AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113300 MtrunA17_Chr7g0249141 98.898 363 4 0 1 363 1 363 0.0 726
Msa1113300 MtrunA17_Chr7g0216571 39.554 359 212 2 1 359 12 365 5.17e-94 285
Msa1113300 MtrunA17_Chr6g0452821 38.781 361 218 2 1 360 1 359 7.14e-90 274
Msa1113300 MtrunA17_Chr7g0255941 45.813 203 87 3 162 359 405 589 4.83e-54 187
Msa1113300 MtrunA17_Chr7g0255941 46.193 197 94 2 1 188 1 194 6.42e-50 176
Msa1113300 MtrunA17_Chr4g0071571 45.408 196 95 2 169 359 435 623 2.04e-52 183
Msa1113300 MtrunA17_Chr4g0071571 49.359 156 78 1 1 155 1 156 6.63e-48 171
Msa1113300 MtrunA17_Chr4g0044181 49.412 170 81 1 195 359 488 657 4.95e-52 183
Msa1113300 MtrunA17_Chr4g0044181 51.613 155 75 0 1 155 1 155 2.44e-48 172
Msa1113300 MtrunA17_Chr1g0160461 48.045 179 87 2 187 359 441 619 1.78e-51 181
Msa1113300 MtrunA17_Chr1g0160461 51.613 155 75 0 1 155 1 155 1.99e-47 170
Msa1113300 MtrunA17_Chr4g0071551 41.919 198 102 3 1 188 1 195 3.87e-51 169
Msa1113300 MtrunA17_Chr6g0478431 42.381 210 112 2 159 359 393 602 5.06e-51 179
Msa1113300 MtrunA17_Chr6g0478431 52.903 155 73 0 1 155 1 155 1.03e-49 176
Msa1113300 MtrunA17_Chr8g0393111 50.000 156 77 1 1 155 1 156 4.03e-45 162
Msa1113300 MtrunA17_Chr8g0393111 40.541 185 81 3 175 331 334 517 4.62e-38 143
Msa1113300 MtrunA17_Chr1g0159341 48.235 170 83 1 195 359 356 525 1.96e-44 160
Msa1113300 MtrunA17_Chr1g0159341 47.742 155 81 0 1 155 1 155 5.74e-42 153
Msa1113300 MtrunA17_Chr2g0298971 45.806 155 84 0 1 155 1 155 1.20e-42 155
Msa1113300 MtrunA17_Chr2g0298971 38.614 202 80 5 179 340 320 517 1.18e-34 133
Msa1113300 MtrunA17_Chr4g0071561 43.860 171 90 2 169 337 150 316 5.04e-39 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113300 AT5G16530.1 69.146 363 100 2 1 363 1 351 0.0 510
Msa1113300 AT5G16530.2 68.235 340 96 2 1 340 1 328 2.83e-167 470
Msa1113300 AT5G15100.1 36.729 373 218 4 1 361 1 367 6.11e-84 259
Msa1113300 AT5G57090.2 47.027 185 92 2 180 359 362 545 6.62e-55 189
Msa1113300 AT5G57090.2 57.407 54 23 0 102 155 2 55 2.91e-11 65.1
Msa1113300 AT5G57090.1 47.027 185 92 2 180 359 462 645 3.96e-54 189
Msa1113300 AT5G57090.1 44.670 197 97 2 1 188 1 194 3.67e-49 175
Msa1113300 AT2G01420.2 50.000 168 79 1 197 359 447 614 1.05e-52 184
Msa1113300 AT2G01420.2 53.548 155 72 0 1 155 1 155 1.05e-50 179
Msa1113300 AT2G01420.1 50.000 168 79 1 197 359 443 610 1.25e-52 184
Msa1113300 AT2G01420.1 53.548 155 72 0 1 155 1 155 1.18e-50 179
Msa1113300 AT2G01420.3 53.548 155 72 0 1 155 1 155 3.74e-51 178
Msa1113300 AT2G01420.3 42.254 71 36 1 197 262 447 517 2.56e-11 65.5
Msa1113300 AT1G73590.1 45.024 211 97 4 168 359 410 620 2.20e-50 178
Msa1113300 AT1G73590.1 52.258 155 74 0 1 155 1 155 1.48e-48 173
Msa1113300 AT1G70940.1 53.548 155 72 0 1 155 1 155 6.31e-50 177
Msa1113300 AT1G70940.1 50.299 167 78 1 198 359 472 638 6.94e-49 174
Msa1113300 AT1G23080.2 52.903 155 73 0 1 155 1 155 1.27e-49 174
Msa1113300 AT1G23080.2 37.634 93 51 2 175 262 426 516 2.37e-11 65.5
Msa1113300 AT1G23080.3 46.842 190 94 2 175 359 426 613 1.38e-49 176
