AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1115860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115860 MtrunA17_Chr7g0258191 94.561 239 12 1 1 239 1 238 4.12e-154 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1115860 AT2G42260.2 39.326 267 126 8 1 239 1 259 9.48e-38 133
Msa1115860 AT2G42260.1 39.326 267 126 8 1 239 1 259 9.48e-38 133
Msa1115860 AT3G57860.1 40.234 256 123 10 1 239 1 243 3.15e-37 131

Find 93 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCTTCTGATGATTTCT+AGG 0.220813 7_3:+63395780 Msa1115860:three_prime_UTR
TTCAGCTTGATGCAGGATTT+TGG 0.284785 7_3:-63395440 None:intergenic
GGAGATGAAGAAGACCTATT+TGG 0.288155 7_3:-63393879 None:intergenic
AGCAAATGGGAAAGGAGATT+TGG 0.297139 7_3:+63395747 Msa1115860:three_prime_UTR
TTGATTAAGAGAAAAGAAAT+AGG 0.317101 7_3:-63395989 None:intergenic
TTTCTCTTAATCAAATTGTT+TGG 0.327945 7_3:+63395998 Msa1115860:three_prime_UTR
GCTTCATTCTCTGCTGCTAC+TGG 0.357062 7_3:+63395389 Msa1115860:CDS
TGAGGTTCGTTAGTGTGGTT+AGG 0.363912 7_3:-63393943 None:intergenic
AGGAGATATCTTAGAGCAAA+TGG 0.372197 7_3:+63395733 Msa1115860:three_prime_UTR
ATCAAGCTGAAAACACCTTA+TGG 0.387510 7_3:+63395452 Msa1115860:CDS
ACGCGGCGGTCTCGTGCTTC+CGG 0.391950 7_3:-63394070 None:intergenic
TGAGAGAAGGAGGGAGAGAC+AGG 0.393153 7_3:+63395298 Msa1115860:CDS
AAGTAGAAGATTACACAAAC+TGG 0.401114 7_3:-63395839 None:intergenic
TTTGGAACTTTACTTCCATA+AGG 0.419855 7_3:-63395467 None:intergenic
GCAAATGGGAAAGGAGATTT+GGG 0.422325 7_3:+63395748 Msa1115860:three_prime_UTR
TTTAGGCGATTGAGAGAAGG+AGG 0.446441 7_3:+63395288 Msa1115860:intron
TGCGCGTCGTTCTCCAGGTT+CGG 0.449151 7_3:+63394249 Msa1115860:CDS
ATATCCTGCAACGGCGTCCT+CGG 0.451746 7_3:-63394352 None:intergenic
GTACCCGAGGACGCCGTTGC+AGG 0.452614 7_3:+63394348 Msa1115860:CDS
ACTGAGGAAATTGAGCAAAC+TGG 0.455510 7_3:+63395323 Msa1115860:CDS
CGATCTGAACCGGCGGTGAA+TGG 0.459393 7_3:-63394184 None:intergenic
ACGAGCAACTTCGCGACGTA+CGG 0.459911 7_3:-63394227 None:intergenic
GGGTTTGAATAGAATGAAGT+AGG 0.460822 7_3:-63393982 None:intergenic
GCGGTGAATGGAGCGGGTGC+AGG 0.472928 7_3:-63394172 None:intergenic
TCTTGAATCACGGCGGAGAA+AGG 0.474672 7_3:-63394127 None:intergenic
GAGGTTCGTTAGTGTGGTTA+GGG 0.474844 7_3:-63393942 None:intergenic
ATCGAAGGGTAGCATAGGAT+TGG 0.475974 7_3:-63393901 None:intergenic
ATCTTCTTCAATTCACCTCA+TGG 0.478558 7_3:-63395678 None:intergenic
AGTGAAGAACCGATCTGAAC+CGG 0.482402 7_3:-63394194 None:intergenic
GAGTGAGAAACTAGAGAATG+AGG 0.484691 7_3:-63394016 None:intergenic
TCATCTTCTGATGATTTCTA+GGG 0.484946 7_3:+63395781 Msa1115860:three_prime_UTR
GTGTTTAGGCGATTGAGAGA+AGG 0.495099 7_3:+63395285 Msa1115860:intron
CAGAACATCAGAAAAGGGTT+AGG 0.496050 7_3:+63395645 Msa1115860:CDS
