Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113300 | XP_003624144.1 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113300 | sp|Q9FFD0|PIN5_ARATH | 69.146 | 363 | 100 | 2 | 1 | 363 | 1 | 351 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113300 | Q673E6 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 726 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610850 | Msa1113300 | 0.832665 | 8.303583e-56 | -8.615850e-47 |
| Msa0622520 | Msa1113300 | 0.899861 | 1.302128e-77 | -8.615850e-47 |
| Msa0651340 | Msa1113300 | 0.828545 | 8.471886e-55 | -8.615850e-47 |
| Msa0693560 | Msa1113300 | 0.831196 | 1.914784e-55 | -8.615850e-47 |
| Msa0477070 | Msa1113300 | 0.803600 | 3.226261e-49 | -8.615850e-47 |
| Msa1028830 | Msa1113300 | 0.907623 | 4.150637e-81 | -8.615850e-47 |
| Msa1067950 | Msa1113300 | 0.907296 | 5.906786e-81 | -8.615850e-47 |
| Msa1113300 | Msa1190460 | 0.818352 | 2.049868e-52 | -8.615850e-47 |
| Msa0578890 | Msa1113300 | 0.838319 | 3.086345e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113300 | MtrunA17_Chr7g0249141 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 726 |
| Msa1113300 | MtrunA17_Chr7g0216571 | 39.554 | 359 | 212 | 2 | 1 | 359 | 12 | 365 | 5.17e-94 | 285 |
| Msa1113300 | MtrunA17_Chr6g0452821 | 38.781 | 361 | 218 | 2 | 1 | 360 | 1 | 359 | 7.14e-90 | 274 |
| Msa1113300 | MtrunA17_Chr7g0255941 | 45.813 | 203 | 87 | 3 | 162 | 359 | 405 | 589 | 4.83e-54 | 187 |
| Msa1113300 | MtrunA17_Chr7g0255941 | 46.193 | 197 | 94 | 2 | 1 | 188 | 1 | 194 | 6.42e-50 | 176 |
| Msa1113300 | MtrunA17_Chr4g0071571 | 45.408 | 196 | 95 | 2 | 169 | 359 | 435 | 623 | 2.04e-52 | 183 |
| Msa1113300 | MtrunA17_Chr4g0071571 | 49.359 | 156 | 78 | 1 | 1 | 155 | 1 | 156 | 6.63e-48 | 171 |
| Msa1113300 | MtrunA17_Chr4g0044181 | 49.412 | 170 | 81 | 1 | 195 | 359 | 488 | 657 | 4.95e-52 | 183 |
| Msa1113300 | MtrunA17_Chr4g0044181 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 2.44e-48 | 172 |
| Msa1113300 | MtrunA17_Chr1g0160461 | 48.045 | 179 | 87 | 2 | 187 | 359 | 441 | 619 | 1.78e-51 | 181 |
| Msa1113300 | MtrunA17_Chr1g0160461 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 1.99e-47 | 170 |
| Msa1113300 | MtrunA17_Chr4g0071551 | 41.919 | 198 | 102 | 3 | 1 | 188 | 1 | 195 | 3.87e-51 | 169 |
| Msa1113300 | MtrunA17_Chr6g0478431 | 42.381 | 210 | 112 | 2 | 159 | 359 | 393 | 602 | 5.06e-51 | 179 |
| Msa1113300 | MtrunA17_Chr6g0478431 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.03e-49 | 176 |
| Msa1113300 | MtrunA17_Chr8g0393111 | 50.000 | 156 | 77 | 1 | 1 | 155 | 1 | 156 | 4.03e-45 | 162 |
| Msa1113300 | MtrunA17_Chr8g0393111 | 40.541 | 185 | 81 | 3 | 175 | 331 | 334 | 517 | 4.62e-38 | 143 |
| Msa1113300 | MtrunA17_Chr1g0159341 | 48.235 | 170 | 83 | 1 | 195 | 359 | 356 | 525 | 1.96e-44 | 160 |
| Msa1113300 | MtrunA17_Chr1g0159341 | 47.742 | 155 | 81 | 0 | 1 | 155 | 1 | 155 | 5.74e-42 | 153 |
| Msa1113300 | MtrunA17_Chr2g0298971 | 45.806 | 155 | 84 | 0 | 1 | 155 | 1 | 155 | 1.20e-42 | 155 |
| Msa1113300 | MtrunA17_Chr2g0298971 | 38.614 | 202 | 80 | 5 | 179 | 340 | 320 | 517 | 1.18e-34 | 133 |
| Msa1113300 | MtrunA17_Chr4g0071561 | 43.860 | 171 | 90 | 2 | 169 | 337 | 150 | 316 | 5.04e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1113300 | AT5G16530.1 | 69.146 | 363 | 100 | 2 | 1 | 363 | 1 | 351 | 0.0 | 510 |
| Msa1113300 | AT5G16530.2 | 68.235 | 340 | 96 | 2 | 1 | 340 | 1 | 328 | 2.83e-167 | 470 |
| Msa1113300 | AT5G15100.1 | 36.729 | 373 | 218 | 4 | 1 | 361 | 1 | 367 | 6.11e-84 | 259 |
