Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067950 | XP_003624144.1 | 98.347 | 363 | 6 | 0 | 1 | 363 | 1 | 363 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067950 | sp|Q9FFD0|PIN5_ARATH | 69.421 | 363 | 99 | 2 | 1 | 363 | 1 | 351 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067950 | Q673E6 | 98.347 | 363 | 6 | 0 | 1 | 363 | 1 | 363 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610850 | Msa1067950 | 0.831434 | 1.672944e-55 | -8.615850e-47 |
| Msa0622520 | Msa1067950 | 0.990772 | 3.012397e-184 | -8.615850e-47 |
| Msa0651340 | Msa1067950 | 0.829762 | 4.293873e-55 | -8.615850e-47 |
| Msa0693560 | Msa1067950 | 0.832492 | 9.167921e-56 | -8.615850e-47 |
| Msa0477070 | Msa1067950 | 0.825412 | 4.754442e-54 | -8.615850e-47 |
| Msa1028830 | Msa1067950 | 0.915293 | 6.995555e-85 | -8.615850e-47 |
| Msa1067950 | Msa1113300 | 0.907296 | 5.906786e-81 | -8.615850e-47 |
| Msa0259670 | Msa1067950 | 0.813704 | 2.236900e-51 | -8.615850e-47 |
| Msa0493640 | Msa1067950 | 0.815851 | 7.478613e-52 | -8.615850e-47 |
| Msa0521440 | Msa1067950 | 0.819608 | 1.062298e-52 | -8.615850e-47 |
| Msa0578890 | Msa1067950 | 0.837486 | 5.053207e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067950 | MtrunA17_Chr7g0249141 | 98.347 | 363 | 6 | 0 | 1 | 363 | 1 | 363 | 0.0 | 723 |
| Msa1067950 | MtrunA17_Chr7g0216571 | 39.722 | 360 | 210 | 2 | 1 | 359 | 12 | 365 | 2.58e-94 | 286 |
| Msa1067950 | MtrunA17_Chr6g0452821 | 39.058 | 361 | 217 | 2 | 1 | 360 | 1 | 359 | 7.84e-91 | 276 |
| Msa1067950 | MtrunA17_Chr7g0255941 | 48.876 | 178 | 86 | 1 | 187 | 359 | 412 | 589 | 2.52e-54 | 188 |
| Msa1067950 | MtrunA17_Chr7g0255941 | 46.193 | 197 | 94 | 2 | 1 | 188 | 1 | 194 | 9.98e-50 | 176 |
| Msa1067950 | MtrunA17_Chr4g0071571 | 45.408 | 196 | 95 | 2 | 169 | 359 | 435 | 623 | 1.70e-52 | 183 |
| Msa1067950 | MtrunA17_Chr4g0071571 | 49.359 | 156 | 78 | 1 | 1 | 155 | 1 | 156 | 6.63e-48 | 171 |
| Msa1067950 | MtrunA17_Chr4g0044181 | 49.412 | 170 | 81 | 1 | 195 | 359 | 488 | 657 | 4.80e-52 | 183 |
| Msa1067950 | MtrunA17_Chr4g0044181 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 2.70e-48 | 172 |
| Msa1067950 | MtrunA17_Chr6g0478431 | 42.857 | 210 | 111 | 2 | 159 | 359 | 393 | 602 | 7.91e-52 | 181 |
| Msa1067950 | MtrunA17_Chr6g0478431 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.11e-49 | 176 |
| Msa1067950 | MtrunA17_Chr1g0160461 | 52.632 | 152 | 72 | 0 | 208 | 359 | 468 | 619 | 1.51e-51 | 181 |
| Msa1067950 | MtrunA17_Chr1g0160461 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 1.69e-47 | 170 |
| Msa1067950 | MtrunA17_Chr4g0071551 | 41.919 | 198 | 102 | 3 | 1 | 188 | 1 | 195 | 7.36e-51 | 169 |
| Msa1067950 | MtrunA17_Chr8g0393111 | 50.000 | 156 | 77 | 1 | 1 | 155 | 1 | 156 | 3.99e-45 | 162 |
| Msa1067950 | MtrunA17_Chr8g0393111 | 40.541 | 185 | 81 | 3 | 175 | 331 | 334 | 517 | 2.43e-38 | 144 |
| Msa1067950 | MtrunA17_Chr1g0159341 | 48.235 | 170 | 83 | 1 | 195 | 359 | 356 | 525 | 1.92e-44 | 160 |
| Msa1067950 | MtrunA17_Chr1g0159341 | 47.742 | 155 | 81 | 0 | 1 | 155 | 1 | 155 | 6.62e-42 | 153 |
| Msa1067950 | MtrunA17_Chr2g0298971 | 45.806 | 155 | 84 | 0 | 1 | 155 | 1 | 155 | 1.41e-42 | 155 |
| Msa1067950 | MtrunA17_Chr2g0298971 | 39.109 | 202 | 79 | 5 | 179 | 340 | 320 | 517 | 2.50e-35 | 135 |
| Msa1067950 | MtrunA17_Chr4g0071561 | 43.860 | 171 | 90 | 2 | 169 | 337 | 150 | 316 | 4.22e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067950 | AT5G16530.1 | 69.421 | 363 | 99 | 2 | 1 | 363 | 1 | 351 | 0.0 | 512 |