AAACTTCCTGCTGCTGAAGA+TGG 0.501739 7_3:+63395509 Msa1115860:CDS
GATTCACCATCTTCAGCAGC+AGG 0.505435 7_3:-63395515 None:intergenic
TATCCTGCAACGGCGTCCTC+GGG 0.507871 7_3:-63394351 None:intergenic
GAACCGGCGGTGAATGGAGC+GGG 0.509648 7_3:-63394178 None:intergenic
TTCAGCTGGTTAGCATGAAC+TGG 0.509893 7_3:-63395350 None:intergenic
AACGGCGAAGAGAGAGAAAG+AGG 0.513945 7_3:-63394038 None:intergenic
AAGTGGGAAAGCAGAGAACT+TGG 0.515899 7_3:+63395808 Msa1115860:three_prime_UTR
AGTAGTGAGGTTCGTTAGTG+TGG 0.517658 7_3:-63393948 None:intergenic
GGAGATATCTTAGAGCAAAT+GGG 0.522905 7_3:+63395734 Msa1115860:three_prime_UTR
TCGAAGGGTAGCATAGGATT+GGG 0.526008 7_3:-63393900 None:intergenic
TGATTTAGGTTCGGGATCGA+AGG 0.528856 7_3:-63393916 None:intergenic
AAAAGCAGAACATCAGAAAA+GGG 0.528951 7_3:+63395640 Msa1115860:CDS
TTGAAGAAGATTTCAAGTGC+AGG 0.531126 7_3:+63395690 Msa1115860:three_prime_UTR
GTAGCAGCAGAGAATGAAGC+TGG 0.533970 7_3:-63395386 None:intergenic
ACACGGCGAGTGGTGGTTGG+AGG 0.537853 7_3:-63394280 None:intergenic
GATCAGAGAAAATGTTCAGC+TGG 0.541232 7_3:-63395364 None:intergenic
CGAGGAGTGTACTTCCGTCT+TGG 0.543666 7_3:+63394326 Msa1115860:CDS
CTTACACGGCGAGTGGTGGT+TGG 0.551209 7_3:-63394283 None:intergenic
CGAGCAACTTCGCGACGTAC+GGG 0.553693 7_3:-63394226 None:intergenic
TCTTCTTACACGGCGAGTGG+TGG 0.565700 7_3:-63394287 None:intergenic
CTTCGCCGTTCATACTATGC+CGG 0.566266 7_3:+63394051 Msa1115860:exon
AATTCACCTCATGGACATCA+AGG 0.566381 7_3:-63395669 None:intergenic
TTAGGCGATTGAGAGAAGGA+GGG 0.570115 7_3:+63395289 Msa1115860:intron
ACCACTCGCCGTGTAAGAAG+AGG 0.576700 7_3:+63394289 Msa1115860:CDS
CATTCACCGCCGGTTCAGAT+CGG 0.577297 7_3:+63394185 Msa1115860:CDS
AATAGAGTATCCACGTCAAG+AGG 0.577745 7_3:-63394097 None:intergenic
CCGCGTCATCCCTCTTGACG+TGG 0.577863 7_3:+63394087 Msa1115860:CDS
GGTTCGTATTTGTAGTAGTG+AGG 0.582283 7_3:-63393961 None:intergenic
CATCAAAGAATGATGATGCA+AGG 0.582864 7_3:-63395894 None:intergenic
TATCTTAGAGCAAATGGGAA+AGG 0.583358 7_3:+63395739 Msa1115860:three_prime_UTR
TGGAGCGGGTGCAGGTGTAA+CGG 0.585593 7_3:-63394164 None:intergenic
GAATGCAACAGCTTCTTCTG+AGG 0.588701 7_3:-63395551 None:intergenic
GAGAATGAGGAAATTCTGAG+AGG 0.593794 7_3:-63394003 None:intergenic
GCCTCTTCTTACACGGCGAG+TGG 0.594251 7_3:-63394290 None:intergenic
TGCTTCCGGCATAGTATGAA+CGG 0.594718 7_3:-63394056 None:intergenic
CGGCTCAGATTCTTGAATCA+CGG 0.600207 7_3:-63394137 None:intergenic
GATTTAGGTTCGGGATCGAA+GGG 0.601661 7_3:-63393915 None:intergenic
GAGGGAGAGACAGGGAACTG+AGG 0.604365 7_3:+63395307 Msa1115860:CDS
TCGGGATCGAAGGGTAGCAT+AGG 0.609040 7_3:-63393906 None:intergenic
AGAATGAGGAAATTCTGAGA+GGG 0.615317 7_3:-63394002 None:intergenic
ATACATTGTAATATATACAA+TGG 0.617639 7_3:-63395941 None:intergenic
