AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021540 MtrunA17_Chr7g0237741 91.971 274 15 1 1 274 1 267 5.51e-170 470
Msa1021540 MtrunA17_Chr2g0323971 72.085 283 57 5 1 274 1 270 5.48e-135 382
Msa1021540 MtrunA17_Chr4g0075481 37.097 124 73 2 99 220 36 156 7.11e-19 86.3
Msa1021540 MtrunA17_Chr4g0027201 40.000 120 64 2 99 210 399 518 2.08e-17 82.0
Msa1021540 MtrunA17_Chr2g0316221 35.252 139 79 4 105 243 465 592 6.94e-17 80.5
Msa1021540 MtrunA17_Chr8g0339141 33.171 205 120 4 23 210 314 518 5.35e-16 77.8
Msa1021540 MtrunA17_Chr2g0311461 35.849 106 63 2 106 210 5 106 1.68e-15 74.7
Msa1021540 MtrunA17_Chr8g0377771 37.956 137 71 3 87 210 379 514 5.29e-15 74.7
Msa1021540 MtrunA17_Chr8g0393041 32.075 159 85 3 66 223 457 593 1.11e-14 73.6
Msa1021540 MtrunA17_Chr2g0304261 35.043 117 71 2 99 213 37 150 1.43e-14 73.6
Msa1021540 MtrunA17_Chr1g0149561 35.652 115 68 3 102 213 40 151 4.32e-14 72.0
Msa1021540 MtrunA17_Chr3g0124261 30.464 151 93 3 80 230 437 575 7.92e-14 71.2
Msa1021540 MtrunA17_Chr7g0234801 38.211 123 68 2 96 210 388 510 1.05e-13 70.9
Msa1021540 MtrunA17_Chr1g0152361 38.462 117 64 1 102 210 227 343 1.79e-13 69.7
Msa1021540 MtrunA17_Chr5g0425741 33.766 154 88 4 105 258 447 586 2.82e-13 69.7
Msa1021540 MtrunA17_Chr3g0115681 30.000 140 87 2 107 246 429 557 4.74e-13 68.9
Msa1021540 MtrunA17_Chr7g0255551 36.585 123 70 2 96 210 371 493 5.88e-13 68.6
Msa1021540 MtrunA17_Chr5g0398901 31.193 109 68 2 102 210 2 103 2.02e-12 67.0
Msa1021540 MtrunA17_Chr3g0097231 33.333 123 75 2 99 221 8 123 2.97e-12 66.2
Msa1021540 MtrunA17_Chr4g0019501 29.545 132 83 1 99 220 181 312 2.63e-11 63.2
Msa1021540 MtrunA17_Chr4g0025271 34.545 110 70 1 99 206 100 209 8.18e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021540 AT4G30480.2 56.446 287 100 4 1 273 1 276 1.73e-105 308
Msa1021540 AT4G30480.1 47.664 214 87 4 1 200 1 203 2.35e-57 182
Msa1021540 AT4G30480.3 40.000 170 77 4 1 156 1 159 1.43e-30 112
Msa1021540 AT1G62390.1 36.800 125 74 2 99 221 48 169 1.54e-18 85.9
Msa1021540 AT3G58620.2 31.081 148 89 3 78 219 419 559 1.15e-17 83.2
Msa1021540 AT3G58620.1 31.081 148 89 3 78 219 419 559 1.26e-17 82.8
Msa1021540 AT3G25230.1 38.411 151 78 3 102 244 400 543 7.56e-16 77.4
Msa1021540 AT3G25230.2 38.411 151 78 3 102 244 400 543 9.30e-16 77.4
Msa1021540 AT2G42580.1 32.174 115 71 1 105 219 461 568 1.44e-15 77.0
Msa1021540 AT1G53300.1 30.469 128 82 2 90 217 453 573 2.62e-15 76.3
Msa1021540 AT1G56090.1 37.500 104 60 2 106 208 10 109 5.53e-15 73.6
Msa1021540 AT1G56090.2 37.500 104 60 2 106 208 84 183 1.65e-14 72.8
Msa1021540 AT4G32070.2 35.200 125 76 2 99 221 48 169 2.96e-14 73.2
Msa1021540 AT4G32070.1 35.200 125 76 2 99 221 48 169 2.96e-14 73.2
Msa1021540 AT3G54010.1 31.707 123 76 1 96 210 394 516 5.67e-14 72.0
Msa1021540 AT3G54010.2 31.707 123 76 1 96 210 304 426 8.04e-14 71.6
Msa1021540 AT5G65160.1 36.190 105 60 2 104 208 472 569 8.94e-14 71.6
Msa1021540 AT2G25290.2 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1021540 AT2G25290.3 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1021540 AT2G25290.4 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1021540 AT2G25290.1 32.061 131 84 2 99 227 49 176 1.30e-13 71.2
Msa1021540 AT5G20360.1 30.864 162 94 5 89 247 113 259 2.02e-13 70.5
Msa1021540 AT5G20360.2 30.864 162 94 5 89 247 113 259 2.02e-13 70.5
Msa1021540 AT5G20360.3 30.864 162 94 5 89 247 103 249 2.15e-13 70.5
Msa1021540 AT4G12400.1 35.780 109 63 2 102 210 2 103 2.40e-13 70.1
Msa1021540 AT4G12400.1 29.661 118 76 2 102 219 369 479 6.57e-11 62.8
Msa1021540 AT4G12400.2 35.780 109 63 2 102 210 2 103 2.65e-13 70.1
Msa1021540 AT4G12400.2 29.661 118 76 2 102 219 369 479 6.85e-11 62.8
Msa1021540 AT5G20360.5 29.775 178 104 7 75 247 8 169 4.84e-13 69.3
Msa1021540 AT5G20360.6 29.775 178 104 7 75 247 8 169 4.84e-13 69.3
Msa1021540 AT5G20360.7 31.373 153 87 5 98 247 62 199 8.39e-13 68.6
Msa1021540 AT5G20360.4 31.373 153 87 5 98 247 62 199 8.39e-13 68.6
Msa1021540 AT3G14950.1 29.032 186 108 6 90 263 484 657 1.06e-12 68.2
Msa1021540 AT5G48570.1 33.562 146 82 3 96 233 404 542 3.95e-12 66.6
Msa1021540 AT3G17970.1 29.577 142 90 2 82 220 451 585 5.93e-12 65.9
Msa1021540 AT5G21990.1 34.821 112 71 1 99 208 100 211 7.00e-12 65.9
Msa1021540 AT3G21640.1 32.099 162 86 6 99 247 176 326 9.81e-12 65.1
