Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392380 | XP_003598051.1 | 98.322 | 298 | 5 | 0 | 1 | 298 | 1 | 298 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392380 | sp|Q9T0F7|GXM2_ARATH | 61.204 | 299 | 99 | 4 | 1 | 298 | 1 | 283 | 8.02e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392380 | G7J059 | 98.322 | 298 | 5 | 0 | 1 | 298 | 1 | 298 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0392380 | 0.807543 | 4.801843e-50 | -8.615850e-47 |
| Msa0002710 | Msa0392380 | 0.806791 | 6.928828e-50 | -8.615850e-47 |
| Msa0025330 | Msa0392380 | 0.803542 | 3.316499e-49 | -8.615850e-47 |
| Msa0048540 | Msa0392380 | 0.819057 | 1.417996e-52 | -8.615850e-47 |
| Msa0072900 | Msa0392380 | 0.809283 | 2.042845e-50 | -8.615850e-47 |
| Msa0081520 | Msa0392380 | 0.853008 | 3.174231e-61 | -8.615850e-47 |
| Msa0087470 | Msa0392380 | 0.801295 | 9.629822e-49 | -8.615850e-47 |
| Msa0097090 | Msa0392380 | 0.804733 | 1.874625e-49 | -8.615850e-47 |
| Msa0108160 | Msa0392380 | 0.834654 | 2.645543e-56 | -8.615850e-47 |
| Msa0121090 | Msa0392380 | 0.802991 | 4.314370e-49 | -8.615850e-47 |
| Msa0136650 | Msa0392380 | 0.816021 | 6.852725e-52 | -8.615850e-47 |
| Msa0173890 | Msa0392380 | 0.836237 | 1.052595e-56 | -8.615850e-47 |
| Msa0174450 | Msa0392380 | 0.870788 | 1.120126e-66 | -8.615850e-47 |
| Msa0193850 | Msa0392380 | 0.810853 | 9.374293e-51 | -8.615850e-47 |
| Msa0199960 | Msa0392380 | 0.809600 | 1.746579e-50 | -8.615850e-47 |
| Msa0205840 | Msa0392380 | 0.814298 | 1.654513e-51 | -8.615850e-47 |
| Msa0206840 | Msa0392380 | 0.838913 | 2.168198e-57 | -8.615850e-47 |
| Msa0221000 | Msa0392380 | 0.802177 | 6.348815e-49 | -8.615850e-47 |
| Msa0225100 | Msa0392380 | 0.831056 | 2.072767e-55 | -8.615850e-47 |
| Msa0369790 | Msa0392380 | 0.806206 | 9.207943e-50 | -8.615850e-47 |
| Msa0373310 | Msa0392380 | 0.805720 | 1.164830e-49 | -8.615850e-47 |
| Msa0375640 | Msa0392380 | 0.805645 | 1.207695e-49 | -8.615850e-47 |
| Msa0378720 | Msa0392380 | 0.806884 | 6.622442e-50 | -8.615850e-47 |
| Msa0380620 | Msa0392380 | 0.811987 | 5.318018e-51 | -8.615850e-47 |
| Msa0389500 | Msa0392380 | 0.801484 | 8.809313e-49 | -8.615850e-47 |
| Msa0392380 | Msa0415610 | 0.810578 | 1.075060e-50 | -8.615850e-47 |
| Msa0392380 | Msa0421890 | 0.814932 | 1.197546e-51 | -8.615850e-47 |
| Msa0392380 | Msa0424140 | 0.809902 | 1.503633e-50 | -8.615850e-47 |
| Msa0392380 | Msa0424160 | 0.817683 | 2.904498e-52 | -8.615850e-47 |
| Msa0392380 | Msa0428370 | 0.803083 | 4.128856e-49 | -8.615850e-47 |
| Msa0392380 | Msa0430260 | 0.826771 | 2.259556e-54 | -8.615850e-47 |
| Msa0392380 | Msa0440320 | 0.985464 | 1.201699e-163 | -8.615850e-47 |
| Msa0392380 | Msa0464000 | 0.800507 | 1.395220e-48 | -8.615850e-47 |
| Msa0392380 | Msa0467770 | 0.819580 | 1.077917e-52 | -8.615850e-47 |
| Msa0392380 | Msa0474730 | 0.806511 | 7.940926e-50 | -8.615850e-47 |
| Msa0392380 | Msa0487500 | 0.972581 | 5.322053e-135 | -8.615850e-47 |
| Msa0392380 | Msa0488790 | 0.826041 | 3.371775e-54 | -8.615850e-47 |
| Msa0392380 | Msa0500380 | 0.802507 | 5.429072e-49 | -8.615850e-47 |
| Msa0392380 | Msa0509550 | 0.804656 | 1.945397e-49 | -8.615850e-47 |
| Msa0392380 | Msa0513160 | 0.802993 | 4.308631e-49 | -8.615850e-47 |
| Msa0392380 | Msa0514170 | 0.809220 | 2.107313e-50 | -8.615850e-47 |
| Msa0392380 | Msa0515800 | 0.809279 | 2.047207e-50 | -8.615850e-47 |
| Msa0392380 | Msa0527610 | 0.814922 | 1.203742e-51 | -8.615850e-47 |
| Msa0392380 | Msa0528570 | 0.812904 | 3.352633e-51 | -8.615850e-47 |
| Msa0392380 | Msa0546800 | 0.811480 | 6.855225e-51 | -8.615850e-47 |
| Msa0392380 | Msa0547110 | 0.804657 | 1.944240e-49 | -8.615850e-47 |
| Msa0392380 | Msa0557460 | 0.818544 | 1.854287e-52 | -8.615850e-47 |
| Msa0392380 | Msa0561410 | 0.807016 | 6.208468e-50 | -8.615850e-47 |
| Msa0392380 | Msa0571290 | 0.823172 | 1.597899e-53 | -8.615850e-47 |
| Msa0392380 | Msa0573380 | 0.819636 | 1.046625e-52 | -8.615850e-47 |
| Msa0392380 | Msa0589510 | 0.810174 | 1.314478e-50 | -8.615850e-47 |
| Msa0392380 | Msa0589690 | 0.828725 | 7.662743e-55 | -8.615850e-47 |
