AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440910 MtrunA17_Chr7g0237741 91.971 274 15 1 1 274 1 267 5.51e-170 470
Msa1440910 MtrunA17_Chr2g0323971 72.085 283 57 5 1 274 1 270 5.48e-135 382
Msa1440910 MtrunA17_Chr4g0075481 37.097 124 73 2 99 220 36 156 7.11e-19 86.3
Msa1440910 MtrunA17_Chr4g0027201 40.000 120 64 2 99 210 399 518 2.08e-17 82.0
Msa1440910 MtrunA17_Chr2g0316221 35.252 139 79 4 105 243 465 592 6.94e-17 80.5
Msa1440910 MtrunA17_Chr8g0339141 33.171 205 120 4 23 210 314 518 5.35e-16 77.8
Msa1440910 MtrunA17_Chr2g0311461 35.849 106 63 2 106 210 5 106 1.68e-15 74.7
Msa1440910 MtrunA17_Chr8g0377771 37.956 137 71 3 87 210 379 514 5.29e-15 74.7
Msa1440910 MtrunA17_Chr8g0393041 32.075 159 85 3 66 223 457 593 1.11e-14 73.6
Msa1440910 MtrunA17_Chr2g0304261 35.043 117 71 2 99 213 37 150 1.43e-14 73.6
Msa1440910 MtrunA17_Chr1g0149561 35.652 115 68 3 102 213 40 151 4.32e-14 72.0
Msa1440910 MtrunA17_Chr3g0124261 30.464 151 93 3 80 230 437 575 7.92e-14 71.2
Msa1440910 MtrunA17_Chr7g0234801 38.211 123 68 2 96 210 388 510 1.05e-13 70.9
Msa1440910 MtrunA17_Chr1g0152361 38.462 117 64 1 102 210 227 343 1.79e-13 69.7
Msa1440910 MtrunA17_Chr5g0425741 33.766 154 88 4 105 258 447 586 2.82e-13 69.7
Msa1440910 MtrunA17_Chr3g0115681 30.000 140 87 2 107 246 429 557 4.74e-13 68.9
Msa1440910 MtrunA17_Chr7g0255551 36.585 123 70 2 96 210 371 493 5.88e-13 68.6
Msa1440910 MtrunA17_Chr5g0398901 31.193 109 68 2 102 210 2 103 2.02e-12 67.0
Msa1440910 MtrunA17_Chr3g0097231 33.333 123 75 2 99 221 8 123 2.97e-12 66.2
Msa1440910 MtrunA17_Chr4g0019501 29.545 132 83 1 99 220 181 312 2.63e-11 63.2
Msa1440910 MtrunA17_Chr4g0025271 34.545 110 70 1 99 206 100 209 8.18e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440910 AT4G30480.2 56.446 287 100 4 1 273 1 276 1.73e-105 308
Msa1440910 AT4G30480.1 47.664 214 87 4 1 200 1 203 2.35e-57 182
Msa1440910 AT4G30480.3 40.000 170 77 4 1 156 1 159 1.43e-30 112
Msa1440910 AT1G62390.1 36.800 125 74 2 99 221 48 169 1.54e-18 85.9
Msa1440910 AT3G58620.2 31.081 148 89 3 78 219 419 559 1.15e-17 83.2
Msa1440910 AT3G58620.1 31.081 148 89 3 78 219 419 559 1.26e-17 82.8
Msa1440910 AT3G25230.1 38.411 151 78 3 102 244 400 543 7.56e-16 77.4
Msa1440910 AT3G25230.2 38.411 151 78 3 102 244 400 543 9.30e-16 77.4
Msa1440910 AT2G42580.1 32.174 115 71 1 105 219 461 568 1.44e-15 77.0
Msa1440910 AT1G53300.1 30.469 128 82 2 90 217 453 573 2.62e-15 76.3
Msa1440910 AT1G56090.1 37.500 104 60 2 106 208 10 109 5.53e-15 73.6
Msa1440910 AT1G56090.2 37.500 104 60 2 106 208 84 183 1.65e-14 72.8
Msa1440910 AT4G32070.2 35.200 125 76 2 99 221 48 169 2.96e-14 73.2
Msa1440910 AT4G32070.1 35.200 125 76 2 99 221 48 169 2.96e-14 73.2
Msa1440910 AT3G54010.1 31.707 123 76 1 96 210 394 516 5.67e-14 72.0
Msa1440910 AT3G54010.2 31.707 123 76 1 96 210 304 426 8.04e-14 71.6
Msa1440910 AT5G65160.1 36.190 105 60 2 104 208 472 569 8.94e-14 71.6
Msa1440910 AT2G25290.2 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1440910 AT2G25290.3 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1440910 AT2G25290.4 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1440910 AT2G25290.1 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1440910 AT5G20360.1 30.864 162 94 5 89 247 113 259 2.02e-13 70.5
Msa1440910 AT5G20360.2 30.864 162 94 5 89 247 113 259 2.02e-13 70.5
Msa1440910 AT5G20360.3 30.864 162 94 5 89 247 103 249 2.15e-13 70.5
Msa1440910 AT4G12400.1 35.780 109 63 2 102 210 2 103 2.40e-13 70.1
Msa1440910 AT4G12400.1 29.661 118 76 2 102 219 369 479 6.57e-11 62.8
Msa1440910 AT4G12400.2 35.780 109 63 2 102 210 2 103 2.65e-13 70.1
Msa1440910 AT4G12400.2 29.661 118 76 2 102 219 369 479 6.85e-11 62.8
Msa1440910 AT5G20360.5 29.775 178 104 7 75 247 8 169 4.84e-13 69.3
Msa1440910 AT5G20360.6 29.775 178 104 7 75 247 8 169 4.84e-13 69.3
Msa1440910 AT5G20360.7 31.373 153 87 5 98 247 62 199 8.39e-13 68.6
Msa1440910 AT5G20360.4 31.373 153 87 5 98 247 62 199 8.39e-13 68.6
Msa1440910 AT3G14950.1 29.032 186 108 6 90 263 484 657 1.06e-12 68.2
Msa1440910 AT5G48570.1 33.562 146 82 3 96 233 404 542 3.95e-12 66.6
Msa1440910 AT3G17970.1 29.577 142 90 2 82 220 451 585 5.93e-12 65.9
Msa1440910 AT5G21990.1 34.821 112 71 1 99 208 100 211 7.00e-12 65.9
Msa1440910 AT3G21640.1 32.099 162 86 6 99 247 176 326 9.81e-12 65.1