| Msa1067950 | AT5G16530.2 | 68.529 | 340 | 95 | 2 | 1 | 340 | 1 | 328 | 1.98e-168 | 473 |
| Msa1067950 | AT5G15100.1 | 37.302 | 378 | 209 | 4 | 1 | 361 | 1 | 367 | 3.64e-84 | 260 |
| Msa1067950 | AT5G57090.2 | 47.027 | 185 | 92 | 2 | 180 | 359 | 362 | 545 | 3.23e-55 | 190 |
| Msa1067950 | AT5G57090.2 | 57.407 | 54 | 23 | 0 | 102 | 155 | 2 | 55 | 2.86e-11 | 65.1 |
| Msa1067950 | AT5G57090.1 | 47.027 | 185 | 92 | 2 | 180 | 359 | 462 | 645 | 2.08e-54 | 189 |
| Msa1067950 | AT5G57090.1 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 4.40e-49 | 175 |
| Msa1067950 | AT2G01420.1 | 41.071 | 224 | 105 | 4 | 163 | 359 | 387 | 610 | 9.12e-53 | 184 |
| Msa1067950 | AT2G01420.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.25e-50 | 179 |
| Msa1067950 | AT2G01420.2 | 50.000 | 168 | 79 | 1 | 197 | 359 | 447 | 614 | 9.67e-53 | 184 |
| Msa1067950 | AT2G01420.2 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.13e-50 | 179 |
| Msa1067950 | AT2G01420.3 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 3.62e-51 | 178 |
| Msa1067950 | AT2G01420.3 | 42.254 | 71 | 36 | 1 | 197 | 262 | 447 | 517 | 2.45e-11 | 65.5 |
| Msa1067950 | AT1G23080.3 | 47.368 | 190 | 93 | 2 | 175 | 359 | 426 | 613 | 2.33e-50 | 178 |
| Msa1067950 | AT1G23080.3 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.25e-49 | 175 |
| Msa1067950 | AT1G23080.4 | 47.368 | 190 | 93 | 2 | 175 | 359 | 426 | 613 | 2.33e-50 | 178 |
| Msa1067950 | AT1G23080.4 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.25e-49 | 175 |
| Msa1067950 | AT1G73590.1 | 45.024 | 211 | 97 | 4 | 168 | 359 | 410 | 620 | 2.43e-50 | 178 |
| Msa1067950 | AT1G73590.1 | 52.258 | 155 | 74 | 0 | 1 | 155 | 1 | 155 | 1.35e-48 | 173 |
| Msa1067950 | AT1G23080.1 | 47.368 | 190 | 93 | 2 | 175 | 359 | 430 | 617 | 2.73e-50 | 178 |
| Msa1067950 | AT1G23080.1 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.28e-49 | 175 |
| Msa1067950 | AT1G70940.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 6.00e-50 | 177 |
| Msa1067950 | AT1G70940.1 | 45.366 | 205 | 88 | 3 | 179 | 359 | 434 | 638 | 4.67e-49 | 175 |
| Msa1067950 | AT1G23080.2 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.30e-49 | 174 |
| Msa1067950 | AT1G23080.2 | 38.710 | 93 | 50 | 2 | 175 | 262 | 426 | 516 | 5.34e-12 | 67.4 |
| Msa1067950 | AT1G77110.1 | 47.283 | 184 | 94 | 1 | 179 | 359 | 385 | 568 | 7.53e-48 | 170 |
| Msa1067950 | AT1G77110.1 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.69e-40 | 149 |
| Msa1067950 | AT1G77110.2 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.22e-40 | 149 |
| Msa1067950 | AT1G77110.2 | 45.122 | 164 | 87 | 1 | 179 | 339 | 385 | 548 | 1.44e-38 | 145 |
Find 90 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATGCATTTGGATTAC+TGG | 0.173929 | 7_2:-62929239 | None:intergenic |
| ATATACATGCAGGTGGAATT+TGG | 0.222555 | 7_2:+62927792 | Msa1067950:intron |
| AATAAGAAGTTCATCTTAAA+AGG | 0.233267 | 7_2:-62927194 | None:intergenic |
| CCTTGAAACCATCGATGTTT+TGG | 0.234481 | 7_2:+62929344 | Msa1067950:three_prime_UTR |
| AAGATGAACTTCTTATTTAT+AGG | 0.235002 | 7_2:+62927200 | Msa1067950:CDS |
| ATGACACAACCATAGGAATT+TGG | 0.242982 | 7_2:-62927650 | None:intergenic |
| CATGGGCTTTCATATCTAAT+AGG | 0.262952 | 7_2:+62927681 | Msa1067950:CDS |
| GTCTCTTACAGGGTGATCTT+TGG | 0.270086 | 7_2:+62929068 | Msa1067950:intron |
| TTTACGAATTGCCATAATTC+AGG | 0.275399 | 7_2:+62928156 | Msa1067950:CDS |
| AAAATAAATAACCTGAATTA+TGG | 0.285827 | 7_2:-62928167 | None:intergenic |
| TGTCGCGGTGATTGCCCTTT+GGG | 0.292221 | 7_2:+62927250 | Msa1067950:CDS |