Msa1021540 AT1G62740.1 33.028 109 66 2 102 210 2 103 1.80e-11 64.7
Msa1021540 AT1G62740.1 27.338 139 86 2 89 219 361 492 2.51e-11 63.9
Msa1021540 AT5G12430.1 30.693 101 67 1 106 206 883 980 1.89e-11 64.7
Msa1021540 AT1G04190.1 27.778 162 102 6 106 267 19 165 3.38e-11 63.2
Msa1021540 AT1G56440.1 25.943 212 124 6 58 265 50 232 4.02e-11 63.5
Msa1021540 AT1G56440.2 25.943 212 124 6 58 265 40 222 5.24e-11 63.2
Msa1021540 AT2G41520.3 29.012 162 102 4 99 257 729 880 8.62e-11 62.8

Find 75 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGCTTCGAGGTTCTTC+TGG 0.237352 7_1:+45945668 None:intergenic
CCTCATTAACAATCAAGTTT+TGG 0.279865 7_1:+45940868 None:intergenic
TTCACTATGAAAGCTGATAT+TGG 0.304709 7_1:-45941086 Msa1021540:three_prime_UTR
AGGAACCAGTGTTTGGATCT+TGG 0.328792 7_1:+45942052 None:intergenic
AATTCTGTATTGGGACGCTT+TGG 0.332566 7_1:-45942102 Msa1021540:CDS
AACATTGTTGGAACGACGTC+AGG 0.356886 7_1:-45941129 Msa1021540:three_prime_UTR
GTTAACATTGTACGTGGAAT+TGG 0.359005 7_1:-45940896 Msa1021540:three_prime_UTR
AGTCCATGTGTTACTGATAT+TGG 0.365601 7_1:-45940994 Msa1021540:three_prime_UTR
GAAGGAGCAAGAGGGAGAAC+AGG 0.368826 7_1:-45945371 Msa1021540:CDS
AGCGTCGTTGCCGGCGGCAG+TGG 0.379439 7_1:+45945492 None:intergenic
CCAAAACTTGATTGTTAATG+AGG 0.380400 7_1:-45940868 Msa1021540:three_prime_UTR
GTTTGTGTTATAGGTAATCT+TGG 0.381493 7_1:-45941184 Msa1021540:intron
GAAAGTGAGTTGAACATTGT+TGG 0.394045 7_1:-45941141 Msa1021540:three_prime_UTR
GCAAATGAAGCAAAAGTAGA+AGG 0.396741 7_1:-45944047 Msa1021540:CDS
AGAAATGGGCAATTCTGTAT+TGG 0.397649 7_1:-45942112 Msa1021540:CDS
ATTCTGTATTGGGACGCTTT+GGG 0.401053 7_1:-45942101 Msa1021540:CDS
GGTTAACATCAACACGTCTA+TGG 0.402128 7_1:-45940939 Msa1021540:three_prime_UTR
CAATGAATCGGAATTGAAAC+AGG 0.408117 7_1:-45945281 Msa1021540:intron
GAAATGGGCAATTCTGTATT+GGG 0.422321 7_1:-45942111 Msa1021540:CDS
ATAGAATAGGAACCAGTGTT+TGG 0.423050 7_1:+45942045 None:intergenic
GCCCCTTGCTACTGTAAAAC+GGG 0.430768 7_1:-45942934 Msa1021540:CDS
TTCGGTGTCAGAGACTTGTT+TGG 0.434377 7_1:+45945581 None:intergenic
GCGTTCCATTGAGATAGAAT+AGG 0.437193 7_1:+45942032 None:intergenic
ACCAAAGCTTTAACATATGC+AGG 0.443256 7_1:+45943577 None:intergenic
ATAATAGTTTGAGACTTCAA+TGG 0.444996 7_1:-45941928 Msa1021540:three_prime_UTR
TCCTGCATATGTTAAAGCTT+TGG 0.447235 7_1:-45943578 Msa1021540:CDS
TTTCCCAGCTTGACCATTTG+AGG 0.452146 7_1:+45942974 None:intergenic
CCGGCGGCAGTGGCGTTGGA+TGG 0.453485 7_1:+45945502 None:intergenic
ACCGTCGGAAGCGTCGTTGC+CGG 0.458550 7_1:+45945483 None:intergenic
AGCCCCTTGCTACTGTAAAA+CGG 0.461219 7_1:-45942935 Msa1021540:CDS
TTAGAAATTGATCCCTCAAA+TGG 0.461242 7_1:-45942987 Msa1021540:CDS
GAGCGTATTTCCACAGATGA+AGG 0.467315 7_1:+45943945 None:intergenic
GATCCCTCAAATGGTCAAGC+TGG 0.469674 7_1:-45942978 Msa1021540:CDS
CACTTTCTACTTTATTTACA+CGG 0.478429 7_1:+45941157 None:intergenic
GAATGCTTTGATCAATGAAT+CGG 0.480599 7_1:-45945293 Msa1021540:CDS
CTACCATCTTCGAGAAGGTT+CGG 0.482686 7_1:+45945563 None:intergenic
GTTGCCGGCGGCAGTGGCGT+TGG 0.483157 7_1:+45945498 None:intergenic
TAAAGAATGCACAAAAGCAT+TGG 0.487615 7_1:-45943608 Msa1021540:CDS
ATAATTGCACTAAGCAAGAA+AGG 0.488669 7_1:-45941963 Msa1021540:three_prime_UTR
CCATCCAACGCCACTGCCGC+CGG 0.494207 7_1:-45945502 Msa1021540:CDS
GGACTGCTTTGAAGTTGTCA+AGG 0.494691 7_1:+45942073 None:intergenic
TTCCCAGCTTGACCATTTGA+GGG 0.500617 7_1:+45942975 None:intergenic
TGGTTCCTATTCTATCTCAA+TGG 0.506189 7_1:-45942037 Msa1021540:CDS
GTTAAAGCTTTGGTGAGAAG+AGG 0.519249 7_1:-45943568 Msa1021540:CDS
TTGAAACTACATACAACTTG+TGG 0.535753 7_1:-45940960 Msa1021540:three_prime_UTR
ACACCGAACCTTCTCGAAGA+TGG 0.536276 7_1:-45945566 Msa1021540:exon
GCTATCGAGATCAGCTTCGC+TGG 0.539161 7_1:+45945450 None:intergenic
CTCGATAGCGACGGCGATGA+CGG 0.540826 7_1:-45945436 Msa1021540:CDS
GCCGGCAACGACGCTTCCGA+CGG 0.542143 7_1:-45945484 Msa1021540:CDS
TGGAATCGCGTTTCGATCGT+CGG 0.546354 7_1:+45945522 None:intergenic
ATCCCTCAAATGGTCAAGCT+GGG 0.548108 7_1:-45942977 Msa1021540:CDS
AAAATGAAAGAAGAAATGAT+TGG 0.548679 7_1:-45942909 Msa1021540:intron
GTCGGAAGCGTCGTTGCCGG+CGG 0.566366 7_1:+45945486 None:intergenic
TCAGAGAAGTGTTTCGTCTG+AGG 0.566568 7_1:-45945335 Msa1021540:CDS
TGTAGATGGGAAGTATGAGG+AGG 0.584891 7_1:-45944012 Msa1021540:CDS
AGCACACAGCACGGTTTGCA+TGG 0.588997 7_1:+45943916 None:intergenic