GACGGAAGTACACTCCTCGA+TGG 0.619238 7_3:-63394322 None:intergenic
TGAACCGGCGGTGAATGGAG+CGG 0.620027 7_3:-63394179 None:intergenic
TACTTCCGTCTTGGTACCCG+AGG 0.623356 7_3:+63394335 Msa1115860:CDS
GGTGCAGGTGTAACGGAGAG+CGG 0.629682 7_3:-63394157 None:intergenic
GAGAGAAGGAGGGAGAGACA+GGG 0.634717 7_3:+63395299 Msa1115860:CDS
GCACCCGCTCCATTCACCGC+CGG 0.637803 7_3:+63394175 Msa1115860:CDS
CCACGTCAAGAGGGATGACG+CGG 0.645758 7_3:-63394087 None:intergenic
ATGATTTCTAGGGCTTCAAG+TGG 0.647597 7_3:+63395791 Msa1115860:three_prime_UTR
ATAGAGTATCCACGTCAAGA+GGG 0.662352 7_3:-63394096 None:intergenic
TGATTTCTAGGGCTTCAAGT+GGG 0.666884 7_3:+63395792 Msa1115860:three_prime_UTR
TCACGGCGGAGAAAGGTCGT+CGG 0.682516 7_3:-63394120 None:intergenic
ATAGCAGTGATATCCTGCAA+CGG 0.687557 7_3:-63394361 None:intergenic
GAAGAACCGATCTGAACCGG+CGG 0.705189 7_3:-63394191 None:intergenic
TAGCACGGCCTCTTCTTACA+CGG 0.717711 7_3:-63394297 None:intergenic
CGTCAAGAGGGATGACGCGG+CGG 0.719322 7_3:-63394084 None:intergenic
TTAGGACCTTGATGTCCATG+AGG 0.720116 7_3:+63395663 Msa1115860:CDS
CACTCCTCGATGGAGTAGCA+CGG 0.721208 7_3:-63394312 None:intergenic
CTCAGATTCTTGAATCACGG+CGG 0.734730 7_3:-63394134 None:intergenic
GAGGCCGTGCTACTCCATCG+AGG 0.757699 7_3:+63394308 Msa1115860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAAAATAACCAAAT+AGG + chr7_3:63393865-63393884 Msa1115860:five_prime_UTR 15.0%
!!! TTGAATTTGATTTCATTTTT+CGG + chr7_3:63394585-63394604 Msa1115860:intron 15.0%
!!! GAATTTGATTTAAATTGAAT+TGG + chr7_3:63395127-63395146 Msa1115860:intron 15.0%
!! AAAAAATTAAAGAGAATTGA+AGG + chr7_3:63395713-63395732 Msa1115860:three_prime_UTR 15.0%
!! ATACATTGTAATATATACAA+TGG - chr7_3:63395944-63395963 None:intergenic 15.0%
!!! TTTTCAAAAAATAACCAAAT+AGG + chr7_3:63393865-63393884 Msa1115860:five_prime_UTR 15.0%
!!! TTGAATTTGATTTCATTTTT+CGG + chr7_3:63394585-63394604 Msa1115860:intron 15.0%
!!! GAATTTGATTTAAATTGAAT+TGG + chr7_3:63395127-63395146 Msa1115860:intron 15.0%
!! AAAAAATTAAAGAGAATTGA+AGG + chr7_3:63395713-63395732 Msa1115860:three_prime_UTR 15.0%
!! ATACATTGTAATATATACAA+TGG - chr7_3:63395944-63395963 None:intergenic 15.0%
!! TCTCATCAAAATAGAAAAAA+CGG + chr7_3:63394419-63394438 Msa1115860:intron 20.0%
!! CGAATAAAAGATAAATAAAC+CGG - chr7_3:63394646-63394665 None:intergenic 20.0%
!!! CGGTTTATTTATCTTTTATT+CGG + chr7_3:63394644-63394663 Msa1115860:intron 20.0%
!!! GGAGAAAATTTTCATTATAA+CGG + chr7_3:63394765-63394784 Msa1115860:intron 20.0%
!!! TTGATTTGAATTGGATAAAA+CGG + chr7_3:63394834-63394853 Msa1115860:intron 20.0%
!!! AGAGAAATTTTTCTTTAGAA+CGG + chr7_3:63395062-63395081 Msa1115860:intron 20.0%
!! TTTAAATTGAATTGGCATAA+CGG + chr7_3:63395135-63395154 Msa1115860:intron 20.0%
