Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622520 | XP_003624144.1 | 98.347 | 363 | 6 | 0 | 1 | 363 | 1 | 363 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622520 | sp|Q9FFD0|PIN5_ARATH | 69.421 | 363 | 99 | 2 | 1 | 363 | 1 | 351 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610850 | Msa0622520 | 0.826713 | 2.332977e-54 | -8.615850e-47 |
| Msa0622520 | Msa0651340 | 0.824642 | 7.225415e-54 | -8.615850e-47 |
| Msa0622520 | Msa0693560 | 0.830792 | 2.405075e-55 | -8.615850e-47 |
| Msa0622520 | Msa1028830 | 0.916283 | 2.144875e-85 | -8.615850e-47 |
| Msa0622520 | Msa1067950 | 0.990772 | 3.012397e-184 | -8.615850e-47 |
| Msa0622520 | Msa1113300 | 0.899861 | 1.302128e-77 | -8.615850e-47 |
| Msa0622520 | Msa1307110 | 0.801788 | 7.633381e-49 | -8.615850e-47 |
| Msa0477070 | Msa0622520 | 0.822622 | 2.146993e-53 | -8.615850e-47 |
| Msa0259670 | Msa0622520 | 0.815701 | 8.077083e-52 | -8.615850e-47 |
| Msa0493640 | Msa0622520 | 0.813221 | 2.856536e-51 | -8.615850e-47 |
| Msa0521440 | Msa0622520 | 0.816285 | 5.984646e-52 | -8.615850e-47 |
| Msa0578890 | Msa0622520 | 0.835556 | 1.566642e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622520 | MtrunA17_Chr7g0249141 | 98.347 | 363 | 6 | 0 | 1 | 363 | 1 | 363 | 0.0 | 723 |
| Msa0622520 | MtrunA17_Chr7g0216571 | 39.722 | 360 | 210 | 2 | 1 | 359 | 12 | 365 | 2.58e-94 | 286 |
| Msa0622520 | MtrunA17_Chr6g0452821 | 39.058 | 361 | 217 | 2 | 1 | 360 | 1 | 359 | 7.84e-91 | 276 |
| Msa0622520 | MtrunA17_Chr7g0255941 | 48.876 | 178 | 86 | 1 | 187 | 359 | 412 | 589 | 2.52e-54 | 188 |
| Msa0622520 | MtrunA17_Chr7g0255941 | 46.193 | 197 | 94 | 2 | 1 | 188 | 1 | 194 | 9.98e-50 | 176 |
| Msa0622520 | MtrunA17_Chr4g0071571 | 45.408 | 196 | 95 | 2 | 169 | 359 | 435 | 623 | 1.70e-52 | 183 |
| Msa0622520 | MtrunA17_Chr4g0071571 | 49.359 | 156 | 78 | 1 | 1 | 155 | 1 | 156 | 6.63e-48 | 171 |
| Msa0622520 | MtrunA17_Chr4g0044181 | 49.412 | 170 | 81 | 1 | 195 | 359 | 488 | 657 | 4.80e-52 | 183 |
| Msa0622520 | MtrunA17_Chr4g0044181 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 2.70e-48 | 172 |
| Msa0622520 | MtrunA17_Chr6g0478431 | 42.857 | 210 | 111 | 2 | 159 | 359 | 393 | 602 | 7.91e-52 | 181 |
| Msa0622520 | MtrunA17_Chr6g0478431 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.11e-49 | 176 |
| Msa0622520 | MtrunA17_Chr1g0160461 | 52.632 | 152 | 72 | 0 | 208 | 359 | 468 | 619 | 1.51e-51 | 181 |
| Msa0622520 | MtrunA17_Chr1g0160461 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 1.69e-47 | 170 |
| Msa0622520 | MtrunA17_Chr4g0071551 | 41.919 | 198 | 102 | 3 | 1 | 188 | 1 | 195 | 7.36e-51 | 169 |
| Msa0622520 | MtrunA17_Chr8g0393111 | 50.000 | 156 | 77 | 1 | 1 | 155 | 1 | 156 | 3.99e-45 | 162 |
| Msa0622520 | MtrunA17_Chr8g0393111 | 40.541 | 185 | 81 | 3 | 175 | 331 | 334 | 517 | 2.43e-38 | 144 |
| Msa0622520 | MtrunA17_Chr1g0159341 | 48.235 | 170 | 83 | 1 | 195 | 359 | 356 | 525 | 1.92e-44 | 160 |
| Msa0622520 | MtrunA17_Chr1g0159341 | 47.742 | 155 | 81 | 0 | 1 | 155 | 1 | 155 | 6.62e-42 | 153 |
| Msa0622520 | MtrunA17_Chr2g0298971 | 45.806 | 155 | 84 | 0 | 1 | 155 | 1 | 155 | 1.41e-42 | 155 |
| Msa0622520 | MtrunA17_Chr2g0298971 | 39.109 | 202 | 79 | 5 | 179 | 340 | 320 | 517 | 2.50e-35 | 135 |
| Msa0622520 | MtrunA17_Chr4g0071561 | 43.860 | 171 | 90 | 2 | 169 | 337 | 150 | 316 | 4.22e-39 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622520 | AT5G16530.1 | 69.421 | 363 | 99 | 2 | 1 | 363 | 1 | 351 | 0.0 | 512 |
| Msa0622520 | AT5G16530.2 | 68.529 | 340 | 95 | 2 | 1 | 340 | 1 | 328 | 1.98e-168 | 473 |