AAGGGGCTCTAGTCGGCGAA+TGG 0.604837 7_1:+45942950 None:intergenic
TGAGCAAACGAAGGAGCAAG+AGG 0.609815 7_1:-45945380 Msa1021540:CDS
CAGTAGCAAGGGGCTCTAGT+CGG 0.619186 7_1:+45942943 None:intergenic
AGCTTTGGTGAGAAGAGGAG+AGG 0.620909 7_1:-45943563 Msa1021540:CDS
CATGTGTTACTGATATTGGT+TGG 0.622104 7_1:-45940990 Msa1021540:three_prime_UTR
ATCGAGATCAGCTTCGCTGG+CGG 0.625355 7_1:+45945453 None:intergenic
ACTAGACATGCCTTCATCTG+TGG 0.627350 7_1:-45943955 Msa1021540:CDS
CTACATTACTATATTAAAAG+CGG 0.630599 7_1:+45941015 None:intergenic
ACGTGAGTTAACATTGTACG+TGG 0.634133 7_1:-45940902 Msa1021540:three_prime_UTR
TATCACTACCATCTTCGAGA+AGG 0.639913 7_1:+45945558 None:intergenic
GCTGGCGGTTTCGAAACCGT+CGG 0.641137 7_1:+45945468 None:intergenic
CAACCAATATCAGTAACACA+TGG 0.644045 7_1:+45940991 None:intergenic
GCAGTCCAAGATCCAAACAC+TGG 0.648347 7_1:-45942057 Msa1021540:CDS
GAGCAAACGAAGGAGCAAGA+GGG 0.650540 7_1:-45945379 Msa1021540:CDS
GATAGCGACGGCGATGACGG+TGG 0.651321 7_1:-45945433 Msa1021540:CDS
ACATTGTTGGAACGACGTCA+GGG 0.656560 7_1:-45941128 Msa1021540:three_prime_UTR
GAAGCTGATCTCGATAGCGA+CGG 0.668142 7_1:-45945445 Msa1021540:CDS
AGAGATTCTTGAGCAAACGA+AGG 0.691545 7_1:-45945389 Msa1021540:CDS
TAGTCATTATGAGAAAACAA+AGG 0.716141 7_1:-45941900 Msa1021540:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAATATTTACATCAA+GGG - chr7_1:45943140-45943159 Msa1021540:intron 10.0%
!! AAAAGAAAAAAAAAAAAAAC+TGG + chr7_1:45943515-45943534 None:intergenic 10.0%
!!! TTTTCTTTTCAAAATATAAT+TGG - chr7_1:45943526-45943545 Msa1021540:CDS 10.0%
!! ATATACAAACAAATATTAAA+AGG + chr7_1:45943697-45943716 None:intergenic 10.0%
!!! ATAGTTTTTTTTTTTTGAAA+GGG - chr7_1:45944223-45944242 Msa1021540:intron 10.0%
!!! TTAAGTTTGGATTAAATTTT+GGG - chr7_1:45941503-45941522 Msa1021540:intron 15.0%
!! TTAATCGAACAATAAATTTA+AGG + chr7_1:45941837-45941856 None:intergenic 15.0%
!! ATAAATAAATAAATAAGCCT+GGG + chr7_1:45941966-45941985 None:intergenic 15.0%
!! AATAAATAAATAAATAAGCC+TGG + chr7_1:45941967-45941986 None:intergenic 15.0%
!!! TTTATTTATTTTTGCATTGA+AGG - chr7_1:45941981-45942000 Msa1021540:three_prime_UTR 15.0%
!!! TTATTTATTTTTGCATTGAA+GGG - chr7_1:45941982-45942001 Msa1021540:three_prime_UTR 15.0%
!! GAAAAATAATATTTACATCA+AGG - chr7_1:45943139-45943158 Msa1021540:intron 15.0%
!! ATTTATTATATTGTCTTTGT+AGG - chr7_1:45943715-45943734 Msa1021540:intron 15.0%
!! ATGGTATAAAATATAAATGA+AGG + chr7_1:45943774-45943793 None:intergenic 15.0%
!!! TTTGTTTTATGCATATATTT+TGG - chr7_1:45944118-45944137 Msa1021540:intron 15.0%
!!! CATAGTTTTTTTTTTTTGAA+AGG - chr7_1:45944222-45944241 Msa1021540:intron 15.0%
!! GAAGAAACTTCAAAAAAAAA+GGG + chr7_1:45941338-45941357 None:intergenic 20.0%
!! TGAAGAAACTTCAAAAAAAA+AGG + chr7_1:45941339-45941358 None:intergenic 20.0%
!!! TATGTGTTAGTTTTTGTTAA+TGG - chr7_1:45941374-45941393 Msa1021540:intron 20.0%
!!! GTTAAGTTTGGATTAAATTT+TGG - chr7_1:45941502-45941521 Msa1021540:intron 20.0%
!!! TAAATTGATTTTGACATGTT+TGG - chr7_1:45941538-45941557 Msa1021540:intron 20.0%
!! AAGTTGTAAATAACATAGTA+AGG - chr7_1:45943312-45943331 Msa1021540:intron 20.0%
!! AGTTGTAAATAACATAGTAA+GGG - chr7_1:45943313-45943332 Msa1021540:intron 20.0%
!! AAAATGAAAGAAGAAATGAT+TGG - chr7_1:45943644-45943663 Msa1021540:intron 20.0%
!! GAACTATATGAGAAATTATT+AGG - chr7_1:45943948-45943967 Msa1021540:CDS 20.0%
!!! ATTACCTACCATTTAATTTT+TGG - chr7_1:45944263-45944282 Msa1021540:intron 20.0%
!!! AAGCAAAATTTTATCTTAGA+CGG - chr7_1:45944318-45944337 Msa1021540:intron 20.0%
!! CTTCAAATTTGTATCTATTA+TGG - chr7_1:45945113-45945132 Msa1021540:intron 20.0%
!! TTAAGCAAAGGTTTAATAAA+GGG + chr7_1:45945165-45945184 None:intergenic 20.0%
!!! ACAAGTTTTGCTTTTTTTAA+GGG + chr7_1:45945206-45945225 None:intergenic 20.0%
!!! AACAAGTTTTGCTTTTTTTA+AGG + chr7_1:45945207-45945226 None:intergenic 20.0%
!! TTGAATAGATGAAAAATTGA+GGG + chr7_1:45945246-45945265 None:intergenic 20.0%
!! TTTGAATAGATGAAAAATTG+AGG + chr7_1:45945247-45945266 None:intergenic 20.0%
!! CTACATTACTATATTAAAAG+CGG + chr7_1:45945541-45945560 None:intergenic 20.0%
! TATAAACGAAACCCTAAATT+TGG + chr7_1:45941306-45941325 None:intergenic 25.0%
! CAATACATGAAGAAAATTTC+TGG - chr7_1:45941469-45941488 Msa1021540:intron 25.0%
!!! AAGAGTTTTTTTCGAATAGA+AGG - chr7_1:45942124-45942143 Msa1021540:CDS 25.0%