!! ATTCTGTTAATATTGTGTTT+AGG + chr7_3:63395271-63395290 Msa1115860:intron 20.0%
!! TTGATTAAGAGAAAAGAAAT+AGG - chr7_3:63395992-63396011 None:intergenic 20.0%
!! TTTCTCTTAATCAAATTGTT+TGG + chr7_3:63395998-63396017 Msa1115860:three_prime_UTR 20.0%
!! TCTCATCAAAATAGAAAAAA+CGG + chr7_3:63394419-63394438 Msa1115860:intron 20.0%
!! CGAATAAAAGATAAATAAAC+CGG - chr7_3:63394646-63394665 None:intergenic 20.0%
!!! CGGTTTATTTATCTTTTATT+CGG + chr7_3:63394644-63394663 Msa1115860:intron 20.0%
!!! GGAGAAAATTTTCATTATAA+CGG + chr7_3:63394765-63394784 Msa1115860:intron 20.0%
!!! TTGATTTGAATTGGATAAAA+CGG + chr7_3:63394834-63394853 Msa1115860:intron 20.0%
!!! AGAGAAATTTTTCTTTAGAA+CGG + chr7_3:63395062-63395081 Msa1115860:intron 20.0%
!! TTTAAATTGAATTGGCATAA+CGG + chr7_3:63395135-63395154 Msa1115860:intron 20.0%
!! ATTCTGTTAATATTGTGTTT+AGG + chr7_3:63395271-63395290 Msa1115860:intron 20.0%
!! TTGATTAAGAGAAAAGAAAT+AGG - chr7_3:63395992-63396011 None:intergenic 20.0%
!! TTTCTCTTAATCAAATTGTT+TGG + chr7_3:63395998-63396017 Msa1115860:three_prime_UTR 20.0%
!! GGTTTTCAATTTTATCTAGA+AGG + chr7_3:63394440-63394459 Msa1115860:intron 25.0%
! CTTAATGCTTAATTGAAAAC+CGG + chr7_3:63394624-63394643 Msa1115860:intron 25.0%
!! CTTTTACTTTGCTAATATTC+TGG + chr7_3:63394732-63394751 Msa1115860:intron 25.0%
!! TAATATTCTGGTTAGCAAAT+TGG + chr7_3:63394744-63394763 Msa1115860:intron 25.0%
!!! GACTAGAATTTGATTTGAAT+TGG + chr7_3:63394825-63394844 Msa1115860:intron 25.0%
!! TGATGATTTTGTTGCAATTT+TGG + chr7_3:63395912-63395931 Msa1115860:three_prime_UTR 25.0%
!! TTTGAAAATTTAAAATGGCG+TGG - chr7_3:63393853-63393872 None:intergenic 25.0%
!! GGTTTTCAATTTTATCTAGA+AGG + chr7_3:63394440-63394459 Msa1115860:intron 25.0%
! CTTAATGCTTAATTGAAAAC+CGG + chr7_3:63394624-63394643 Msa1115860:intron 25.0%
!! CTTTTACTTTGCTAATATTC+TGG + chr7_3:63394732-63394751 Msa1115860:intron 25.0%
!! TAATATTCTGGTTAGCAAAT+TGG + chr7_3:63394744-63394763 Msa1115860:intron 25.0%
!!! GACTAGAATTTGATTTGAAT+TGG + chr7_3:63394825-63394844 Msa1115860:intron 25.0%
!! TGATGATTTTGTTGCAATTT+TGG + chr7_3:63395912-63395931 Msa1115860:three_prime_UTR 25.0%
!!! TTAGGGTTTTGATTTAGGTT+CGG - chr7_3:63393928-63393947 None:intergenic 30.0%
TATATGCGATGCTGAATATT+CGG + chr7_3:63394529-63394548 Msa1115860:intron 30.0%
! TTTGGAACTTTACTTCCATA+AGG - chr7_3:63395470-63395489 None:intergenic 30.0%
! GCAATGTCAATGATGATTTT+TGG - chr7_3:63395488-63395507 None:intergenic 30.0%
!!! TTTCTGATGTTCTGCTTTTT+TGG - chr7_3:63395639-63395658 None:intergenic 30.0%
AAAAAGCAGAACATCAGAAA+AGG + chr7_3:63395639-63395658 Msa1115860:CDS 30.0%
AAAAGCAGAACATCAGAAAA+GGG + chr7_3:63395640-63395659 Msa1115860:CDS 30.0%