| Msa0622520 | AT5G15100.1 | 37.302 | 378 | 209 | 4 | 1 | 361 | 1 | 367 | 3.64e-84 | 260 |
| Msa0622520 | AT5G57090.2 | 47.027 | 185 | 92 | 2 | 180 | 359 | 362 | 545 | 3.23e-55 | 190 |
| Msa0622520 | AT5G57090.2 | 57.407 | 54 | 23 | 0 | 102 | 155 | 2 | 55 | 2.86e-11 | 65.1 |
| Msa0622520 | AT5G57090.1 | 47.027 | 185 | 92 | 2 | 180 | 359 | 462 | 645 | 2.08e-54 | 189 |
| Msa0622520 | AT5G57090.1 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 4.40e-49 | 175 |
| Msa0622520 | AT2G01420.1 | 41.071 | 224 | 105 | 4 | 163 | 359 | 387 | 610 | 9.12e-53 | 184 |
| Msa0622520 | AT2G01420.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.25e-50 | 179 |
| Msa0622520 | AT2G01420.2 | 50.000 | 168 | 79 | 1 | 197 | 359 | 447 | 614 | 9.67e-53 | 184 |
| Msa0622520 | AT2G01420.2 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.13e-50 | 179 |
| Msa0622520 | AT2G01420.3 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 3.62e-51 | 178 |
| Msa0622520 | AT2G01420.3 | 42.254 | 71 | 36 | 1 | 197 | 262 | 447 | 517 | 2.45e-11 | 65.5 |
| Msa0622520 | AT1G23080.3 | 47.368 | 190 | 93 | 2 | 175 | 359 | 426 | 613 | 2.33e-50 | 178 |
| Msa0622520 | AT1G23080.3 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.25e-49 | 175 |
| Msa0622520 | AT1G23080.4 | 47.368 | 190 | 93 | 2 | 175 | 359 | 426 | 613 | 2.33e-50 | 178 |
| Msa0622520 | AT1G23080.4 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.25e-49 | 175 |
| Msa0622520 | AT1G73590.1 | 45.024 | 211 | 97 | 4 | 168 | 359 | 410 | 620 | 2.43e-50 | 178 |
| Msa0622520 | AT1G73590.1 | 52.258 | 155 | 74 | 0 | 1 | 155 | 1 | 155 | 1.35e-48 | 173 |
| Msa0622520 | AT1G23080.1 | 47.368 | 190 | 93 | 2 | 175 | 359 | 430 | 617 | 2.73e-50 | 178 |
| Msa0622520 | AT1G23080.1 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.28e-49 | 175 |
| Msa0622520 | AT1G70940.1 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 6.00e-50 | 177 |
| Msa0622520 | AT1G70940.1 | 45.366 | 205 | 88 | 3 | 179 | 359 | 434 | 638 | 4.67e-49 | 175 |
| Msa0622520 | AT1G23080.2 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.30e-49 | 174 |
| Msa0622520 | AT1G23080.2 | 38.710 | 93 | 50 | 2 | 175 | 262 | 426 | 516 | 5.34e-12 | 67.4 |
| Msa0622520 | AT1G77110.1 | 47.283 | 184 | 94 | 1 | 179 | 359 | 385 | 568 | 7.53e-48 | 170 |
| Msa0622520 | AT1G77110.1 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.69e-40 | 149 |
| Msa0622520 | AT1G77110.2 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.22e-40 | 149 |
| Msa0622520 | AT1G77110.2 | 45.122 | 164 | 87 | 1 | 179 | 339 | 385 | 548 | 1.44e-38 | 145 |
Find 90 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATGCATTTGGATTAC+TGG | 0.173929 | 4_2:+74938995 | None:intergenic |
| ATATACATGCAGGTGGAATT+TGG | 0.222555 | 4_2:-74940442 | Msa0622520:intron |
| AATAAGAAGTTCATCTTAAA+AGG | 0.233267 | 4_2:+74941040 | None:intergenic |
| CCTTGAAACCATCGATGTTT+TGG | 0.234481 | 4_2:-74938890 | Msa0622520:three_prime_UTR |
| AAGATGAACTTCTTATTTAT+AGG | 0.235002 | 4_2:-74941034 | Msa0622520:CDS |
| ATGACACAACCATAGGAATT+TGG | 0.242982 | 4_2:+74940584 | None:intergenic |
| CATGGGCTTTCATATCTAAT+AGG | 0.262952 | 4_2:-74940553 | Msa0622520:intron |
| GTCTCTTACAGGGTGATCTT+TGG | 0.270086 | 4_2:-74939166 | Msa0622520:intron |
| TTTACGAATTGCCATAATTC+AGG | 0.275399 | 4_2:-74940078 | Msa0622520:intron |
| AAAATAAATAACCTGAATTA+TGG | 0.285827 | 4_2:+74940067 | None:intergenic |
| TGTCGCGGTGATTGCCCTTT+GGG | 0.292221 | 4_2:-74940984 | Msa0622520:CDS |
| GGGCACTGCCATGTTTAGTA+TGG | 0.309953 | 4_2:-74940367 | Msa0622520:CDS |