!!! AGAGTTTTTTTCGAATAGAA+GGG - chr7_1:45942125-45942144 Msa1021540:CDS 25.0%
! ATACTAGATGTATAACAAGA+GGG + chr7_1:45942219-45942238 None:intergenic 25.0%
! TATACTAGATGTATAACAAG+AGG + chr7_1:45942220-45942239 None:intergenic 25.0%
!! TCTTGTTATACATCTAGTAT+AGG - chr7_1:45942219-45942238 Msa1021540:intron 25.0%
! TCAAATCCAAAATCAGAAAA+AGG + chr7_1:45942412-45942431 None:intergenic 25.0%
!! GTAACAAACTTTTTGTAGAT+GGG - chr7_1:45942528-45942547 Msa1021540:intron 25.0%
! AATTACAGTATAAACGAAGA+AGG + chr7_1:45942680-45942699 None:intergenic 25.0%
! CAACAATAAGCATAACATAA+GGG + chr7_1:45942850-45942869 None:intergenic 25.0%
! ACAACAATAAGCATAACATA+AGG + chr7_1:45942851-45942870 None:intergenic 25.0%
!!! TATTTTAAGCTTGAACTTAC+CGG + chr7_1:45943052-45943071 None:intergenic 25.0%
! GTAAGTTCAAGCTTAAAATA+AGG - chr7_1:45943052-45943071 Msa1021540:intron 25.0%
! ATAGGAACCTTATATAAGTA+GGG + chr7_1:45943221-45943240 None:intergenic 25.0%
! AATAGGAACCTTATATAAGT+AGG + chr7_1:45943222-45943241 None:intergenic 25.0%
!! ATGTTATTTACAACTTGCTT+GGG + chr7_1:45943308-45943327 None:intergenic 25.0%
!! TATGTTATTTACAACTTGCT+TGG + chr7_1:45943309-45943328 None:intergenic 25.0%
!! TTTGATTTCTCAAACAAGAA+GGG - chr7_1:45943339-45943358 Msa1021540:intron 25.0%
! ATTATATTGTCTTTGTAGGA+TGG - chr7_1:45943719-45943738 Msa1021540:intron 25.0%
! AATCAGGAATATACTCAATT+GGG + chr7_1:45943817-45943836 None:intergenic 25.0%
! TAATCAGGAATATACTCAAT+TGG + chr7_1:45943818-45943837 None:intergenic 25.0%
! ATTTCTCATATAGTTCTTCT+AGG + chr7_1:45943944-45943963 None:intergenic 25.0%
!! TGCATAAAACAAACATTTTC+AGG + chr7_1:45944111-45944130 None:intergenic 25.0%
! TATAACAGAATGTCATATGT+AGG + chr7_1:45944295-45944314 None:intergenic 25.0%
! TAAATAGACAAACTTGGTTA+CGG + chr7_1:45944352-45944371 None:intergenic 25.0%
! ATGAAGTAAATAGACAAACT+TGG + chr7_1:45944358-45944377 None:intergenic 25.0%
! TGCAGAAAAATTGAAAGAAA+TGG - chr7_1:45944426-45944445 Msa1021540:intron 25.0%
! GCAGAAAAATTGAAAGAAAT+GGG - chr7_1:45944427-45944446 Msa1021540:intron 25.0%
!! ATAATAGTTTGAGACTTCAA+TGG - chr7_1:45944625-45944644 Msa1021540:intron 25.0%
! TAGTCATTATGAGAAAACAA+AGG - chr7_1:45944653-45944672 Msa1021540:intron 25.0%
! GTTAAGCAAAGGTTTAATAA+AGG + chr7_1:45945166-45945185 None:intergenic 25.0%
!!! ACGATTTTTTAGTTAAGCAA+AGG + chr7_1:45945177-45945196 None:intergenic 25.0%
!!! CAAGTTTTGCTTTTTTTAAG+GGG + chr7_1:45945205-45945224 None:intergenic 25.0%
!! CACTTTCTACTTTATTTACA+CGG + chr7_1:45945399-45945418 None:intergenic 25.0%
!!! TTAACGTTTTGAATTGTACT+TGG - chr7_1:45945495-45945514 Msa1021540:CDS 25.0%
!! ATTTTTGTTTCGTGTGTTTG+AGG + chr7_1:45940912-45940931 None:intergenic 30.0%
!!! CAAGAATCTCTTGTTTTTCT+CGG + chr7_1:45941155-45941174 None:intergenic 30.0%
GAATGCTTTGATCAATGAAT+CGG - chr7_1:45941260-45941279 Msa1021540:intron 30.0%
AGGTTCGATTTCCAAATTTA+GGG - chr7_1:45941292-45941311 Msa1021540:intron 30.0%
!!! AAAGCAGAAGAGTTTTGTTT+AGG - chr7_1:45941913-45941932 Msa1021540:three_prime_UTR 30.0%
!!! TCTTTTCTGATAGTTCTAGT+TGG - chr7_1:45942082-45942101 Msa1021540:CDS 30.0%
! ATAGAAGGGTTTTCTATTCA+TGG - chr7_1:45942139-45942158 Msa1021540:intron 30.0%
ATTATCATTACTCTAGCTAG+CGG + chr7_1:45942320-45942339 None:intergenic 30.0%
! GGTAACAAACTTTTTGTAGA+TGG - chr7_1:45942527-45942546 Msa1021540:intron 30.0%
ACATATGTCAAATATACCTC+AGG - chr7_1:45942903-45942922 Msa1021540:intron 30.0%
CATATGTCAAATATACCTCA+GGG - chr7_1:45942904-45942923 Msa1021540:intron 30.0%
! GTATTTTCATATTTTCCCTG+AGG + chr7_1:45942922-45942941 None:intergenic 30.0%
! TAAAGAATGCACAAAAGCAT+TGG - chr7_1:45942945-45942964 Msa1021540:CDS 30.0%
!! AAAGCTTGAACATTTTGAAG+AGG - chr7_1:45943020-45943039 Msa1021540:intron 30.0%
TTCAAGCTTAAAATAAGGCA+AGG - chr7_1:45943057-45943076 Msa1021540:intron 30.0%
TAATATTTACATCAAGGGTG+TGG - chr7_1:45943145-45943164 Msa1021540:intron 30.0%
! TGTTATTTACAACTTGCTTG+GGG + chr7_1:45943307-45943326 None:intergenic 30.0%
TGTAAATAACATAGTAAGGG+AGG - chr7_1:45943316-45943335 Msa1021540:intron 30.0%
! GTTTGATTTCTCAAACAAGA+AGG - chr7_1:45943338-45943357 Msa1021540:intron 30.0%
TTAGAAATTGATCCCTCAAA+TGG - chr7_1:45943566-45943585 Msa1021540:CDS 30.0%
!!! AGTCATTTTTGTCTTTCTCT+TGG - chr7_1:45943669-45943688 Msa1021540:intron 30.0%
GGAAATTAGGAATACTCTAA+TGG + chr7_1:45943793-45943812 None:intergenic 30.0%