| Msa1113300 | AT5G57090.2 | 47.027 | 185 | 92 | 2 | 180 | 359 | 362 | 545 | 6.62e-55 | 189 |
| Msa1113300 | AT5G57090.2 | 57.407 | 54 | 23 | 0 | 102 | 155 | 2 | 55 | 2.91e-11 | 65.1 |
| Msa1113300 | AT5G57090.1 | 47.027 | 185 | 92 | 2 | 180 | 359 | 462 | 645 | 3.96e-54 | 189 |
| Msa1113300 | AT5G57090.1 | 44.670 | 197 | 97 | 2 | 1 | 188 | 1 | 194 | 3.67e-49 | 175 |
| Msa1113300 | AT2G01420.2 | 50.000 | 168 | 79 | 1 | 197 | 359 | 447 | 614 | 1.05e-52 | 184 |
| Msa1113300 | AT2G01420.2 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.05e-50 | 179 |
| Msa1113300 | AT2G01420.1 | 50.000 | 168 | 79 | 1 | 197 | 359 | 443 | 610 | 1.25e-52 | 184 |
| Msa1113300 | AT2G01420.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.18e-50 | 179 |
| Msa1113300 | AT2G01420.3 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 3.74e-51 | 178 |
| Msa1113300 | AT2G01420.3 | 42.254 | 71 | 36 | 1 | 197 | 262 | 447 | 517 | 2.56e-11 | 65.5 |
| Msa1113300 | AT1G73590.1 | 45.024 | 211 | 97 | 4 | 168 | 359 | 410 | 620 | 2.20e-50 | 178 |
| Msa1113300 | AT1G73590.1 | 52.258 | 155 | 74 | 0 | 1 | 155 | 1 | 155 | 1.48e-48 | 173 |
| Msa1113300 | AT1G70940.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 6.31e-50 | 177 |
| Msa1113300 | AT1G70940.1 | 50.299 | 167 | 78 | 1 | 198 | 359 | 472 | 638 | 6.94e-49 | 174 |
| Msa1113300 | AT1G23080.2 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.27e-49 | 174 |
| Msa1113300 | AT1G23080.2 | 37.634 | 93 | 51 | 2 | 175 | 262 | 426 | 516 | 2.37e-11 | 65.5 |
| Msa1113300 | AT1G23080.3 | 46.842 | 190 | 94 | 2 | 175 | 359 | 426 | 613 | 1.38e-49 | 176 |
| Msa1113300 | AT1G23080.3 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.71e-49 | 175 |
| Msa1113300 | AT1G23080.4 | 46.842 | 190 | 94 | 2 | 175 | 359 | 426 | 613 | 1.38e-49 | 176 |
| Msa1113300 | AT1G23080.4 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.71e-49 | 175 |
| Msa1113300 | AT1G23080.1 | 46.842 | 190 | 94 | 2 | 175 | 359 | 430 | 617 | 1.66e-49 | 176 |
| Msa1113300 | AT1G23080.1 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.64e-49 | 175 |
| Msa1113300 | AT1G77110.1 | 46.237 | 186 | 93 | 2 | 179 | 359 | 385 | 568 | 7.92e-48 | 170 |
| Msa1113300 | AT1G77110.1 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.88e-40 | 149 |
| Msa1113300 | AT1G77110.2 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.26e-40 | 149 |
| Msa1113300 | AT1G77110.2 | 43.976 | 166 | 86 | 2 | 179 | 339 | 385 | 548 | 1.34e-38 | 145 |
Find 94 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATGCATTTGGATTAC+TGG | 0.173929 | 7_3:-59518257 | None:intergenic |
| ATGACACAACCATAGGAATT+TGG | 0.178760 | 7_3:-59516441 | None:intergenic |
| ATATATATGTAGGTGGAATT+TGG | 0.227666 | 7_3:+59516923 | Msa1113300:intron |
| AATAAGAAGTTCATCTTAAA+AGG | 0.233267 | 7_3:-59515985 | None:intergenic |
| AAGATGAACTTCTTATTTAT+AGG | 0.235002 | 7_3:+59515991 | Msa1113300:CDS |
| TAACCGTTAAGTTTCGAAAA+TGG | 0.242326 | 7_3:-59518183 | None:intergenic |
| GGTCTCTGCAGGGTGATCTT+TGG | 0.249576 | 7_3:+59518087 | Msa1113300:intron |
| CATGGGCTTTCATATCTAAT+AGG | 0.262952 | 7_3:+59516472 | Msa1113300:CDS |
| TTTACGAATTGCCATCATTC+AGG | 0.296119 | 7_3:+59517282 | Msa1113300:CDS |
| GGGCACTGCCATGTTTAGTA+TGG | 0.302745 | 7_3:+59516998 | Msa1113300:CDS |
| CGGTTGTTCAAGCTATTATA+TGG | 0.310821 | 7_3:+59516205 | Msa1113300:CDS |
| TTGAAACCACATCGATGTTT+TGG | 0.313090 | 7_3:+59518364 | Msa1113300:three_prime_UTR |
| CTAACAAATTCTCTTGTTGT+TGG | 0.319301 | 7_3:+59516123 | Msa1113300:CDS |
| AATTCCTATGGTTGTGTCAT+TGG | 0.321480 | 7_3:+59516444 | Msa1113300:CDS |