Msa1113300 AT1G23080.3 52.903 155 73 0 1 155 1 155 3.71e-49 175
Msa1113300 AT1G23080.4 46.842 190 94 2 175 359 426 613 1.38e-49 176
Msa1113300 AT1G23080.4 52.903 155 73 0 1 155 1 155 3.71e-49 175
Msa1113300 AT1G23080.1 46.842 190 94 2 175 359 430 617 1.66e-49 176
Msa1113300 AT1G23080.1 52.903 155 73 0 1 155 1 155 3.64e-49 175
Msa1113300 AT1G77110.1 46.237 186 93 2 179 359 385 568 7.92e-48 170
Msa1113300 AT1G77110.1 47.097 155 82 0 1 155 1 155 4.88e-40 149
Msa1113300 AT1G77110.2 47.097 155 82 0 1 155 1 155 4.26e-40 149
Msa1113300 AT1G77110.2 43.976 166 86 2 179 339 385 548 1.34e-38 145

Find 94 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATGCATTTGGATTAC+TGG 0.173929 7_3:-59518257 None:intergenic
ATGACACAACCATAGGAATT+TGG 0.178760 7_3:-59516441 None:intergenic
ATATATATGTAGGTGGAATT+TGG 0.227666 7_3:+59516923 Msa1113300:intron
AATAAGAAGTTCATCTTAAA+AGG 0.233267 7_3:-59515985 None:intergenic
AAGATGAACTTCTTATTTAT+AGG 0.235002 7_3:+59515991 Msa1113300:CDS
TAACCGTTAAGTTTCGAAAA+TGG 0.242326 7_3:-59518183 None:intergenic
GGTCTCTGCAGGGTGATCTT+TGG 0.249576 7_3:+59518087 Msa1113300:intron
CATGGGCTTTCATATCTAAT+AGG 0.262952 7_3:+59516472 Msa1113300:CDS
TTTACGAATTGCCATCATTC+AGG 0.296119 7_3:+59517282 Msa1113300:CDS
GGGCACTGCCATGTTTAGTA+TGG 0.302745 7_3:+59516998 Msa1113300:CDS
CGGTTGTTCAAGCTATTATA+TGG 0.310821 7_3:+59516205 Msa1113300:CDS
TTGAAACCACATCGATGTTT+TGG 0.313090 7_3:+59518364 Msa1113300:three_prime_UTR
CTAACAAATTCTCTTGTTGT+TGG 0.319301 7_3:+59516123 Msa1113300:CDS
AATTCCTATGGTTGTGTCAT+TGG 0.321480 7_3:+59516444 Msa1113300:CDS
AGTTGCCTACTATGCAATAT+TGG 0.329841 7_3:+59518134 Msa1113300:CDS
GTAGCAAAGTAAGTTATTCT+TGG 0.331589 7_3:+59516073 Msa1113300:CDS
GCATATATCCATGATGCATT+TGG 0.333965 7_3:-59518265 None:intergenic
TGTTGCGGTGATTGCCCTTT+GGG 0.341560 7_3:+59516041 Msa1113300:CDS
CACTTTGCTTCTATTTGTGT+TGG 0.343196 7_3:+59516230 Msa1113300:CDS
TGACACAACCATAGGAATTT+GGG 0.351513 7_3:-59516440 None:intergenic
ATCAATTTGAAAAGAAACTT+TGG 0.354047 7_3:-59518223 None:intergenic
ATATGTGTTGTGCAAGAAAT+TGG 0.354441 7_3:+59515723 Msa1113300:five_prime_UTR
GTTGTGTCATTGGCATTTCA+TGG 0.356642 7_3:+59516454 Msa1113300:CDS
GGACCAAGTCTGACTGTATT+TGG 0.359187 7_3:+59517184 Msa1113300:CDS
TATAATTTCTGTTAGGTAGT+TGG 0.369866 7_3:+59518310 Msa1113300:three_prime_UTR
GCCACACACGCTTCATCAAT+TGG 0.381628 7_3:-59516401 None:intergenic
GAATTTGGAATTGCCAAGTA+TGG 0.381720 7_3:+59516938 Msa1113300:CDS
GGATCTTGTGGTTCAAGCTT+CGG 0.388473 7_3:+59516185 Msa1113300:CDS
GAAACCTATGTATGGACCTT+TGG 0.390203 7_3:+59516158 Msa1113300:CDS
GCTATTAGTGCCTTCATTGT+TGG 0.394401 7_3:+59517244 Msa1113300:CDS
GTGTTGGAGTTTAGAAGAAC+GGG 0.402783 7_3:+59516246 Msa1113300:CDS
AAGTCTGACTGTATTTGGTT+TGG 0.414306 7_3:+59517189 Msa1113300:CDS
AAATTCCAATATTGCATAGT+AGG 0.429210 7_3:-59518139 None:intergenic
AAACCTATGTATGGACCTTT+GGG 0.431609 7_3:+59516159 Msa1113300:CDS
TTGTTGCGGTGATTGCCCTT+TGG 0.434076 7_3:+59516040 Msa1113300:CDS
CGCTTCATCAATTGGAAGAA+AGG 0.444864 7_3:-59516393 None:intergenic
ATCATGTCAAAGGCTGGAAC+GGG 0.450270 7_3:+59516978 Msa1113300:CDS