ATCAGGAATATACTCAATTG+GGG + chr7_1:45943816-45943835 None:intergenic 30.0%
TATGTGTGAGATAGAACATT+AGG - chr7_1:45943890-45943909 Msa1021540:intron 30.0%
ATTAGGAAATGCTTCTTGTT+AGG - chr7_1:45943907-45943926 Msa1021540:CDS 30.0%
TTAGGAAATGCTTCTTGTTA+GGG - chr7_1:45943908-45943927 Msa1021540:CDS 30.0%
AGGAAAATGTTAGATGTCAA+TGG - chr7_1:45943968-45943987 Msa1021540:CDS 30.0%
TGACGTATAATCGAACATTA+TGG - chr7_1:45944005-45944024 Msa1021540:CDS 30.0%
! AAACCAAGTCTTATACTACT+AGG + chr7_1:45944059-45944078 None:intergenic 30.0%
ATGGCCAAAAATTAAATGGT+AGG + chr7_1:45944270-45944289 None:intergenic 30.0%
ATAATTGCACTAAGCAAGAA+AGG - chr7_1:45944590-45944609 Msa1021540:intron 30.0%
GTCTTCTCAACACTATTATT+TGG - chr7_1:45944854-45944873 Msa1021540:intron 30.0%
! GTATTTTATGATGTTCCTTG+TGG - chr7_1:45944965-45944984 Msa1021540:intron 30.0%
AATTAACTGTTCCTTCATGA+AGG - chr7_1:45945002-45945021 Msa1021540:intron 30.0%
ATTAACTGTTCCTTCATGAA+GGG - chr7_1:45945003-45945022 Msa1021540:intron 30.0%
GTTTGTGTTATAGGTAATCT+TGG - chr7_1:45945369-45945388 Msa1021540:CDS 30.0%
TTCACTATGAAAGCTGATAT+TGG - chr7_1:45945467-45945486 Msa1021540:CDS 30.0%
TTGAAACTACATACAACTTG+TGG - chr7_1:45945593-45945612 Msa1021540:five_prime_UTR 30.0%
! CCTCATTAACAATCAAGTTT+TGG + chr7_1:45945688-45945707 None:intergenic 30.0%
CAATGAATCGGAATTGAAAC+AGG - chr7_1:45941272-45941291 Msa1021540:intron 35.0%
CAGGTTCGATTTCCAAATTT+AGG - chr7_1:45941291-45941310 Msa1021540:intron 35.0%
GGTTTAGTGAGTGTTAAGTT+TGG - chr7_1:45941490-45941509 Msa1021540:intron 35.0%
AATGAAGTCTAGCACAAACA+CGG + chr7_1:45941738-45941757 None:intergenic 35.0%
AGGCAAAAATTCACGTTTCA+AGG + chr7_1:45941817-45941836 None:intergenic 35.0%
TATTGACCTTGCTTCAACTA+GGG + chr7_1:45941942-45941961 None:intergenic 35.0%
TTATTGACCTTGCTTCAACT+AGG + chr7_1:45941943-45941962 None:intergenic 35.0%
!! TTTCTGATAGTTCTAGTTGG+TGG - chr7_1:45942085-45942104 Msa1021540:CDS 35.0%
!! TTCTGATAGTTCTAGTTGGT+GGG - chr7_1:45942086-45942105 Msa1021540:CDS 35.0%
TTTCTATTCATGGCCTAAGT+TGG - chr7_1:45942149-45942168 Msa1021540:intron 35.0%
ACATCTAGTATAGGTGTGTT+TGG - chr7_1:45942228-45942247 Msa1021540:intron 35.0%
CATCTAGTATAGGTGTGTTT+GGG - chr7_1:45942229-45942248 Msa1021540:intron 35.0%
AGCTTGTGCAACTAGTAATT+TGG - chr7_1:45942383-45942402 Msa1021540:intron 35.0%
! TGGTAGCCTTTTTCTGATTT+TGG - chr7_1:45942403-45942422 Msa1021540:intron 35.0%
GCAAATGAAGCAAAAGTAGA+AGG - chr7_1:45942506-45942525 Msa1021540:intron 35.0%
!! TTTTGTAGATGGGAAGTATG+AGG - chr7_1:45942538-45942557 Msa1021540:intron 35.0%
!!! TGTGCTTTTTGAAACTGGTA+TGG - chr7_1:45942654-45942673 Msa1021540:intron 35.0%
TATGCGGTAAAGCAAAATAC+AGG + chr7_1:45942726-45942745 None:intergenic 35.0%
GTTCAACTAGTTGACATATG+CGG + chr7_1:45942742-45942761 None:intergenic 35.0%
TCCTGCATATGTTAAAGCTT+TGG - chr7_1:45942975-45942994 Msa1021540:CDS 35.0%
! ACCAAAGCTTTAACATATGC+AGG + chr7_1:45942979-45942998 None:intergenic 35.0%
GTACCTTCCCTACTTATATA+AGG - chr7_1:45943211-45943230 Msa1021540:intron 35.0%
GAACCTTATATAAGTAGGGA+AGG + chr7_1:45943217-45943236 None:intergenic 35.0%
GTCTTGAAGGGAAATAGAAT+AGG + chr7_1:45943239-45943258 None:intergenic 35.0%
! CTCCAGTTATCTGTTTGTTT+TGG - chr7_1:45943382-45943401 Msa1021540:intron 35.0%
AGCCAAAACAAACAGATAAC+TGG + chr7_1:45943387-45943406 None:intergenic 35.0%
TGGTGAAACGAAAAGATATG+GGG + chr7_1:45943495-45943514 None:intergenic 35.0%
CTGGTGAAACGAAAAGATAT+GGG + chr7_1:45943496-45943515 None:intergenic 35.0%
ACTGGTGAAACGAAAAGATA+TGG + chr7_1:45943497-45943516 None:intergenic 35.0%
TCAGGAATATACTCAATTGG+GGG + chr7_1:45943815-45943834 None:intergenic 35.0%
TTGAGGACAAGTCAATAATC+AGG + chr7_1:45943833-45943852 None:intergenic 35.0%
!! ATTATTGACTTGTCCTCAAG+TGG - chr7_1:45943834-45943853 Msa1021540:intron 35.0%
TAGGAAATGCTTCTTGTTAG+GGG - chr7_1:45943909-45943928 Msa1021540:CDS 35.0%
ATCGAACATTATGGTATCGT+CGG - chr7_1:45944014-45944033 Msa1021540:CDS 35.0%
! AAGTCTTATACTACTAGGTG+GGG + chr7_1:45944054-45944073 None:intergenic 35.0%
! CAAGTCTTATACTACTAGGT+GGG + chr7_1:45944055-45944074 None:intergenic 35.0%
! TCCTTGCACATGTAATTTGT+TGG - chr7_1:45944148-45944167 Msa1021540:intron 35.0%
! TGACTTTTCTTAGTTGCACT+TGG - chr7_1:45944178-45944197 Msa1021540:intron 35.0%
! GACTTTTCTTAGTTGCACTT+GGG - chr7_1:45944179-45944198 Msa1021540:intron 35.0%