| AGTTGCCTACTATGCAATAT+TGG | 0.329841 | 7_3:+59518134 | Msa1113300:CDS |
| GTAGCAAAGTAAGTTATTCT+TGG | 0.331589 | 7_3:+59516073 | Msa1113300:CDS |
| GCATATATCCATGATGCATT+TGG | 0.333965 | 7_3:-59518265 | None:intergenic |
| TGTTGCGGTGATTGCCCTTT+GGG | 0.341560 | 7_3:+59516041 | Msa1113300:CDS |
| CACTTTGCTTCTATTTGTGT+TGG | 0.343196 | 7_3:+59516230 | Msa1113300:CDS |
| TGACACAACCATAGGAATTT+GGG | 0.351513 | 7_3:-59516440 | None:intergenic |
| ATCAATTTGAAAAGAAACTT+TGG | 0.354047 | 7_3:-59518223 | None:intergenic |
| ATATGTGTTGTGCAAGAAAT+TGG | 0.354441 | 7_3:+59515723 | Msa1113300:five_prime_UTR |
| GTTGTGTCATTGGCATTTCA+TGG | 0.356642 | 7_3:+59516454 | Msa1113300:CDS |
| GGACCAAGTCTGACTGTATT+TGG | 0.359187 | 7_3:+59517184 | Msa1113300:CDS |
| TATAATTTCTGTTAGGTAGT+TGG | 0.369866 | 7_3:+59518310 | Msa1113300:three_prime_UTR |
| GCCACACACGCTTCATCAAT+TGG | 0.381628 | 7_3:-59516401 | None:intergenic |
| GAATTTGGAATTGCCAAGTA+TGG | 0.381720 | 7_3:+59516938 | Msa1113300:CDS |
| GGATCTTGTGGTTCAAGCTT+CGG | 0.388473 | 7_3:+59516185 | Msa1113300:CDS |
| GAAACCTATGTATGGACCTT+TGG | 0.390203 | 7_3:+59516158 | Msa1113300:CDS |
| GCTATTAGTGCCTTCATTGT+TGG | 0.394401 | 7_3:+59517244 | Msa1113300:CDS |
| GTGTTGGAGTTTAGAAGAAC+GGG | 0.402783 | 7_3:+59516246 | Msa1113300:CDS |
| AAGTCTGACTGTATTTGGTT+TGG | 0.414306 | 7_3:+59517189 | Msa1113300:CDS |
| AAATTCCAATATTGCATAGT+AGG | 0.429210 | 7_3:-59518139 | None:intergenic |
| AAACCTATGTATGGACCTTT+GGG | 0.431609 | 7_3:+59516159 | Msa1113300:CDS |
| TTGTTGCGGTGATTGCCCTT+TGG | 0.434076 | 7_3:+59516040 | Msa1113300:CDS |
| CGCTTCATCAATTGGAAGAA+AGG | 0.444864 | 7_3:-59516393 | None:intergenic |
| ATCATGTCAAAGGCTGGAAC+GGG | 0.450270 | 7_3:+59516978 | Msa1113300:CDS |
| ACTTAACGGTTAAGGTTAAG+TGG | 0.451881 | 7_3:+59518194 | Msa1113300:three_prime_UTR |
| TTACTAATGCTACTAGCCTT+CGG | 0.463777 | 7_3:-59516297 | None:intergenic |
| ATGAAGGATGTTATGGATTG+TGG | 0.476975 | 7_3:-59517828 | None:intergenic |
| CCAATGGTGAAACCTATGTA+TGG | 0.489658 | 7_3:+59516150 | Msa1113300:CDS |
| GTTTAGAAGAACGGGAATAG+AGG | 0.490862 | 7_3:+59516254 | Msa1113300:CDS |
| ATAGCAAACCCAAATTCCTA+TGG | 0.491172 | 7_3:+59516432 | Msa1113300:CDS |
| TTTGCACTAATATTAGGCTA+TGG | 0.493851 | 7_3:+59515850 | Msa1113300:CDS |
| AAAATAAATAACCTGAATGA+TGG | 0.498324 | 7_3:-59517293 | None:intergenic |
| TGTGTTGGAGTTTAGAAGAA+CGG | 0.506228 | 7_3:+59516245 | Msa1113300:CDS |
| CCAGTAATCCAAATGCATCA+TGG | 0.515621 | 7_3:+59518257 | Msa1113300:three_prime_UTR |
| GGAATTGCCAAGTATGGTAG+AGG | 0.516261 | 7_3:+59516944 | Msa1113300:CDS |
| TTGTGTCATTGGCATTTCAT+GGG | 0.516530 | 7_3:+59516455 | Msa1113300:CDS |
| ATAGACCCCTCTACCATACT+TGG | 0.519190 | 7_3:-59516951 | None:intergenic |
| GCTACTACACTTAGCCCAAA+GGG | 0.523271 | 7_3:-59516055 | None:intergenic |
| ATATTGATCATGTCAAAGGC+TGG | 0.526511 | 7_3:+59516972 | Msa1113300:CDS |
| GATCATGTCAAAGGCTGGAA+CGG | 0.541123 | 7_3:+59516977 | Msa1113300:CDS |
| ACCTTTGGGCGTGGATCTTG+TGG | 0.542649 | 7_3:+59516173 | Msa1113300:CDS |
| ATCAAAGTTAATCATTGTTG+CGG | 0.547075 | 7_3:+59516026 | Msa1113300:CDS |
| GCACTAATAGCCATTGCTGC+TGG | 0.549589 | 7_3:-59517232 | None:intergenic |
| CCATACATAGGTTTCACCAT+TGG | 0.550223 | 7_3:-59516150 | None:intergenic |
| CATTGCTGGACCAGCAGCAA+TGG | 0.551223 | 7_3:+59517222 | Msa1113300:CDS |
| GCATAGTAGGCAACTAAGAT+CGG | 0.552417 | 7_3:-59518126 | None:intergenic |
| GCCTTCATTGTTGGATTGCG+TGG | 0.554074 | 7_3:+59517253 | Msa1113300:CDS |
| TATTAGGCTATGGTTCTGTA+AGG | 0.555934 | 7_3:+59515860 | Msa1113300:CDS |
| ACCACGCAATCCAACAATGA+AGG | 0.564698 | 7_3:-59517254 | None:intergenic |