| Msa0392380 | Msa0608400 | 0.825662 | 4.149146e-54 | -8.615850e-47 |
| Msa0392380 | Msa0615420 | 0.843293 | 1.531778e-58 | -8.615850e-47 |
| Msa0392380 | Msa0622460 | 0.800268 | 1.560624e-48 | -8.615850e-47 |
| Msa0392380 | Msa0623910 | 0.832258 | 1.047676e-55 | -8.615850e-47 |
| Msa0392380 | Msa0626450 | 0.882144 | 1.332339e-70 | -8.615850e-47 |
| Msa0392380 | Msa0626490 | 0.878922 | 1.896703e-69 | -8.615850e-47 |
| Msa0392380 | Msa0629600 | 0.822417 | 2.395034e-53 | -8.615850e-47 |
| Msa0392380 | Msa0648900 | 0.823484 | 1.351151e-53 | -8.615850e-47 |
| Msa0392380 | Msa0664600 | 0.880286 | 6.219299e-70 | -8.615850e-47 |
| Msa0392380 | Msa0667370 | 0.834649 | 2.652152e-56 | -8.615850e-47 |
| Msa0392380 | Msa0683570 | 0.801280 | 9.699428e-49 | -8.615850e-47 |
| Msa0392380 | Msa0683960 | 0.831178 | 1.933579e-55 | -8.615850e-47 |
| Msa0392380 | Msa0697160 | 0.804605 | 1.993954e-49 | -8.615850e-47 |
| Msa0392380 | Msa0698640 | 0.861620 | 9.025782e-64 | -8.615850e-47 |
| Msa0392380 | Msa0698910 | 0.808954 | 2.402931e-50 | -8.615850e-47 |
| Msa0392380 | Msa0725770 | 0.800480 | 1.413135e-48 | -8.615850e-47 |
| Msa0392380 | Msa0727640 | 0.812777 | 3.574646e-51 | -8.615850e-47 |
| Msa0392380 | Msa0738700 | 0.811790 | 5.868530e-51 | -8.615850e-47 |
| Msa0392380 | Msa0741220 | 0.811177 | 7.974557e-51 | -8.615850e-47 |
| Msa0392380 | Msa0742740 | 0.827576 | 1.449233e-54 | -8.615850e-47 |
| Msa0392380 | Msa0752940 | 0.800751 | 1.244524e-48 | -8.615850e-47 |
| Msa0392380 | Msa0754390 | 0.810587 | 1.070483e-50 | -8.615850e-47 |
| Msa0392380 | Msa0756490 | 0.807407 | 5.132679e-50 | -8.615850e-47 |
| Msa0392380 | Msa0756620 | 0.813811 | 2.119023e-51 | -8.615850e-47 |
| Msa0392380 | Msa0765240 | 0.824574 | 7.497559e-54 | -8.615850e-47 |
| Msa0392380 | Msa0766350 | 0.805588 | 1.241881e-49 | -8.615850e-47 |
| Msa0392380 | Msa0768990 | 0.822763 | 1.990546e-53 | -8.615850e-47 |
| Msa0392380 | Msa0783530 | 0.814100 | 1.829310e-51 | -8.615850e-47 |
| Msa0392380 | Msa0783980 | 0.802534 | 5.361132e-49 | -8.615850e-47 |
| Msa0392380 | Msa0799950 | 0.819136 | 1.360590e-52 | -8.615850e-47 |
| Msa0392380 | Msa0820390 | 0.808871 | 2.503436e-50 | -8.615850e-47 |
| Msa0392380 | Msa0823820 | 0.831060 | 2.067985e-55 | -8.615850e-47 |
| Msa0392380 | Msa0835490 | 0.817065 | 4.000671e-52 | -8.615850e-47 |
| Msa0392380 | Msa0839190 | 0.805370 | 1.379427e-49 | -8.615850e-47 |
| Msa0392380 | Msa0863010 | 0.826670 | 2.388205e-54 | -8.615850e-47 |
| Msa0392380 | Msa0875290 | 0.802701 | 4.952227e-49 | -8.615850e-47 |
| Msa0392380 | Msa0967870 | 0.814918 | 1.205944e-51 | -8.615850e-47 |
| Msa0392380 | Msa0968350 | 0.856698 | 2.698410e-62 | -8.615850e-47 |
| Msa0392380 | Msa0974060 | 0.818354 | 2.048266e-52 | -8.615850e-47 |
| Msa0392380 | Msa0981320 | 0.805364 | 1.383489e-49 | -8.615850e-47 |
| Msa0392380 | Msa0992030 | 0.804989 | 1.657872e-49 | -8.615850e-47 |
| Msa0392380 | Msa1019470 | 0.801713 | 7.909132e-49 | -8.615850e-47 |
| Msa0392380 | Msa1020480 | 0.812348 | 4.435558e-51 | -8.615850e-47 |
| Msa0392380 | Msa1020510 | 0.836999 | 6.732689e-57 | -8.615850e-47 |
| Msa0392380 | Msa1023500 | 0.826099 | 3.267068e-54 | -8.615850e-47 |
| Msa0392380 | Msa1024740 | 0.823416 | 1.401959e-53 | -8.615850e-47 |
| Msa0392380 | Msa1037550 | 0.815846 | 7.497173e-52 | -8.615850e-47 |
| Msa0392380 | Msa1063500 | 0.812884 | 3.385614e-51 | -8.615850e-47 |
| Msa0392380 | Msa1072940 | 0.804356 | 2.246610e-49 | -8.615850e-47 |
| Msa0392380 | Msa1078930 | 0.868752 | 5.170643e-66 | -8.615850e-47 |
| Msa0392380 | Msa1100730 | 0.845041 | 5.199108e-59 | -8.615850e-47 |
| Msa0392380 | Msa1106500 | 0.806250 | 9.009892e-50 | -8.615850e-47 |
| Msa0392380 | Msa1108790 | 0.828468 | 8.842392e-55 | -8.615850e-47 |
| Msa0392380 | Msa1123930 | 0.858852 | 6.198147e-63 | -8.615850e-47 |
| Msa0392380 | Msa1140210 | 0.804331 | 2.274472e-49 | -8.615850e-47 |
| Msa0392380 | Msa1160920 | 0.816993 | 4.151459e-52 | -8.615850e-47 |
| Msa0392380 | Msa1169230 | 0.848216 | 7.060566e-60 | -8.615850e-47 |
| Msa0392380 | Msa1173280 | 0.815549 | 8.731638e-52 | -8.615850e-47 |