| CGGTTGTTCAAGCTATTATA+TGG | 0.310821 | 4_2:-74940820 | Msa0622520:CDS |
| CTAACAAATTCTCTTGTTGT+TGG | 0.319301 | 4_2:-74940902 | Msa0622520:CDS |
| GCTATTAGTGCTTTCATTGT+TGG | 0.319498 | 4_2:-74940116 | Msa0622520:CDS |
| AATTCCTATGGTTGTGTCAT+TGG | 0.321480 | 4_2:-74940581 | Msa0622520:CDS |
| GTAGCAAAGTAAGTTATTCT+TGG | 0.331589 | 4_2:-74940952 | Msa0622520:CDS |
| GCATATATCCATGATGCATT+TGG | 0.333965 | 4_2:+74938987 | None:intergenic |
| CACTTTGCTTCTATTTGTGT+TGG | 0.343196 | 4_2:-74940795 | Msa0622520:CDS |
| ATATGTGTTGTGCAAGAAAT+TGG | 0.354441 | 4_2:-74941303 | Msa0622520:five_prime_UTR |
| GTTGTGTCATTGGCATTTCA+TGG | 0.356642 | 4_2:-74940571 | Msa0622520:CDS |
| GGACCAAGTCTGACTGTATT+TGG | 0.359187 | 4_2:-74940176 | Msa0622520:CDS |
| TTGTCGCGGTGATTGCCCTT+TGG | 0.372998 | 4_2:-74940985 | Msa0622520:CDS |
| GCCACACACGCTTCATCAAT+TGG | 0.381628 | 4_2:+74940624 | None:intergenic |
| GAATTTGGAATTGCCAAGTA+TGG | 0.381720 | 4_2:-74940427 | Msa0622520:CDS |
| AGTAGCCTACTACGCAATAT+TGG | 0.386249 | 4_2:-74939119 | Msa0622520:CDS |
| CCAAAACATCGATGGTTTCA+AGG | 0.387063 | 4_2:+74938890 | None:intergenic |
| GGATCTTGTGGTTCAAGCTT+CGG | 0.388473 | 4_2:-74940840 | Msa0622520:CDS |
| GAAACCTATGTATGGACCTT+TGG | 0.390203 | 4_2:-74940867 | Msa0622520:CDS |
| TATAGTTTCTGTTAGGTAGT+TGG | 0.397285 | 4_2:-74938942 | Msa0622520:three_prime_UTR |
| GTGTTGGAGTTTAGAAGAAC+GGG | 0.402783 | 4_2:-74940779 | Msa0622520:CDS |
| AAGTCTGACTGTATTTGGTT+TGG | 0.414306 | 4_2:-74940171 | Msa0622520:CDS |
| AAACTCCAATATTGCGTAGT+AGG | 0.415626 | 4_2:+74939114 | None:intergenic |
| AAACCTATGTATGGACCTTT+GGG | 0.431609 | 4_2:-74940866 | Msa0622520:CDS |
| CGCTTCATCAATTGGAAGAA+AGG | 0.444864 | 4_2:+74940632 | None:intergenic |
| ATCATGTCAAAGGCTGGAAC+GGG | 0.450270 | 4_2:-74940387 | Msa0622520:CDS |
| CTTAAGGGTTAAAGTTAAGA+AGG | 0.456463 | 4_2:-74939058 | Msa0622520:three_prime_UTR |
| TTACTAATGCTACTAGCCTT+CGG | 0.463777 | 4_2:+74940728 | None:intergenic |
| ATAGCAAATCCAAATTCCTA+TGG | 0.475494 | 4_2:-74940593 | Msa0622520:CDS |
| CCAATGGTGAAACCTATGTA+TGG | 0.489658 | 4_2:-74940875 | Msa0622520:CDS |
| GTTTAGAAGAACGGGAATAG+AGG | 0.490862 | 4_2:-74940771 | Msa0622520:CDS |
| ATGAAGGATGTGATGGATTG+TGG | 0.492604 | 4_2:+74939422 | None:intergenic |
| TTTGCACTAATATTAGGCTA+TGG | 0.493851 | 4_2:-74941175 | Msa0622520:CDS |
| TGTGTTGGAGTTTAGAAGAA+CGG | 0.506228 | 4_2:-74940780 | Msa0622520:CDS |
| GCACTAATAGCCATTGCTGC+TGG | 0.514558 | 4_2:+74940128 | None:intergenic |
| CCAGTAATCCAAATGCATCA+TGG | 0.515621 | 4_2:-74938995 | Msa0622520:three_prime_UTR |
| GGAATTGCCAAGTATGGTAG+AGG | 0.516261 | 4_2:-74940421 | Msa0622520:CDS |
| TTGTGTCATTGGCATTTCAT+GGG | 0.516530 | 4_2:-74940570 | Msa0622520:CDS |
| ATAGACCCCTCTACCATACT+TGG | 0.519190 | 4_2:+74940414 | None:intergenic |
| GCTACTACACTTAGCCCAAA+GGG | 0.523271 | 4_2:+74940970 | None:intergenic |
| ATATTGATCATGTCAAAGGC+TGG | 0.526511 | 4_2:-74940393 | Msa0622520:CDS |
| GATCATGTCAAAGGCTGGAA+CGG | 0.541123 | 4_2:-74940388 | Msa0622520:CDS |
| ACCTTTGGGCGTGGATCTTG+TGG | 0.542649 | 4_2:-74940852 | Msa0622520:CDS |
| CCATACATAGGTTTCACCAT+TGG | 0.550223 | 4_2:+74940875 | None:intergenic |
| CATTGCTGGACCAGCAGCAA+TGG | 0.551223 | 4_2:-74940138 | Msa0622520:CDS |
| TATTAGGCTATGGTTCTGTA+AGG | 0.555934 | 4_2:-74941165 | Msa0622520:CDS |
| ATTAGTAATGTAACATGTGA+AGG | 0.560057 | 4_2:-74940713 | Msa0622520:CDS |
| TATGTATGGACCTTTGGGCG+TGG | 0.570033 | 4_2:-74940861 | Msa0622520:CDS |
| GTCTATATTGATCATGTCAA+AGG | 0.570735 | 4_2:-74940397 | Msa0622520:CDS |