| TATGTATGGACCTTTGGGCG+TGG | 0.570033 | 7_3:+59516164 | Msa1113300:CDS |
| GTCTATATTGATCATGTCAA+AGG | 0.570735 | 7_3:+59516968 | Msa1113300:CDS |
| TTTAGAAGAACGGGAATAGA+GGG | 0.575235 | 7_3:+59516255 | Msa1113300:CDS |
| CTTAACGGTTAAGGTTAAGT+GGG | 0.576600 | 7_3:+59518195 | Msa1113300:three_prime_UTR |
| TGCTACTACACTTAGCCCAA+AGG | 0.578291 | 7_3:-59516056 | None:intergenic |
| GCTATGGTTCTGTAAGGTGG+TGG | 0.583525 | 7_3:+59515866 | Msa1113300:CDS |
| AGGTGAAGAAAGTAAAGATG+TGG | 0.584615 | 7_3:+59516332 | Msa1113300:CDS |
| GGCACTGCCATGTTTAGTAT+GGG | 0.585108 | 7_3:+59516999 | Msa1113300:CDS |
| GAATTGCCAAGTATGGTAGA+GGG | 0.589216 | 7_3:+59516945 | Msa1113300:CDS |
| TGTGTTGTGCAAGAAATTGG+AGG | 0.589694 | 7_3:+59515726 | Msa1113300:five_prime_UTR |
| GTGAACTCGAAGGCGAAGAG+TGG | 0.590300 | 7_3:-59515949 | None:intergenic |
| TCCAATTGATGAAGCGTGTG+TGG | 0.597137 | 7_3:+59516400 | Msa1113300:CDS |
| ACGCCCAAAGGTCCATACAT+AGG | 0.598945 | 7_3:-59516162 | None:intergenic |
| CAAGAGAAAGTGATTTCGTG+TGG | 0.600700 | 7_3:+59517163 | Msa1113300:CDS |
| AATATTAGTGCAAAATAGAG+TGG | 0.603576 | 7_3:-59515841 | None:intergenic |
| TCTTGTTGTTGGAATACCAA+TGG | 0.606269 | 7_3:+59516134 | Msa1113300:CDS |
| ATTAGTAATGTGACATGTGA+AGG | 0.611957 | 7_3:+59516312 | Msa1113300:CDS |
| ACCACAAGATCCACGCCCAA+AGG | 0.613248 | 7_3:-59516174 | None:intergenic |
| TAGGCTATGGTTCTGTAAGG+TGG | 0.613388 | 7_3:+59515863 | Msa1113300:CDS |
| GTACAAAGTTATTGTAGCAG+TGG | 0.621495 | 7_3:+59515816 | Msa1113300:CDS |
| AAACCAAATACAGTCAGACT+TGG | 0.623723 | 7_3:-59517187 | None:intergenic |
| ACTAGCCTTCGGTTTCAAAG+TGG | 0.629563 | 7_3:-59516286 | None:intergenic |
| AAGCTCACCCATACTAAACA+TGG | 0.631541 | 7_3:-59517006 | None:intergenic |
| TATAACCACTTTGAAACCGA+AGG | 0.633348 | 7_3:+59516281 | Msa1113300:CDS |
| AGAATACGAACTACATGCCG+AGG | 0.641366 | 7_3:+59517860 | Msa1113300:CDS |
| GAACTTCTTATTTATAGGCG+CGG | 0.645236 | 7_3:+59515996 | Msa1113300:CDS |
| AATGCCAATGACACAACCAT+AGG | 0.648775 | 7_3:-59516448 | None:intergenic |
| TTACGCAGTGCTAAGAACCT+CGG | 0.657922 | 7_3:-59517877 | None:intergenic |
| AATTGCCAAGTATGGTAGAG+GGG | 0.692420 | 7_3:+59516946 | Msa1113300:CDS |
| GATGTGCGCGGTGAACTCGA+AGG | 0.703238 | 7_3:-59515959 | None:intergenic |
| TCAGAACCAAAACATCGATG+TGG | 0.711482 | 7_3:-59518370 | None:intergenic |
| CTTAAAAGGATCGATGTGCG+CGG | 0.711568 | 7_3:-59515971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAATTTATTTTAAAA+GGG | - | chr7_3:59516661-59516680 | None:intergenic | 0.0% |
| !!! | ATATTATAATTTATTTTAAA+AGG | - | chr7_3:59516662-59516681 | None:intergenic | 0.0% |
| !! | ATAAAAAAAAATTCCTATAT+CGG | + | chr7_3:59516594-59516613 | Msa1113300:intron | 10.0% |
| !! | GAAATTATAAATTGATTATA+AGG | - | chr7_3:59516769-59516788 | None:intergenic | 10.0% |
| !! | TAAAAAATAATAATTAGACA+AGG | - | chr7_3:59517785-59517804 | None:intergenic | 10.0% |
| !! | AGAAAACTAAAAAAAATGAT+TGG | + | chr7_3:59515781-59515800 | Msa1113300:exon | 15.0% |
| !! | GAAAACTAAAAAAAATGATT+GGG | + | chr7_3:59515782-59515801 | Msa1113300:exon | 15.0% |
| !! | TAAAAAAAAATTCCTATATC+GGG | + | chr7_3:59516595-59516614 | Msa1113300:intron | 15.0% |
| !!! | AATTTACAATGAAGAATTTT+AGG | + | chr7_3:59516719-59516738 | Msa1113300:intron | 15.0% |
| !! | ATATATAATATATATGTAGG+TGG | + | chr7_3:59516916-59516935 | Msa1113300:intron | 15.0% |
| !!! | ATTTTTTATTTATTTGATGC+AGG | + | chr7_3:59517797-59517816 | Msa1113300:intron | 15.0% |
| !!! | TTTTGATTATAATTTCTGTT+AGG | + | chr7_3:59518303-59518322 | Msa1113300:three_prime_UTR | 15.0% |
| !! | AATAAGAAGTTCATCTTAAA+AGG | - | chr7_3:59515988-59516007 | None:intergenic | 20.0% |