GGCAATGGCCAAAAATTAAA+TGG + chr7_1:45944274-45944293 None:intergenic 35.0%
AGAATGTCATATGTAGGCAA+TGG + chr7_1:45944289-45944308 None:intergenic 35.0%
TCATCTGTCAAAGCAAATGA+TGG + chr7_1:45944395-45944414 None:intergenic 35.0%
AGAAATGGGCAATTCTGTAT+TGG - chr7_1:45944441-45944460 Msa1021540:intron 35.0%
GAAATGGGCAATTCTGTATT+GGG - chr7_1:45944442-45944461 Msa1021540:intron 35.0%
ATAGAATAGGAACCAGTGTT+TGG + chr7_1:45944511-45944530 None:intergenic 35.0%
TGGTTCCTATTCTATCTCAA+TGG - chr7_1:45944516-45944535 Msa1021540:intron 35.0%
AATTATCAATCTCCTTCGCA+TGG + chr7_1:45944718-45944737 None:intergenic 35.0%
AAAGCACGTTAACTGTAAGA+AGG + chr7_1:45944741-45944760 None:intergenic 35.0%
CTTACAGTTAACGTGCTTTA+AGG - chr7_1:45944742-45944761 Msa1021540:intron 35.0%
! CATTGTTATTGAGACATGCA+AGG - chr7_1:45944815-45944834 Msa1021540:intron 35.0%
! CTTTTCAACACTTTCCCATT+TGG + chr7_1:45944934-45944953 None:intergenic 35.0%
TCTATTATGGCACACAAGTT+AGG - chr7_1:45945126-45945145 Msa1021540:intron 35.0%
AATTGAGGGAAAGACAAATG+AGG + chr7_1:45945232-45945251 None:intergenic 35.0%
CGTCACTGCTTGTAAAATAT+TGG - chr7_1:45945326-45945345 Msa1021540:CDS 35.0%
! TGTCATGTGGTTTGTGTTAT+AGG - chr7_1:45945360-45945379 Msa1021540:CDS 35.0%
! GAAAGTGAGTTGAACATTGT+TGG - chr7_1:45945412-45945431 Msa1021540:CDS 35.0%
! AGTCCATGTGTTACTGATAT+TGG - chr7_1:45945559-45945578 Msa1021540:exon 35.0%
CAACCAATATCAGTAACACA+TGG + chr7_1:45945565-45945584 None:intergenic 35.0%
! CATGTGTTACTGATATTGGT+TGG - chr7_1:45945563-45945582 Msa1021540:exon 35.0%
GTTAACATTGTACGTGGAAT+TGG - chr7_1:45945657-45945676 Msa1021540:five_prime_UTR 35.0%
TTTAAGCTTCGAGGTTCTTC+TGG + chr7_1:45940888-45940907 None:intergenic 40.0%
!!! GTTTGAGGTTTTAAGCTTCG+AGG + chr7_1:45940897-45940916 None:intergenic 40.0%
TATCACTACCATCTTCGAGA+AGG + chr7_1:45940998-45941017 None:intergenic 40.0%
AGAGATTCTTGAGCAAACGA+AGG - chr7_1:45941164-45941183 Msa1021540:three_prime_UTR 40.0%
!!! TGTAGCACTGACACTTTTGA+TGG - chr7_1:45941585-45941604 Msa1021540:intron 40.0%
! CTTTTGATGGAATGCATGTC+CGG - chr7_1:45941598-45941617 Msa1021540:intron 40.0%
CGATGTGTTAGTGTTGTGTT+TGG - chr7_1:45941709-45941728 Msa1021540:intron 40.0%
! TATTCATGGCCTAAGTTGGA+GGG - chr7_1:45942153-45942172 Msa1021540:intron 40.0%
! ATGCTCATTGCATTTTGAGC+TGG - chr7_1:45942176-45942195 Msa1021540:intron 40.0%
TAGTATAGGTGTGTTTGGGT+GGG - chr7_1:45942233-45942252 Msa1021540:intron 40.0%
ATCTCTCTCTCTCTCTATAG+TGG - chr7_1:45942338-45942357 Msa1021540:intron 40.0%
! GTTTCAAAAAGCACACAGCA+CGG + chr7_1:45942649-45942668 None:intergenic 40.0%
!!! TGCTGTGTGCTTTTTGAAAC+TGG - chr7_1:45942649-45942668 Msa1021540:intron 40.0%
TTCCAGATTAAGCTGCTACA+AGG - chr7_1:45942805-45942824 Msa1021540:intron 40.0%
! GTTAAAGCTTTGGTGAGAAG+AGG - chr7_1:45942985-45943004 Msa1021540:CDS 40.0%
!! CATTTTGAAGAGGCAATTGC+CGG - chr7_1:45943030-45943049 Msa1021540:intron 40.0%
AGTGCAAACTTCAGATGAGT+TGG + chr7_1:45943093-45943112 None:intergenic 40.0%
! TTTACAACTTGCTTGGGGTT+GGG + chr7_1:45943302-45943321 None:intergenic 40.0%
! ATTTACAACTTGCTTGGGGT+TGG + chr7_1:45943303-45943322 None:intergenic 40.0%
! TTCCCGTTTTACAGTAGCAA+GGG + chr7_1:45943624-45943643 None:intergenic 40.0%
! TTTCCCGTTTTACAGTAGCA+AGG + chr7_1:45943625-45943644 None:intergenic 40.0%
TACTCAATTGGGGGGAAATT+AGG + chr7_1:45943806-45943825 None:intergenic 40.0%
CAGGAATATACTCAATTGGG+GGG + chr7_1:45943814-45943833 None:intergenic 40.0%
ATGTTACTCTGAACCACTTG+AGG + chr7_1:45943850-45943869 None:intergenic 40.0%
! CCAAGTCTTATACTACTAGG+TGG + chr7_1:45944056-45944075 None:intergenic 40.0%
CCACCTAGTAGTATAAGACT+TGG - chr7_1:45944053-45944072 Msa1021540:CDS 40.0%
GCCAACAAATTACATGTGCA+AGG + chr7_1:45944152-45944171 None:intergenic 40.0%
!! GCACATGTAATTTGTTGGCT+AGG - chr7_1:45944153-45944172 Msa1021540:intron 40.0%
! TGAAAGGGCGTAAACATCAT+AGG - chr7_1:45944238-45944257 Msa1021540:intron 40.0%
AATTCTGTATTGGGACGCTT+TGG - chr7_1:45944451-45944470 Msa1021540:intron 40.0%
ATTCTGTATTGGGACGCTTT+GGG - chr7_1:45944452-45944471 Msa1021540:intron 40.0%
GCGTTCCATTGAGATAGAAT+AGG + chr7_1:45944524-45944543 None:intergenic 40.0%
! TTGTGATTGATTCCATGCGA+AGG - chr7_1:45944703-45944722 Msa1021540:intron 40.0%
GACCACTCTATTAGTGAGAA+TGG + chr7_1:45944893-45944912 None:intergenic 40.0%
GTCATCTAATGGGACCAAAT+GGG - chr7_1:45944917-45944936 Msa1021540:intron 40.0%