| GCGTAGTAGGCTACTAAGAT+CGG | 0.570919 | 4_2:+74939127 | None:intergenic |
| TTTAGAAGAACGGGAATAGA+GGG | 0.575235 | 4_2:-74940770 | Msa0622520:CDS |
| TGCTACTACACTTAGCCCAA+AGG | 0.578291 | 4_2:+74940969 | None:intergenic |
| GCTATGGTTCTGTAAGGTGG+TGG | 0.583525 | 4_2:-74941159 | Msa0622520:CDS |
| GAATTGCCAAGTATGGTAGA+GGG | 0.589216 | 4_2:-74940420 | Msa0622520:CDS |
| TGTGTTGTGCAAGAAATTGG+AGG | 0.589694 | 4_2:-74941300 | Msa0622520:five_prime_UTR |
| GGCACTGCCATGTTTAGTAT+GGG | 0.590296 | 4_2:-74940366 | Msa0622520:intron |
| GTGAACTCGAAGGCGAAGAG+TGG | 0.590300 | 4_2:+74941076 | None:intergenic |
| TCCAATTGATGAAGCGTGTG+TGG | 0.597137 | 4_2:-74940625 | Msa0622520:CDS |
| ACGCCCAAAGGTCCATACAT+AGG | 0.598945 | 4_2:+74940863 | None:intergenic |
| CAAGAGAAAGTGATTTCGTG+TGG | 0.600700 | 4_2:-74940197 | Msa0622520:CDS |
| AATATTAGTGCAAAATAGAG+TGG | 0.603576 | 4_2:+74941184 | None:intergenic |
| GCTTTCATTGTTGGATTGCG+TGG | 0.606124 | 4_2:-74940107 | Msa0622520:CDS |
| TCTTGTTGTTGGAATACCAA+TGG | 0.606269 | 4_2:-74940891 | Msa0622520:CDS |
| CGTCAGAACCAAAACATCGA+TGG | 0.613145 | 4_2:+74938882 | None:intergenic |
| ACCACAAGATCCACGCCCAA+AGG | 0.613248 | 4_2:+74940851 | None:intergenic |
| TAGGCTATGGTTCTGTAAGG+TGG | 0.613388 | 4_2:-74941162 | Msa0622520:CDS |
| GTACAAAGTTATTGTAGCAG+TGG | 0.621495 | 4_2:-74941209 | Msa0622520:CDS |
| AAACCAAATACAGTCAGACT+TGG | 0.623723 | 4_2:+74940173 | None:intergenic |
| ACTAGCCTTCGGTTTCAAAG+TGG | 0.629563 | 4_2:+74940739 | None:intergenic |
| TATAACCACTTTGAAACCGA+AGG | 0.633348 | 4_2:-74940744 | Msa0622520:CDS |
| AGAATACGAACTTCATGCCG+AGG | 0.640048 | 4_2:-74939390 | Msa0622520:CDS |
| AAGCTTACCCATACTAAACA+TGG | 0.644081 | 4_2:+74940359 | None:intergenic |
| GAACTTCTTATTTATAGGCG+CGG | 0.645236 | 4_2:-74941029 | Msa0622520:CDS |
| AATGCCAATGACACAACCAT+AGG | 0.648775 | 4_2:+74940577 | None:intergenic |
| AGGTGAAGAAAATAAAGATG+TGG | 0.654182 | 4_2:-74940693 | Msa0622520:CDS |
| TTACGCAGTGCTAAGAACCT+CGG | 0.657922 | 4_2:+74939373 | None:intergenic |
| ATCGAAGCTAATCATTGTCG+CGG | 0.678060 | 4_2:-74940999 | Msa0622520:CDS |
| AATTGCCAAGTATGGTAGAG+GGG | 0.692420 | 4_2:-74940419 | Msa0622520:CDS |
| GATGTGCGCGGTGAACTCGA+AGG | 0.703238 | 4_2:+74941066 | None:intergenic |
| CTTAAAAGGATCGATGTGCG+CGG | 0.711568 | 4_2:+74941054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAAAAAAATGATT+GGG | - | chr4_2:74938905-74938924 | Msa0622520:three_prime_UTR | 10.0% |
| !!! | TATATTAATTTTCAAATGTT+TGG | - | chr4_2:74940960-74940979 | Msa0622520:CDS | 10.0% |
| !! | GAAAACTAAAAAAAAATGAT+TGG | - | chr4_2:74938904-74938923 | Msa0622520:three_prime_UTR | 15.0% |
| !! | AAAATAAATAACCTGAATTA+TGG | + | chr4_2:74940084-74940103 | None:intergenic | 15.0% |
| !! | AATAAGAAGTTCATCTTAAA+AGG | + | chr4_2:74939111-74939130 | None:intergenic | 20.0% |
| !!! | AAGATGAACTTCTTATTTAT+AGG | - | chr4_2:74939114-74939133 | Msa0622520:CDS | 20.0% |
| !! | ACTATTATTAGCATTAAACA+TGG | - | chr4_2:74939848-74939867 | Msa0622520:intron | 20.0% |
| !! | AAATCTCTAAATATTACAAG+AGG | - | chr4_2:74940153-74940172 | Msa0622520:CDS | 20.0% |
| !!! | CATATGTAGATTTGTTAAAA+TGG | - | chr4_2:74940443-74940462 | Msa0622520:intron | 20.0% |
| !!! | AATGGATTAGCTAATATTTT+AGG | - | chr4_2:74940461-74940480 | Msa0622520:intron | 20.0% |
| !!! | TTTGAAATTTATCTCTAGAA+CGG | + | chr4_2:74940520-74940539 | None:intergenic | 20.0% |
| !! | ATGACAATGCATAAAATAAA+TGG | + | chr4_2:74940595-74940614 | None:intergenic | 20.0% |
| !!! | CACATTTTTTGTGTTTTTAA+AGG | - | chr4_2:74940640-74940659 | Msa0622520:CDS | 20.0% |