Msa1440910 AT1G62740.1 33.028 109 66 2 102 210 2 103 1.80e-11 64.7
Msa1440910 AT1G62740.1 27.338 139 86 2 89 219 361 492 2.51e-11 63.9
Msa1440910 AT5G12430.1 30.693 101 67 1 106 206 883 980 1.89e-11 64.7
Msa1440910 AT1G04190.1 27.778 162 102 6 106 267 19 165 3.38e-11 63.2
Msa1440910 AT1G56440.1 25.943 212 124 6 58 265 50 232 4.02e-11 63.5
Msa1440910 AT1G56440.2 25.943 212 124 6 58 265 40 222 5.24e-11 63.2
Msa1440910 AT2G41520.3 29.012 162 102 4 99 257 729 880 8.62e-11 62.8

Find 75 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGCTTCGAGGTTCTTC+TGG 0.237352 tig0029145:-12965 Msa1440910:intergenic
CCTCATTAACAATCAAGTTT+TGG 0.279865 tig0029145:-17758 Msa1440910:intergenic
TTCACTATGAAAGCTGATAT+TGG 0.304709 tig0029145:+17540 Msa1440910:three_prime_UTR
AGGAACCAGTGTTTGGATCT+TGG 0.328792 tig0029145:-16576 Msa1440910:intergenic
AATTCTGTATTGGGACGCTT+TGG 0.332566 tig0029145:+16526 Msa1440910:CDS
AACATTGTTGGAACGACGTC+AGG 0.356886 tig0029145:+17497 Msa1440910:three_prime_UTR
GTTAACATTGTACGTGGAAT+TGG 0.359005 tig0029145:+17730 Msa1440910:three_prime_UTR
AGTCCATGTGTTACTGATAT+TGG 0.365601 tig0029145:+17632 Msa1440910:three_prime_UTR
GAAGGAGCAAGAGGGAGAAC+AGG 0.368826 tig0029145:+13262 Msa1440910:CDS
AGCGTCGTTGCCGGCGGCAG+TGG 0.379439 tig0029145:-13141 Msa1440910:intergenic
CCAAAACTTGATTGTTAATG+AGG 0.380400 tig0029145:+17758 Msa1440910:three_prime_UTR
GTTTGTGTTATAGGTAATCT+TGG 0.381493 tig0029145:+17442 Msa1440910:intron
GAAAGTGAGTTGAACATTGT+TGG 0.394045 tig0029145:+17485 Msa1440910:three_prime_UTR
GCAAATGAAGCAAAAGTAGA+AGG 0.396741 tig0029145:+14589 Msa1440910:CDS
AGAAATGGGCAATTCTGTAT+TGG 0.397649 tig0029145:+16516 Msa1440910:CDS
ATTCTGTATTGGGACGCTTT+GGG 0.401053 tig0029145:+16527 Msa1440910:CDS
GGTTAACATCAACACGTCTA+TGG 0.402128 tig0029145:+17687 Msa1440910:three_prime_UTR
CAATGAATCGGAATTGAAAC+AGG 0.408117 tig0029145:+13352 Msa1440910:CDS
GAAATGGGCAATTCTGTATT+GGG 0.422321 tig0029145:+16517 Msa1440910:CDS
ATAGAATAGGAACCAGTGTT+TGG 0.423050 tig0029145:-16583 Msa1440910:intergenic
GCCCCTTGCTACTGTAAAAC+GGG 0.430768 tig0029145:+15702 Msa1440910:CDS
TTCGGTGTCAGAGACTTGTT+TGG 0.434377 tig0029145:-13052 Msa1440910:intergenic
GCGTTCCATTGAGATAGAAT+AGG 0.437193 tig0029145:-16596 Msa1440910:intergenic
ACCAAAGCTTTAACATATGC+AGG 0.443256 tig0029145:-15058 Msa1440910:intergenic
ATAATAGTTTGAGACTTCAA+TGG 0.444996 tig0029145:+16700 Msa1440910:three_prime_UTR
TCCTGCATATGTTAAAGCTT+TGG 0.447235 tig0029145:+15057 Msa1440910:CDS
TTTCCCAGCTTGACCATTTG+AGG 0.452146 tig0029145:-15662 Msa1440910:intergenic
CCGGCGGCAGTGGCGTTGGA+TGG 0.453485 tig0029145:-13131 Msa1440910:intergenic
ACCGTCGGAAGCGTCGTTGC+CGG 0.458550 tig0029145:-13150 Msa1440910:intergenic
AGCCCCTTGCTACTGTAAAA+CGG 0.461219 tig0029145:+15701 Msa1440910:CDS
TTAGAAATTGATCCCTCAAA+TGG 0.461242 tig0029145:+15649 Msa1440910:CDS
GAGCGTATTTCCACAGATGA+AGG 0.467315 tig0029145:-14691 Msa1440910:intergenic
GATCCCTCAAATGGTCAAGC+TGG 0.469674 tig0029145:+15658 Msa1440910:CDS
CACTTTCTACTTTATTTACA+CGG 0.478429 tig0029145:-17469 Msa1440910:intergenic
GAATGCTTTGATCAATGAAT+CGG 0.480599 tig0029145:+13340 Msa1440910:CDS
CTACCATCTTCGAGAAGGTT+CGG 0.482686 tig0029145:-13070 Msa1440910:intergenic
GTTGCCGGCGGCAGTGGCGT+TGG 0.483157 tig0029145:-13135 Msa1440910:intergenic
TAAAGAATGCACAAAAGCAT+TGG 0.487615 tig0029145:+15027 Msa1440910:CDS
ATAATTGCACTAAGCAAGAA+AGG 0.488669 tig0029145:+16665 Msa1440910:three_prime_UTR
CCATCCAACGCCACTGCCGC+CGG 0.494207 tig0029145:+13131 Msa1440910:CDS
GGACTGCTTTGAAGTTGTCA+AGG 0.494691 tig0029145:-16555 Msa1440910:intergenic
TTCCCAGCTTGACCATTTGA+GGG 0.500617 tig0029145:-15661 Msa1440910:intergenic
TGGTTCCTATTCTATCTCAA+TGG 0.506189 tig0029145:+16591 Msa1440910:CDS
GTTAAAGCTTTGGTGAGAAG+AGG 0.519249 tig0029145:+15067 Msa1440910:CDS
TTGAAACTACATACAACTTG+TGG 0.535753 tig0029145:+17666 Msa1440910:three_prime_UTR
ACACCGAACCTTCTCGAAGA+TGG 0.536276 tig0029145:+13067 Msa1440910:exon
GCTATCGAGATCAGCTTCGC+TGG 0.539161 tig0029145:-13183 Msa1440910:intergenic
CTCGATAGCGACGGCGATGA+CGG 0.540826 tig0029145:+13197 Msa1440910:CDS
GCCGGCAACGACGCTTCCGA+CGG 0.542143 tig0029145:+13149 Msa1440910:CDS
TGGAATCGCGTTTCGATCGT+CGG 0.546354 tig0029145:-13111 Msa1440910:intergenic
ATCCCTCAAATGGTCAAGCT+GGG 0.548108 tig0029145:+15659 Msa1440910:CDS
AAAATGAAAGAAGAAATGAT+TGG 0.548679 tig0029145:+15727 Msa1440910:CDS