ATGATGTTCCTTGTGGCTTA+AGG - chr7_1:45944972-45944991 Msa1021540:intron 40.0%
ATTATGGCACACAAGTTAGG+TGG - chr7_1:45945129-45945148 Msa1021540:intron 40.0%
GGATCTAATTCACTGTCATG+TGG - chr7_1:45945347-45945366 Msa1021540:CDS 40.0%
GGTTAACATCAACACGTCTA+TGG - chr7_1:45945614-45945633 Msa1021540:five_prime_UTR 40.0%
ACGTGAGTTAACATTGTACG+TGG - chr7_1:45945651-45945670 Msa1021540:five_prime_UTR 40.0%
!! TTCGGTGTCAGAGACTTGTT+TGG + chr7_1:45940975-45940994 None:intergenic 45.0%
CTACCATCTTCGAGAAGGTT+CGG + chr7_1:45940993-45941012 None:intergenic 45.0%
!! TCAGAGAAGTGTTTCGTCTG+AGG - chr7_1:45941218-45941237 Msa1021540:intron 45.0%
TGAAGCAAGGTCAATAACCC+AGG - chr7_1:45941946-45941965 Msa1021540:three_prime_UTR 45.0%
! CTATTCATGGCCTAAGTTGG+AGG - chr7_1:45942152-45942171 Msa1021540:intron 45.0%
AATGAGCATCCCTCCAACTT+AGG + chr7_1:45942165-45942184 None:intergenic 45.0%
CTAGTATAGGTGTGTTTGGG+TGG - chr7_1:45942232-45942251 Msa1021540:intron 45.0%
! TGTAGATGGGAAGTATGAGG+AGG - chr7_1:45942541-45942560 Msa1021540:intron 45.0%
ACTAGACATGCCTTCATCTG+TGG - chr7_1:45942598-45942617 Msa1021540:intron 45.0%
GAGCGTATTTCCACAGATGA+AGG + chr7_1:45942611-45942630 None:intergenic 45.0%
GACCTTGTAGCAGCTTAATC+TGG + chr7_1:45942810-45942829 None:intergenic 45.0%
TTATGCCTGACACTCTTCCT+TGG - chr7_1:45943174-45943193 Msa1021540:intron 45.0%
TACATGCGATTCCTCAACCA+AGG + chr7_1:45943194-45943213 None:intergenic 45.0%
AGATCTCGTAGCCATGCTAT+CGG + chr7_1:45943261-45943280 None:intergenic 45.0%
! TTACAACTTGCTTGGGGTTG+GGG + chr7_1:45943301-45943320 None:intergenic 45.0%
! TCTCAAACAAGAAGGGTGTG+TGG - chr7_1:45943346-45943365 Msa1021540:intron 45.0%
ATCCCTCAAATGGTCAAGCT+GGG - chr7_1:45943576-45943595 Msa1021540:CDS 45.0%
TTCCCAGCTTGACCATTTGA+GGG + chr7_1:45943581-45943600 None:intergenic 45.0%
TTTCCCAGCTTGACCATTTG+AGG + chr7_1:45943582-45943601 None:intergenic 45.0%
AGCCCCTTGCTACTGTAAAA+CGG - chr7_1:45943618-45943637 Msa1021540:CDS 45.0%
! TCCCGTTTTACAGTAGCAAG+GGG + chr7_1:45943623-45943642 None:intergenic 45.0%
!! GGACTGCTTTGAAGTTGTCA+AGG + chr7_1:45944483-45944502 None:intergenic 45.0%
AGGAACCAGTGTTTGGATCT+TGG + chr7_1:45944504-45944523 None:intergenic 45.0%
CTCTATTAGTGAGAATGGCG+TGG + chr7_1:45944888-45944907 None:intergenic 45.0%
CGCCATTCTCACTAATAGAG+TGG - chr7_1:45944888-45944907 Msa1021540:intron 45.0%
CTCACTAATAGAGTGGTCTC+AGG - chr7_1:45944895-45944914 Msa1021540:intron 45.0%
AGTGGTCTCAGGTCATCTAA+TGG - chr7_1:45944906-45944925 Msa1021540:intron 45.0%
GTGGTCTCAGGTCATCTAAT+GGG - chr7_1:45944907-45944926 Msa1021540:intron 45.0%
GGTCATCTAATGGGACCAAA+TGG - chr7_1:45944916-45944935 Msa1021540:intron 45.0%
TTAGAGAGCCTTAAGCCACA+AGG + chr7_1:45944983-45945002 None:intergenic 45.0%
TACAAGCAGTGACGTGAAGT+AGG + chr7_1:45945320-45945339 None:intergenic 45.0%
AACATTGTTGGAACGACGTC+AGG - chr7_1:45945424-45945443 Msa1021540:CDS 45.0%
ACATTGTTGGAACGACGTCA+GGG - chr7_1:45945425-45945444 Msa1021540:CDS 45.0%
ACACCGAACCTTCTCGAAGA+TGG - chr7_1:45940987-45941006 Msa1021540:three_prime_UTR 50.0%
TGGAATCGCGTTTCGATCGT+CGG + chr7_1:45941034-45941053 None:intergenic 50.0%
GAAGCTGATCTCGATAGCGA+CGG - chr7_1:45941108-45941127 Msa1021540:three_prime_UTR 50.0%
TGAGCAAACGAAGGAGCAAG+AGG - chr7_1:45941173-45941192 Msa1021540:three_prime_UTR 50.0%
GAGCAAACGAAGGAGCAAGA+GGG - chr7_1:45941174-45941193 Msa1021540:three_prime_UTR 50.0%
! GTCGTGTCAGTGTTGAACAC+CGG + chr7_1:45941620-45941639 None:intergenic 50.0%
AGGTAGCCCTAGTTGAAGCA+AGG - chr7_1:45941933-45941952 Msa1021540:three_prime_UTR 50.0%
! AGCTTTGGTGAGAAGAGGAG+AGG - chr7_1:45942990-45943009 Msa1021540:CDS 50.0%
!! CTCAACCAAGGAAGAGTGTC+AGG + chr7_1:45943182-45943201 None:intergenic 50.0%
CTGACACTCTTCCTTGGTTG+AGG - chr7_1:45943180-45943199 Msa1021540:intron 50.0%
TCCCTTCAAGACCGATAGCA+TGG - chr7_1:45943247-45943266 Msa1021540:intron 50.0%
GCCATGCTATCGGTCTTGAA+GGG + chr7_1:45943251-45943270 None:intergenic 50.0%
AGCCATGCTATCGGTCTTGA+AGG + chr7_1:45943252-45943271 None:intergenic 50.0%
GATCCCTCAAATGGTCAAGC+TGG - chr7_1:45943575-45943594 Msa1021540:CDS 50.0%
GCCCCTTGCTACTGTAAAAC+GGG - chr7_1:45943619-45943638 Msa1021540:CDS 50.0%
GTCTTTGTAGGATGGTGCGT+TGG - chr7_1:45943727-45943746 Msa1021540:intron 50.0%
GCAGTCCAAGATCCAAACAC+TGG - chr7_1:45944496-45944515 Msa1021540:intron 50.0%