| !!! | ATACCATTTTTGAAACTTAA+GGG | - | chr4_2:74941075-74941094 | Msa0622520:CDS | 20.0% |
| !! | TCAATTTGAAAAAGAAACTT+TGG | + | chr4_2:74941121-74941140 | None:intergenic | 20.0% |
| !!! | TTTTGATTATAGTTTCTGTT+AGG | - | chr4_2:74941199-74941218 | Msa0622520:CDS | 20.0% |
| !! | TAGTTTTCTTTTCTTTTGTG+TGG | + | chr4_2:74938892-74938911 | None:intergenic | 25.0% |
| ! | ACTAAAAAAAAATGATTGGG+TGG | - | chr4_2:74938908-74938927 | Msa0622520:three_prime_UTR | 25.0% |
| ! | CTAAAAAAAAATGATTGGGT+GGG | - | chr4_2:74938909-74938928 | Msa0622520:three_prime_UTR | 25.0% |
| ! | AATATTAGTGCAAAATAGAG+TGG | + | chr4_2:74938967-74938986 | None:intergenic | 25.0% |
| !! | CTCTATTTTGCACTAATATT+AGG | - | chr4_2:74938967-74938986 | Msa0622520:three_prime_UTR | 25.0% |
| ! | ATTAGTAATGTAACATGTGA+AGG | - | chr4_2:74939435-74939454 | Msa0622520:intron | 25.0% |
| ! | TATTAGCATTAAACATGGTT+AGG | - | chr4_2:74939853-74939872 | Msa0622520:intron | 25.0% |
| ! | ATTAGCATTAAACATGGTTA+GGG | - | chr4_2:74939854-74939873 | Msa0622520:intron | 25.0% |
| ! | ATTGTCTTTACTAAAGAAAG+AGG | + | chr4_2:74940244-74940263 | None:intergenic | 25.0% |
| !! | AATCATATGAATGATTTGGA+TGG | + | chr4_2:74940357-74940376 | None:intergenic | 25.0% |
| ! | GTTGAATCATATGAATGATT+TGG | + | chr4_2:74940361-74940380 | None:intergenic | 25.0% |
| ! | TTAACAAATCTACATATGAG+TGG | + | chr4_2:74940441-74940460 | None:intergenic | 25.0% |
| !!! | GATTAGCTAATATTTTAGGA+TGG | - | chr4_2:74940465-74940484 | Msa0622520:intron | 25.0% |
| !!! | CATTTTTTGTGTTTTTTCTG+TGG | - | chr4_2:74940543-74940562 | Msa0622520:intron | 25.0% |
| ! | CAATGCATAAAATAAATGGA+AGG | + | chr4_2:74940591-74940610 | None:intergenic | 25.0% |
| ! | GTATTCTTTAGCAAAAATGA+AGG | + | chr4_2:74940745-74940764 | None:intergenic | 25.0% |
| ! | ATTTCTACAATGTTCAAGAA+TGG | - | chr4_2:74940805-74940824 | Msa0622520:CDS | 25.0% |
| !!! | GATACCATTTTTGAAACTTA+AGG | - | chr4_2:74941074-74941093 | Msa0622520:CDS | 25.0% |
| ! | TAACCCTTAAGTTTCAAAAA+TGG | + | chr4_2:74941081-74941100 | None:intergenic | 25.0% |
| !!! | AAGGTTTTGTTACATTTAGT+GGG | + | chr4_2:74941242-74941261 | None:intergenic | 25.0% |
| ATATGTGTTGTGCAAGAAAT+TGG | - | chr4_2:74938845-74938864 | Msa0622520:three_prime_UTR | 30.0% | |
| TTTGCACTAATATTAGGCTA+TGG | - | chr4_2:74938973-74938992 | Msa0622520:three_prime_UTR | 30.0% | |
| GTAGCAAAGTAAGTTATTCT+TGG | - | chr4_2:74939196-74939215 | Msa0622520:intron | 30.0% | |
| ! | CTAACAAATTCTCTTGTTGT+TGG | - | chr4_2:74939246-74939265 | Msa0622520:intron | 30.0% |
| AGGTGAAGAAAATAAAGATG+TGG | - | chr4_2:74939455-74939474 | Msa0622520:intron | 30.0% | |
| ATAGCAAATCCAAATTCCTA+TGG | - | chr4_2:74939555-74939574 | Msa0622520:intron | 30.0% | |
| TCTCACATATATATACATGC+AGG | - | chr4_2:74939696-74939715 | Msa0622520:intron | 30.0% | |
| GTCTATATTGATCATGTCAA+AGG | - | chr4_2:74939751-74939770 | Msa0622520:intron | 30.0% | |
| !! | TATATGTGATGTGTTGATTC+AGG | - | chr4_2:74939912-74939931 | Msa0622520:intron | 30.0% |
| !!! | TGTTGATTCAGGTATTTTCA+TGG | - | chr4_2:74939923-74939942 | Msa0622520:intron | 30.0% |
| !!! | TTGGTTTTAAAGTTCATTGC+TGG | - | chr4_2:74939996-74940015 | Msa0622520:intron | 30.0% |
| TTTACGAATTGCCATAATTC+AGG | - | chr4_2:74940070-74940089 | Msa0622520:intron | 30.0% | |
| GTGTGAAAGGATGATATATA+TGG | + | chr4_2:74940122-74940141 | None:intergenic | 30.0% | |
| ATCCTTTCACACACTAAAAA+AGG | - | chr4_2:74940130-74940149 | Msa0622520:CDS | 30.0% | |
| !!! | TTCCTTTTTTAGTGTGTGAA+AGG | + | chr4_2:74940135-74940154 | None:intergenic | 30.0% |