GTCGGAAGCGTCGTTGCCGG+CGG 0.566366 tig0029145:-13147 Msa1440910:intergenic
TCAGAGAAGTGTTTCGTCTG+AGG 0.566568 tig0029145:+13298 Msa1440910:CDS
TGTAGATGGGAAGTATGAGG+AGG 0.584891 tig0029145:+14624 Msa1440910:CDS
AGCACACAGCACGGTTTGCA+TGG 0.588997 tig0029145:-14720 Msa1440910:intergenic
AAGGGGCTCTAGTCGGCGAA+TGG 0.604837 tig0029145:-15686 Msa1440910:intergenic
TGAGCAAACGAAGGAGCAAG+AGG 0.609815 tig0029145:+13253 Msa1440910:CDS
CAGTAGCAAGGGGCTCTAGT+CGG 0.619186 tig0029145:-15693 Msa1440910:intergenic
AGCTTTGGTGAGAAGAGGAG+AGG 0.620909 tig0029145:+15072 Msa1440910:CDS
CATGTGTTACTGATATTGGT+TGG 0.622104 tig0029145:+17636 Msa1440910:three_prime_UTR
ATCGAGATCAGCTTCGCTGG+CGG 0.625355 tig0029145:-13180 Msa1440910:intergenic
ACTAGACATGCCTTCATCTG+TGG 0.627350 tig0029145:+14681 Msa1440910:CDS
CTACATTACTATATTAAAAG+CGG 0.630599 tig0029145:-17611 Msa1440910:intergenic
ACGTGAGTTAACATTGTACG+TGG 0.634133 tig0029145:+17724 Msa1440910:three_prime_UTR
TATCACTACCATCTTCGAGA+AGG 0.639913 tig0029145:-13075 Msa1440910:intergenic
GCTGGCGGTTTCGAAACCGT+CGG 0.641137 tig0029145:-13165 Msa1440910:intergenic
CAACCAATATCAGTAACACA+TGG 0.644045 tig0029145:-17635 Msa1440910:intergenic
GCAGTCCAAGATCCAAACAC+TGG 0.648347 tig0029145:+16571 Msa1440910:CDS
GAGCAAACGAAGGAGCAAGA+GGG 0.650540 tig0029145:+13254 Msa1440910:CDS
GATAGCGACGGCGATGACGG+TGG 0.651321 tig0029145:+13200 Msa1440910:CDS
ACATTGTTGGAACGACGTCA+GGG 0.656560 tig0029145:+17498 Msa1440910:three_prime_UTR
GAAGCTGATCTCGATAGCGA+CGG 0.668142 tig0029145:+13188 Msa1440910:CDS
AGAGATTCTTGAGCAAACGA+AGG 0.691545 tig0029145:+13244 Msa1440910:CDS
TAGTCATTATGAGAAAACAA+AGG 0.716141 tig0029145:+16728 Msa1440910:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATATTTACATCAA+GGG + tig0029145:15222-15241 Msa1440910:intron 10.0%
!! AAAGAAAAAAAAAAAAAAAC+TGG - tig0029145:15597-15616 Msa1440910:intergenic 10.0%
!!! TTTTCTTTTCAAAATATAAT+TGG + tig0029145:15609-15628 Msa1440910:intron 10.0%
!! ATATACAAACAAATATTAAA+AGG - tig0029145:15780-15799 Msa1440910:intergenic 10.0%
!!! TTAAGTTTGGATTAATTTTT+GGG + tig0029145:13585-13604 Msa1440910:intron 15.0%
!! TTAATCGAACAATAAATTTA+AGG - tig0029145:13919-13938 Msa1440910:intergenic 15.0%
!! ATAAATAAATAAATAAGCCT+GGG - tig0029145:14049-14068 Msa1440910:intergenic 15.0%
!! AATAAATAAATAAATAAGCC+TGG - tig0029145:14050-14069 Msa1440910:intergenic 15.0%
!!! TTTATTTATTTTTGCATTGA+AGG + tig0029145:14064-14083 Msa1440910:intron 15.0%
!!! TTATTTATTTTTGCATTGAA+GGG + tig0029145:14065-14084 Msa1440910:intron 15.0%
!! GAAAAATAATATTTACATCA+AGG + tig0029145:15221-15240 Msa1440910:intron 15.0%
!!! ATTTATTATTTTGTCTTTGT+AGG + tig0029145:15798-15817 Msa1440910:intron 15.0%
!! ATGGTATAAAATATAAATGA+AGG - tig0029145:15857-15876 Msa1440910:intergenic 15.0%
!!! TTTGTTTTATGCATATATTT+TGG + tig0029145:16200-16219 Msa1440910:intron 15.0%
!! AAGAAACTTCAAAAAAAAAG+GGG - tig0029145:13419-13438 Msa1440910:intergenic 20.0%
!! GAAGAAACTTCAAAAAAAAA+GGG - tig0029145:13420-13439 Msa1440910:intergenic 20.0%
!! TGAAGAAACTTCAAAAAAAA+AGG - tig0029145:13421-13440 Msa1440910:intergenic 20.0%
!!! TATGTGTTAGTTTTTGTTAA+TGG + tig0029145:13456-13475 Msa1440910:intron 20.0%
!!! GTTAAGTTTGGATTAATTTT+TGG + tig0029145:13584-13603 Msa1440910:intron 20.0%
!!! TAAATTGATTTTGACATGTT+TGG + tig0029145:13620-13639 Msa1440910:intron 20.0%
!! TATACTAGATTATAACAAGA+GGG - tig0029145:14302-14321 Msa1440910:intergenic 20.0%
!! AAGTTGTAAATAACATAGTA+AGG + tig0029145:15394-15413 Msa1440910:intron 20.0%
!! AGTTGTAAATAACATAGTAA+GGG + tig0029145:15395-15414 Msa1440910:intron 20.0%
!! AAAATGAAAGAAGAAATGAT+TGG + tig0029145:15727-15746 Msa1440910:CDS 20.0%
!! GAACTATATGAGAAATTATT+AGG + tig0029145:16030-16049 Msa1440910:intron 20.0%
!!! ATTACCTACCATTTAATTTT+TGG + tig0029145:16338-16357 Msa1440910:intron 20.0%
!!! AAGCAAAATTTTATCTTAGA+CGG + tig0029145:16393-16412 Msa1440910:intron 20.0%
!! CTTCAAATTTGTATCTATTA+TGG + tig0029145:17188-17207 Msa1440910:intron 20.0%
!! TTAAGCAAAGGTTTAATAAA+GGG - tig0029145:17239-17258 Msa1440910:intergenic 20.0%
!!! ACAAGTTTTGCTTTTTTTAA+GGG - tig0029145:17279-17298 Msa1440910:intergenic 20.0%
!!! AACAAGTTTTGCTTTTTTTA+AGG - tig0029145:17280-17299 Msa1440910:intergenic 20.0%
!! TTGAATAGATGAAAAATTGA+GGG - tig0029145:17319-17338 Msa1440910:intergenic 20.0%
!! TTTGAATAGATGAAAAATTG+AGG - tig0029145:17320-17339 Msa1440910:intergenic 20.0%