| !!! | AAGATGAACTTCTTATTTAT+AGG | + | chr7_3:59515991-59516010 | Msa1113300:CDS | 20.0% |
| !! | TATTTAATTAGACATGCAAA+TGG | - | chr7_3:59516524-59516543 | None:intergenic | 20.0% |
| !!! | CTAATCAAGCTATTTATTTT+TGG | - | chr7_3:59516566-59516585 | None:intergenic | 20.0% |
| !! | AAATTTGAAGAGATAAATGT+GGG | - | chr7_3:59516867-59516886 | None:intergenic | 20.0% |
| !! | AAAATTTGAAGAGATAAATG+TGG | - | chr7_3:59516868-59516887 | None:intergenic | 20.0% |
| !! | TATTAGCATTAAACATAGTT+AGG | + | chr7_3:59517065-59517084 | Msa1113300:intron | 20.0% |
| !! | ATTAGCATTAAACATAGTTA+GGG | + | chr7_3:59517066-59517085 | Msa1113300:intron | 20.0% |
| !! | AAAATAAATAACCTGAATGA+TGG | - | chr7_3:59517296-59517315 | None:intergenic | 20.0% |
| !! | CACACACTAAAAAAAAAAAA+AGG | + | chr7_3:59517348-59517367 | Msa1113300:intron | 20.0% |
| !! | TCTTTGCTAAAAAAAAATAG+AGG | - | chr7_3:59517459-59517478 | None:intergenic | 20.0% |
| !!! | ATGTAGTAGATTTGTTAAAA+TGG | + | chr7_3:59517643-59517662 | Msa1113300:intron | 20.0% |
| !!! | AATGGATTAGCTAATATTTA+AGG | + | chr7_3:59517661-59517680 | Msa1113300:intron | 20.0% |
| !! | AAAACACAAAAAATGTTGTT+TGG | - | chr7_3:59517738-59517757 | None:intergenic | 20.0% |
| !!! | TTTTGTGTTTTTAAAGACTT+CGG | + | chr7_3:59517747-59517766 | Msa1113300:intron | 20.0% |
| !! | ATCAATTTGAAAAGAAACTT+TGG | - | chr7_3:59518226-59518245 | None:intergenic | 20.0% |
| !!! | AAAGTTTTGTTACATTTAGT+GGG | - | chr7_3:59518346-59518365 | None:intergenic | 20.0% |
| !! | TAGTTTTCTTTTCTTTTGTG+TGG | - | chr7_3:59515770-59515789 | None:intergenic | 25.0% |
| ! | AACTAAAAAAAATGATTGGG+TGG | + | chr7_3:59515785-59515804 | Msa1113300:exon | 25.0% |
| ! | ACTAAAAAAAATGATTGGGT+GGG | + | chr7_3:59515786-59515805 | Msa1113300:exon | 25.0% |
| ! | AATATTAGTGCAAAATAGAG+TGG | - | chr7_3:59515844-59515863 | None:intergenic | 25.0% |
| !! | CTCTATTTTGCACTAATATT+AGG | + | chr7_3:59515844-59515863 | Msa1113300:CDS | 25.0% |
| ! | ATCAAAGTTAATCATTGTTG+CGG | + | chr7_3:59516026-59516045 | Msa1113300:CDS | 25.0% |
| !!! | TCTTGTCTTAAAGTTGTTTT+AGG | - | chr7_3:59516638-59516657 | None:intergenic | 25.0% |
| ! | ATATATATGTAGGTGGAATT+TGG | + | chr7_3:59516923-59516942 | Msa1113300:intron | 25.0% |
| ! | TAACCTCTAAATATTACAAG+AGG | + | chr7_3:59517371-59517390 | Msa1113300:intron | 25.0% |
| !! | ATTTTTGTCTATGCTATAAG+TGG | - | chr7_3:59517436-59517455 | None:intergenic | 25.0% |
| ! | ACAAATCTACTACATATGAA+TGG | - | chr7_3:59517638-59517657 | None:intergenic | 25.0% |
| ! | GTATTCTTTAGCAAAAATGA+AGG | - | chr7_3:59517847-59517866 | None:intergenic | 25.0% |
| ! | ATTTCTTCAATGTTCAAGAA+TGG | + | chr7_3:59517907-59517926 | Msa1113300:intron | 25.0% |
| ! | AAATTCCAATATTGCATAGT+AGG | - | chr7_3:59518142-59518161 | None:intergenic | 25.0% |
| !! | ATACCATTTTCGAAACTTAA+CGG | + | chr7_3:59518180-59518199 | Msa1113300:three_prime_UTR | 25.0% |
| ! | TATAATTTCTGTTAGGTAGT+TGG | + | chr7_3:59518310-59518329 | Msa1113300:three_prime_UTR | 25.0% |
| !!! | CAAAGTTTTGTTACATTTAG+TGG | - | chr7_3:59518347-59518366 | None:intergenic | 25.0% |
| ATATGTGTTGTGCAAGAAAT+TGG | + | chr7_3:59515723-59515742 | Msa1113300:five_prime_UTR | 30.0% | |
| TTTGCACTAATATTAGGCTA+TGG | + | chr7_3:59515850-59515869 | Msa1113300:CDS | 30.0% | |
| GTAGCAAAGTAAGTTATTCT+TGG | + | chr7_3:59516073-59516092 | Msa1113300:CDS | 30.0% | |
| ! | CTAACAAATTCTCTTGTTGT+TGG | + | chr7_3:59516123-59516142 | Msa1113300:CDS | 30.0% |
| ATTAGTAATGTGACATGTGA+AGG | + | chr7_3:59516312-59516331 | Msa1113300:CDS | 30.0% | |