| GGGCACTGCCATGTTTAGTA+TGG | 0.309953 | 7_2:+62927867 | Msa1067950:CDS |
| CGGTTGTTCAAGCTATTATA+TGG | 0.310821 | 7_2:+62927414 | Msa1067950:CDS |
| CTAACAAATTCTCTTGTTGT+TGG | 0.319301 | 7_2:+62927332 | Msa1067950:CDS |
| GCTATTAGTGCTTTCATTGT+TGG | 0.319498 | 7_2:+62928118 | Msa1067950:CDS |
| AATTCCTATGGTTGTGTCAT+TGG | 0.321480 | 7_2:+62927653 | Msa1067950:CDS |
| GTAGCAAAGTAAGTTATTCT+TGG | 0.331589 | 7_2:+62927282 | Msa1067950:CDS |
| GCATATATCCATGATGCATT+TGG | 0.333965 | 7_2:-62929247 | None:intergenic |
| CACTTTGCTTCTATTTGTGT+TGG | 0.343196 | 7_2:+62927439 | Msa1067950:CDS |
| ATATGTGTTGTGCAAGAAAT+TGG | 0.354441 | 7_2:+62926931 | Msa1067950:five_prime_UTR |
| GTTGTGTCATTGGCATTTCA+TGG | 0.356642 | 7_2:+62927663 | Msa1067950:CDS |
| GGACCAAGTCTGACTGTATT+TGG | 0.359187 | 7_2:+62928058 | Msa1067950:CDS |
| TTGTCGCGGTGATTGCCCTT+TGG | 0.372998 | 7_2:+62927249 | Msa1067950:CDS |
| GCCACACACGCTTCATCAAT+TGG | 0.381628 | 7_2:-62927610 | None:intergenic |
| GAATTTGGAATTGCCAAGTA+TGG | 0.381720 | 7_2:+62927807 | Msa1067950:CDS |
| AGTAGCCTACTACGCAATAT+TGG | 0.386249 | 7_2:+62929115 | Msa1067950:CDS |
| CCAAAACATCGATGGTTTCA+AGG | 0.387063 | 7_2:-62929344 | None:intergenic |
| GGATCTTGTGGTTCAAGCTT+CGG | 0.388473 | 7_2:+62927394 | Msa1067950:CDS |
| GAAACCTATGTATGGACCTT+TGG | 0.390203 | 7_2:+62927367 | Msa1067950:CDS |
| TATAGTTTCTGTTAGGTAGT+TGG | 0.397285 | 7_2:+62929292 | Msa1067950:three_prime_UTR |
| GTGTTGGAGTTTAGAAGAAC+GGG | 0.402783 | 7_2:+62927455 | Msa1067950:CDS |
| AAGTCTGACTGTATTTGGTT+TGG | 0.414306 | 7_2:+62928063 | Msa1067950:CDS |
| AAACTCCAATATTGCGTAGT+AGG | 0.415626 | 7_2:-62929120 | None:intergenic |
| AAACCTATGTATGGACCTTT+GGG | 0.431609 | 7_2:+62927368 | Msa1067950:CDS |
| CGCTTCATCAATTGGAAGAA+AGG | 0.444864 | 7_2:-62927602 | None:intergenic |
| ATCATGTCAAAGGCTGGAAC+GGG | 0.450270 | 7_2:+62927847 | Msa1067950:CDS |
| CTTAAGGGTTAAAGTTAAGA+AGG | 0.456463 | 7_2:+62929176 | Msa1067950:three_prime_UTR |
| TTACTAATGCTACTAGCCTT+CGG | 0.463777 | 7_2:-62927506 | None:intergenic |
| ATAGCAAATCCAAATTCCTA+TGG | 0.475494 | 7_2:+62927641 | Msa1067950:CDS |
| CCAATGGTGAAACCTATGTA+TGG | 0.489658 | 7_2:+62927359 | Msa1067950:CDS |
| GTTTAGAAGAACGGGAATAG+AGG | 0.490862 | 7_2:+62927463 | Msa1067950:CDS |
| ATGAAGGATGTGATGGATTG+TGG | 0.492604 | 7_2:-62928812 | None:intergenic |
| TTTGCACTAATATTAGGCTA+TGG | 0.493851 | 7_2:+62927059 | Msa1067950:CDS |
| TGTGTTGGAGTTTAGAAGAA+CGG | 0.506228 | 7_2:+62927454 | Msa1067950:CDS |
| GCACTAATAGCCATTGCTGC+TGG | 0.514558 | 7_2:-62928106 | None:intergenic |
| CCAGTAATCCAAATGCATCA+TGG | 0.515621 | 7_2:+62929239 | Msa1067950:three_prime_UTR |
| GGAATTGCCAAGTATGGTAG+AGG | 0.516261 | 7_2:+62927813 | Msa1067950:CDS |
| TTGTGTCATTGGCATTTCAT+GGG | 0.516530 | 7_2:+62927664 | Msa1067950:CDS |
| ATAGACCCCTCTACCATACT+TGG | 0.519190 | 7_2:-62927820 | None:intergenic |
| GCTACTACACTTAGCCCAAA+GGG | 0.523271 | 7_2:-62927264 | None:intergenic |
| ATATTGATCATGTCAAAGGC+TGG | 0.526511 | 7_2:+62927841 | Msa1067950:CDS |
| GATCATGTCAAAGGCTGGAA+CGG | 0.541123 | 7_2:+62927846 | Msa1067950:CDS |
| ACCTTTGGGCGTGGATCTTG+TGG | 0.542649 | 7_2:+62927382 | Msa1067950:CDS |
| CCATACATAGGTTTCACCAT+TGG | 0.550223 | 7_2:-62927359 | None:intergenic |
| CATTGCTGGACCAGCAGCAA+TGG | 0.551223 | 7_2:+62928096 | Msa1067950:CDS |
| TATTAGGCTATGGTTCTGTA+AGG | 0.555934 | 7_2:+62927069 | Msa1067950:CDS |
| ATTAGTAATGTAACATGTGA+AGG | 0.560057 | 7_2:+62927521 | Msa1067950:CDS |
| TATGTATGGACCTTTGGGCG+TGG | 0.570033 | 7_2:+62927373 | Msa1067950:CDS |