| ! | GATTTTGTCTATGCTATAAG+TGG | + | chr4_2:74940222-74940241 | None:intergenic | 30.0% |
| !!! | GTTTTTGGCAAAAACAAAAG+AGG | + | chr4_2:74940269-74940288 | None:intergenic | 30.0% |
| !!! | ATAGTTTTTGGCAATGGAAA+TGG | + | chr4_2:74940291-74940310 | None:intergenic | 30.0% |
| !!! | TCACAAATAGTTTTTGGCAA+TGG | + | chr4_2:74940297-74940316 | None:intergenic | 30.0% |
| !! | TTTGTTTATTTATTCGGTGC+AGG | - | chr4_2:74940695-74940714 | Msa0622520:CDS | 30.0% |
| CTTAAGGGTTAAAGTTAAGA+AGG | - | chr4_2:74941090-74941109 | Msa0622520:CDS | 30.0% | |
| TATAGTTTCTGTTAGGTAGT+TGG | - | chr4_2:74941206-74941225 | Msa0622520:CDS | 30.0% | |
| !!! | CAAGGTTTTGTTACATTTAG+TGG | + | chr4_2:74941243-74941262 | None:intergenic | 30.0% |
| GTACAAAGTTATTGTAGCAG+TGG | - | chr4_2:74938939-74938958 | Msa0622520:three_prime_UTR | 35.0% | |
| ! | TATTAGGCTATGGTTCTGTA+AGG | - | chr4_2:74938983-74939002 | Msa0622520:three_prime_UTR | 35.0% |
| ! | GAACTTCTTATTTATAGGCG+CGG | - | chr4_2:74939119-74939138 | Msa0622520:CDS | 35.0% |
| !! | TCTTGTTGTTGGAATACCAA+TGG | - | chr4_2:74939257-74939276 | Msa0622520:intron | 35.0% |
| AAACCTATGTATGGACCTTT+GGG | - | chr4_2:74939282-74939301 | Msa0622520:intron | 35.0% | |
| CGGTTGTTCAAGCTATTATA+TGG | - | chr4_2:74939328-74939347 | Msa0622520:intron | 35.0% | |
| CACTTTGCTTCTATTTGTGT+TGG | - | chr4_2:74939353-74939372 | Msa0622520:intron | 35.0% | |
| TGTGTTGGAGTTTAGAAGAA+CGG | - | chr4_2:74939368-74939387 | Msa0622520:intron | 35.0% | |
| TTTAGAAGAACGGGAATAGA+GGG | - | chr4_2:74939378-74939397 | Msa0622520:CDS | 35.0% | |
| !! | TATAACCACTTTGAAACCGA+AGG | - | chr4_2:74939404-74939423 | Msa0622520:CDS | 35.0% |
| !! | TTACTAATGCTACTAGCCTT+CGG | + | chr4_2:74939423-74939442 | None:intergenic | 35.0% |
| ATGACACAACCATAGGAATT+TGG | + | chr4_2:74939567-74939586 | None:intergenic | 35.0% | |
| AATTCCTATGGTTGTGTCAT+TGG | - | chr4_2:74939567-74939586 | Msa0622520:intron | 35.0% | |
| ! | TTGTGTCATTGGCATTTCAT+GGG | - | chr4_2:74939578-74939597 | Msa0622520:intron | 35.0% |
| CATGGGCTTTCATATCTAAT+AGG | - | chr4_2:74939595-74939614 | Msa0622520:intron | 35.0% | |
| GTATGTGATTGAGTGTAATG+TGG | - | chr4_2:74939673-74939692 | Msa0622520:intron | 35.0% | |
| CACATATATATACATGCAGG+TGG | - | chr4_2:74939699-74939718 | Msa0622520:intron | 35.0% | |
| ATATACATGCAGGTGGAATT+TGG | - | chr4_2:74939706-74939725 | Msa0622520:intron | 35.0% | |
| ! | GAATTTGGAATTGCCAAGTA+TGG | - | chr4_2:74939721-74939740 | Msa0622520:intron | 35.0% |
| ATATTGATCATGTCAAAGGC+TGG | - | chr4_2:74939755-74939774 | Msa0622520:intron | 35.0% | |
| AAGCTTACCCATACTAAACA+TGG | + | chr4_2:74939792-74939811 | None:intergenic | 35.0% | |
| AAACCAAATACAGTCAGACT+TGG | + | chr4_2:74939978-74939997 | None:intergenic | 35.0% | |
| AAGTCTGACTGTATTTGGTT+TGG | - | chr4_2:74939977-74939996 | Msa0622520:intron | 35.0% | |
| GCTATTAGTGCTTTCATTGT+TGG | - | chr4_2:74940032-74940051 | Msa0622520:intron | 35.0% | |
| TACAAGAGGCTACAATCTTA+TGG | - | chr4_2:74940167-74940186 | Msa0622520:CDS | 35.0% | |
| ACAAGAGGCTACAATCTTAT+GGG | - | chr4_2:74940168-74940187 | Msa0622520:CDS | 35.0% | |
| ! | TTGGCAATGGAAATGGTTTT+TGG | + | chr4_2:74940284-74940303 | None:intergenic | 35.0% |
| ! | CGAGCTTCACAAATAGTTTT+TGG | + | chr4_2:74940303-74940322 | None:intergenic | 35.0% |
| ! | CATATGAATGATTTGGATGG+TGG | + | chr4_2:74940354-74940373 | None:intergenic | 35.0% |
| TCATGTGAGCTTAGTTTAGT+TGG | + | chr4_2:74940620-74940639 | None:intergenic | 35.0% | |
| AGCAAAAATGAAGGATGTGA+TGG | + | chr4_2:74940736-74940755 | None:intergenic | 35.0% | |