| TTGATTATAAGGAAATACCG+TGG | - | chr7_3:59516758-59516777 | None:intergenic | 30.0% | |
| GTCTATATTGATCATGTCAA+AGG | + | chr7_3:59516968-59516987 | Msa1113300:CDS | 30.0% | |
| !! | TATATGTGATGTGTTGATTC+AGG | + | chr7_3:59517124-59517143 | Msa1113300:intron | 30.0% |
| !!! | TGTTGATTCAGGTATTTTCA+TGG | + | chr7_3:59517135-59517154 | Msa1113300:intron | 30.0% |
| !!! | TTGGTTTTAAAGTTCATTGC+TGG | + | chr7_3:59517208-59517227 | Msa1113300:CDS | 30.0% |
| TAGCCTCTTGTAATATTTAG+AGG | - | chr7_3:59517377-59517396 | None:intergenic | 30.0% | |
| !!! | GTTTTTGGCAAAAACAAAAG+AGG | - | chr7_3:59517488-59517507 | None:intergenic | 30.0% |
| ! | AATCATACGAATGATTTGGA+TGG | - | chr7_3:59517554-59517573 | None:intergenic | 30.0% |
| GTTGAATCATACGAATGATT+TGG | - | chr7_3:59517558-59517577 | None:intergenic | 30.0% | |
| AGCAAAAATGAAGGATGTTA+TGG | - | chr7_3:59517838-59517857 | None:intergenic | 30.0% | |
| TAACCGTTAAGTTTCGAAAA+TGG | - | chr7_3:59518186-59518205 | None:intergenic | 30.0% | |
| ! | TTTTCGAAACTTAACGGTTA+AGG | + | chr7_3:59518186-59518205 | Msa1113300:three_prime_UTR | 30.0% |
| GTACAAAGTTATTGTAGCAG+TGG | + | chr7_3:59515816-59515835 | Msa1113300:CDS | 35.0% | |
| ! | TATTAGGCTATGGTTCTGTA+AGG | + | chr7_3:59515860-59515879 | Msa1113300:CDS | 35.0% |
| ! | GAACTTCTTATTTATAGGCG+CGG | + | chr7_3:59515996-59516015 | Msa1113300:CDS | 35.0% |
| !! | TCTTGTTGTTGGAATACCAA+TGG | + | chr7_3:59516134-59516153 | Msa1113300:CDS | 35.0% |
| AAACCTATGTATGGACCTTT+GGG | + | chr7_3:59516159-59516178 | Msa1113300:CDS | 35.0% | |
| CGGTTGTTCAAGCTATTATA+TGG | + | chr7_3:59516205-59516224 | Msa1113300:CDS | 35.0% | |
| CACTTTGCTTCTATTTGTGT+TGG | + | chr7_3:59516230-59516249 | Msa1113300:CDS | 35.0% | |
| TGTGTTGGAGTTTAGAAGAA+CGG | + | chr7_3:59516245-59516264 | Msa1113300:CDS | 35.0% | |
| TTTAGAAGAACGGGAATAGA+GGG | + | chr7_3:59516255-59516274 | Msa1113300:CDS | 35.0% | |
| !! | TATAACCACTTTGAAACCGA+AGG | + | chr7_3:59516281-59516300 | Msa1113300:CDS | 35.0% |
| !! | TTACTAATGCTACTAGCCTT+CGG | - | chr7_3:59516300-59516319 | None:intergenic | 35.0% |
| AGGTGAAGAAAGTAAAGATG+TGG | + | chr7_3:59516332-59516351 | Msa1113300:CDS | 35.0% | |
| ATAGCAAACCCAAATTCCTA+TGG | + | chr7_3:59516432-59516451 | Msa1113300:CDS | 35.0% | |
| TGACACAACCATAGGAATTT+GGG | - | chr7_3:59516443-59516462 | None:intergenic | 35.0% | |
| ATGACACAACCATAGGAATT+TGG | - | chr7_3:59516444-59516463 | None:intergenic | 35.0% | |
| AATTCCTATGGTTGTGTCAT+TGG | + | chr7_3:59516444-59516463 | Msa1113300:CDS | 35.0% | |
| ! | TTGTGTCATTGGCATTTCAT+GGG | + | chr7_3:59516455-59516474 | Msa1113300:CDS | 35.0% |
| CATGGGCTTTCATATCTAAT+AGG | + | chr7_3:59516472-59516491 | Msa1113300:CDS | 35.0% | |
| ATAGATACTGAACCCGATAT+AGG | - | chr7_3:59516610-59516629 | None:intergenic | 35.0% | |
| ! | GAATTTGGAATTGCCAAGTA+TGG | + | chr7_3:59516938-59516957 | Msa1113300:CDS | 35.0% |
| ATATTGATCATGTCAAAGGC+TGG | + | chr7_3:59516972-59516991 | Msa1113300:CDS | 35.0% | |
| AAACCAAATACAGTCAGACT+TGG | - | chr7_3:59517190-59517209 | None:intergenic | 35.0% | |
| AAGTCTGACTGTATTTGGTT+TGG | + | chr7_3:59517189-59517208 | Msa1113300:CDS | 35.0% | |
| TTTACGAATTGCCATCATTC+AGG | + | chr7_3:59517282-59517301 | Msa1113300:CDS | 35.0% | |
| ! | TACGAATGATTTGGATGGTA+CGG | - | chr7_3:59517549-59517568 | None:intergenic | 35.0% |
| ! | ATGAAGGATGTTATGGATTG+TGG | - | chr7_3:59517831-59517850 | None:intergenic | 35.0% |
| !!! | TTCAAATTTTTGGTCTCTGC+AGG | + | chr7_3:59518076-59518095 | Msa1113300:intron | 35.0% |
| !!! | TCAAATTTTTGGTCTCTGCA+GGG | + | chr7_3:59518077-59518096 | Msa1113300:intron | 35.0% |