| Msa0392380 | Msa1222590 | 0.814658 | 1.376905e-51 | -8.615850e-47 |
| Msa0392380 | Msa1227990 | 0.837342 | 5.502180e-57 | -8.615850e-47 |
| Msa0392380 | Msa1269480 | 0.800739 | 1.251500e-48 | -8.615850e-47 |
| Msa0392380 | Msa1308140 | 0.807693 | 4.462552e-50 | -8.615850e-47 |
| Msa0392380 | Msa1323040 | 0.800543 | 1.372035e-48 | -8.615850e-47 |
| Msa0392380 | Msa1327650 | 0.839586 | 1.450369e-57 | -8.615850e-47 |
| Msa0392380 | Msa1340700 | 0.831601 | 1.521542e-55 | -8.615850e-47 |
| Msa0392380 | Msa1348090 | 0.820566 | 6.410317e-53 | -8.615850e-47 |
| Msa0392380 | Msa1353460 | 0.808380 | 3.185955e-50 | -8.615850e-47 |
| Msa0392380 | Msa1356830 | 0.841713 | 4.020994e-58 | -8.615850e-47 |
| Msa0392380 | Msa1371910 | 0.803590 | 3.242321e-49 | -8.615850e-47 |
| Msa0392380 | Msa1384180 | 0.816203 | 6.240087e-52 | -8.615850e-47 |
| Msa0392380 | Msa1426070 | 0.866020 | 3.869429e-65 | -8.615850e-47 |
| Msa0392380 | Msa1430750 | 0.817619 | 3.002687e-52 | -8.615850e-47 |
| Msa0392380 | Msa1433810 | 0.803716 | 3.051887e-49 | -8.615850e-47 |
| Msa0392380 | Msa1434480 | 0.821116 | 4.790498e-53 | -8.615850e-47 |
| Msa0392380 | Msa1436420 | 0.846712 | 1.828778e-59 | -8.615850e-47 |
| Msa0392380 | Msa1437940 | 0.828716 | 7.703382e-55 | -8.615850e-47 |
| Msa0392380 | Msa1440960 | 0.877835 | 4.567916e-69 | -8.615850e-47 |
| Msa0392380 | Msa1445050 | 0.815448 | 9.196086e-52 | -8.615850e-47 |
| Msa0392380 | Msa1445190 | 0.805018 | 1.634632e-49 | -8.615850e-47 |
| Msa0392380 | Msa1459360 | 0.828341 | 9.486040e-55 | -8.615850e-47 |
| Msa0392380 | Msa1459460 | 0.806729 | 7.140023e-50 | -8.615850e-47 |
| Msa0392380 | Msa1465010 | 0.800694 | 1.278188e-48 | -8.615850e-47 |
| Msa0242490 | Msa0392380 | 0.800621 | 1.322447e-48 | -8.615850e-47 |
| Msa0243600 | Msa0392380 | 0.878631 | 2.401780e-69 | -8.615850e-47 |
| Msa0248970 | Msa0392380 | 0.814110 | 1.820540e-51 | -8.615850e-47 |
| Msa0249540 | Msa0392380 | 0.833343 | 5.632291e-56 | -8.615850e-47 |
| Msa0266180 | Msa0392380 | 0.824714 | 6.950952e-54 | -8.615850e-47 |
| Msa0267660 | Msa0392380 | 0.840685 | 7.492248e-58 | -8.615850e-47 |
| Msa0277650 | Msa0392380 | 0.812175 | 4.839228e-51 | -8.615850e-47 |
| Msa0282220 | Msa0392380 | 0.863421 | 2.518983e-64 | -8.615850e-47 |
| Msa0287740 | Msa0392380 | 0.828607 | 8.184698e-55 | -8.615850e-47 |
| Msa0288140 | Msa0392380 | 0.819418 | 1.173718e-52 | -8.615850e-47 |
| Msa0300270 | Msa0392380 | 0.811457 | 6.935301e-51 | -8.615850e-47 |
| Msa0300320 | Msa0392380 | 0.807291 | 5.429536e-50 | -8.615850e-47 |
| Msa0307270 | Msa0392380 | 0.815248 | 1.018888e-51 | -8.615850e-47 |
| Msa0314170 | Msa0392380 | 0.851979 | 6.234314e-61 | -8.615850e-47 |
| Msa0319940 | Msa0392380 | 0.852949 | 3.299896e-61 | -8.615850e-47 |
| Msa0334220 | Msa0392380 | 0.801431 | 9.031958e-49 | -8.615850e-47 |
| Msa0335800 | Msa0392380 | 0.805428 | 1.341082e-49 | -8.615850e-47 |
| Msa0337540 | Msa0392380 | 0.802146 | 6.443026e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392380 | MtrunA17_Chr3g0077611 | 98.322 | 298 | 5 | 0 | 1 | 298 | 1 | 298 | 0.0 | 613 |
| Msa0392380 | MtrunA17_Chr8g0377381 | 45.000 | 240 | 118 | 5 | 72 | 297 | 58 | 297 | 2.15e-68 | 214 |
| Msa0392380 | MtrunA17_Chr3g0122451 | 46.977 | 215 | 109 | 4 | 76 | 285 | 60 | 274 | 2.08e-66 | 209 |
| Msa0392380 | MtrunA17_Chr7g0225381 | 46.411 | 209 | 104 | 3 | 84 | 286 | 79 | 285 | 2.14e-58 | 189 |
| Msa0392380 | MtrunA17_Chr7g0225261 | 45.933 | 209 | 105 | 3 | 84 | 286 | 79 | 285 | 4.39e-58 | 188 |
| Msa0392380 | MtrunA17_Chr4g0044461 | 42.791 | 215 | 119 | 2 | 77 | 287 | 68 | 282 | 6.04e-58 | 188 |
| Msa0392380 | MtrunA17_Chr4g0044451 | 42.925 | 212 | 117 | 2 | 80 | 287 | 72 | 283 | 1.01e-55 | 182 |
| Msa0392380 | MtrunA17_Chr4g0053231 | 38.839 | 224 | 131 | 4 | 66 | 283 | 60 | 283 | 9.02e-51 | 169 |
| Msa0392380 | MtrunA17_Chr4g0057371 | 36.797 | 231 | 136 | 6 | 74 | 298 | 71 | 297 | 7.18e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0392380 | AT4G09990.1 | 61.204 | 299 | 99 | 4 | 1 | 298 | 1 | 283 | 8.16e-133 | 379 |
| Msa0392380 | AT1G33800.1 | 67.886 | 246 | 77 | 2 | 53 | 298 | 47 | 290 | 6.60e-128 | 366 |