!! CTACATTACTATATTAAAAG+CGG - tig0029145:17614-17633 Msa1440910:intergenic 20.0%
! TATAAACGAAACCCTAAATT+TGG - tig0029145:13386-13405 Msa1440910:intergenic 25.0%
! CAATACATGAAGAAAATTTC+TGG + tig0029145:13551-13570 Msa1440910:intron 25.0%
!!! AAGAGTTTTTTTCGAATAGA+AGG + tig0029145:14208-14227 Msa1440910:intron 25.0%
!!! AGAGTTTTTTTCGAATAGAA+GGG + tig0029145:14209-14228 Msa1440910:intron 25.0%
! CTATACTAGATTATAACAAG+AGG - tig0029145:14303-14322 Msa1440910:intergenic 25.0%
!! CTCTTGTTATAATCTAGTAT+AGG + tig0029145:14301-14320 Msa1440910:intron 25.0%
! TCAAATCCAAAATCAGAAAA+AGG - tig0029145:14495-14514 Msa1440910:intergenic 25.0%
!! GTAACAAACTTTTTGTAGAT+GGG + tig0029145:14611-14630 Msa1440910:CDS 25.0%
! AATTACAGTATAAACGAAGA+AGG - tig0029145:14763-14782 Msa1440910:intergenic 25.0%
! CAACAATAAGCATAACATAA+GGG - tig0029145:14932-14951 Msa1440910:intergenic 25.0%
! ACAACAATAAGCATAACATA+AGG - tig0029145:14933-14952 Msa1440910:intergenic 25.0%
!!! TATTTTAAGCTTGAACTTAC+CGG - tig0029145:15134-15153 Msa1440910:intergenic 25.0%
! GTAAGTTCAAGCTTAAAATA+AGG + tig0029145:15134-15153 Msa1440910:intron 25.0%
! ATAGGAACCTTATATAAGTA+GGG - tig0029145:15303-15322 Msa1440910:intergenic 25.0%
! AATAGGAACCTTATATAAGT+AGG - tig0029145:15304-15323 Msa1440910:intergenic 25.0%
!! ATGTTATTTACAACTTGCTT+GGG - tig0029145:15390-15409 Msa1440910:intergenic 25.0%
!! TATGTTATTTACAACTTGCT+TGG - tig0029145:15391-15410 Msa1440910:intergenic 25.0%
!! TTTGATTTCTCAAACAAGAA+GGG + tig0029145:15421-15440 Msa1440910:intron 25.0%
!!! ATTATTTTGTCTTTGTAGGA+TGG + tig0029145:15802-15821 Msa1440910:intron 25.0%
! AATCAGGAATATACTCAATT+GGG - tig0029145:15900-15919 Msa1440910:intergenic 25.0%
! TAATCAGGAATATACTCAAT+TGG - tig0029145:15901-15920 Msa1440910:intergenic 25.0%
! ATTTCTCATATAGTTCTTCT+AGG - tig0029145:16026-16045 Msa1440910:intergenic 25.0%
!! TGCATAAAACAAACATTTTC+AGG - tig0029145:16193-16212 Msa1440910:intergenic 25.0%
!!! TTTTGAAACGTAAACATCAT+AGG + tig0029145:16313-16332 Msa1440910:intron 25.0%
! TATAACAGAATGTCATATGT+AGG - tig0029145:16370-16389 Msa1440910:intergenic 25.0%
! TAAATAGACAAACTTGGTTA+CGG - tig0029145:16427-16446 Msa1440910:intergenic 25.0%
! ATGAAGTAAATAGACAAACT+TGG - tig0029145:16433-16452 Msa1440910:intergenic 25.0%
! TGCAGAAAAATTGAAAGAAA+TGG + tig0029145:16501-16520 Msa1440910:intron 25.0%
! GCAGAAAAATTGAAAGAAAT+GGG + tig0029145:16502-16521 Msa1440910:intron 25.0%
!! ATAATAGTTTGAGACTTCAA+TGG + tig0029145:16700-16719 Msa1440910:three_prime_UTR 25.0%
! TAGTCATTATGAGAAAACAA+AGG + tig0029145:16728-16747 Msa1440910:three_prime_UTR 25.0%
! GTTAAGCAAAGGTTTAATAA+AGG - tig0029145:17240-17259 Msa1440910:intergenic 25.0%
!!! AACGATTTTTAGTTAAGCAA+AGG - tig0029145:17251-17270 Msa1440910:intergenic 25.0%
!! CACTTTCTACTTTATTTACA+CGG - tig0029145:17472-17491 Msa1440910:intergenic 25.0%
!!! TTAACGTTTTGAATTGTACT+TGG + tig0029145:17568-17587 Msa1440910:three_prime_UTR 25.0%
!! ATTTTTGTTTCGTGTGTTTG+AGG - tig0029145:12992-13011 Msa0216280:intergenic 30.0%
!!! CAAGAATCTCTTGTTTTTCT+CGG - tig0029145:13235-13254 Msa1440910:intergenic 30.0%
GAATGCTTTGATCAATGAAT+CGG + tig0029145:13340-13359 Msa1440910:CDS 30.0%
AGGTTCGATTTCCAAATTTA+GGG + tig0029145:13372-13391 Msa1440910:intron 30.0%
!!! AAAGCAGAAGAGTTTTGTTT+AGG + tig0029145:13996-14015 Msa1440910:intron 30.0%
!!! TCTTTTCTGATAGTTCTAGT+TGG + tig0029145:14166-14185 Msa1440910:intron 30.0%
! ATAGAAGGGTTTTCTATTCA+TGG + tig0029145:14223-14242 Msa1440910:intron 30.0%
TTTCTATTCATGGCTTAAGT+TGG + tig0029145:14233-14252 Msa1440910:intron 30.0%
TAATCTAGTATAGGTGTGTT+TGG + tig0029145:14310-14329 Msa1440910:intron 30.0%
AATCTAGTATAGGTGTGTTT+GGG + tig0029145:14311-14330 Msa1440910:intron 30.0%
ATTATCATTACTCTAGCTAG+CGG - tig0029145:14405-14424 Msa1440910:intergenic 30.0%
! GGTAACAAACTTTTTGTAGA+TGG + tig0029145:14610-14629 Msa1440910:CDS 30.0%
ACATATGTCAAATATACCTC+AGG + tig0029145:14985-15004 Msa1440910:intron 30.0%
CATATGTCAAATATACCTCA+GGG + tig0029145:14986-15005 Msa1440910:intron 30.0%
! GTATTTTCATATTTTCCCTG+AGG - tig0029145:15004-15023 Msa1440910:intergenic 30.0%
! TAAAGAATGCACAAAAGCAT+TGG + tig0029145:15027-15046 Msa1440910:CDS 30.0%
!! AAAGCTTGAACATTTTGAAG+AGG + tig0029145:15102-15121 Msa1440910:CDS 30.0%
TTCAAGCTTAAAATAAGGCA+AGG + tig0029145:15139-15158 Msa1440910:intron 30.0%