| TCAAATGTTTGGTCTCTTAC+AGG | - | chr4_2:74940971-74940990 | Msa0622520:CDS | 35.0% | |
| CAAATGTTTGGTCTCTTACA+GGG | - | chr4_2:74940972-74940991 | Msa0622520:CDS | 35.0% | |
| AAACTCCAATATTGCGTAGT+AGG | + | chr4_2:74941037-74941056 | None:intergenic | 35.0% | |
| GCATATATCCATGATGCATT+TGG | + | chr4_2:74941164-74941183 | None:intergenic | 35.0% | |
| TGTGTTGTGCAAGAAATTGG+AGG | - | chr4_2:74938848-74938867 | Msa0622520:three_prime_UTR | 40.0% | |
| ATCGAAGCTAATCATTGTCG+CGG | - | chr4_2:74939149-74939168 | Msa0622520:CDS | 40.0% | |
| CCATACATAGGTTTCACCAT+TGG | + | chr4_2:74939276-74939295 | None:intergenic | 40.0% | |
| CCAATGGTGAAACCTATGTA+TGG | - | chr4_2:74939273-74939292 | Msa0622520:intron | 40.0% | |
| GAAACCTATGTATGGACCTT+TGG | - | chr4_2:74939281-74939300 | Msa0622520:intron | 40.0% | |
| GTGTTGGAGTTTAGAAGAAC+GGG | - | chr4_2:74939369-74939388 | Msa0622520:intron | 40.0% | |
| GTTTAGAAGAACGGGAATAG+AGG | - | chr4_2:74939377-74939396 | Msa0622520:CDS | 40.0% | |
| CGCTTCATCAATTGGAAGAA+AGG | + | chr4_2:74939519-74939538 | None:intergenic | 40.0% | |
| AATGCCAATGACACAACCAT+AGG | + | chr4_2:74939574-74939593 | None:intergenic | 40.0% | |
| ! | GTTGTGTCATTGGCATTTCA+TGG | - | chr4_2:74939577-74939596 | Msa0622520:intron | 40.0% |
| GAATTGCCAAGTATGGTAGA+GGG | - | chr4_2:74939728-74939747 | Msa0622520:intron | 40.0% | |
| AATTGCCAAGTATGGTAGAG+GGG | - | chr4_2:74939729-74939748 | Msa0622520:intron | 40.0% | |
| CAAGAGAAAGTGATTTCGTG+TGG | - | chr4_2:74939951-74939970 | Msa0622520:intron | 40.0% | |
| ! | GAATGATTTGGATGGTGGTA+CGG | + | chr4_2:74940349-74940368 | None:intergenic | 40.0% |
| AAGGTCCAGAGTTCAAATCA+CGG | + | chr4_2:74940572-74940591 | None:intergenic | 40.0% | |
| !! | ATGAAGGATGTGATGGATTG+TGG | + | chr4_2:74940729-74940748 | None:intergenic | 40.0% |
| AGTAGCCTACTACGCAATAT+TGG | - | chr4_2:74941029-74941048 | Msa0622520:CDS | 40.0% | |
| CCATGATGCATTTGGATTAC+TGG | + | chr4_2:74941156-74941175 | None:intergenic | 40.0% | |
| CCAGTAATCCAAATGCATCA+TGG | - | chr4_2:74941153-74941172 | Msa0622520:CDS | 40.0% | |
| CCAAAACATCGATGGTTTCA+AGG | + | chr4_2:74941261-74941280 | None:intergenic | 40.0% | |
| ! | CCTTGAAACCATCGATGTTT+TGG | - | chr4_2:74941258-74941277 | Msa0622520:five_prime_UTR | 40.0% |
| ! | TAGGCTATGGTTCTGTAAGG+TGG | - | chr4_2:74938986-74939005 | Msa0622520:three_prime_UTR | 45.0% |
| CTTAAAAGGATCGATGTGCG+CGG | + | chr4_2:74939097-74939116 | None:intergenic | 45.0% | |
| GCTACTACACTTAGCCCAAA+GGG | + | chr4_2:74939181-74939200 | None:intergenic | 45.0% | |
| TGCTACTACACTTAGCCCAA+AGG | + | chr4_2:74939182-74939201 | None:intergenic | 45.0% | |
| GGATCTTGTGGTTCAAGCTT+CGG | - | chr4_2:74939308-74939327 | Msa0622520:intron | 45.0% | |
| !! | ACTAGCCTTCGGTTTCAAAG+TGG | + | chr4_2:74939412-74939431 | None:intergenic | 45.0% |
| TCCAATTGATGAAGCGTGTG+TGG | - | chr4_2:74939523-74939542 | Msa0622520:intron | 45.0% | |
| GGAATTGCCAAGTATGGTAG+AGG | - | chr4_2:74939727-74939746 | Msa0622520:intron | 45.0% | |
| ATAGACCCCTCTACCATACT+TGG | + | chr4_2:74939737-74939756 | None:intergenic | 45.0% | |
| GATCATGTCAAAGGCTGGAA+CGG | - | chr4_2:74939760-74939779 | Msa0622520:intron | 45.0% | |
| ATCATGTCAAAGGCTGGAAC+GGG | - | chr4_2:74939761-74939780 | Msa0622520:intron | 45.0% | |
| GGCACTGCCATGTTTAGTAT+GGG | - | chr4_2:74939782-74939801 | Msa0622520:intron | 45.0% | |
| GGACCAAGTCTGACTGTATT+TGG | - | chr4_2:74939972-74939991 | Msa0622520:intron | 45.0% | |
| GCTTTCATTGTTGGATTGCG+TGG | - | chr4_2:74940041-74940060 | Msa0622520:intron | 45.0% | |