ACTTAACGGTTAAGGTTAAG+TGG 0.451881 7_3:+59518194 Msa1113300:three_prime_UTR
TTACTAATGCTACTAGCCTT+CGG 0.463777 7_3:-59516297 None:intergenic
ATGAAGGATGTTATGGATTG+TGG 0.476975 7_3:-59517828 None:intergenic
CCAATGGTGAAACCTATGTA+TGG 0.489658 7_3:+59516150 Msa1113300:CDS
GTTTAGAAGAACGGGAATAG+AGG 0.490862 7_3:+59516254 Msa1113300:CDS
ATAGCAAACCCAAATTCCTA+TGG 0.491172 7_3:+59516432 Msa1113300:CDS
TTTGCACTAATATTAGGCTA+TGG 0.493851 7_3:+59515850 Msa1113300:CDS
AAAATAAATAACCTGAATGA+TGG 0.498324 7_3:-59517293 None:intergenic
TGTGTTGGAGTTTAGAAGAA+CGG 0.506228 7_3:+59516245 Msa1113300:CDS
CCAGTAATCCAAATGCATCA+TGG 0.515621 7_3:+59518257 Msa1113300:three_prime_UTR
GGAATTGCCAAGTATGGTAG+AGG 0.516261 7_3:+59516944 Msa1113300:CDS
TTGTGTCATTGGCATTTCAT+GGG 0.516530 7_3:+59516455 Msa1113300:CDS
ATAGACCCCTCTACCATACT+TGG 0.519190 7_3:-59516951 None:intergenic
GCTACTACACTTAGCCCAAA+GGG 0.523271 7_3:-59516055 None:intergenic
ATATTGATCATGTCAAAGGC+TGG 0.526511 7_3:+59516972 Msa1113300:CDS
GATCATGTCAAAGGCTGGAA+CGG 0.541123 7_3:+59516977 Msa1113300:CDS
ACCTTTGGGCGTGGATCTTG+TGG 0.542649 7_3:+59516173 Msa1113300:CDS
ATCAAAGTTAATCATTGTTG+CGG 0.547075 7_3:+59516026 Msa1113300:CDS
GCACTAATAGCCATTGCTGC+TGG 0.549589 7_3:-59517232 None:intergenic
CCATACATAGGTTTCACCAT+TGG 0.550223 7_3:-59516150 None:intergenic
CATTGCTGGACCAGCAGCAA+TGG 0.551223 7_3:+59517222 Msa1113300:CDS
GCATAGTAGGCAACTAAGAT+CGG 0.552417 7_3:-59518126 None:intergenic
GCCTTCATTGTTGGATTGCG+TGG 0.554074 7_3:+59517253 Msa1113300:CDS
TATTAGGCTATGGTTCTGTA+AGG 0.555934 7_3:+59515860 Msa1113300:CDS
ACCACGCAATCCAACAATGA+AGG 0.564698 7_3:-59517254 None:intergenic
TATGTATGGACCTTTGGGCG+TGG 0.570033 7_3:+59516164 Msa1113300:CDS
GTCTATATTGATCATGTCAA+AGG 0.570735 7_3:+59516968 Msa1113300:CDS
TTTAGAAGAACGGGAATAGA+GGG 0.575235 7_3:+59516255 Msa1113300:CDS
CTTAACGGTTAAGGTTAAGT+GGG 0.576600 7_3:+59518195 Msa1113300:three_prime_UTR
TGCTACTACACTTAGCCCAA+AGG 0.578291 7_3:-59516056 None:intergenic
GCTATGGTTCTGTAAGGTGG+TGG 0.583525 7_3:+59515866 Msa1113300:CDS
AGGTGAAGAAAGTAAAGATG+TGG 0.584615 7_3:+59516332 Msa1113300:CDS
GGCACTGCCATGTTTAGTAT+GGG 0.585108 7_3:+59516999 Msa1113300:CDS
GAATTGCCAAGTATGGTAGA+GGG 0.589216 7_3:+59516945 Msa1113300:CDS
TGTGTTGTGCAAGAAATTGG+AGG 0.589694 7_3:+59515726 Msa1113300:five_prime_UTR
GTGAACTCGAAGGCGAAGAG+TGG 0.590300 7_3:-59515949 None:intergenic
TCCAATTGATGAAGCGTGTG+TGG 0.597137 7_3:+59516400 Msa1113300:CDS
ACGCCCAAAGGTCCATACAT+AGG 0.598945 7_3:-59516162 None:intergenic
CAAGAGAAAGTGATTTCGTG+TGG 0.600700 7_3:+59517163 Msa1113300:CDS
AATATTAGTGCAAAATAGAG+TGG 0.603576 7_3:-59515841 None:intergenic
TCTTGTTGTTGGAATACCAA+TGG 0.606269 7_3:+59516134 Msa1113300:CDS
ATTAGTAATGTGACATGTGA+AGG 0.611957 7_3:+59516312 Msa1113300:CDS
ACCACAAGATCCACGCCCAA+AGG 0.613248 7_3:-59516174 None:intergenic
TAGGCTATGGTTCTGTAAGG+TGG 0.613388 7_3:+59515863 Msa1113300:CDS
GTACAAAGTTATTGTAGCAG+TGG 0.621495 7_3:+59515816 Msa1113300:CDS
AAACCAAATACAGTCAGACT+TGG 0.623723 7_3:-59517187 None:intergenic
ACTAGCCTTCGGTTTCAAAG+TGG 0.629563 7_3:-59516286 None:intergenic
AAGCTCACCCATACTAAACA+TGG 0.631541 7_3:-59517006 None:intergenic