AACAAGCGCACCCTTCATGA+AGG + chr7_1:45945016-45945035 None:intergenic 50.0%
AAGTAGGCTCACTCAGCACA+TGG + chr7_1:45945304-45945323 None:intergenic 50.0%
ATCGAGATCAGCTTCGCTGG+CGG + chr7_1:45941103-45941122 None:intergenic 55.0%
GCTATCGAGATCAGCTTCGC+TGG + chr7_1:45941106-45941125 None:intergenic 55.0%
GAAGGAGCAAGAGGGAGAAC+AGG - chr7_1:45941182-45941201 Msa1021540:intron 55.0%
AGCACACAGCACGGTTTGCA+TGG + chr7_1:45942640-45942659 None:intergenic 55.0%
GGTTGGGGTCTGTCTGAGTA+AGG + chr7_1:45943286-45943305 None:intergenic 55.0%
! CAGTAGCAAGGGGCTCTAGT+CGG + chr7_1:45943613-45943632 None:intergenic 55.0%
GCTGGCGGTTTCGAAACCGT+CGG + chr7_1:45941088-45941107 None:intergenic 60.0%
CTCGATAGCGACGGCGATGA+CGG - chr7_1:45941117-45941136 Msa1021540:three_prime_UTR 60.0%
! AAGGGGCTCTAGTCGGCGAA+TGG + chr7_1:45943606-45943625 None:intergenic 60.0%
!! ACCGTCGGAAGCGTCGTTGC+CGG + chr7_1:45941073-45941092 None:intergenic 65.0%
! GATAGCGACGGCGATGACGG+TGG - chr7_1:45941120-45941139 Msa1021540:three_prime_UTR 65.0%
CCATCCAACGCCACTGCCGC+CGG - chr7_1:45941051-45941070 Msa1021540:three_prime_UTR 70.0%
!! GTCGGAAGCGTCGTTGCCGG+CGG + chr7_1:45941070-45941089 None:intergenic 70.0%
GCCGGCAACGACGCTTCCGA+CGG - chr7_1:45941069-45941088 Msa1021540:three_prime_UTR 70.0%
! CCGGCGGCAGTGGCGTTGGA+TGG + chr7_1:45941054-45941073 None:intergenic 75.0%
GTTGCCGGCGGCAGTGGCGT+TGG + chr7_1:45941058-45941077 None:intergenic 75.0%
AGCGTCGTTGCCGGCGGCAG+TGG + chr7_1:45941064-45941083 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 45940868 45945707 45940868 ID=Msa1021540;Name=Msa1021540
chr7_1 mRNA 45940868 45945707 45940868 ID=Msa1021540-mRNA-1;Parent=Msa1021540;Name=Msa1021540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=138|1|1|1|0.8|0.66|6|454|274
chr7_1 exon 45940868 45941193 45940868 ID=Msa1021540-mRNA-1:exon:9097;Parent=Msa1021540-mRNA-1
chr7_1 exon 45941901 45942144 45941901 ID=Msa1021540-mRNA-1:exon:9096;Parent=Msa1021540-mRNA-1
chr7_1 exon 45942910 45943023 45942910 ID=Msa1021540-mRNA-1:exon:9095;Parent=Msa1021540-mRNA-1
chr7_1 exon 45943524 45943650 45943524 ID=Msa1021540-mRNA-1:exon:9094;Parent=Msa1021540-mRNA-1
chr7_1 exon 45943905 45944084 45943905 ID=Msa1021540-mRNA-1:exon:9093;Parent=Msa1021540-mRNA-1
chr7_1 exon 45945282 45945707 45945282 ID=Msa1021540-mRNA-1:exon:9092;Parent=Msa1021540-mRNA-1
chr7_1 five_prime_UTR 45945570 45945707 45945570 ID=Msa1021540-mRNA-1:five_prime_utr;Parent=Msa1021540-mRNA-1
chr7_1 CDS 45945282 45945569 45945282 ID=Msa1021540-mRNA-1:cds;Parent=Msa1021540-mRNA-1
chr7_1 CDS 45943905 45944084 45943905 ID=Msa1021540-mRNA-1:cds;Parent=Msa1021540-mRNA-1
chr7_1 CDS 45943524 45943650 45943524 ID=Msa1021540-mRNA-1:cds;Parent=Msa1021540-mRNA-1
chr7_1 CDS 45942910 45943023 45942910 ID=Msa1021540-mRNA-1:cds;Parent=Msa1021540-mRNA-1
chr7_1 CDS 45942029 45942144 45942029 ID=Msa1021540-mRNA-1:cds;Parent=Msa1021540-mRNA-1
chr7_1 three_prime_UTR 45941901 45942028 45941901 ID=Msa1021540-mRNA-1:three_prime_utr;Parent=Msa1021540-mRNA-1
chr7_1 three_prime_UTR 45940868 45941193 45940868 ID=Msa1021540-mRNA-1:three_prime_utr;Parent=Msa1021540-mRNA-1
Gene Sequence

>Msa1021540

ATGGTAGTGATAGAGCAAGAGAACACCGACGATCGAAACGCGATTCCATCCAACGCCACTGCCGCCGGCAACGACGCTTCCGACGGTTTCGAAACCGCCAGCGAAGCTGATCTCGATAGCGACGGCGATGACGGTGGAGATATCAGCCGAGAAAAACAAGAGATTCTTGAGCAAACGAAGGAGCAAGAGGGAGAACAGGAACAAGATGTTGCTCAGAGAAGTGTTTCGTCTGAGGATGCTTTGATCAATGAAGAGAATGCTTTGATCAATGAATCGGAATTGAAACAGAAAGCATTGAGTGAAGCAAATGAAGCAAAAGTAGAAGGTAACAAACTTTTTGTAGATGGGAAGTATGAGGAGGCTTTATCGCAATATCAACATGCTTTACAAGTTGCACTAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATGCAAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTGAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCCGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGGTCAAGCTGGGAAATCCATTCGCCGACTAGAGCCCCTTGCTACTGTAAAACGGGAAAAAATGAAAGAAGAAATGATTGAAAAATTGAAAGAAATGGGCAATTCTGTATTGGGACGCTTTGGGATGAGCCTTGACAACTTCAAAGCAGTCCAAGATCCAAACACTGGTTCCTATTCTATCTCAATGGAACGCTAA

Protein sequence

>Msa1021540

MVVIEQENTDDRNAIPSNATAAGNDASDGFETASEADLDSDGDDGGDISREKQEILEQTKEQEGEQEQDVAQRSVSSEDALINEENALINESELKQKALSEANEAKVEGNKLFVDGKYEEALSQYQHALQVALDMPSSVEIRSICHANRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNGQAGKSIRRLEPLATVKREKMKEEMIEKLKEMGNSVLGRFGMSLDNFKAVQDPNTGSYSISMER*