| TGAGTGGAGTTAGTGATGCT+AGG | + | chr4_2:74940425-74940444 | None:intergenic | 45.0% | |
| AGAATACGAACTTCATGCCG+AGG | - | chr4_2:74940758-74940777 | Msa0622520:CDS | 45.0% | |
| TTACGCAGTGCTAAGAACCT+CGG | + | chr4_2:74940778-74940797 | None:intergenic | 45.0% | |
| GTCTCTTACAGGGTGATCTT+TGG | - | chr4_2:74940982-74941001 | Msa0622520:CDS | 45.0% | |
| GCGTAGTAGGCTACTAAGAT+CGG | + | chr4_2:74941024-74941043 | None:intergenic | 45.0% | |
| CGTCAGAACCAAAACATCGA+TGG | + | chr4_2:74941269-74941288 | None:intergenic | 45.0% | |
| !!! | AATTATTTTGTTTATTTATT+CGG | - | chr4_2:74940689-74940708 | Msa0622520:CDS | 5.0% |
| ! | GCTATGGTTCTGTAAGGTGG+TGG | - | chr4_2:74938989-74939008 | Msa0622520:three_prime_UTR | 50.0% |
| ACGCCCAAAGGTCCATACAT+AGG | + | chr4_2:74939288-74939307 | None:intergenic | 50.0% | |
| TATGTATGGACCTTTGGGCG+TGG | - | chr4_2:74939287-74939306 | Msa0622520:intron | 50.0% | |
| GCCACACACGCTTCATCAAT+TGG | + | chr4_2:74939527-74939546 | None:intergenic | 50.0% | |
| ! | GGGCACTGCCATGTTTAGTA+TGG | - | chr4_2:74939781-74939800 | Msa0622520:intron | 50.0% |
| GCACTAATAGCCATTGCTGC+TGG | + | chr4_2:74940023-74940042 | None:intergenic | 50.0% | |
| GGTGTCCGTGATTTGAACTC+TGG | - | chr4_2:74940564-74940583 | Msa0622520:CDS | 50.0% | |
| GTGAACTCGAAGGCGAAGAG+TGG | + | chr4_2:74939075-74939094 | None:intergenic | 55.0% | |
| TTGTCGCGGTGATTGCCCTT+TGG | - | chr4_2:74939163-74939182 | Msa0622520:intron | 55.0% | |
| TGTCGCGGTGATTGCCCTTT+GGG | - | chr4_2:74939164-74939183 | Msa0622520:intron | 55.0% | |
| ACCTTTGGGCGTGGATCTTG+TGG | - | chr4_2:74939296-74939315 | Msa0622520:intron | 55.0% | |
| ACCACAAGATCCACGCCCAA+AGG | + | chr4_2:74939300-74939319 | None:intergenic | 55.0% | |
| CATTGCTGGACCAGCAGCAA+TGG | - | chr4_2:74940010-74940029 | Msa0622520:intron | 55.0% | |
| GATGTGCGCGGTGAACTCGA+AGG | + | chr4_2:74939085-74939104 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74938823 | 74941347 | 74938823 | ID=Msa0622520;Name=Msa0622520 |
| chr4_2 | mRNA | 74938823 | 74941347 | 74938823 | ID=Msa0622520-mRNA-1;Parent=Msa0622520;Name=Msa0622520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=96|1|1|1|1|1|5|282|363 |
| chr4_2 | exon | 74938823 | 74939177 | 74938823 | ID=Msa0622520-mRNA-1:exon:22725;Parent=Msa0622520-mRNA-1 |
| chr4_2 | exon | 74939377 | 74939453 | 74939377 | ID=Msa0622520-mRNA-1:exon:22724;Parent=Msa0622520-mRNA-1 |
| chr4_2 | exon | 74940079 | 74940236 | 74940079 | ID=Msa0622520-mRNA-1:exon:22723;Parent=Msa0622520-mRNA-1 |
| chr4_2 | exon | 74940367 | 74940452 | 74940367 | ID=Msa0622520-mRNA-1:exon:22722;Parent=Msa0622520-mRNA-1 |
| chr4_2 | exon | 74940554 | 74941347 | 74940554 | ID=Msa0622520-mRNA-1:exon:22721;Parent=Msa0622520-mRNA-1 |
| chr4_2 | five_prime_UTR | 74941252 | 74941347 | 74941252 | ID=Msa0622520-mRNA-1:five_prime_utr;Parent=Msa0622520-mRNA-1 |
| chr4_2 | CDS | 74940554 | 74941251 | 74940554 | ID=Msa0622520-mRNA-1:cds;Parent=Msa0622520-mRNA-1 |
| chr4_2 | CDS | 74940367 | 74940452 | 74940367 | ID=Msa0622520-mRNA-1:cds;Parent=Msa0622520-mRNA-1 |
| chr4_2 | CDS | 74940079 | 74940236 | 74940079 | ID=Msa0622520-mRNA-1:cds;Parent=Msa0622520-mRNA-1 |
| chr4_2 | CDS | 74939377 | 74939453 | 74939377 | ID=Msa0622520-mRNA-1:cds;Parent=Msa0622520-mRNA-1 |
| chr4_2 | CDS | 74939105 | 74939177 | 74939105 | ID=Msa0622520-mRNA-1:cds;Parent=Msa0622520-mRNA-1 |
| chr4_2 | three_prime_UTR | 74938823 | 74939104 | 74938823 | ID=Msa0622520-mRNA-1:three_prime_utr;Parent=Msa0622520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