| AGTTGCCTACTATGCAATAT+TGG | + | chr7_3:59518134-59518153 | Msa1113300:CDS | 35.0% | |
| ACTTAACGGTTAAGGTTAAG+TGG | + | chr7_3:59518194-59518213 | Msa1113300:three_prime_UTR | 35.0% | |
| CTTAACGGTTAAGGTTAAGT+GGG | + | chr7_3:59518195-59518214 | Msa1113300:three_prime_UTR | 35.0% | |
| GCATATATCCATGATGCATT+TGG | - | chr7_3:59518268-59518287 | None:intergenic | 35.0% | |
| ! | TTGAAACCACATCGATGTTT+TGG | + | chr7_3:59518364-59518383 | Msa1113300:three_prime_UTR | 35.0% |
| TGTGTTGTGCAAGAAATTGG+AGG | + | chr7_3:59515726-59515745 | Msa1113300:five_prime_UTR | 40.0% | |
| CCATACATAGGTTTCACCAT+TGG | - | chr7_3:59516153-59516172 | None:intergenic | 40.0% | |
| CCAATGGTGAAACCTATGTA+TGG | + | chr7_3:59516150-59516169 | Msa1113300:CDS | 40.0% | |
| GAAACCTATGTATGGACCTT+TGG | + | chr7_3:59516158-59516177 | Msa1113300:CDS | 40.0% | |
| GTGTTGGAGTTTAGAAGAAC+GGG | + | chr7_3:59516246-59516265 | Msa1113300:CDS | 40.0% | |
| GTTTAGAAGAACGGGAATAG+AGG | + | chr7_3:59516254-59516273 | Msa1113300:CDS | 40.0% | |
| CGCTTCATCAATTGGAAGAA+AGG | - | chr7_3:59516396-59516415 | None:intergenic | 40.0% | |
| AATGCCAATGACACAACCAT+AGG | - | chr7_3:59516451-59516470 | None:intergenic | 40.0% | |
| ! | GTTGTGTCATTGGCATTTCA+TGG | + | chr7_3:59516454-59516473 | Msa1113300:CDS | 40.0% |
| GAATTGCCAAGTATGGTAGA+GGG | + | chr7_3:59516945-59516964 | Msa1113300:CDS | 40.0% | |
| AATTGCCAAGTATGGTAGAG+GGG | + | chr7_3:59516946-59516965 | Msa1113300:CDS | 40.0% | |
| AAGCTCACCCATACTAAACA+TGG | - | chr7_3:59517009-59517028 | None:intergenic | 40.0% | |
| CAAGAGAAAGTGATTTCGTG+TGG | + | chr7_3:59517163-59517182 | Msa1113300:CDS | 40.0% | |
| GCTATTAGTGCCTTCATTGT+TGG | + | chr7_3:59517244-59517263 | Msa1113300:CDS | 40.0% | |
| !!! | CGAGCTTCACAACTAGTTTT+TGG | - | chr7_3:59517503-59517522 | None:intergenic | 40.0% |
| TGAATGGAGTTACTGATGCT+AGG | - | chr7_3:59517622-59517641 | None:intergenic | 40.0% | |
| GCATAGTAGGCAACTAAGAT+CGG | - | chr7_3:59518129-59518148 | None:intergenic | 40.0% | |
| CCATGATGCATTTGGATTAC+TGG | - | chr7_3:59518260-59518279 | None:intergenic | 40.0% | |
| CCAGTAATCCAAATGCATCA+TGG | + | chr7_3:59518257-59518276 | Msa1113300:three_prime_UTR | 40.0% | |
| TCAGAACCAAAACATCGATG+TGG | - | chr7_3:59518373-59518392 | None:intergenic | 40.0% | |
| ! | TAGGCTATGGTTCTGTAAGG+TGG | + | chr7_3:59515863-59515882 | Msa1113300:CDS | 45.0% |
| CTTAAAAGGATCGATGTGCG+CGG | - | chr7_3:59515974-59515993 | None:intergenic | 45.0% | |
| GCTACTACACTTAGCCCAAA+GGG | - | chr7_3:59516058-59516077 | None:intergenic | 45.0% | |
| TGCTACTACACTTAGCCCAA+AGG | - | chr7_3:59516059-59516078 | None:intergenic | 45.0% | |
| GGATCTTGTGGTTCAAGCTT+CGG | + | chr7_3:59516185-59516204 | Msa1113300:CDS | 45.0% | |
| !! | ACTAGCCTTCGGTTTCAAAG+TGG | - | chr7_3:59516289-59516308 | None:intergenic | 45.0% |
| TCCAATTGATGAAGCGTGTG+TGG | + | chr7_3:59516400-59516419 | Msa1113300:CDS | 45.0% | |
| TAGGTGACAATAGTCGTCCA+CGG | + | chr7_3:59516738-59516757 | Msa1113300:intron | 45.0% | |
| GGAATTGCCAAGTATGGTAG+AGG | + | chr7_3:59516944-59516963 | Msa1113300:CDS | 45.0% | |
| ATAGACCCCTCTACCATACT+TGG | - | chr7_3:59516954-59516973 | None:intergenic | 45.0% | |
| GATCATGTCAAAGGCTGGAA+CGG | + | chr7_3:59516977-59516996 | Msa1113300:CDS | 45.0% | |
| ATCATGTCAAAGGCTGGAAC+GGG | + | chr7_3:59516978-59516997 | Msa1113300:CDS | 45.0% | |
| GGCACTGCCATGTTTAGTAT+GGG | + | chr7_3:59516999-59517018 | Msa1113300:CDS | 45.0% | |
| GGACCAAGTCTGACTGTATT+TGG | + | chr7_3:59517184-59517203 | Msa1113300:CDS | 45.0% | |
| ACCACGCAATCCAACAATGA+AGG | - | chr7_3:59517257-59517276 | None:intergenic | 45.0% | |