| Msa0392380 | AT1G09610.1 | 65.079 | 252 | 80 | 4 | 52 | 298 | 34 | 282 | 5.41e-122 | 351 |
| Msa0392380 | AT1G71690.1 | 55.116 | 303 | 115 | 7 | 1 | 298 | 9 | 295 | 4.08e-113 | 328 |
| Msa0392380 | AT1G67330.1 | 50.935 | 214 | 101 | 3 | 78 | 287 | 65 | 278 | 1.49e-73 | 228 |
| Msa0392380 | AT1G27930.1 | 49.528 | 212 | 104 | 2 | 78 | 286 | 62 | 273 | 1.65e-71 | 223 |
| Msa0392380 | AT5G67210.1 | 36.029 | 272 | 157 | 6 | 18 | 283 | 30 | 290 | 1.15e-52 | 175 |
| Msa0392380 | AT3G50220.1 | 36.397 | 272 | 162 | 7 | 18 | 283 | 31 | 297 | 1.08e-50 | 170 |
| Msa0392380 | AT2G15440.1 | 37.054 | 224 | 131 | 5 | 83 | 297 | 81 | 303 | 3.27e-50 | 169 |
| Msa0392380 | AT4G24910.1 | 34.694 | 196 | 117 | 4 | 99 | 285 | 104 | 297 | 2.74e-29 | 114 |
Find 70 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCAACTTCTTGGTCTT+TGG | 0.164120 | 3_2:-5490240 | Msa0392380:CDS |
| AAAATCACCTTGCAACTTCT+TGG | 0.221414 | 3_2:-5490247 | Msa0392380:CDS |
| AAATGTGGATTAGCACTTAA+AGG | 0.223364 | 3_2:-5489997 | Msa0392380:CDS |
| AGTGATGAACTAATGAAAAT+TGG | 0.261741 | 3_2:-5490066 | Msa0392380:CDS |
| AAATCAATTTCATGGACAAT+AGG | 0.306327 | 3_2:+5489693 | None:intergenic |
| ATTGCTAGGAATAGAGAAAA+TGG | 0.307486 | 3_2:-5489862 | Msa0392380:CDS |
| TTTGTGCATGTTGGTGTTAT+AGG | 0.311759 | 3_2:+5490375 | None:intergenic |
| CCAACGTTGGGAACTTTGAT+TGG | 0.316396 | 3_2:+5490127 | None:intergenic |
| ACCAAGTCATAGGGCACGTT+TGG | 0.318589 | 3_2:-5489722 | Msa0392380:CDS |
| TCCATGTCTTGTCTTCTTCC+AGG | 0.323320 | 3_2:+5490160 | None:intergenic |
| GGGTACTTCGATGGCGCGCC+GGG | 0.332994 | 3_2:-5489916 | Msa0392380:CDS |
| TTGTGCATGTTGGTGTTATA+GGG | 0.335274 | 3_2:+5490376 | None:intergenic |
| AACTTCTTGGTCTTTGGATT+AGG | 0.336773 | 3_2:-5490234 | Msa0392380:CDS |
| ATTGGATGAGAGCTGTGTTT+TGG | 0.372588 | 3_2:+5490569 | None:intergenic |
| ACTTCAATATACCAAGTCAT+AGG | 0.375565 | 3_2:-5489732 | Msa0392380:CDS |
| ATACAGCTGGTTTGATTGCT+AGG | 0.379409 | 3_2:-5489876 | Msa0392380:CDS |
| AATCAATTTCATGGACAATA+GGG | 0.382464 | 3_2:+5489694 | None:intergenic |
| TGTTTGTTCATGATGTTGAT+AGG | 0.396580 | 3_2:-5489828 | Msa0392380:CDS |
| GATGATGACTAGTTTGAGAT+TGG | 0.409528 | 3_2:+5490551 | None:intergenic |
| TGGTTGAGAAAATGAGAAAA+TGG | 0.434558 | 3_2:+5490485 | None:intergenic |
| ATGAGTGCTATTTATACAGC+TGG | 0.441985 | 3_2:-5489889 | Msa0392380:CDS |
| TTGGTGTTTGAAGTTGTTGT+GGG | 0.443623 | 3_2:+5490462 | None:intergenic |
| TCTCTTGAATTGTTTGTTGA+GGG | 0.447760 | 3_2:+5490298 | None:intergenic |
| CTTGTCTTCTTCCAGGAAAA+CGG | 0.456850 | 3_2:+5490167 | None:intergenic |
| TGCATAATGGATTAATGCAT+TGG | 0.464703 | 3_2:+5490335 | None:intergenic |
| TTCTTTGTGAAGGTTATTTG+AGG | 0.465004 | 3_2:-5489777 | Msa0392380:CDS |
| CCAAGTCATAGGGCACGTTT+GGG | 0.466887 | 3_2:-5489721 | Msa0392380:CDS |
| TCTTTGTGAAGGTTATTTGA+GGG | 0.475343 | 3_2:-5489776 | Msa0392380:CDS |
| GGGGTACTTCGATGGCGCGC+CGG | 0.481478 | 3_2:-5489917 | Msa0392380:CDS |
| CCCAAACGTGCCCTATGACT+TGG | 0.483562 | 3_2:+5489721 | None:intergenic |
| GTTGGTGTTTGAAGTTGTTG+TGG | 0.491866 | 3_2:+5490461 | None:intergenic |
| ATCATGGTGGATGCACCAAC+GGG | 0.492498 | 3_2:-5489937 | Msa0392380:CDS |
| ATCTCTTGAATTGTTTGTTG+AGG | 0.496296 | 3_2:+5490297 | None:intergenic |
| CATGATATGATTCCAACGTT+GGG | 0.499455 | 3_2:+5490115 | None:intergenic |
| GGGAACAAGAAGGAAGGATT+AGG | 0.499937 | 3_2:-5489756 | Msa0392380:CDS |
| TGAAATTTATGATGTGGAAT+GGG | 0.503077 | 3_2:-5489965 | Msa0392380:CDS |
| TCCACATCATAAATTTCACT+TGG | 0.503817 | 3_2:+5489970 | None:intergenic |
| TCCAAGTGAAATTTATGATG+TGG | 0.511674 | 3_2:-5489971 | Msa0392380:CDS |
| GTGAAATTTATGATGTGGAA+TGG | 0.519138 | 3_2:-5489966 | Msa0392380:CDS |
| GCACCAACGGGGTACTTCGA+TGG | 0.521410 | 3_2:-5489925 | Msa0392380:CDS |
| TGTGGAATGGGATGTGATCA+TGG | 0.525871 | 3_2:-5489953 | Msa0392380:CDS |
| CATCATTGAACTACGGTGGC+CGG | 0.528792 | 3_2:-5490191 | Msa0392380:CDS |
| ATTAATGCATTGGCTAATGA+TGG | 0.530150 | 3_2:+5490345 | None:intergenic |
| CTTCTTCCAGGAAAACGGTC+CGG | 0.530964 | 3_2:+5490172 | None:intergenic |
| ACATGATATGATTCCAACGT+TGG | 0.536855 | 3_2:+5490114 | None:intergenic |