TAATATTTACATCAAGGGTG+TGG + tig0029145:15227-15246 Msa1440910:intron 30.0%
! TGTTATTTACAACTTGCTTG+GGG - tig0029145:15389-15408 Msa1440910:intergenic 30.0%
TGTAAATAACATAGTAAGGG+AGG + tig0029145:15398-15417 Msa1440910:intron 30.0%
! GTTTGATTTCTCAAACAAGA+AGG + tig0029145:15420-15439 Msa1440910:intron 30.0%
TTAGAAATTGATCCCTCAAA+TGG + tig0029145:15649-15668 Msa1440910:CDS 30.0%
!!! AGTCATTTTTGTCTTTCTCT+TGG + tig0029145:15752-15771 Msa1440910:intron 30.0%
GGAAATTAGGAATACTCTAA+TGG - tig0029145:15876-15895 Msa1440910:intergenic 30.0%
ATCAGGAATATACTCAATTG+GGG - tig0029145:15899-15918 Msa1440910:intergenic 30.0%
TATGTGTGAGATAGAACATT+AGG + tig0029145:15972-15991 Msa1440910:intron 30.0%
ATTAGGAAATGCTTCTTGTT+AGG + tig0029145:15989-16008 Msa1440910:intron 30.0%
TTAGGAAATGCTTCTTGTTA+GGG + tig0029145:15990-16009 Msa1440910:intron 30.0%
AGGAAAATGTTAGATGTCAA+TGG + tig0029145:16050-16069 Msa1440910:intron 30.0%
TGACGTATAATCGAACATTA+TGG + tig0029145:16087-16106 Msa1440910:intron 30.0%
! AAACCAAGTCTTATACTACT+AGG - tig0029145:16141-16160 Msa1440910:intergenic 30.0%
ATGGCCAAAAATTAAATGGT+AGG - tig0029145:16345-16364 Msa1440910:intergenic 30.0%
ATAATTGCACTAAGCAAGAA+AGG + tig0029145:16665-16684 Msa1440910:three_prime_UTR 30.0%
!! TTTTGTGATTGATTCCATGA+AGG + tig0029145:16776-16795 Msa1440910:intron 30.0%
GAATTATTCAATCTCCTTCA+TGG - tig0029145:16793-16812 Msa1440910:intergenic 30.0%
AAAGCACATTAACTGTAAGA+AGG - tig0029145:16815-16834 Msa1440910:intergenic 30.0%
CTTACAGTTAATGTGCTTTA+AGG + tig0029145:16816-16835 Msa1440910:intron 30.0%
GTCTTCTCAACACTATTATT+TGG + tig0029145:16928-16947 Msa1440910:intron 30.0%
! TTTTCAACACTTTCCCATTT+TGG - tig0029145:17008-17027 Msa1440910:intergenic 30.0%
! GTATTTTATGATGTTCCTTG+TGG + tig0029145:17040-17059 Msa1440910:intron 30.0%
AATTAACTGTTCCTTCATGA+AGG + tig0029145:17077-17096 Msa1440910:intron 30.0%
ATTAACTGTTCCTTCATGAA+GGG + tig0029145:17078-17097 Msa1440910:intron 30.0%
GTTTGTGTTATAGGTAATCT+TGG + tig0029145:17442-17461 Msa1440910:intron 30.0%
TTCACTATGAAAGCTGATAT+TGG + tig0029145:17540-17559 Msa1440910:three_prime_UTR 30.0%
TTGAAACTACATACAACTTG+TGG + tig0029145:17666-17685 Msa1440910:three_prime_UTR 30.0%
! CCTCATTAACAATCAAGTTT+TGG - tig0029145:17761-17780 Msa1440910:intergenic 30.0%
CAATGAATCGGAATTGAAAC+AGG + tig0029145:13352-13371 Msa1440910:CDS 35.0%
CAGGTTCGATTTCCAAATTT+AGG + tig0029145:13371-13390 Msa1440910:intron 35.0%
GGTTTAGTGAGTGTTAAGTT+TGG + tig0029145:13572-13591 Msa1440910:intron 35.0%
AATGAAGTCTAGCACAAACA+CGG - tig0029145:13820-13839 Msa1440910:intergenic 35.0%
AGGCAAAAATTCACGTTTCA+AGG - tig0029145:13899-13918 Msa1440910:intergenic 35.0%
TATTGACCTTGCTTCAACTA+GGG - tig0029145:14025-14044 Msa1440910:intergenic 35.0%
TTATTGACCTTGCTTCAACT+AGG - tig0029145:14026-14045 Msa1440910:intergenic 35.0%
!! TTTCTGATAGTTCTAGTTGG+TGG + tig0029145:14169-14188 Msa1440910:intron 35.0%
!! TTCTGATAGTTCTAGTTGGT+GGG + tig0029145:14170-14189 Msa1440910:intron 35.0%
!! TATTCATGGCTTAAGTTGGA+GGG + tig0029145:14237-14256 Msa1440910:intron 35.0%
TAATCTCTCTCTCTCTATAG+TGG + tig0029145:14421-14440 Msa1440910:intron 35.0%
AGCTTGTGCAACTAGTAATT+TGG + tig0029145:14466-14485 Msa1440910:intron 35.0%
! TGGTAGCCTTTTTCTGATTT+TGG + tig0029145:14486-14505 Msa1440910:intron 35.0%
GCAAATGAAGCAAAAGTAGA+AGG + tig0029145:14589-14608 Msa1440910:CDS 35.0%
!! TTTTGTAGATGGGAAGTATG+AGG + tig0029145:14621-14640 Msa1440910:CDS 35.0%
!!! TGTGCTTTTTGAAACTGGTA+TGG + tig0029145:14737-14756 Msa1440910:intron 35.0%
TATGCGGTAAAGCAAAATAC+AGG - tig0029145:14809-14828 Msa1440910:intergenic 35.0%
GTTCAACTAGTTGACATATG+CGG - tig0029145:14825-14844 Msa1440910:intergenic 35.0%
TCCTGCATATGTTAAAGCTT+TGG + tig0029145:15057-15076 Msa1440910:CDS 35.0%
! ACCAAAGCTTTAACATATGC+AGG - tig0029145:15061-15080 Msa1440910:intergenic 35.0%
GTACCTTCCCTACTTATATA+AGG + tig0029145:15293-15312 Msa1440910:intron 35.0%
GAACCTTATATAAGTAGGGA+AGG - tig0029145:15299-15318 Msa1440910:intergenic 35.0%
GTCTTGAAGGGAAATAGAAT+AGG - tig0029145:15321-15340 Msa1440910:intergenic 35.0%
! CTCCAGTTATCTGTTTGTTT+TGG + tig0029145:15464-15483 Msa1440910:intron 35.0%
AGCCAAAACAAACAGATAAC+TGG - tig0029145:15469-15488 Msa1440910:intergenic 35.0%
TGGTGAAACGAAAAGATATG+GGG - tig0029145:15577-15596 Msa1440910:intergenic 35.0%
CTGGTGAAACGAAAAGATAT+GGG - tig0029145:15578-15597 Msa1440910:intergenic 35.0%