| CAGAACAGTTTGCGCATTTG+TGG | - | chr7_3:59517705-59517724 | None:intergenic | 45.0% | |
| CACAAATGCGCAAACTGTTC+TGG | + | chr7_3:59517703-59517722 | Msa1113300:intron | 45.0% | |
| AGAATACGAACTACATGCCG+AGG | + | chr7_3:59517860-59517879 | Msa1113300:CDS | 45.0% | |
| TTACGCAGTGCTAAGAACCT+CGG | - | chr7_3:59517880-59517899 | None:intergenic | 45.0% | |
| !! | TATATATATAATATATATGT+AGG | + | chr7_3:59516913-59516932 | Msa1113300:intron | 5.0% |
| !!! | TATATTAATTTTCAAATTTT+TGG | + | chr7_3:59518066-59518085 | Msa1113300:intron | 5.0% |
| ! | GCTATGGTTCTGTAAGGTGG+TGG | + | chr7_3:59515866-59515885 | Msa1113300:CDS | 50.0% |
| TTGTTGCGGTGATTGCCCTT+TGG | + | chr7_3:59516040-59516059 | Msa1113300:CDS | 50.0% | |
| TGTTGCGGTGATTGCCCTTT+GGG | + | chr7_3:59516041-59516060 | Msa1113300:CDS | 50.0% | |
| ACGCCCAAAGGTCCATACAT+AGG | - | chr7_3:59516165-59516184 | None:intergenic | 50.0% | |
| TATGTATGGACCTTTGGGCG+TGG | + | chr7_3:59516164-59516183 | Msa1113300:CDS | 50.0% | |
| GCCACACACGCTTCATCAAT+TGG | - | chr7_3:59516404-59516423 | None:intergenic | 50.0% | |
| ! | GGGCACTGCCATGTTTAGTA+TGG | + | chr7_3:59516998-59517017 | Msa1113300:CDS | 50.0% |
| GCACTAATAGCCATTGCTGC+TGG | - | chr7_3:59517235-59517254 | None:intergenic | 50.0% | |
| GCCTTCATTGTTGGATTGCG+TGG | + | chr7_3:59517253-59517272 | Msa1113300:CDS | 50.0% | |
| GTGAACTCGAAGGCGAAGAG+TGG | - | chr7_3:59515952-59515971 | None:intergenic | 55.0% | |
| ACCTTTGGGCGTGGATCTTG+TGG | + | chr7_3:59516173-59516192 | Msa1113300:CDS | 55.0% | |
| ACCACAAGATCCACGCCCAA+AGG | - | chr7_3:59516177-59516196 | None:intergenic | 55.0% | |
| CATTGCTGGACCAGCAGCAA+TGG | + | chr7_3:59517222-59517241 | Msa1113300:CDS | 55.0% | |
| GGTCTCTGCAGGGTGATCTT+TGG | + | chr7_3:59518087-59518106 | Msa1113300:intron | 55.0% | |
| GATGTGCGCGGTGAACTCGA+AGG | - | chr7_3:59515962-59515981 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 59515701 | 59518446 | 59515701 | ID=Msa1113300;Name=Msa1113300 |
| chr7_3 | mRNA | 59515701 | 59518446 | 59515701 | ID=Msa1113300-mRNA-1;Parent=Msa1113300;Name=Msa1113300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=95|1|1|1|1|1|5|276|363 |
| chr7_3 | exon | 59515701 | 59516493 | 59515701 | ID=Msa1113300-mRNA-1:exon:13235;Parent=Msa1113300-mRNA-1 |
| chr7_3 | exon | 59516935 | 59517020 | 59516935 | ID=Msa1113300-mRNA-1:exon:13236;Parent=Msa1113300-mRNA-1 |
| chr7_3 | exon | 59517146 | 59517303 | 59517146 | ID=Msa1113300-mRNA-1:exon:13237;Parent=Msa1113300-mRNA-1 |
| chr7_3 | exon | 59517819 | 59517895 | 59517819 | ID=Msa1113300-mRNA-1:exon:13238;Parent=Msa1113300-mRNA-1 |
| chr7_3 | exon | 59518098 | 59518446 | 59518098 | ID=Msa1113300-mRNA-1:exon:13239;Parent=Msa1113300-mRNA-1 |
| chr7_3 | five_prime_UTR | 59515701 | 59515795 | 59515701 | ID=Msa1113300-mRNA-1:five_prime_utr;Parent=Msa1113300-mRNA-1 |
| chr7_3 | CDS | 59515796 | 59516493 | 59515796 | ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1 |
| chr7_3 | CDS | 59516935 | 59517020 | 59516935 | ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1 |
| chr7_3 | CDS | 59517146 | 59517303 | 59517146 | ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1 |
| chr7_3 | CDS | 59517819 | 59517895 | 59517819 | ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1 |
| chr7_3 | CDS | 59518098 | 59518170 | 59518098 | ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1 |
| chr7_3 | three_prime_UTR | 59518171 | 59518446 | 59518171 | ID=Msa1113300-mRNA-1:three_prime_utr;Parent=Msa1113300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