| GTCTATATTGATCATGTCAA+AGG | 0.570735 | 7_2:+62927837 | Msa1067950:CDS |
| GCGTAGTAGGCTACTAAGAT+CGG | 0.570919 | 7_2:-62929107 | None:intergenic |
| TTTAGAAGAACGGGAATAGA+GGG | 0.575235 | 7_2:+62927464 | Msa1067950:CDS |
| TGCTACTACACTTAGCCCAA+AGG | 0.578291 | 7_2:-62927265 | None:intergenic |
| GCTATGGTTCTGTAAGGTGG+TGG | 0.583525 | 7_2:+62927075 | Msa1067950:CDS |
| GAATTGCCAAGTATGGTAGA+GGG | 0.589216 | 7_2:+62927814 | Msa1067950:CDS |
| TGTGTTGTGCAAGAAATTGG+AGG | 0.589694 | 7_2:+62926934 | Msa1067950:five_prime_UTR |
| GGCACTGCCATGTTTAGTAT+GGG | 0.590296 | 7_2:+62927868 | Msa1067950:CDS |
| GTGAACTCGAAGGCGAAGAG+TGG | 0.590300 | 7_2:-62927158 | None:intergenic |
| TCCAATTGATGAAGCGTGTG+TGG | 0.597137 | 7_2:+62927609 | Msa1067950:CDS |
| ACGCCCAAAGGTCCATACAT+AGG | 0.598945 | 7_2:-62927371 | None:intergenic |
| CAAGAGAAAGTGATTTCGTG+TGG | 0.600700 | 7_2:+62928037 | Msa1067950:CDS |
| AATATTAGTGCAAAATAGAG+TGG | 0.603576 | 7_2:-62927050 | None:intergenic |
| GCTTTCATTGTTGGATTGCG+TGG | 0.606124 | 7_2:+62928127 | Msa1067950:CDS |
| TCTTGTTGTTGGAATACCAA+TGG | 0.606269 | 7_2:+62927343 | Msa1067950:CDS |
| CGTCAGAACCAAAACATCGA+TGG | 0.613145 | 7_2:-62929352 | None:intergenic |
| ACCACAAGATCCACGCCCAA+AGG | 0.613248 | 7_2:-62927383 | None:intergenic |
| TAGGCTATGGTTCTGTAAGG+TGG | 0.613388 | 7_2:+62927072 | Msa1067950:CDS |
| GTACAAAGTTATTGTAGCAG+TGG | 0.621495 | 7_2:+62927025 | Msa1067950:CDS |
| AAACCAAATACAGTCAGACT+TGG | 0.623723 | 7_2:-62928061 | None:intergenic |
| ACTAGCCTTCGGTTTCAAAG+TGG | 0.629563 | 7_2:-62927495 | None:intergenic |
| TATAACCACTTTGAAACCGA+AGG | 0.633348 | 7_2:+62927490 | Msa1067950:CDS |
| AGAATACGAACTTCATGCCG+AGG | 0.640048 | 7_2:+62928844 | Msa1067950:CDS |
| AAGCTTACCCATACTAAACA+TGG | 0.644081 | 7_2:-62927875 | None:intergenic |
| GAACTTCTTATTTATAGGCG+CGG | 0.645236 | 7_2:+62927205 | Msa1067950:CDS |
| AATGCCAATGACACAACCAT+AGG | 0.648775 | 7_2:-62927657 | None:intergenic |
| AGGTGAAGAAAATAAAGATG+TGG | 0.654182 | 7_2:+62927541 | Msa1067950:CDS |
| TTACGCAGTGCTAAGAACCT+CGG | 0.657922 | 7_2:-62928861 | None:intergenic |
| ATCGAAGCTAATCATTGTCG+CGG | 0.678060 | 7_2:+62927235 | Msa1067950:CDS |
| AATTGCCAAGTATGGTAGAG+GGG | 0.692420 | 7_2:+62927815 | Msa1067950:CDS |
| GATGTGCGCGGTGAACTCGA+AGG | 0.703238 | 7_2:-62927168 | None:intergenic |
| CTTAAAAGGATCGATGTGCG+CGG | 0.711568 | 7_2:-62927180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAAAAAAATGATT+GGG | + | chr7_2:62926991-62927010 | Msa1067950:exon | 10.0% |
| !!! | TATATTAATTTTCAAATGTT+TGG | + | chr7_2:62929046-62929065 | Msa1067950:intron | 10.0% |
| !! | GAAAACTAAAAAAAAATGAT+TGG | + | chr7_2:62926990-62927009 | Msa1067950:exon | 15.0% |
| !! | AAAATAAATAACCTGAATTA+TGG | - | chr7_2:62928170-62928189 | None:intergenic | 15.0% |
| !!! | CACATTTTTTGTATTTTTAA+AGG | + | chr7_2:62928726-62928745 | Msa1067950:intron | 15.0% |
| !! | AATAAGAAGTTCATCTTAAA+AGG | - | chr7_2:62927197-62927216 | None:intergenic | 20.0% |
| !!! | AAGATGAACTTCTTATTTAT+AGG | + | chr7_2:62927200-62927219 | Msa1067950:CDS | 20.0% |
| !! | ACTATTATTAGCATTAAACA+TGG | + | chr7_2:62927934-62927953 | Msa1067950:intron | 20.0% |
| !! | AAATCTCTAAATATTACAAG+AGG | + | chr7_2:62928239-62928258 | Msa1067950:intron | 20.0% |
| !!! | CATATGTAGATTTGTTAAAA+TGG | + | chr7_2:62928529-62928548 | Msa1067950:intron | 20.0% |
| !!! | AATGGATTAGCTAATATTTT+AGG | + | chr7_2:62928547-62928566 | Msa1067950:intron | 20.0% |
| !!! | TTTGAAATTTATCTCTAGAA+CGG | - | chr7_2:62928606-62928625 | None:intergenic | 20.0% |
