATTCTGGCATTGGTAATTC+GGG | + | chr7_3:31053601-31053620 | None:intergenic | 35.0% |
| TATGTTGCAAATTCTGGCAT+TGG | + | chr7_3:31053610-31053629 | None:intergenic | 35.0% | |
| CATGCAAGTATCCATTAGAA+GGG | - | chr7_3:31053662-31053681 | Msa1100730:CDS | 35.0% | |
| TGAAAAAGGGGAAGAAAGAT+TGG | - | chr7_3:31053740-31053759 | Msa1100730:CDS | 35.0% | |
| AGATTGGAAATGGAAGAGTA+AGG | - | chr7_3:31053756-31053775 | Msa1100730:CDS | 35.0% | |
| CAGAAAATTTCTTTGCCTGT+TGG | - | chr7_3:31053889-31053908 | Msa1100730:intron | 35.0% | |
| TTGTGTGATCTTCAACTTGT+AGG | - | chr7_3:31053282-31053301 | Msa1100730:CDS | 35.0% | |
| TGTGTGATCTTCAACTTGTA+GGG | - | chr7_3:31053283-31053302 | Msa1100730:CDS | 35.0% | |
| AATTGGAATGGTGAATATGG+AGG | - | chr7_3:31053435-31053454 | Msa1100730:CDS | 35.0% | |
| GTAAGTGAATGGAACATACA+TGG | - | chr7_3:31053469-31053488 | Msa1100730:CDS | 35.0% | |
| TTCTTCTTCATCGATCCATT+CGG | + | chr7_3:31053557-31053576 | None:intergenic | 35.0% | |
| !! | AATTCTGGCATTGGTAATTC+GGG | + | chr7_3:31053601-31053620 | None:intergenic | 35.0% |
| TATGTTGCAAATTCTGGCAT+TGG | + | chr7_3:31053610-31053629 | None:intergenic | 35.0% | |
| CATGCAAGTATCCATTAGAA+GGG | - | chr7_3:31053662-31053681 | Msa1100730:CDS | 35.0% | |
| TGAAAAAGGGGAAGAAAGAT+TGG | - | chr7_3:31053740-31053759 | Msa1100730:CDS | 35.0% | |
| AGATTGGAAATGGAAGAGTA+AGG | - | chr7_3:31053756-31053775 | Msa1100730:CDS | 35.0% | |
| CAGAAAATTTCTTTGCCTGT+TGG | - | chr7_3:31053889-31053908 | Msa1100730:intron | 35.0% | |
| GTAAGGTGAGCCTATTCTAA+TGG | - | chr7_3:31053159-31053178 | Msa1100730:exon | 40.0% | |
| ! | GGGTTCCTTGATTTTGCTTT+TGG | + | chr7_3:31053349-31053368 | None:intergenic | 40.0% |
| TCAAGGAACCCAAAGAAGAA+TGG | - | chr7_3:31053358-31053377 | Msa1100730:CDS | 40.0% | |
| CTAGGCGAAAAAATGGGTAA+AGG | - | chr7_3:31053406-31053425 | Msa1100730:CDS | 40.0% | |
| AAGACGACGATGTAAGTGAA+TGG | - | chr7_3:31053458-31053477 | Msa1100730:CDS | 40.0% | |
| GGACAGATTTATTTCCCGAA+TGG | - | chr7_3:31053539-31053558 | Msa1100730:CDS | 40.0% | |
| TCTTCTTCATCGATCCATTC+GGG | + | chr7_3:31053556-31053575 | None:intergenic | 40.0% | |
| ! | ATTGGTAATTCGGGACATGT+TGG | + | chr7_3:31053592-31053611 | None:intergenic | 40.0% |
| ! | CCTTCTAATGGATACTTGCA+TGG | + | chr7_3:31053664-31053683 | None:intergenic | 40.0% |
| CCATGCAAGTATCCATTAGA+AGG | - | chr7_3:31053661-31053680 | Msa1100730:CDS | 40.0% | |