TATAACCACTTTGAAACCGA+AGG 0.633348 7_3:+59516281 Msa1113300:CDS
AGAATACGAACTACATGCCG+AGG 0.641366 7_3:+59517860 Msa1113300:CDS
GAACTTCTTATTTATAGGCG+CGG 0.645236 7_3:+59515996 Msa1113300:CDS
AATGCCAATGACACAACCAT+AGG 0.648775 7_3:-59516448 None:intergenic
TTACGCAGTGCTAAGAACCT+CGG 0.657922 7_3:-59517877 None:intergenic
AATTGCCAAGTATGGTAGAG+GGG 0.692420 7_3:+59516946 Msa1113300:CDS
GATGTGCGCGGTGAACTCGA+AGG 0.703238 7_3:-59515959 None:intergenic
TCAGAACCAAAACATCGATG+TGG 0.711482 7_3:-59518370 None:intergenic
CTTAAAAGGATCGATGTGCG+CGG 0.711568 7_3:-59515971 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTATTTTAAAA+GGG - chr7_3:59516661-59516680 None:intergenic 0.0%
!!! ATATTATAATTTATTTTAAA+AGG - chr7_3:59516662-59516681 None:intergenic 0.0%
!! ATAAAAAAAAATTCCTATAT+CGG + chr7_3:59516594-59516613 Msa1113300:intron 10.0%
!! GAAATTATAAATTGATTATA+AGG - chr7_3:59516769-59516788 None:intergenic 10.0%
!! TAAAAAATAATAATTAGACA+AGG - chr7_3:59517785-59517804 None:intergenic 10.0%
!! AGAAAACTAAAAAAAATGAT+TGG + chr7_3:59515781-59515800 Msa1113300:exon 15.0%
!! GAAAACTAAAAAAAATGATT+GGG + chr7_3:59515782-59515801 Msa1113300:exon 15.0%
!! TAAAAAAAAATTCCTATATC+GGG + chr7_3:59516595-59516614 Msa1113300:intron 15.0%
!!! AATTTACAATGAAGAATTTT+AGG + chr7_3:59516719-59516738 Msa1113300:intron 15.0%
!! ATATATAATATATATGTAGG+TGG + chr7_3:59516916-59516935 Msa1113300:intron 15.0%
!!! ATTTTTTATTTATTTGATGC+AGG + chr7_3:59517797-59517816 Msa1113300:intron 15.0%
!!! TTTTGATTATAATTTCTGTT+AGG + chr7_3:59518303-59518322 Msa1113300:three_prime_UTR 15.0%
!! AATAAGAAGTTCATCTTAAA+AGG - chr7_3:59515988-59516007 None:intergenic 20.0%
!!! AAGATGAACTTCTTATTTAT+AGG + chr7_3:59515991-59516010 Msa1113300:CDS 20.0%
!! TATTTAATTAGACATGCAAA+TGG - chr7_3:59516524-59516543 None:intergenic 20.0%
!!! CTAATCAAGCTATTTATTTT+TGG - chr7_3:59516566-59516585 None:intergenic 20.0%
!! AAATTTGAAGAGATAAATGT+GGG - chr7_3:59516867-59516886 None:intergenic 20.0%
!! AAAATTTGAAGAGATAAATG+TGG - chr7_3:59516868-59516887 None:intergenic 20.0%
!! TATTAGCATTAAACATAGTT+AGG + chr7_3:59517065-59517084 Msa1113300:intron 20.0%
!! ATTAGCATTAAACATAGTTA+GGG + chr7_3:59517066-59517085 Msa1113300:intron 20.0%
!! AAAATAAATAACCTGAATGA+TGG - chr7_3:59517296-59517315 None:intergenic 20.0%
!! CACACACTAAAAAAAAAAAA+AGG + chr7_3:59517348-59517367 Msa1113300:intron 20.0%
!! TCTTTGCTAAAAAAAAATAG+AGG - chr7_3:59517459-59517478 None:intergenic 20.0%
!!! ATGTAGTAGATTTGTTAAAA+TGG + chr7_3:59517643-59517662 Msa1113300:intron 20.0%
!!! AATGGATTAGCTAATATTTA+AGG + chr7_3:59517661-59517680 Msa1113300:intron 20.0%
!! AAAACACAAAAAATGTTGTT+TGG - chr7_3:59517738-59517757 None:intergenic 20.0%
!!! TTTTGTGTTTTTAAAGACTT+CGG + chr7_3:59517747-59517766 Msa1113300:intron 20.0%
!! ATCAATTTGAAAAGAAACTT+TGG - chr7_3:59518226-59518245 None:intergenic 20.0%
!!! AAAGTTTTGTTACATTTAGT+GGG - chr7_3:59518346-59518365 None:intergenic 20.0%
!! TAGTTTTCTTTTCTTTTGTG+TGG - chr7_3:59515770-59515789 None:intergenic 25.0%
! AACTAAAAAAAATGATTGGG+TGG + chr7_3:59515785-59515804 Msa1113300:exon 25.0%