| !!! | ATACCATTTTTGAAACTTAA+GGG | + | chr7_2:62929161-62929180 | Msa1067950:three_prime_UTR | 20.0% |
| !! | TCAATTTGAAAAAGAAACTT+TGG | - | chr7_2:62929207-62929226 | None:intergenic | 20.0% |
| !!! | TTTTGATTATAGTTTCTGTT+AGG | + | chr7_2:62929285-62929304 | Msa1067950:three_prime_UTR | 20.0% |
| !! | TAGTTTTCTTTTCTTTTGTG+TGG | - | chr7_2:62926978-62926997 | None:intergenic | 25.0% |
| ! | ACTAAAAAAAAATGATTGGG+TGG | + | chr7_2:62926994-62927013 | Msa1067950:exon | 25.0% |
| ! | CTAAAAAAAAATGATTGGGT+GGG | + | chr7_2:62926995-62927014 | Msa1067950:exon | 25.0% |
| ! | AATATTAGTGCAAAATAGAG+TGG | - | chr7_2:62927053-62927072 | None:intergenic | 25.0% |
| !! | CTCTATTTTGCACTAATATT+AGG | + | chr7_2:62927053-62927072 | Msa1067950:CDS | 25.0% |
| ! | ATTAGTAATGTAACATGTGA+AGG | + | chr7_2:62927521-62927540 | Msa1067950:CDS | 25.0% |
| ! | TATTAGCATTAAACATGGTT+AGG | + | chr7_2:62927939-62927958 | Msa1067950:intron | 25.0% |
| ! | ATTAGCATTAAACATGGTTA+GGG | + | chr7_2:62927940-62927959 | Msa1067950:intron | 25.0% |
| ! | ATTGTCTTTACTAAAGAAAG+AGG | - | chr7_2:62928330-62928349 | None:intergenic | 25.0% |
| !! | AATCATATGAATGATTTGGA+TGG | - | chr7_2:62928443-62928462 | None:intergenic | 25.0% |
| ! | GTTGAATCATATGAATGATT+TGG | - | chr7_2:62928447-62928466 | None:intergenic | 25.0% |
| ! | TTAACAAATCTACATATGAG+TGG | - | chr7_2:62928527-62928546 | None:intergenic | 25.0% |
| !!! | GATTAGCTAATATTTTAGGA+TGG | + | chr7_2:62928551-62928570 | Msa1067950:intron | 25.0% |
| !!! | CATTTTTTGTGTTTTTTCTG+TGG | + | chr7_2:62928629-62928648 | Msa1067950:intron | 25.0% |
| ! | CAATGCATAAAATAAATGCA+AGG | - | chr7_2:62928677-62928696 | None:intergenic | 25.0% |
| ! | GTATTCTTTAGCAAAAATGA+AGG | - | chr7_2:62928831-62928850 | None:intergenic | 25.0% |
| ! | ATTTCTACAATGTTCAAGAA+TGG | + | chr7_2:62928891-62928910 | Msa1067950:intron | 25.0% |
| !!! | GATACCATTTTTGAAACTTA+AGG | + | chr7_2:62929160-62929179 | Msa1067950:three_prime_UTR | 25.0% |
| ! | TAACCCTTAAGTTTCAAAAA+TGG | - | chr7_2:62929167-62929186 | None:intergenic | 25.0% |
| !!! | AAGGTTTTGTTACATTTAGT+GGG | - | chr7_2:62929328-62929347 | None:intergenic | 25.0% |
| ATATGTGTTGTGCAAGAAAT+TGG | + | chr7_2:62926931-62926950 | Msa1067950:five_prime_UTR | 30.0% | |
| TTTGCACTAATATTAGGCTA+TGG | + | chr7_2:62927059-62927078 | Msa1067950:CDS | 30.0% | |
| GTAGCAAAGTAAGTTATTCT+TGG | + | chr7_2:62927282-62927301 | Msa1067950:CDS | 30.0% | |
| ! | CTAACAAATTCTCTTGTTGT+TGG | + | chr7_2:62927332-62927351 | Msa1067950:CDS | 30.0% |
| AGGTGAAGAAAATAAAGATG+TGG | + | chr7_2:62927541-62927560 | Msa1067950:CDS | 30.0% | |
| ATAGCAAATCCAAATTCCTA+TGG | + | chr7_2:62927641-62927660 | Msa1067950:CDS | 30.0% | |
| TCTCACATATATATACATGC+AGG | + | chr7_2:62927782-62927801 | Msa1067950:intron | 30.0% | |
| GTCTATATTGATCATGTCAA+AGG | + | chr7_2:62927837-62927856 | Msa1067950:CDS | 30.0% | |
| !! | TATATGTGATGTGTTGATTC+AGG | + | chr7_2:62927998-62928017 | Msa1067950:intron | 30.0% |
| !!! | TGTTGATTCAGGTATTTTCA+TGG | + | chr7_2:62928009-62928028 | Msa1067950:intron | 30.0% |
| !!! | TTGGTTTTAAAGTTCATTGC+TGG | + | chr7_2:62928082-62928101 | Msa1067950:CDS | 30.0% |
| TTTACGAATTGCCATAATTC+AGG | + | chr7_2:62928156-62928175 | Msa1067950:CDS | 30.0% | |
| GTGTGAAAGGATGATATATA+TGG | - | chr7_2:62928208-62928227 | None:intergenic | 30.0% | |
| ATCCTTTCACACACTAAAAA+AGG | + | chr7_2:62928216-62928235 | Msa1067950:intron | 30.0% | |
| !!! | TTCCTTTTTTAGTGTGTGAA+AGG | - | chr7_2:62928221-62928240 | None:intergenic | 30.0% |