| ATTTGAGGGAACAAGAAGGA+AGG | 0.541340 | 3_2:-5489762 | Msa0392380:CDS |
| ACTTCGATGGCGCGCCGGGG+AGG | 0.549464 | 3_2:-5489912 | Msa0392380:CDS |
| GTGTTTGAAGTTGTTGTGGG+TGG | 0.550586 | 3_2:+5490465 | None:intergenic |
| GAAAATTGGAATGGAACAAG+AGG | 0.553174 | 3_2:-5490052 | Msa0392380:CDS |
| TCCTGGAAGAAGACAAGACA+TGG | 0.567326 | 3_2:-5490161 | Msa0392380:CDS |
| GTTGGTGTTATAGGGAGTGA+AGG | 0.571518 | 3_2:+5490384 | None:intergenic |
| TGAACTAATGAAAATTGGAA+TGG | 0.575241 | 3_2:-5490061 | Msa0392380:CDS |
| AATGCATTGGCTAATGATGG+AGG | 0.575854 | 3_2:+5490348 | None:intergenic |
| CCAATCAAAGTTCCCAACGT+TGG | 0.578373 | 3_2:-5490127 | Msa0392380:CDS |
| CTCTTGAATTGTTTGTTGAG+GGG | 0.579049 | 3_2:+5490299 | None:intergenic |
| ATGCATTGGCTAATGATGGA+GGG | 0.579142 | 3_2:+5490349 | None:intergenic |
| CTTCAATATACCAAGTCATA+GGG | 0.581013 | 3_2:-5489731 | Msa0392380:CDS |
| GGTTATTTGAGGGAACAAGA+AGG | 0.586352 | 3_2:-5489766 | Msa0392380:CDS |
| TGATGTTGATAGGAAAGTTG+AGG | 0.590781 | 3_2:-5489818 | Msa0392380:CDS |
| GATCATGGTGGATGCACCAA+CGG | 0.605400 | 3_2:-5489938 | Msa0392380:CDS |
| TTGGTGTTATAGGGAGTGAA+GGG | 0.609114 | 3_2:+5490385 | None:intergenic |
| CCAAAGACCAAGAAGTTGCA+AGG | 0.614426 | 3_2:+5490240 | None:intergenic |
| GCGCCATCGAAGTACCCCGT+TGG | 0.633771 | 3_2:+5489922 | None:intergenic |
| TAAATAGCACTCATCCTCCC+CGG | 0.635229 | 3_2:+5489898 | None:intergenic |
| ATGTGGACATCATTGAACTA+CGG | 0.637354 | 3_2:-5490198 | Msa0392380:CDS |
| TAGGTCATGATAGTCTCATG+TGG | 0.666366 | 3_2:-5490215 | Msa0392380:CDS |
| TGGACATCATTGAACTACGG+TGG | 0.678674 | 3_2:-5490195 | Msa0392380:CDS |
| GGTACTTCGATGGCGCGCCG+GGG | 0.680331 | 3_2:-5489915 | Msa0392380:CDS |
| GGAATGGGATGTGATCATGG+TGG | 0.725748 | 3_2:-5489950 | Msa0392380:CDS |
| TCATGGTGGATGCACCAACG+GGG | 0.763267 | 3_2:-5489936 | Msa0392380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTTTTGAAGAACTT+TGG | + | chr3_2:5490018-5490037 | None:intergenic | 20.0% |
| !!! | TGATTTTTTTTGAAGAACTT+TGG | + | chr3_2:5490018-5490037 | None:intergenic | 20.0% |
| !! | TTTCTTGTGATGAGATTTTT+GGG | + | chr3_2:5489848-5489867 | None:intergenic | 25.0% |
| !!! | TGATTTTTGTTGTTGCATAA+TGG | + | chr3_2:5489959-5489978 | None:intergenic | 25.0% |
| ! | AGTGATGAACTAATGAAAAT+TGG | - | chr3_2:5490212-5490231 | Msa0392380:CDS | 25.0% |
| ! | TGAACTAATGAAAATTGGAA+TGG | - | chr3_2:5490217-5490236 | Msa0392380:CDS | 25.0% |
| !!! | ATCCACATTTTGAAAATCTT+GGG | + | chr3_2:5490271-5490290 | None:intergenic | 25.0% |
| !!! | AATCCACATTTTGAAAATCT+TGG | + | chr3_2:5490272-5490291 | None:intergenic | 25.0% |
| ! | TGAAATTTATGATGTGGAAT+GGG | - | chr3_2:5490313-5490332 | Msa0392380:CDS | 25.0% |
| !! | TTTCTTGTGATGAGATTTTT+GGG | + | chr3_2:5489848-5489867 | None:intergenic | 25.0% |
| !!! | TGATTTTTGTTGTTGCATAA+TGG | + | chr3_2:5489959-5489978 | None:intergenic | 25.0% |
| ! | AGTGATGAACTAATGAAAAT+TGG | - | chr3_2:5490212-5490231 | Msa0392380:CDS | 25.0% |
| ! | TGAACTAATGAAAATTGGAA+TGG | - | chr3_2:5490217-5490236 | Msa0392380:CDS | 25.0% |
| !!! | ATCCACATTTTGAAAATCTT+GGG | + | chr3_2:5490271-5490290 | None:intergenic | 25.0% |
| !!! | AATCCACATTTTGAAAATCT+TGG | + | chr3_2:5490272-5490291 | None:intergenic | 25.0% |
| ! | TGAAATTTATGATGTGGAAT+GGG | - | chr3_2:5490313-5490332 | Msa0392380:CDS | 25.0% |
| TGGTTGAGAAAATGAGAAAA+TGG | + | chr3_2:5489796-5489815 | None:intergenic | 30.0% | |
| ! | GTTTCTTGTGATGAGATTTT+TGG | + | chr3_2:5489849-5489868 | None:intergenic | 30.0% |
| !! | ATTAATGCATTGGCTAATGA+TGG | + | chr3_2:5489936-5489955 | None:intergenic | 30.0% |
| !! | TGCATAATGGATTAATGCAT+TGG | + | chr3_2:5489946-5489965 | None:intergenic | 30.0% |
| ! | TCTCTTGAATTGTTTGTTGA+GGG | + | chr3_2:5489983-5490002 | None:intergenic | 30.0% |
| ! | ATCTCTTGAATTGTTTGTTG+AGG | + | chr3_2:5489984-5490003 | None:intergenic | 30.0% |
| !! | AAATGTGGATTAGCACTTAA+AGG | - | chr3_2:5490281-5490300 | Msa0392380:CDS | 30.0% |
| TCCAAGTGAAATTTATGATG+TGG | - | chr3_2:5490307-5490326 | Msa0392380:CDS | 30.0% | |
| TCCACATCATAAATTTCACT+TGG | + | chr3_2:5490311-5490330 | None:intergenic | 30.0% | |