! ACTAAAAAAAATGATTGGGT+GGG + chr7_3:59515786-59515805 Msa1113300:exon 25.0%
! AATATTAGTGCAAAATAGAG+TGG - chr7_3:59515844-59515863 None:intergenic 25.0%
!! CTCTATTTTGCACTAATATT+AGG + chr7_3:59515844-59515863 Msa1113300:CDS 25.0%
! ATCAAAGTTAATCATTGTTG+CGG + chr7_3:59516026-59516045 Msa1113300:CDS 25.0%
!!! TCTTGTCTTAAAGTTGTTTT+AGG - chr7_3:59516638-59516657 None:intergenic 25.0%
! ATATATATGTAGGTGGAATT+TGG + chr7_3:59516923-59516942 Msa1113300:intron 25.0%
! TAACCTCTAAATATTACAAG+AGG + chr7_3:59517371-59517390 Msa1113300:intron 25.0%
!! ATTTTTGTCTATGCTATAAG+TGG - chr7_3:59517436-59517455 None:intergenic 25.0%
! ACAAATCTACTACATATGAA+TGG - chr7_3:59517638-59517657 None:intergenic 25.0%
! GTATTCTTTAGCAAAAATGA+AGG - chr7_3:59517847-59517866 None:intergenic 25.0%
! ATTTCTTCAATGTTCAAGAA+TGG + chr7_3:59517907-59517926 Msa1113300:intron 25.0%
! AAATTCCAATATTGCATAGT+AGG - chr7_3:59518142-59518161 None:intergenic 25.0%
!! ATACCATTTTCGAAACTTAA+CGG + chr7_3:59518180-59518199 Msa1113300:three_prime_UTR 25.0%
! TATAATTTCTGTTAGGTAGT+TGG + chr7_3:59518310-59518329 Msa1113300:three_prime_UTR 25.0%
!!! CAAAGTTTTGTTACATTTAG+TGG - chr7_3:59518347-59518366 None:intergenic 25.0%
ATATGTGTTGTGCAAGAAAT+TGG + chr7_3:59515723-59515742 Msa1113300:five_prime_UTR 30.0%
TTTGCACTAATATTAGGCTA+TGG + chr7_3:59515850-59515869 Msa1113300:CDS 30.0%
GTAGCAAAGTAAGTTATTCT+TGG + chr7_3:59516073-59516092 Msa1113300:CDS 30.0%
! CTAACAAATTCTCTTGTTGT+TGG + chr7_3:59516123-59516142 Msa1113300:CDS 30.0%
ATTAGTAATGTGACATGTGA+AGG + chr7_3:59516312-59516331 Msa1113300:CDS 30.0%
TTGATTATAAGGAAATACCG+TGG - chr7_3:59516758-59516777 None:intergenic 30.0%
GTCTATATTGATCATGTCAA+AGG + chr7_3:59516968-59516987 Msa1113300:CDS 30.0%
!! TATATGTGATGTGTTGATTC+AGG + chr7_3:59517124-59517143 Msa1113300:intron 30.0%
!!! TGTTGATTCAGGTATTTTCA+TGG + chr7_3:59517135-59517154 Msa1113300:intron 30.0%
!!! TTGGTTTTAAAGTTCATTGC+TGG + chr7_3:59517208-59517227 Msa1113300:CDS 30.0%
TAGCCTCTTGTAATATTTAG+AGG - chr7_3:59517377-59517396 None:intergenic 30.0%
!!! GTTTTTGGCAAAAACAAAAG+AGG - chr7_3:59517488-59517507 None:intergenic 30.0%
! AATCATACGAATGATTTGGA+TGG - chr7_3:59517554-59517573 None:intergenic 30.0%
GTTGAATCATACGAATGATT+TGG - chr7_3:59517558-59517577 None:intergenic 30.0%
AGCAAAAATGAAGGATGTTA+TGG - chr7_3:59517838-59517857 None:intergenic 30.0%
TAACCGTTAAGTTTCGAAAA+TGG - chr7_3:59518186-59518205 None:intergenic 30.0%
! TTTTCGAAACTTAACGGTTA+AGG + chr7_3:59518186-59518205 Msa1113300:three_prime_UTR 30.0%
GTACAAAGTTATTGTAGCAG+TGG + chr7_3:59515816-59515835 Msa1113300:CDS 35.0%
! TATTAGGCTATGGTTCTGTA+AGG + chr7_3:59515860-59515879 Msa1113300:CDS 35.0%
! GAACTTCTTATTTATAGGCG+CGG + chr7_3:59515996-59516015 Msa1113300:CDS 35.0%
!! TCTTGTTGTTGGAATACCAA+TGG + chr7_3:59516134-59516153 Msa1113300:CDS 35.0%
AAACCTATGTATGGACCTTT+GGG + chr7_3:59516159-59516178 Msa1113300:CDS 35.0%
CGGTTGTTCAAGCTATTATA+TGG + chr7_3:59516205-59516224 Msa1113300:CDS 35.0%
CACTTTGCTTCTATTTGTGT+TGG + chr7_3:59516230-59516249 Msa1113300:CDS 35.0%