ACTGGTGAAACGAAAAGATA+TGG - tig0029145:15579-15598 Msa1440910:intergenic 35.0%
TCAGGAATATACTCAATTGG+GGG - tig0029145:15898-15917 Msa1440910:intergenic 35.0%
TTGAGGACAAGTCAATAATC+AGG - tig0029145:15916-15935 Msa1440910:intergenic 35.0%
!! ATTATTGACTTGTCCTCAAG+TGG + tig0029145:15917-15936 Msa1440910:intron 35.0%
TAGGAAATGCTTCTTGTTAG+GGG + tig0029145:15991-16010 Msa1440910:intron 35.0%
ATCGAACATTATGGTATCGT+CGG + tig0029145:16096-16115 Msa1440910:intron 35.0%
! AAGTCTTATACTACTAGGTG+GGG - tig0029145:16136-16155 Msa1440910:intergenic 35.0%
! CAAGTCTTATACTACTAGGT+GGG - tig0029145:16137-16156 Msa1440910:intergenic 35.0%
! TCCTTGCACATGTAATTTGT+TGG + tig0029145:16230-16249 Msa1440910:intron 35.0%
! TGACTTTTCTTAGTTGCACT+TGG + tig0029145:16260-16279 Msa1440910:intron 35.0%
! GACTTTTCTTAGTTGCACTT+GGG + tig0029145:16261-16280 Msa1440910:intron 35.0%
GGCAATGGCCAAAAATTAAA+TGG - tig0029145:16349-16368 Msa1440910:intergenic 35.0%
AGAATGTCATATGTAGGCAA+TGG - tig0029145:16364-16383 Msa1440910:intergenic 35.0%
TCATCTGTCAAAGCAAATGA+TGG - tig0029145:16470-16489 Msa1440910:intergenic 35.0%
AGAAATGGGCAATTCTGTAT+TGG + tig0029145:16516-16535 Msa1440910:CDS 35.0%
GAAATGGGCAATTCTGTATT+GGG + tig0029145:16517-16536 Msa1440910:CDS 35.0%
ATAGAATAGGAACCAGTGTT+TGG - tig0029145:16586-16605 Msa1440910:intergenic 35.0%
TGGTTCCTATTCTATCTCAA+TGG + tig0029145:16591-16610 Msa1440910:CDS 35.0%
! CATTGTTATTGAGACATGCA+AGG + tig0029145:16889-16908 Msa1440910:intron 35.0%
TCATCTAATGGGACCAAAAT+GGG + tig0029145:16992-17011 Msa1440910:intron 35.0%
TCTATTATGGCACACAAGTT+AGG + tig0029145:17201-17220 Msa1440910:intron 35.0%
AATTGAGGGAAAGACAAATG+AGG - tig0029145:17305-17324 Msa1440910:intergenic 35.0%
CGTCACTGCTTGTAAAATAT+TGG + tig0029145:17399-17418 Msa1440910:intron 35.0%
! TGTCATGTGGTTTGTGTTAT+AGG + tig0029145:17433-17452 Msa1440910:intron 35.0%
! GAAAGTGAGTTGAACATTGT+TGG + tig0029145:17485-17504 Msa1440910:three_prime_UTR 35.0%
! AGTCCATGTGTTACTGATAT+TGG + tig0029145:17632-17651 Msa1440910:three_prime_UTR 35.0%
CAACCAATATCAGTAACACA+TGG - tig0029145:17638-17657 Msa1440910:intergenic 35.0%
! CATGTGTTACTGATATTGGT+TGG + tig0029145:17636-17655 Msa1440910:three_prime_UTR 35.0%
GTTAACATTGTACGTGGAAT+TGG + tig0029145:17730-17749 Msa1440910:three_prime_UTR 35.0%
TTTAAGCTTCGAGGTTCTTC+TGG - tig0029145:12968-12987 Msa0216280:intergenic 40.0%
!!! GTTTGAGGTTTTAAGCTTCG+AGG - tig0029145:12977-12996 Msa0216280:intergenic 40.0%
TATCACTACCATCTTCGAGA+AGG - tig0029145:13078-13097 Msa1440910:intergenic 40.0%
AGAGATTCTTGAGCAAACGA+AGG + tig0029145:13244-13263 Msa1440910:CDS 40.0%
!!! TGTAGCACTGACACTTTTGA+TGG + tig0029145:13667-13686 Msa1440910:intron 40.0%
! CTTTTGATGGAATGCATGTC+CGG + tig0029145:13680-13699 Msa1440910:intron 40.0%
CGATGTGTTAGTGTTGTGTT+TGG + tig0029145:13791-13810 Msa1440910:intron 40.0%
!! CTATTCATGGCTTAAGTTGG+AGG + tig0029145:14236-14255 Msa1440910:intron 40.0%
! ATGCTCATTGCATTTTGAGC+TGG + tig0029145:14260-14279 Msa1440910:intron 40.0%
TAGTATAGGTGTGTTTGGGT+GGG + tig0029145:14315-14334 Msa1440910:intron 40.0%
! GTTTCAAAAAGCACACAGCA+CGG - tig0029145:14732-14751 Msa1440910:intergenic 40.0%
!!! TGCTGTGTGCTTTTTGAAAC+TGG + tig0029145:14732-14751 Msa1440910:CDS 40.0%
ATTCCAGATTAAGCTGCTAC+AGG + tig0029145:14887-14906 Msa1440910:intron 40.0%
! GTTAAAGCTTTGGTGAGAAG+AGG + tig0029145:15067-15086 Msa1440910:CDS 40.0%
!! CATTTTGAAGAGGCAATTGC+CGG + tig0029145:15112-15131 Msa1440910:CDS 40.0%
AGTGCAAACTTCAGATGAGT+TGG - tig0029145:15175-15194 Msa1440910:intergenic 40.0%
! TTTACAACTTGCTTGGGGTT+GGG - tig0029145:15384-15403 Msa1440910:intergenic 40.0%
! ATTTACAACTTGCTTGGGGT+TGG - tig0029145:15385-15404 Msa1440910:intergenic 40.0%
! TTCCCGTTTTACAGTAGCAA+GGG - tig0029145:15707-15726 Msa1440910:intergenic 40.0%
! TTTCCCGTTTTACAGTAGCA+AGG - tig0029145:15708-15727 Msa1440910:intergenic 40.0%
TACTCAATTGGGGGGAAATT+AGG - tig0029145:15889-15908 Msa1440910:intergenic 40.0%
CAGGAATATACTCAATTGGG+GGG - tig0029145:15897-15916 Msa1440910:intergenic 40.0%
TATGTACTCTGAACCACTTG+AGG - tig0029145:15933-15952 Msa1440910:intergenic 40.0%
! CCAAGTCTTATACTACTAGG+TGG - tig0029145:16138-16157 Msa1440910:intergenic 40.0%
CCACCTAGTAGTATAAGACT+TGG + tig0029145:16135-16154 Msa1440910:intron 40.0%
GCCAACAAATTACATGTGCA+AGG - tig0029145:16234-16253 Msa1440910:intergenic 40.0%