| ! | GATTTTGTCTATGCTATAAG+TGG | - | chr7_2:62928308-62928327 | None:intergenic | 30.0% |
| !!! | GTTTTTGGCAAAAACAAAAG+AGG | - | chr7_2:62928355-62928374 | None:intergenic | 30.0% |
| !!! | ATAGTTTTTGGCAATGGAAA+TGG | - | chr7_2:62928377-62928396 | None:intergenic | 30.0% |
| !!! | TCACAAATAGTTTTTGGCAA+TGG | - | chr7_2:62928383-62928402 | None:intergenic | 30.0% |
| !! | TTTGTTTATTTATTCGGTGC+AGG | + | chr7_2:62928781-62928800 | Msa1067950:intron | 30.0% |
| CTTAAGGGTTAAAGTTAAGA+AGG | + | chr7_2:62929176-62929195 | Msa1067950:three_prime_UTR | 30.0% | |
| TATAGTTTCTGTTAGGTAGT+TGG | + | chr7_2:62929292-62929311 | Msa1067950:three_prime_UTR | 30.0% | |
| !!! | CAAGGTTTTGTTACATTTAG+TGG | - | chr7_2:62929329-62929348 | None:intergenic | 30.0% |
| GTACAAAGTTATTGTAGCAG+TGG | + | chr7_2:62927025-62927044 | Msa1067950:CDS | 35.0% | |
| ! | TATTAGGCTATGGTTCTGTA+AGG | + | chr7_2:62927069-62927088 | Msa1067950:CDS | 35.0% |
| ! | GAACTTCTTATTTATAGGCG+CGG | + | chr7_2:62927205-62927224 | Msa1067950:CDS | 35.0% |
| !! | TCTTGTTGTTGGAATACCAA+TGG | + | chr7_2:62927343-62927362 | Msa1067950:CDS | 35.0% |
| AAACCTATGTATGGACCTTT+GGG | + | chr7_2:62927368-62927387 | Msa1067950:CDS | 35.0% | |
| CGGTTGTTCAAGCTATTATA+TGG | + | chr7_2:62927414-62927433 | Msa1067950:CDS | 35.0% | |
| CACTTTGCTTCTATTTGTGT+TGG | + | chr7_2:62927439-62927458 | Msa1067950:CDS | 35.0% | |
| TGTGTTGGAGTTTAGAAGAA+CGG | + | chr7_2:62927454-62927473 | Msa1067950:CDS | 35.0% | |
| TTTAGAAGAACGGGAATAGA+GGG | + | chr7_2:62927464-62927483 | Msa1067950:CDS | 35.0% | |
| !! | TATAACCACTTTGAAACCGA+AGG | + | chr7_2:62927490-62927509 | Msa1067950:CDS | 35.0% |
| !! | TTACTAATGCTACTAGCCTT+CGG | - | chr7_2:62927509-62927528 | None:intergenic | 35.0% |
| ATGACACAACCATAGGAATT+TGG | - | chr7_2:62927653-62927672 | None:intergenic | 35.0% | |
| AATTCCTATGGTTGTGTCAT+TGG | + | chr7_2:62927653-62927672 | Msa1067950:CDS | 35.0% | |
| ! | TTGTGTCATTGGCATTTCAT+GGG | + | chr7_2:62927664-62927683 | Msa1067950:CDS | 35.0% |
| CATGGGCTTTCATATCTAAT+AGG | + | chr7_2:62927681-62927700 | Msa1067950:CDS | 35.0% | |
| GTATGTGATTGAGTGTAATG+TGG | + | chr7_2:62927759-62927778 | Msa1067950:intron | 35.0% | |
| CACATATATATACATGCAGG+TGG | + | chr7_2:62927785-62927804 | Msa1067950:intron | 35.0% | |
| ATATACATGCAGGTGGAATT+TGG | + | chr7_2:62927792-62927811 | Msa1067950:intron | 35.0% | |
| ! | GAATTTGGAATTGCCAAGTA+TGG | + | chr7_2:62927807-62927826 | Msa1067950:CDS | 35.0% |
| ATATTGATCATGTCAAAGGC+TGG | + | chr7_2:62927841-62927860 | Msa1067950:CDS | 35.0% | |
| AAGCTTACCCATACTAAACA+TGG | - | chr7_2:62927878-62927897 | None:intergenic | 35.0% | |
| AAACCAAATACAGTCAGACT+TGG | - | chr7_2:62928064-62928083 | None:intergenic | 35.0% | |
| AAGTCTGACTGTATTTGGTT+TGG | + | chr7_2:62928063-62928082 | Msa1067950:CDS | 35.0% | |
| GCTATTAGTGCTTTCATTGT+TGG | + | chr7_2:62928118-62928137 | Msa1067950:CDS | 35.0% | |
| TACAAGAGGCTACAATCTTA+TGG | + | chr7_2:62928253-62928272 | Msa1067950:intron | 35.0% | |
| ACAAGAGGCTACAATCTTAT+GGG | + | chr7_2:62928254-62928273 | Msa1067950:intron | 35.0% | |
| ! | TTGGCAATGGAAATGGTTTT+TGG | - | chr7_2:62928370-62928389 | None:intergenic | 35.0% |
| ! | CGAGCTTCACAAATAGTTTT+TGG | - | chr7_2:62928389-62928408 | None:intergenic | 35.0% |
| ! | CATATGAATGATTTGGATGG+TGG | - | chr7_2:62928440-62928459 | None:intergenic | 35.0% |
| ! | TGAGCTTAGTTTAGTTGGTA+AGG | - | chr7_2:62928701-62928720 | None:intergenic | 35.0% |
| TCATGTGAGCTTAGTTTAGT+TGG | - | chr7_2:62928706-62928725 | None:intergenic | 35.0% | |