TGTGTTGGAGTTTAGAAGAA+CGG + chr7_3:59516245-59516264 Msa1113300:CDS 35.0%
TTTAGAAGAACGGGAATAGA+GGG + chr7_3:59516255-59516274 Msa1113300:CDS 35.0%
!! TATAACCACTTTGAAACCGA+AGG + chr7_3:59516281-59516300 Msa1113300:CDS 35.0%
!! TTACTAATGCTACTAGCCTT+CGG - chr7_3:59516300-59516319 None:intergenic 35.0%
AGGTGAAGAAAGTAAAGATG+TGG + chr7_3:59516332-59516351 Msa1113300:CDS 35.0%
ATAGCAAACCCAAATTCCTA+TGG + chr7_3:59516432-59516451 Msa1113300:CDS 35.0%
TGACACAACCATAGGAATTT+GGG - chr7_3:59516443-59516462 None:intergenic 35.0%
ATGACACAACCATAGGAATT+TGG - chr7_3:59516444-59516463 None:intergenic 35.0%
AATTCCTATGGTTGTGTCAT+TGG + chr7_3:59516444-59516463 Msa1113300:CDS 35.0%
! TTGTGTCATTGGCATTTCAT+GGG + chr7_3:59516455-59516474 Msa1113300:CDS 35.0%
CATGGGCTTTCATATCTAAT+AGG + chr7_3:59516472-59516491 Msa1113300:CDS 35.0%
ATAGATACTGAACCCGATAT+AGG - chr7_3:59516610-59516629 None:intergenic 35.0%
! GAATTTGGAATTGCCAAGTA+TGG + chr7_3:59516938-59516957 Msa1113300:CDS 35.0%
ATATTGATCATGTCAAAGGC+TGG + chr7_3:59516972-59516991 Msa1113300:CDS 35.0%
AAACCAAATACAGTCAGACT+TGG - chr7_3:59517190-59517209 None:intergenic 35.0%
AAGTCTGACTGTATTTGGTT+TGG + chr7_3:59517189-59517208 Msa1113300:CDS 35.0%
TTTACGAATTGCCATCATTC+AGG + chr7_3:59517282-59517301 Msa1113300:CDS 35.0%
! TACGAATGATTTGGATGGTA+CGG - chr7_3:59517549-59517568 None:intergenic 35.0%
! ATGAAGGATGTTATGGATTG+TGG - chr7_3:59517831-59517850 None:intergenic 35.0%
!!! TTCAAATTTTTGGTCTCTGC+AGG + chr7_3:59518076-59518095 Msa1113300:intron 35.0%
!!! TCAAATTTTTGGTCTCTGCA+GGG + chr7_3:59518077-59518096 Msa1113300:intron 35.0%
AGTTGCCTACTATGCAATAT+TGG + chr7_3:59518134-59518153 Msa1113300:CDS 35.0%
ACTTAACGGTTAAGGTTAAG+TGG + chr7_3:59518194-59518213 Msa1113300:three_prime_UTR 35.0%
CTTAACGGTTAAGGTTAAGT+GGG + chr7_3:59518195-59518214 Msa1113300:three_prime_UTR 35.0%
GCATATATCCATGATGCATT+TGG - chr7_3:59518268-59518287 None:intergenic 35.0%
! TTGAAACCACATCGATGTTT+TGG + chr7_3:59518364-59518383 Msa1113300:three_prime_UTR 35.0%
TGTGTTGTGCAAGAAATTGG+AGG + chr7_3:59515726-59515745 Msa1113300:five_prime_UTR 40.0%
CCATACATAGGTTTCACCAT+TGG - chr7_3:59516153-59516172 None:intergenic 40.0%
CCAATGGTGAAACCTATGTA+TGG + chr7_3:59516150-59516169 Msa1113300:CDS 40.0%
GAAACCTATGTATGGACCTT+TGG + chr7_3:59516158-59516177 Msa1113300:CDS 40.0%
GTGTTGGAGTTTAGAAGAAC+GGG + chr7_3:59516246-59516265 Msa1113300:CDS 40.0%
GTTTAGAAGAACGGGAATAG+AGG + chr7_3:59516254-59516273 Msa1113300:CDS 40.0%
CGCTTCATCAATTGGAAGAA+AGG - chr7_3:59516396-59516415 None:intergenic 40.0%
AATGCCAATGACACAACCAT+AGG - chr7_3:59516451-59516470 None:intergenic 40.0%
! GTTGTGTCATTGGCATTTCA+TGG + chr7_3:59516454-59516473 Msa1113300:CDS 40.0%
GAATTGCCAAGTATGGTAGA+GGG + chr7_3:59516945-59516964 Msa1113300:CDS 40.0%
AATTGCCAAGTATGGTAGAG+GGG + chr7_3:59516946-59516965 Msa1113300:CDS 40.0%
AAGCTCACCCATACTAAACA+TGG - chr7_3:59517009-59517028 None:intergenic 40.0%
CAAGAGAAAGTGATTTCGTG+TGG + chr7_3:59517163-59517182 Msa1113300:CDS 40.0%
GCTATTAGTGCCTTCATTGT+TGG + chr7_3:59517244-59517263 Msa1113300:CDS 40.0%