| GTGAAATTTATGATGTGGAA+TGG | - | chr3_2:5490312-5490331 | Msa0392380:CDS | 30.0% | |
| ATTGCTAGGAATAGAGAAAA+TGG | - | chr3_2:5490416-5490435 | Msa0392380:CDS | 30.0% | |
| TGTTTGTTCATGATGTTGAT+AGG | - | chr3_2:5490450-5490469 | Msa0392380:CDS | 30.0% | |
| ! | AGTTGAGGATCAATTTTCAA+AGG | - | chr3_2:5490475-5490494 | Msa0392380:CDS | 30.0% |
| TTCTTTGTGAAGGTTATTTG+AGG | - | chr3_2:5490501-5490520 | Msa0392380:CDS | 30.0% | |
| TCTTTGTGAAGGTTATTTGA+GGG | - | chr3_2:5490502-5490521 | Msa0392380:CDS | 30.0% | |
| ACTTCAATATACCAAGTCAT+AGG | - | chr3_2:5490546-5490565 | Msa0392380:CDS | 30.0% | |
| CTTCAATATACCAAGTCATA+GGG | - | chr3_2:5490547-5490566 | Msa0392380:CDS | 30.0% | |
| TGGTTGAGAAAATGAGAAAA+TGG | + | chr3_2:5489796-5489815 | None:intergenic | 30.0% | |
| ! | GTTTCTTGTGATGAGATTTT+TGG | + | chr3_2:5489849-5489868 | None:intergenic | 30.0% |
| !! | ATTAATGCATTGGCTAATGA+TGG | + | chr3_2:5489936-5489955 | None:intergenic | 30.0% |
| !! | TGCATAATGGATTAATGCAT+TGG | + | chr3_2:5489946-5489965 | None:intergenic | 30.0% |
| ! | TCTCTTGAATTGTTTGTTGA+GGG | + | chr3_2:5489983-5490002 | None:intergenic | 30.0% |
| ! | ATCTCTTGAATTGTTTGTTG+AGG | + | chr3_2:5489984-5490003 | None:intergenic | 30.0% |
| !! | AAATGTGGATTAGCACTTAA+AGG | - | chr3_2:5490281-5490300 | Msa0392380:CDS | 30.0% |
| TCCAAGTGAAATTTATGATG+TGG | - | chr3_2:5490307-5490326 | Msa0392380:CDS | 30.0% | |
| TCCACATCATAAATTTCACT+TGG | + | chr3_2:5490311-5490330 | None:intergenic | 30.0% | |
| GTGAAATTTATGATGTGGAA+TGG | - | chr3_2:5490312-5490331 | Msa0392380:CDS | 30.0% | |
| ATTGCTAGGAATAGAGAAAA+TGG | - | chr3_2:5490416-5490435 | Msa0392380:CDS | 30.0% | |
| TGTTTGTTCATGATGTTGAT+AGG | - | chr3_2:5490450-5490469 | Msa0392380:CDS | 30.0% | |
| ! | AGTTGAGGATCAATTTTCAA+AGG | - | chr3_2:5490475-5490494 | Msa0392380:CDS | 30.0% |
| TTCTTTGTGAAGGTTATTTG+AGG | - | chr3_2:5490501-5490520 | Msa0392380:CDS | 30.0% | |
| TCTTTGTGAAGGTTATTTGA+GGG | - | chr3_2:5490502-5490521 | Msa0392380:CDS | 30.0% | |
| ACTTCAATATACCAAGTCAT+AGG | - | chr3_2:5490546-5490565 | Msa0392380:CDS | 30.0% | |
| CTTCAATATACCAAGTCATA+GGG | - | chr3_2:5490547-5490566 | Msa0392380:CDS | 30.0% | |
| !! | GATGATGACTAGTTTGAGAT+TGG | + | chr3_2:5489730-5489749 | None:intergenic | 35.0% |
| ! | TTGGTGTTTGAAGTTGTTGT+GGG | + | chr3_2:5489819-5489838 | None:intergenic | 35.0% |
| !!! | TGAGATTTTTGGGTCATTGT+TGG | + | chr3_2:5489838-5489857 | None:intergenic | 35.0% |
| !! | TTGTGCATGTTGGTGTTATA+GGG | + | chr3_2:5489905-5489924 | None:intergenic | 35.0% |
| !! | TTTGTGCATGTTGGTGTTAT+AGG | + | chr3_2:5489906-5489925 | None:intergenic | 35.0% |
| ! | CTCTTGAATTGTTTGTTGAG+GGG | + | chr3_2:5489982-5490001 | None:intergenic | 35.0% |
| AAAATCACCTTGCAACTTCT+TGG | - | chr3_2:5490031-5490050 | Msa0392380:CDS | 35.0% | |
| ! | AACTTCTTGGTCTTTGGATT+AGG | - | chr3_2:5490044-5490063 | Msa0392380:CDS | 35.0% |
| ATGTGGACATCATTGAACTA+CGG | - | chr3_2:5490080-5490099 | Msa0392380:CDS | 35.0% | |
| CATGATATGATTCCAACGTT+GGG | + | chr3_2:5490166-5490185 | None:intergenic | 35.0% | |
| ACATGATATGATTCCAACGT+TGG | + | chr3_2:5490167-5490186 | None:intergenic | 35.0% | |
| GAAAATTGGAATGGAACAAG+AGG | - | chr3_2:5490226-5490245 | Msa0392380:CDS | 35.0% | |
| ! | GACCCAAGATTTTCAAAATG+TGG | - | chr3_2:5490266-5490285 | Msa0392380:CDS | 35.0% |
| !! | ATGAGTGCTATTTATACAGC+TGG | - | chr3_2:5490389-5490408 | Msa0392380:CDS | 35.0% |
| ! | TGATGTTGATAGGAAAGTTG+AGG | - | chr3_2:5490460-5490479 | Msa0392380:CDS | 35.0% |
| ! | TCAAAGGCTTTTCTTTGTGA+AGG | - | chr3_2:5490491-5490510 | Msa0392380:CDS | 35.0% |
| !! | GATGATGACTAGTTTGAGAT+TGG | + | chr3_2:5489730-5489749 | None:intergenic | 35.0% |
| ! | TTGGTGTTTGAAGTTGTTGT+GGG | + | chr3_2:5489819-5489838 | None:intergenic | 35.0% |
| !!! | TGAGATTTTTGGGTCATTGT+TGG | + | chr3_2:5489838-5489857 | None:intergenic | 35.0% |
| !! | TTGTGCATGTTGGTGTTATA+GGG | + | chr3_2:5489905-5489924 | None:intergenic | 35.0% |
| !! | TTTGTGCATGTTGGTGTTAT+AGG | + | chr3_2:5489906-5489925 | None:intergenic | 35.0% |
| ! | CTCTTGAATTGTTTGTTGAG+GGG | + | chr3_2:5489982-5490001 | None:intergenic | 35.0% |