!! GCACATGTAATTTGTTGGCT+AGG + tig0029145:16235-16254 Msa1440910:intron 40.0%
AATTCTGTATTGGGACGCTT+TGG + tig0029145:16526-16545 Msa1440910:CDS 40.0%
ATTCTGTATTGGGACGCTTT+GGG + tig0029145:16527-16546 Msa1440910:CDS 40.0%
GCGTTCCATTGAGATAGAAT+AGG - tig0029145:16599-16618 Msa1440910:intergenic 40.0%
GACCACTCTATTAGTGAGAA+TGG - tig0029145:16967-16986 Msa1440910:intergenic 40.0%
GTCATCTAATGGGACCAAAA+TGG + tig0029145:16991-17010 Msa1440910:intron 40.0%
ATGATGTTCCTTGTGGCTTA+AGG + tig0029145:17047-17066 Msa1440910:intron 40.0%
ATTATGGCACACAAGTTAGG+TGG + tig0029145:17204-17223 Msa1440910:intron 40.0%
GGATCTAATTCACTGTCATG+TGG + tig0029145:17420-17439 Msa1440910:intron 40.0%
GGTTAACATCAACACGTCTA+TGG + tig0029145:17687-17706 Msa1440910:three_prime_UTR 40.0%
ACGTGAGTTAACATTGTACG+TGG + tig0029145:17724-17743 Msa1440910:three_prime_UTR 40.0%
!! TTCGGTGTCAGAGACTTGTT+TGG - tig0029145:13055-13074 Msa0216280:intergenic 45.0%
CTACCATCTTCGAGAAGGTT+CGG - tig0029145:13073-13092 Msa1440910:intergenic 45.0%
!! TCAGAGAAGTGTTTCGTCTG+AGG + tig0029145:13298-13317 Msa1440910:CDS 45.0%
TGAAGCAAGGTCAATAACCC+AGG + tig0029145:14029-14048 Msa1440910:intron 45.0%
CTAGTATAGGTGTGTTTGGG+TGG + tig0029145:14314-14333 Msa1440910:intron 45.0%
! TGTAGATGGGAAGTATGAGG+AGG + tig0029145:14624-14643 Msa1440910:CDS 45.0%
ACTAGACATGCCTTCATCTG+TGG + tig0029145:14681-14700 Msa1440910:CDS 45.0%
GAGCGTATTTCCACAGATGA+AGG - tig0029145:14694-14713 Msa1440910:intergenic 45.0%
AGACCTGTAGCAGCTTAATC+TGG - tig0029145:14893-14912 Msa1440910:intergenic 45.0%
TTATGCCTGACACTCTTCCT+TGG + tig0029145:15256-15275 Msa1440910:intron 45.0%
TACATGCGATTCCTCAACCA+AGG - tig0029145:15276-15295 Msa1440910:intergenic 45.0%
AGATCTCGTAGCCATGCTAT+CGG - tig0029145:15343-15362 Msa1440910:intergenic 45.0%
! TTACAACTTGCTTGGGGTTG+GGG - tig0029145:15383-15402 Msa1440910:intergenic 45.0%
! TCTCAAACAAGAAGGGTGTG+TGG + tig0029145:15428-15447 Msa1440910:intron 45.0%
ATCCCTCAAATGGTCAAGCT+GGG + tig0029145:15659-15678 Msa1440910:CDS 45.0%
TTCCCAGCTTGACCATTTGA+GGG - tig0029145:15664-15683 Msa1440910:intergenic 45.0%
TTTCCCAGCTTGACCATTTG+AGG - tig0029145:15665-15684 Msa1440910:intergenic 45.0%
AGCCCCTTGCTACTGTAAAA+CGG + tig0029145:15701-15720 Msa1440910:CDS 45.0%
! TCCCGTTTTACAGTAGCAAG+GGG - tig0029145:15706-15725 Msa1440910:intergenic 45.0%
!! GGACTGCTTTGAAGTTGTCA+AGG - tig0029145:16558-16577 Msa1440910:intergenic 45.0%
AGGAACCAGTGTTTGGATCT+TGG - tig0029145:16579-16598 Msa1440910:intergenic 45.0%
CTCTATTAGTGAGAATGGCG+TGG - tig0029145:16962-16981 Msa1440910:intergenic 45.0%
CGCCATTCTCACTAATAGAG+TGG + tig0029145:16962-16981 Msa1440910:intron 45.0%
CTCACTAATAGAGTGGTCTC+AGG + tig0029145:16969-16988 Msa1440910:intron 45.0%
AGTGGTCTCAGGTCATCTAA+TGG + tig0029145:16980-16999 Msa1440910:intron 45.0%
GTGGTCTCAGGTCATCTAAT+GGG + tig0029145:16981-17000 Msa1440910:intron 45.0%
TTAGAGAGCCTTAAGCCACA+AGG - tig0029145:17058-17077 Msa1440910:intergenic 45.0%
TACAAGCAGTGACGTGAAGT+AGG - tig0029145:17393-17412 Msa1440910:intergenic 45.0%
AACATTGTTGGAACGACGTC+AGG + tig0029145:17497-17516 Msa1440910:three_prime_UTR 45.0%
ACATTGTTGGAACGACGTCA+GGG + tig0029145:17498-17517 Msa1440910:three_prime_UTR 45.0%
ACACCGAACCTTCTCGAAGA+TGG + tig0029145:13067-13086 Msa1440910:exon 50.0%
TGGAATCGCGTTTCGATCGT+CGG - tig0029145:13114-13133 Msa1440910:intergenic 50.0%
GAAGCTGATCTCGATAGCGA+CGG + tig0029145:13188-13207 Msa1440910:CDS 50.0%
TGAGCAAACGAAGGAGCAAG+AGG + tig0029145:13253-13272 Msa1440910:CDS 50.0%
GAGCAAACGAAGGAGCAAGA+GGG + tig0029145:13254-13273 Msa1440910:CDS 50.0%
! GTCGTGTCAGTGTTGAACAC+CGG - tig0029145:13702-13721 Msa1440910:intergenic 50.0%
AGGTAGCCCTAGTTGAAGCA+AGG + tig0029145:14016-14035 Msa1440910:intron 50.0%
! AGCTTTGGTGAGAAGAGGAG+AGG + tig0029145:15072-15091 Msa1440910:CDS 50.0%
!! CTCAACCAAGGAAGAGTGTC+AGG - tig0029145:15264-15283 Msa1440910:intergenic 50.0%
CTGACACTCTTCCTTGGTTG+AGG + tig0029145:15262-15281 Msa1440910:intron 50.0%
TCCCTTCAAGACCGATAGCA+TGG + tig0029145:15329-15348 Msa1440910:intron 50.0%
GCCATGCTATCGGTCTTGAA+GGG - tig0029145:15333-15352 Msa1440910:intergenic 50.0%
AGCCATGCTATCGGTCTTGA+AGG - tig0029145:15334-15353 Msa1440910:intergenic 50.0%
GATCCCTCAAATGGTCAAGC+TGG + tig0029145:15658-15677 Msa1440910:CDS 50.0%
GCCCCTTGCTACTGTAAAAC+GGG + tig0029145:15702-15721 Msa1440910:CDS 50.0%