!!! CGAGCTTCACAACTAGTTTT+TGG - chr7_3:59517503-59517522 None:intergenic 40.0%
TGAATGGAGTTACTGATGCT+AGG - chr7_3:59517622-59517641 None:intergenic 40.0%
GCATAGTAGGCAACTAAGAT+CGG - chr7_3:59518129-59518148 None:intergenic 40.0%
CCATGATGCATTTGGATTAC+TGG - chr7_3:59518260-59518279 None:intergenic 40.0%
CCAGTAATCCAAATGCATCA+TGG + chr7_3:59518257-59518276 Msa1113300:three_prime_UTR 40.0%
TCAGAACCAAAACATCGATG+TGG - chr7_3:59518373-59518392 None:intergenic 40.0%
! TAGGCTATGGTTCTGTAAGG+TGG + chr7_3:59515863-59515882 Msa1113300:CDS 45.0%
CTTAAAAGGATCGATGTGCG+CGG - chr7_3:59515974-59515993 None:intergenic 45.0%
GCTACTACACTTAGCCCAAA+GGG - chr7_3:59516058-59516077 None:intergenic 45.0%
TGCTACTACACTTAGCCCAA+AGG - chr7_3:59516059-59516078 None:intergenic 45.0%
GGATCTTGTGGTTCAAGCTT+CGG + chr7_3:59516185-59516204 Msa1113300:CDS 45.0%
!! ACTAGCCTTCGGTTTCAAAG+TGG - chr7_3:59516289-59516308 None:intergenic 45.0%
TCCAATTGATGAAGCGTGTG+TGG + chr7_3:59516400-59516419 Msa1113300:CDS 45.0%
TAGGTGACAATAGTCGTCCA+CGG + chr7_3:59516738-59516757 Msa1113300:intron 45.0%
GGAATTGCCAAGTATGGTAG+AGG + chr7_3:59516944-59516963 Msa1113300:CDS 45.0%
ATAGACCCCTCTACCATACT+TGG - chr7_3:59516954-59516973 None:intergenic 45.0%
GATCATGTCAAAGGCTGGAA+CGG + chr7_3:59516977-59516996 Msa1113300:CDS 45.0%
ATCATGTCAAAGGCTGGAAC+GGG + chr7_3:59516978-59516997 Msa1113300:CDS 45.0%
GGCACTGCCATGTTTAGTAT+GGG + chr7_3:59516999-59517018 Msa1113300:CDS 45.0%
GGACCAAGTCTGACTGTATT+TGG + chr7_3:59517184-59517203 Msa1113300:CDS 45.0%
ACCACGCAATCCAACAATGA+AGG - chr7_3:59517257-59517276 None:intergenic 45.0%
CAGAACAGTTTGCGCATTTG+TGG - chr7_3:59517705-59517724 None:intergenic 45.0%
CACAAATGCGCAAACTGTTC+TGG + chr7_3:59517703-59517722 Msa1113300:intron 45.0%
AGAATACGAACTACATGCCG+AGG + chr7_3:59517860-59517879 Msa1113300:CDS 45.0%
TTACGCAGTGCTAAGAACCT+CGG - chr7_3:59517880-59517899 None:intergenic 45.0%
!! TATATATATAATATATATGT+AGG + chr7_3:59516913-59516932 Msa1113300:intron 5.0%
!!! TATATTAATTTTCAAATTTT+TGG + chr7_3:59518066-59518085 Msa1113300:intron 5.0%
! GCTATGGTTCTGTAAGGTGG+TGG + chr7_3:59515866-59515885 Msa1113300:CDS 50.0%
TTGTTGCGGTGATTGCCCTT+TGG + chr7_3:59516040-59516059 Msa1113300:CDS 50.0%
TGTTGCGGTGATTGCCCTTT+GGG + chr7_3:59516041-59516060 Msa1113300:CDS 50.0%
ACGCCCAAAGGTCCATACAT+AGG - chr7_3:59516165-59516184 None:intergenic 50.0%
TATGTATGGACCTTTGGGCG+TGG + chr7_3:59516164-59516183 Msa1113300:CDS 50.0%
GCCACACACGCTTCATCAAT+TGG - chr7_3:59516404-59516423 None:intergenic 50.0%
! GGGCACTGCCATGTTTAGTA+TGG + chr7_3:59516998-59517017 Msa1113300:CDS 50.0%
GCACTAATAGCCATTGCTGC+TGG - chr7_3:59517235-59517254 None:intergenic 50.0%
GCCTTCATTGTTGGATTGCG+TGG + chr7_3:59517253-59517272 Msa1113300:CDS 50.0%
GTGAACTCGAAGGCGAAGAG+TGG - chr7_3:59515952-59515971 None:intergenic 55.0%
ACCTTTGGGCGTGGATCTTG+TGG + chr7_3:59516173-59516192 Msa1113300:CDS 55.0%
ACCACAAGATCCACGCCCAA+AGG - chr7_3:59516177-59516196 None:intergenic 55.0%
CATTGCTGGACCAGCAGCAA+TGG + chr7_3:59517222-59517241 Msa1113300:CDS 55.0%
GGTCTCTGCAGGGTGATCTT+TGG + chr7_3:59518087-59518106 Msa1113300:intron 55.0%