| AAAATCACCTTGCAACTTCT+TGG | - | chr3_2:5490031-5490050 | Msa0392380:CDS | 35.0% | |
| ! | AACTTCTTGGTCTTTGGATT+AGG | - | chr3_2:5490044-5490063 | Msa0392380:CDS | 35.0% |
| ATGTGGACATCATTGAACTA+CGG | - | chr3_2:5490080-5490099 | Msa0392380:CDS | 35.0% | |
| CATGATATGATTCCAACGTT+GGG | + | chr3_2:5490166-5490185 | None:intergenic | 35.0% | |
| ACATGATATGATTCCAACGT+TGG | + | chr3_2:5490167-5490186 | None:intergenic | 35.0% | |
| GAAAATTGGAATGGAACAAG+AGG | - | chr3_2:5490226-5490245 | Msa0392380:CDS | 35.0% | |
| ! | GACCCAAGATTTTCAAAATG+TGG | - | chr3_2:5490266-5490285 | Msa0392380:CDS | 35.0% |
| !! | ATGAGTGCTATTTATACAGC+TGG | - | chr3_2:5490389-5490408 | Msa0392380:CDS | 35.0% |
| ! | TGATGTTGATAGGAAAGTTG+AGG | - | chr3_2:5490460-5490479 | Msa0392380:CDS | 35.0% |
| ! | TCAAAGGCTTTTCTTTGTGA+AGG | - | chr3_2:5490491-5490510 | Msa0392380:CDS | 35.0% |
| ! | ATTGGATGAGAGCTGTGTTT+TGG | + | chr3_2:5489712-5489731 | None:intergenic | 40.0% |
| ! | GTTGGTGTTTGAAGTTGTTG+TGG | + | chr3_2:5489820-5489839 | None:intergenic | 40.0% |
| !! | TTGGTGTTATAGGGAGTGAA+GGG | + | chr3_2:5489896-5489915 | None:intergenic | 40.0% |
| !! | ATGCATTGGCTAATGATGGA+GGG | + | chr3_2:5489932-5489951 | None:intergenic | 40.0% |
| !! | AATGCATTGGCTAATGATGG+AGG | + | chr3_2:5489933-5489952 | None:intergenic | 40.0% |
| TAGGTCATGATAGTCTCATG+TGG | - | chr3_2:5490063-5490082 | Msa0392380:CDS | 40.0% | |
| CTTGTCTTCTTCCAGGAAAA+CGG | + | chr3_2:5490114-5490133 | None:intergenic | 40.0% | |
| !! | ATACAGCTGGTTTGATTGCT+AGG | - | chr3_2:5490402-5490421 | Msa0392380:CDS | 40.0% |
| GGTTATTTGAGGGAACAAGA+AGG | - | chr3_2:5490512-5490531 | Msa0392380:CDS | 40.0% | |
| ATTTGAGGGAACAAGAAGGA+AGG | - | chr3_2:5490516-5490535 | Msa0392380:CDS | 40.0% | |
| ! | ATTGGATGAGAGCTGTGTTT+TGG | + | chr3_2:5489712-5489731 | None:intergenic | 40.0% |
| ! | GTTGGTGTTTGAAGTTGTTG+TGG | + | chr3_2:5489820-5489839 | None:intergenic | 40.0% |
| !! | TTGGTGTTATAGGGAGTGAA+GGG | + | chr3_2:5489896-5489915 | None:intergenic | 40.0% |
| !! | ATGCATTGGCTAATGATGGA+GGG | + | chr3_2:5489932-5489951 | None:intergenic | 40.0% |
| !! | AATGCATTGGCTAATGATGG+AGG | + | chr3_2:5489933-5489952 | None:intergenic | 40.0% |
| TAGGTCATGATAGTCTCATG+TGG | - | chr3_2:5490063-5490082 | Msa0392380:CDS | 40.0% | |
| CTTGTCTTCTTCCAGGAAAA+CGG | + | chr3_2:5490114-5490133 | None:intergenic | 40.0% | |
| !! | ATACAGCTGGTTTGATTGCT+AGG | - | chr3_2:5490402-5490421 | Msa0392380:CDS | 40.0% |
| GGTTATTTGAGGGAACAAGA+AGG | - | chr3_2:5490512-5490531 | Msa0392380:CDS | 40.0% | |
| ATTTGAGGGAACAAGAAGGA+AGG | - | chr3_2:5490516-5490535 | Msa0392380:CDS | 40.0% | |
| ! | GTGTTTGAAGTTGTTGTGGG+TGG | + | chr3_2:5489816-5489835 | None:intergenic | 45.0% |
| !! | GTTGGTGTTATAGGGAGTGA+AGG | + | chr3_2:5489897-5489916 | None:intergenic | 45.0% |
| !!! | GGAGGGTTTTTTGTGCATGT+TGG | + | chr3_2:5489915-5489934 | None:intergenic | 45.0% |
| CCAAAGACCAAGAAGTTGCA+AGG | + | chr3_2:5490041-5490060 | None:intergenic | 45.0% | |
| ! | CCTTGCAACTTCTTGGTCTT+TGG | - | chr3_2:5490038-5490057 | Msa0392380:CDS | 45.0% |
| TGGACATCATTGAACTACGG+TGG | - | chr3_2:5490083-5490102 | Msa0392380:CDS | 45.0% | |
| TCCTGGAAGAAGACAAGACA+TGG | - | chr3_2:5490117-5490136 | Msa0392380:CDS | 45.0% | |
| TCCATGTCTTGTCTTCTTCC+AGG | + | chr3_2:5490121-5490140 | None:intergenic | 45.0% | |
| CCAACGTTGGGAACTTTGAT+TGG | + | chr3_2:5490154-5490173 | None:intergenic | 45.0% | |
| CCAATCAAAGTTCCCAACGT+TGG | - | chr3_2:5490151-5490170 | Msa0392380:CDS | 45.0% | |
| TGTGGAATGGGATGTGATCA+TGG | - | chr3_2:5490325-5490344 | Msa0392380:CDS | 45.0% | |
| TAAATAGCACTCATCCTCCC+CGG | + | chr3_2:5490383-5490402 | None:intergenic | 45.0% | |
| GGGAACAAGAAGGAAGGATT+AGG | - | chr3_2:5490522-5490541 | Msa0392380:CDS | 45.0% | |
| ! | GTGTTTGAAGTTGTTGTGGG+TGG | + | chr3_2:5489816-5489835 | None:intergenic | 45.0% |
| !! | GTTGGTGTTATAGGGAGTGA+AGG | + | chr3_2:5489897-5489916 | None:intergenic | 45.0% |
| !!! | GGAGGGTTTTTTGTGCATGT+TGG | + | chr3_2:5489915-5489934 | None:intergenic | 45.0% |
| CCAAAGACCAAGAAGTTGCA+AGG | + | chr3_2:5490041-5490060 | None:intergenic | 45.0% | |