GTCTTTGTAGGATGGTGCGT+TGG + tig0029145:15810-15829 Msa1440910:intron 50.0%
GCAGTCCAAGATCCAAACAC+TGG + tig0029145:16571-16590 Msa1440910:CDS 50.0%
AACAAGCGCACCCTTCATGA+AGG - tig0029145:17091-17110 Msa1440910:intergenic 50.0%
AAGTAGGCTCACTCAGCACA+TGG - tig0029145:17377-17396 Msa1440910:intergenic 50.0%
ATCGAGATCAGCTTCGCTGG+CGG - tig0029145:13183-13202 Msa1440910:intergenic 55.0%
GCTATCGAGATCAGCTTCGC+TGG - tig0029145:13186-13205 Msa1440910:intergenic 55.0%
GAAGGAGCAAGAGGGAGAAC+AGG + tig0029145:13262-13281 Msa1440910:CDS 55.0%
AGCACACAGCACGGTTTGCA+TGG - tig0029145:14723-14742 Msa1440910:intergenic 55.0%
GGTTGGGGTCTGTCTGAGTA+AGG - tig0029145:15368-15387 Msa1440910:intergenic 55.0%
! CAGTAGCAAGGGGCTCTAGT+CGG - tig0029145:15696-15715 Msa1440910:intergenic 55.0%
GCTGGCGGTTTCGAAACCGT+CGG - tig0029145:13168-13187 Msa1440910:intergenic 60.0%
CTCGATAGCGACGGCGATGA+CGG + tig0029145:13197-13216 Msa1440910:CDS 60.0%
! AAGGGGCTCTAGTCGGCGAA+TGG - tig0029145:15689-15708 Msa1440910:intergenic 60.0%
!! ACCGTCGGAAGCGTCGTTGC+CGG - tig0029145:13153-13172 Msa1440910:intergenic 65.0%
! GATAGCGACGGCGATGACGG+TGG + tig0029145:13200-13219 Msa1440910:CDS 65.0%
CCATCCAACGCCACTGCCGC+CGG + tig0029145:13131-13150 Msa1440910:CDS 70.0%
!! GTCGGAAGCGTCGTTGCCGG+CGG - tig0029145:13150-13169 Msa1440910:intergenic 70.0%
GCCGGCAACGACGCTTCCGA+CGG + tig0029145:13149-13168 Msa1440910:CDS 70.0%
! CCGGCGGCAGTGGCGTTGGA+TGG - tig0029145:13134-13153 Msa1440910:intergenic 75.0%
GTTGCCGGCGGCAGTGGCGT+TGG - tig0029145:13138-13157 Msa1440910:intergenic 75.0%
AGCGTCGTTGCCGGCGGCAG+TGG - tig0029145:13144-13163 Msa1440910:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0029145 gene 12948 17780 12948 ID=Msa1440910;Name=Msa1440910
tig0029145 mRNA 12948 17780 12948 ID=Msa1440910-mRNA-1;Parent=Msa1440910;Name=Msa1440910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=138|1|1|1|0.8|0.66|6|454|274
tig0029145 exon 12948 13373 12948 ID=Msa1440910-mRNA-1:exon:12511;Parent=Msa1440910-mRNA-1
tig0029145 exon 14574 14753 14574 ID=Msa1440910-mRNA-1:exon:12512;Parent=Msa1440910-mRNA-1
tig0029145 exon 15007 15133 15007 ID=Msa1440910-mRNA-1:exon:12513;Parent=Msa1440910-mRNA-1
tig0029145 exon 15635 15748 15635 ID=Msa1440910-mRNA-1:exon:12514;Parent=Msa1440910-mRNA-1
tig0029145 exon 16506 16749 16506 ID=Msa1440910-mRNA-1:exon:12515;Parent=Msa1440910-mRNA-1
tig0029145 exon 17455 17780 17455 ID=Msa1440910-mRNA-1:exon:12516;Parent=Msa1440910-mRNA-1
tig0029145 five_prime_UTR 12948 13085 12948 ID=Msa1440910-mRNA-1:five_prime_utr;Parent=Msa1440910-mRNA-1
tig0029145 CDS 13086 13373 13086 ID=Msa1440910-mRNA-1:cds;Parent=Msa1440910-mRNA-1
tig0029145 CDS 14574 14753 14574 ID=Msa1440910-mRNA-1:cds;Parent=Msa1440910-mRNA-1
tig0029145 CDS 15007 15133 15007 ID=Msa1440910-mRNA-1:cds;Parent=Msa1440910-mRNA-1
tig0029145 CDS 15635 15748 15635 ID=Msa1440910-mRNA-1:cds;Parent=Msa1440910-mRNA-1
tig0029145 CDS 16506 16621 16506 ID=Msa1440910-mRNA-1:cds;Parent=Msa1440910-mRNA-1
tig0029145 three_prime_UTR 16622 16749 16622 ID=Msa1440910-mRNA-1:three_prime_utr;Parent=Msa1440910-mRNA-1
tig0029145 three_prime_UTR 17455 17780 17455 ID=Msa1440910-mRNA-1:three_prime_utr;Parent=Msa1440910-mRNA-1
Gene Sequence

>Msa1440910

ATGGTAGTGATAGAGCAAGAGAACACCGACGATCGAAACGCGATTCCATCCAACGCCACTGCCGCCGGCAACGACGCTTCCGACGGTTTCGAAACCGCCAGCGAAGCTGATCTCGATAGCGACGGCGATGACGGTGGAGATATCAGCCGAGAAAAACAAGAGATTCTTGAGCAAACGAAGGAGCAAGAGGGAGAACAGGAACAAGATGTTGCTCAGAGAAGTGTTTCGTCTGAGGATGCTTTGATCAATGAAGAGAATGCTTTGATCAATGAATCGGAATTGAAACAGAAAGCATTGAGTGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCTTTATCGCAATATCAACATGCTTTACAAGTTGCACTAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTGAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCCGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGGTCAAGCTGGGAAATCCATTCGCCGACTAGAGCCCCTTGCTACTGTAAAACGGGAAAAAATGAAAGAAGAAATGATTGAAAAATTGAAAGAAATGGGCAATTCTGTATTGGGACGCTTTGGGATGAGCCTTGACAACTTCAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA

Protein sequence

>Msa1440910

MVVIEQENTDDRNAIPSNATAAGNDASDGFETASEADLDSDGDDGGDISREKQEILEQTKEQEGEQEQDVAQRSVSSEDALINEENALINESELKQKALSEANEAKVEGNKLFVDGKYEEALSQYQHALQVALDMPSSVEIRSICHANRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNGQAGKSIRRLEPLATVKREKMKEEMIEKLKEMGNSVLGRFGMSLDNFKAVQDPNTGSYSISMER*