| AGCAAAAATGAAGGATGTGA+TGG | - | chr7_2:62928822-62928841 | None:intergenic | 35.0% | |
| TCAAATGTTTGGTCTCTTAC+AGG | + | chr7_2:62929057-62929076 | Msa1067950:intron | 35.0% | |
| CAAATGTTTGGTCTCTTACA+GGG | + | chr7_2:62929058-62929077 | Msa1067950:intron | 35.0% | |
| AAACTCCAATATTGCGTAGT+AGG | - | chr7_2:62929123-62929142 | None:intergenic | 35.0% | |
| GCATATATCCATGATGCATT+TGG | - | chr7_2:62929250-62929269 | None:intergenic | 35.0% | |
| TGTGTTGTGCAAGAAATTGG+AGG | + | chr7_2:62926934-62926953 | Msa1067950:five_prime_UTR | 40.0% | |
| ATCGAAGCTAATCATTGTCG+CGG | + | chr7_2:62927235-62927254 | Msa1067950:CDS | 40.0% | |
| CCATACATAGGTTTCACCAT+TGG | - | chr7_2:62927362-62927381 | None:intergenic | 40.0% | |
| CCAATGGTGAAACCTATGTA+TGG | + | chr7_2:62927359-62927378 | Msa1067950:CDS | 40.0% | |
| GAAACCTATGTATGGACCTT+TGG | + | chr7_2:62927367-62927386 | Msa1067950:CDS | 40.0% | |
| GTGTTGGAGTTTAGAAGAAC+GGG | + | chr7_2:62927455-62927474 | Msa1067950:CDS | 40.0% | |
| GTTTAGAAGAACGGGAATAG+AGG | + | chr7_2:62927463-62927482 | Msa1067950:CDS | 40.0% | |
| CGCTTCATCAATTGGAAGAA+AGG | - | chr7_2:62927605-62927624 | None:intergenic | 40.0% | |
| AATGCCAATGACACAACCAT+AGG | - | chr7_2:62927660-62927679 | None:intergenic | 40.0% | |
| ! | GTTGTGTCATTGGCATTTCA+TGG | + | chr7_2:62927663-62927682 | Msa1067950:CDS | 40.0% |
| GAATTGCCAAGTATGGTAGA+GGG | + | chr7_2:62927814-62927833 | Msa1067950:CDS | 40.0% | |
| AATTGCCAAGTATGGTAGAG+GGG | + | chr7_2:62927815-62927834 | Msa1067950:CDS | 40.0% | |
| CAAGAGAAAGTGATTTCGTG+TGG | + | chr7_2:62928037-62928056 | Msa1067950:CDS | 40.0% | |
| ! | GAATGATTTGGATGGTGGTA+CGG | - | chr7_2:62928435-62928454 | None:intergenic | 40.0% |
| AAGGTCCAGAGTTCAAATCA+CGG | - | chr7_2:62928658-62928677 | None:intergenic | 40.0% | |
| !! | ATGAAGGATGTGATGGATTG+TGG | - | chr7_2:62928815-62928834 | None:intergenic | 40.0% |
| AGTAGCCTACTACGCAATAT+TGG | + | chr7_2:62929115-62929134 | Msa1067950:CDS | 40.0% | |
| CCATGATGCATTTGGATTAC+TGG | - | chr7_2:62929242-62929261 | None:intergenic | 40.0% | |
| CCAGTAATCCAAATGCATCA+TGG | + | chr7_2:62929239-62929258 | Msa1067950:three_prime_UTR | 40.0% | |
| CCAAAACATCGATGGTTTCA+AGG | - | chr7_2:62929347-62929366 | None:intergenic | 40.0% | |
| ! | CCTTGAAACCATCGATGTTT+TGG | + | chr7_2:62929344-62929363 | Msa1067950:three_prime_UTR | 40.0% |
| ! | TAGGCTATGGTTCTGTAAGG+TGG | + | chr7_2:62927072-62927091 | Msa1067950:CDS | 45.0% |
| CTTAAAAGGATCGATGTGCG+CGG | - | chr7_2:62927183-62927202 | None:intergenic | 45.0% | |
| GCTACTACACTTAGCCCAAA+GGG | - | chr7_2:62927267-62927286 | None:intergenic | 45.0% | |
| TGCTACTACACTTAGCCCAA+AGG | - | chr7_2:62927268-62927287 | None:intergenic | 45.0% | |
| GGATCTTGTGGTTCAAGCTT+CGG | + | chr7_2:62927394-62927413 | Msa1067950:CDS | 45.0% | |
| !! | ACTAGCCTTCGGTTTCAAAG+TGG | - | chr7_2:62927498-62927517 | None:intergenic | 45.0% |
| TCCAATTGATGAAGCGTGTG+TGG | + | chr7_2:62927609-62927628 | Msa1067950:CDS | 45.0% | |
| GGAATTGCCAAGTATGGTAG+AGG | + | chr7_2:62927813-62927832 | Msa1067950:CDS | 45.0% | |
| ATAGACCCCTCTACCATACT+TGG | - | chr7_2:62927823-62927842 | None:intergenic | 45.0% | |
| GATCATGTCAAAGGCTGGAA+CGG | + | chr7_2:62927846-62927865 | Msa1067950:CDS | 45.0% | |
| ATCATGTCAAAGGCTGGAAC+GGG | + | chr7_2:62927847-62927866 | Msa1067950:CDS | 45.0% | |
| GGCACTGCCATGTTTAGTAT+GGG | + | chr7_2:62927868-62927887 | Msa1067950:CDS | 45.0% | |
| GGACCAAGTCTGACTGTATT+TGG | + | chr7_2:62928058-62928077 | Msa1067950:CDS | 45.0% | |
| GCTTTCATTGTTGGATTGCG+TGG | + | chr7_2:62928127-62928146 | Msa1067950:CDS | 45.0% | |