| CAAGTATCCATTAGAAGGGT+GGG | - | chr7_3:31053666-31053685 | Msa1100730:CDS | 40.0% | |
| AAGTATCCATTAGAAGGGTG+GGG | - | chr7_3:31053667-31053686 | Msa1100730:CDS | 40.0% | |
| AGGGGAAGAAAGATTGGAAA+TGG | - | chr7_3:31053746-31053765 | Msa1100730:CDS | 40.0% | |
| ! | GGAAGAGTAAGGTTGTGTTT+TGG | - | chr7_3:31053767-31053786 | Msa1100730:CDS | 40.0% |
| GAGTAAGTGTAGACCAATGT+TGG | - | chr7_3:31053789-31053808 | Msa1100730:CDS | 40.0% | |
| !! | CAATTTGGCTTTGCCTCTAT+GGG | - | chr7_3:31053918-31053937 | Msa1100730:intron | 40.0% |
| TACATACCTTGTTCCCATAG+AGG | + | chr7_3:31053934-31053953 | None:intergenic | 40.0% | |
| GTAAGGTGAGCCTATTCTAA+TGG | - | chr7_3:31053159-31053178 | Msa1100730:exon | 40.0% | |
| ! | GGGTTCCTTGATTTTGCTTT+TGG | + | chr7_3:31053349-31053368 | None:intergenic | 40.0% |
| TCAAGGAACCCAAAGAAGAA+TGG | - | chr7_3:31053358-31053377 | Msa1100730:CDS | 40.0% | |
| CTAGGCGAAAAAATGGGTAA+AGG | - | chr7_3:31053406-31053425 | Msa1100730:CDS | 40.0% | |
| AAGACGACGATGTAAGTGAA+TGG | - | chr7_3:31053458-31053477 | Msa1100730:CDS | 40.0% | |
| GGACAGATTTATTTCCCGAA+TGG | - | chr7_3:31053539-31053558 | Msa1100730:CDS | 40.0% | |
| TCTTCTTCATCGATCCATTC+GGG | + | chr7_3:31053556-31053575 | None:intergenic | 40.0% | |
| ! | ATTGGTAATTCGGGACATGT+TGG | + | chr7_3:31053592-31053611 | None:intergenic | 40.0% |
| ! | CCTTCTAATGGATACTTGCA+TGG | + | chr7_3:31053664-31053683 | None:intergenic | 40.0% |
| CCATGCAAGTATCCATTAGA+AGG | - | chr7_3:31053661-31053680 | Msa1100730:CDS | 40.0% | |
| CAAGTATCCATTAGAAGGGT+GGG | - | chr7_3:31053666-31053685 | Msa1100730:CDS | 40.0% | |
| AAGTATCCATTAGAAGGGTG+GGG | - | chr7_3:31053667-31053686 | Msa1100730:CDS | 40.0% | |
| AGGGGAAGAAAGATTGGAAA+TGG | - | chr7_3:31053746-31053765 | Msa1100730:CDS | 40.0% | |
| ! | GGAAGAGTAAGGTTGTGTTT+TGG | - | chr7_3:31053767-31053786 | Msa1100730:CDS | 40.0% |
| GAGTAAGTGTAGACCAATGT+TGG | - | chr7_3:31053789-31053808 | Msa1100730:CDS | 40.0% | |
| !! | CAATTTGGCTTTGCCTCTAT+GGG | - | chr7_3:31053918-31053937 | Msa1100730:intron | 40.0% |
| TACATACCTTGTTCCCATAG+AGG | + | chr7_3:31053934-31053953 | None:intergenic | 40.0% | |
| GTGAGCCTATTCTAATGGCA+TGG | - | chr7_3:31053164-31053183 | Msa1100730:exon | 45.0% | |
| GGATGCCATGCCATTAGAAT+AGG | + | chr7_3:31053172-31053191 | None:intergenic | 45.0% | |
| GCAAGTATCCATTAGAAGGG+TGG | - | chr7_3:31053665-31053684 | Msa1100730:CDS | 45.0% | |