| ! | CCTTGCAACTTCTTGGTCTT+TGG | - | chr3_2:5490038-5490057 | Msa0392380:CDS | 45.0% |
| TGGACATCATTGAACTACGG+TGG | - | chr3_2:5490083-5490102 | Msa0392380:CDS | 45.0% | |
| TCCTGGAAGAAGACAAGACA+TGG | - | chr3_2:5490117-5490136 | Msa0392380:CDS | 45.0% | |
| TCCATGTCTTGTCTTCTTCC+AGG | + | chr3_2:5490121-5490140 | None:intergenic | 45.0% | |
| CCAACGTTGGGAACTTTGAT+TGG | + | chr3_2:5490154-5490173 | None:intergenic | 45.0% | |
| CCAATCAAAGTTCCCAACGT+TGG | - | chr3_2:5490151-5490170 | Msa0392380:CDS | 45.0% | |
| TGTGGAATGGGATGTGATCA+TGG | - | chr3_2:5490325-5490344 | Msa0392380:CDS | 45.0% | |
| TAAATAGCACTCATCCTCCC+CGG | + | chr3_2:5490383-5490402 | None:intergenic | 45.0% | |
| GGGAACAAGAAGGAAGGATT+AGG | - | chr3_2:5490522-5490541 | Msa0392380:CDS | 45.0% | |
| CATCATTGAACTACGGTGGC+CGG | - | chr3_2:5490087-5490106 | Msa0392380:CDS | 50.0% | |
| CTTCTTCCAGGAAAACGGTC+CGG | + | chr3_2:5490109-5490128 | None:intergenic | 50.0% | |
| GGAATGGGATGTGATCATGG+TGG | - | chr3_2:5490328-5490347 | Msa0392380:CDS | 50.0% | |
| !! | GATCATGGTGGATGCACCAA+CGG | - | chr3_2:5490340-5490359 | Msa0392380:CDS | 50.0% |
| !! | ATCATGGTGGATGCACCAAC+GGG | - | chr3_2:5490341-5490360 | Msa0392380:CDS | 50.0% |
| ACCAAGTCATAGGGCACGTT+TGG | - | chr3_2:5490556-5490575 | Msa0392380:CDS | 50.0% | |
| CCAAGTCATAGGGCACGTTT+GGG | - | chr3_2:5490557-5490576 | Msa0392380:CDS | 50.0% | |
| CATCATTGAACTACGGTGGC+CGG | - | chr3_2:5490087-5490106 | Msa0392380:CDS | 50.0% | |
| CTTCTTCCAGGAAAACGGTC+CGG | + | chr3_2:5490109-5490128 | None:intergenic | 50.0% | |
| GGAATGGGATGTGATCATGG+TGG | - | chr3_2:5490328-5490347 | Msa0392380:CDS | 50.0% | |
| !! | GATCATGGTGGATGCACCAA+CGG | - | chr3_2:5490340-5490359 | Msa0392380:CDS | 50.0% |
| !! | ATCATGGTGGATGCACCAAC+GGG | - | chr3_2:5490341-5490360 | Msa0392380:CDS | 50.0% |
| ACCAAGTCATAGGGCACGTT+TGG | - | chr3_2:5490556-5490575 | Msa0392380:CDS | 50.0% | |
| CCAAGTCATAGGGCACGTTT+GGG | - | chr3_2:5490557-5490576 | Msa0392380:CDS | 50.0% | |
| !! | TCATGGTGGATGCACCAACG+GGG | - | chr3_2:5490342-5490361 | Msa0392380:CDS | 55.0% |
| CCCAAACGTGCCCTATGACT+TGG | + | chr3_2:5490560-5490579 | None:intergenic | 55.0% | |
| !! | TCATGGTGGATGCACCAACG+GGG | - | chr3_2:5490342-5490361 | Msa0392380:CDS | 55.0% |
| CCCAAACGTGCCCTATGACT+TGG | + | chr3_2:5490560-5490579 | None:intergenic | 55.0% | |
| ! | GCACCAACGGGGTACTTCGA+TGG | - | chr3_2:5490353-5490372 | Msa0392380:CDS | 60.0% |
| ! | GCACCAACGGGGTACTTCGA+TGG | - | chr3_2:5490353-5490372 | Msa0392380:CDS | 60.0% |
| ! | GCGCCATCGAAGTACCCCGT+TGG | + | chr3_2:5490359-5490378 | None:intergenic | 65.0% |
| ! | GCGCCATCGAAGTACCCCGT+TGG | + | chr3_2:5490359-5490378 | None:intergenic | 65.0% |
| ! | CGGTGGCCGGACCGTTTTCC+TGG | - | chr3_2:5490100-5490119 | Msa0392380:CDS | 70.0% |
| ! | GGGGTACTTCGATGGCGCGC+CGG | - | chr3_2:5490361-5490380 | Msa0392380:CDS | 70.0% |
| GGGTACTTCGATGGCGCGCC+GGG | - | chr3_2:5490362-5490381 | Msa0392380:CDS | 70.0% | |
| GGTACTTCGATGGCGCGCCG+GGG | - | chr3_2:5490363-5490382 | Msa0392380:CDS | 70.0% | |
| ! | CGGTGGCCGGACCGTTTTCC+TGG | - | chr3_2:5490100-5490119 | Msa0392380:CDS | 70.0% |
| ! | GGGGTACTTCGATGGCGCGC+CGG | - | chr3_2:5490361-5490380 | Msa0392380:CDS | 70.0% |
| GGGTACTTCGATGGCGCGCC+GGG | - | chr3_2:5490362-5490381 | Msa0392380:CDS | 70.0% | |
| GGTACTTCGATGGCGCGCCG+GGG | - | chr3_2:5490363-5490382 | Msa0392380:CDS | 70.0% | |
| ACTTCGATGGCGCGCCGGGG+AGG | - | chr3_2:5490366-5490385 | Msa0392380:CDS | 75.0% | |
| ACTTCGATGGCGCGCCGGGG+AGG | - | chr3_2:5490366-5490385 | Msa0392380:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 5489702 | 5490598 | 5489702 | ID=Msa0392380;Name=Msa0392380 |
| chr3_2 | mRNA | 5489702 | 5490598 | 5489702 | ID=Msa0392380-mRNA-1;Parent=Msa0392380;Name=Msa0392380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|298 |
| chr3_2 | exon | 5489702 | 5490598 | 5489702 | ID=Msa0392380-mRNA-1:exon:1381;Parent=Msa0392380-mRNA-1 |
| chr3_2 | CDS | 5489702 | 5490598 | 5489702 | ID=Msa0392380-mRNA-1:cds;Parent=Msa0392380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