GATGTGCGCGGTGAACTCGA+AGG - chr7_3:59515962-59515981 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59515701 59518446 59515701 ID=Msa1113300;Name=Msa1113300
chr7_3 mRNA 59515701 59518446 59515701 ID=Msa1113300-mRNA-1;Parent=Msa1113300;Name=Msa1113300-mRNA-1;_AED=0.05;_eAED=0.05;_QI=95|1|1|1|1|1|5|276|363
chr7_3 exon 59515701 59516493 59515701 ID=Msa1113300-mRNA-1:exon:13235;Parent=Msa1113300-mRNA-1
chr7_3 exon 59516935 59517020 59516935 ID=Msa1113300-mRNA-1:exon:13236;Parent=Msa1113300-mRNA-1
chr7_3 exon 59517146 59517303 59517146 ID=Msa1113300-mRNA-1:exon:13237;Parent=Msa1113300-mRNA-1
chr7_3 exon 59517819 59517895 59517819 ID=Msa1113300-mRNA-1:exon:13238;Parent=Msa1113300-mRNA-1
chr7_3 exon 59518098 59518446 59518098 ID=Msa1113300-mRNA-1:exon:13239;Parent=Msa1113300-mRNA-1
chr7_3 five_prime_UTR 59515701 59515795 59515701 ID=Msa1113300-mRNA-1:five_prime_utr;Parent=Msa1113300-mRNA-1
chr7_3 CDS 59515796 59516493 59515796 ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1
chr7_3 CDS 59516935 59517020 59516935 ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1
chr7_3 CDS 59517146 59517303 59517146 ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1
chr7_3 CDS 59517819 59517895 59517819 ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1
chr7_3 CDS 59518098 59518170 59518098 ID=Msa1113300-mRNA-1:cds;Parent=Msa1113300-mRNA-1
chr7_3 three_prime_UTR 59518171 59518446 59518171 ID=Msa1113300-mRNA-1:three_prime_utr;Parent=Msa1113300-mRNA-1
Gene Sequence

>Msa1113300

ATGATTGGGTGGGAAGACGTGTACAAAGTTATTGTAGCAGTGGTGCCACTCTATTTTGCACTAATATTAGGCTATGGTTCTGTAAGGTGGTGGAAAATTTTCACAAGAGAACAATGTGATGCAATAAACAAACTAGTTTGTTACTTCACATTGCCACTCTTCGCCTTCGAGTTCACCGCGCACATCGATCCTTTTAAGATGAACTTCTTATTTATAGGCGCGGACACTCTATCAAAGTTAATCATTGTTGCGGTGATTGCCCTTTGGGCTAAGTGTAGTAGCAAAGTAAGTTATTCTTGGTCTATAACAAGTTTCTCTTTGTGTACTCTAACAAATTCTCTTGTTGTTGGAATACCAATGGTGAAACCTATGTATGGACCTTTGGGCGTGGATCTTGTGGTTCAAGCTTCGGTTGTTCAAGCTATTATATGGCTCACTTTGCTTCTATTTGTGTTGGAGTTTAGAAGAACGGGAATAGAGGGCACTATAACCACTTTGAAACCGAAGGCTAGTAGCATTAGTAATGTGACATGTGAAGGTGAAGAAAGTAAAGATGTGGAAGCAAATAACATAGTAGAATATACAAGTAGTAAGCTTCCTTTCTTCCAATTGATGAAGCGTGTGTGGCTCAAATTTATAGCAAACCCAAATTCCTATGGTTGTGTCATTGGCATTTCATGGGCTTTCATATCTAATAGGTGGAATTTGGAATTGCCAAGTATGGTAGAGGGGTCTATATTGATCATGTCAAAGGCTGGAACGGGCACTGCCATGTTTAGTATGGGTATTTTCATGGCACTTCAAGAGAAAGTGATTTCGTGTGGACCAAGTCTGACTGTATTTGGTTTGGTTTTAAAGTTCATTGCTGGACCAGCAGCAATGGCTATTAGTGCCTTCATTGTTGGATTGCGTGGTGACGTTTTACGAATTGCCATCATTCAGGCAGCAGTTCCACAATCCATAACATCCTTCATTTTTGCTAAAGAATACGAACTACATGCCGAGGTTCTTAGCACTGCGGTGATCTTTGGAATGATTGTTTCACTACCGATCTTAGTTGCCTACTATGCAATATTGGAATTTGTTCATTGA

Protein sequence

>Msa1113300

MIGWEDVYKVIVAVVPLYFALILGYGSVRWWKIFTREQCDAINKLVCYFTLPLFAFEFTAHIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKVSYSWSITSFSLCTLTNSLVVGIPMVKPMYGPLGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSISNVTCEGEESKDVEANNIVEYTSSKLPFFQLMKRVWLKFIANPNSYGCVIGISWAFISNRWNLELPSMVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTVFGLVLKFIAGPAAMAISAFIVGLRGDVLRIAIIQAAVPQSITSFIFAKEYELHAEVLSTAVIFGMIVSLPILVAYYAILEFVH*