| AGTATCCATTAGAAGGGTGG+GGG | - | chr7_3:31053668-31053687 | Msa1100730:CDS | 45.0% | |
| !! | GCAATTTGGCTTTGCCTCTA+TGG | - | chr7_3:31053917-31053936 | Msa1100730:intron | 45.0% |
| GTGAGCCTATTCTAATGGCA+TGG | - | chr7_3:31053164-31053183 | Msa1100730:exon | 45.0% | |
| GGATGCCATGCCATTAGAAT+AGG | + | chr7_3:31053172-31053191 | None:intergenic | 45.0% | |
| GCAAGTATCCATTAGAAGGG+TGG | - | chr7_3:31053665-31053684 | Msa1100730:CDS | 45.0% | |
| AGTATCCATTAGAAGGGTGG+GGG | - | chr7_3:31053668-31053687 | Msa1100730:CDS | 45.0% | |
| !! | GCAATTTGGCTTTGCCTCTA+TGG | - | chr7_3:31053917-31053936 | Msa1100730:intron | 45.0% |
| ! | GGTGGGGGAGAGAAGTTTTA+AGG | - | chr7_3:31053683-31053702 | Msa1100730:CDS | 50.0% |
| GCCTGTTGGGTCTTGCAATT+TGG | - | chr7_3:31053903-31053922 | Msa1100730:intron | 50.0% | |
| GCCAAATTGCAAGACCCAAC+AGG | + | chr7_3:31053907-31053926 | None:intergenic | 50.0% | |
| GCTTTGCCTCTATGGGAACA+AGG | - | chr7_3:31053925-31053944 | Msa1100730:intron | 50.0% | |
| ! | GGTGGGGGAGAGAAGTTTTA+AGG | - | chr7_3:31053683-31053702 | Msa1100730:CDS | 50.0% |
| GCCTGTTGGGTCTTGCAATT+TGG | - | chr7_3:31053903-31053922 | Msa1100730:intron | 50.0% | |
| GCCAAATTGCAAGACCCAAC+AGG | + | chr7_3:31053907-31053926 | None:intergenic | 50.0% | |
| GCTTTGCCTCTATGGGAACA+AGG | - | chr7_3:31053925-31053944 | Msa1100730:intron | 50.0% | |
| TCTCTCCCCCACCCTTCTAA+TGG | + | chr7_3:31053676-31053695 | None:intergenic | 55.0% | |
| TCTCTCCCCCACCCTTCTAA+TGG | + | chr7_3:31053676-31053695 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 31053146 | 31054021 | 31053146 | ID=Msa1100730;Name=Msa1100730 |
| chr7_3 | mRNA | 31053146 | 31054021 | 31053146 | ID=Msa1100730-mRNA-1;Parent=Msa1100730;Name=Msa1100730-mRNA-1;_AED=0.01;_eAED=0.03;_QI=0|0|0.5|1|1|1|2|19|238 |
| chr7_3 | exon | 31053146 | 31053863 | 31053146 | ID=Msa1100730-mRNA-1:exon:6580;Parent=Msa1100730-mRNA-1 |
| chr7_3 | exon | 31054004 | 31054021 | 31054004 | ID=Msa1100730-mRNA-1:exon:6579;Parent=Msa1100730-mRNA-1 |
| chr7_3 | CDS | 31054004 | 31054021 | 31054004 | ID=Msa1100730-mRNA-1:cds;Parent=Msa1100730-mRNA-1 |
| chr7_3 | CDS | 31053165 | 31053863 | 31053165 | ID=Msa1100730-mRNA-1:cds;Parent=Msa1100730-mRNA-1 |
| chr7_3 | three_prime_UTR | 31053146 | 31053164 | 31053146 | ID=Msa1100730-mRNA-1:three_prime_utr;Parent=Msa1100730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