| TGAGTGGAGTTAGTGATGCT+AGG | - | chr7_2:62928511-62928530 | None:intergenic | 45.0% | |
| AGAATACGAACTTCATGCCG+AGG | + | chr7_2:62928844-62928863 | Msa1067950:CDS | 45.0% | |
| TTACGCAGTGCTAAGAACCT+CGG | - | chr7_2:62928864-62928883 | None:intergenic | 45.0% | |
| GTCTCTTACAGGGTGATCTT+TGG | + | chr7_2:62929068-62929087 | Msa1067950:intron | 45.0% | |
| GCGTAGTAGGCTACTAAGAT+CGG | - | chr7_2:62929110-62929129 | None:intergenic | 45.0% | |
| CGTCAGAACCAAAACATCGA+TGG | - | chr7_2:62929355-62929374 | None:intergenic | 45.0% | |
| !!! | AATTATTTTGTTTATTTATT+CGG | + | chr7_2:62928775-62928794 | Msa1067950:intron | 5.0% |
| ! | GCTATGGTTCTGTAAGGTGG+TGG | + | chr7_2:62927075-62927094 | Msa1067950:CDS | 50.0% |
| ACGCCCAAAGGTCCATACAT+AGG | - | chr7_2:62927374-62927393 | None:intergenic | 50.0% | |
| TATGTATGGACCTTTGGGCG+TGG | + | chr7_2:62927373-62927392 | Msa1067950:CDS | 50.0% | |
| GCCACACACGCTTCATCAAT+TGG | - | chr7_2:62927613-62927632 | None:intergenic | 50.0% | |
| ! | GGGCACTGCCATGTTTAGTA+TGG | + | chr7_2:62927867-62927886 | Msa1067950:CDS | 50.0% |
| GCACTAATAGCCATTGCTGC+TGG | - | chr7_2:62928109-62928128 | None:intergenic | 50.0% | |
| GGTGTCCGTGATTTGAACTC+TGG | + | chr7_2:62928650-62928669 | Msa1067950:intron | 50.0% | |
| GTGAACTCGAAGGCGAAGAG+TGG | - | chr7_2:62927161-62927180 | None:intergenic | 55.0% | |
| TTGTCGCGGTGATTGCCCTT+TGG | + | chr7_2:62927249-62927268 | Msa1067950:CDS | 55.0% | |
| TGTCGCGGTGATTGCCCTTT+GGG | + | chr7_2:62927250-62927269 | Msa1067950:CDS | 55.0% | |
| ACCTTTGGGCGTGGATCTTG+TGG | + | chr7_2:62927382-62927401 | Msa1067950:CDS | 55.0% | |
| ACCACAAGATCCACGCCCAA+AGG | - | chr7_2:62927386-62927405 | None:intergenic | 55.0% | |
| CATTGCTGGACCAGCAGCAA+TGG | + | chr7_2:62928096-62928115 | Msa1067950:CDS | 55.0% | |
| GATGTGCGCGGTGAACTCGA+AGG | - | chr7_2:62927171-62927190 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 62926909 | 62929433 | 62926909 | ID=Msa1067950;Name=Msa1067950 |
| chr7_2 | mRNA | 62926909 | 62929433 | 62926909 | ID=Msa1067950-mRNA-1;Parent=Msa1067950;Name=Msa1067950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=96|1|1|1|1|1|5|282|363 |
| chr7_2 | exon | 62926909 | 62927702 | 62926909 | ID=Msa1067950-mRNA-1:exon:12841;Parent=Msa1067950-mRNA-1 |
| chr7_2 | exon | 62927804 | 62927889 | 62927804 | ID=Msa1067950-mRNA-1:exon:12842;Parent=Msa1067950-mRNA-1 |
| chr7_2 | exon | 62928020 | 62928177 | 62928020 | ID=Msa1067950-mRNA-1:exon:12843;Parent=Msa1067950-mRNA-1 |
| chr7_2 | exon | 62928803 | 62928879 | 62928803 | ID=Msa1067950-mRNA-1:exon:12844;Parent=Msa1067950-mRNA-1 |
| chr7_2 | exon | 62929079 | 62929433 | 62929079 | ID=Msa1067950-mRNA-1:exon:12845;Parent=Msa1067950-mRNA-1 |
| chr7_2 | five_prime_UTR | 62926909 | 62927004 | 62926909 | ID=Msa1067950-mRNA-1:five_prime_utr;Parent=Msa1067950-mRNA-1 |
| chr7_2 | CDS | 62927005 | 62927702 | 62927005 | ID=Msa1067950-mRNA-1:cds;Parent=Msa1067950-mRNA-1 |
| chr7_2 | CDS | 62927804 | 62927889 | 62927804 | ID=Msa1067950-mRNA-1:cds;Parent=Msa1067950-mRNA-1 |
| chr7_2 | CDS | 62928020 | 62928177 | 62928020 | ID=Msa1067950-mRNA-1:cds;Parent=Msa1067950-mRNA-1 |
| chr7_2 | CDS | 62928803 | 62928879 | 62928803 | ID=Msa1067950-mRNA-1:cds;Parent=Msa1067950-mRNA-1 |
| chr7_2 | CDS | 62929079 | 62929151 | 62929079 | ID=Msa1067950-mRNA-1:cds;Parent=Msa1067950-mRNA-1 |
| chr7_2 | three_prime_UTR | 62929152 | 62929433 | 62929152 | ID=Msa1067950-mRNA-1:three_prime_utr;Parent=Msa1067950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