ATCATCTTCTGATGATTTCT+AGG + chr7_3:63395780-63395799 Msa1115860:three_prime_UTR 30.0%
TCATCTTCTGATGATTTCTA+GGG + chr7_3:63395781-63395800 Msa1115860:three_prime_UTR 30.0%
AAGTAGAAGATTACACAAAC+TGG - chr7_3:63395842-63395861 None:intergenic 30.0%
!!! TTAGGGTTTTGATTTAGGTT+CGG - chr7_3:63393928-63393947 None:intergenic 30.0%
TATATGCGATGCTGAATATT+CGG + chr7_3:63394529-63394548 Msa1115860:intron 30.0%
! TTTGGAACTTTACTTCCATA+AGG - chr7_3:63395470-63395489 None:intergenic 30.0%
! GCAATGTCAATGATGATTTT+TGG - chr7_3:63395488-63395507 None:intergenic 30.0%
!!! TTTCTGATGTTCTGCTTTTT+TGG - chr7_3:63395639-63395658 None:intergenic 30.0%
AAAAAGCAGAACATCAGAAA+AGG + chr7_3:63395639-63395658 Msa1115860:CDS 30.0%
AAAAGCAGAACATCAGAAAA+GGG + chr7_3:63395640-63395659 Msa1115860:CDS 30.0%
ATCATCTTCTGATGATTTCT+AGG + chr7_3:63395780-63395799 Msa1115860:three_prime_UTR 30.0%
TCATCTTCTGATGATTTCTA+GGG + chr7_3:63395781-63395800 Msa1115860:three_prime_UTR 30.0%
AAGTAGAAGATTACACAAAC+TGG - chr7_3:63395842-63395861 None:intergenic 30.0%
!!! TAGGGTTTTGATTTAGGTTC+GGG - chr7_3:63393927-63393946 None:intergenic 35.0%
!!! TGTGGTTAGGGTTTTGATTT+AGG - chr7_3:63393933-63393952 None:intergenic 35.0%
GGGTTTGAATAGAATGAAGT+AGG - chr7_3:63393985-63394004 None:intergenic 35.0%
! AGAATGAGGAAATTCTGAGA+GGG - chr7_3:63394005-63394024 None:intergenic 35.0%
!! AGGATTTTGGTGATTTCTTG+TGG - chr7_3:63395430-63395449 None:intergenic 35.0%
ATCAAGCTGAAAACACCTTA+TGG + chr7_3:63395452-63395471 Msa1115860:CDS 35.0%
ATCTTCTTCAATTCACCTCA+TGG - chr7_3:63395681-63395700 None:intergenic 35.0%
! TTGAAGAAGATTTCAAGTGC+AGG + chr7_3:63395690-63395709 Msa1115860:three_prime_UTR 35.0%
AGGAGATATCTTAGAGCAAA+TGG + chr7_3:63395733-63395752 Msa1115860:three_prime_UTR 35.0%
GGAGATATCTTAGAGCAAAT+GGG + chr7_3:63395734-63395753 Msa1115860:three_prime_UTR 35.0%
TATCTTAGAGCAAATGGGAA+AGG + chr7_3:63395739-63395758 Msa1115860:three_prime_UTR 35.0%
! CATCAAAGAATGATGATGCA+AGG - chr7_3:63395897-63395916 None:intergenic 35.0%
!!! TAGGGTTTTGATTTAGGTTC+GGG - chr7_3:63393927-63393946 None:intergenic 35.0%
!!! TGTGGTTAGGGTTTTGATTT+AGG - chr7_3:63393933-63393952 None:intergenic 35.0%
GGGTTTGAATAGAATGAAGT+AGG - chr7_3:63393985-63394004 None:intergenic 35.0%
! AGAATGAGGAAATTCTGAGA+GGG - chr7_3:63394005-63394024 None:intergenic 35.0%
!! AGGATTTTGGTGATTTCTTG+TGG - chr7_3:63395430-63395449 None:intergenic 35.0%
ATCAAGCTGAAAACACCTTA+TGG + chr7_3:63395452-63395471 Msa1115860:CDS 35.0%
ATCTTCTTCAATTCACCTCA+TGG - chr7_3:63395681-63395700 None:intergenic 35.0%
! TTGAAGAAGATTTCAAGTGC+AGG + chr7_3:63395690-63395709 Msa1115860:three_prime_UTR 35.0%
AGGAGATATCTTAGAGCAAA+TGG + chr7_3:63395733-63395752 Msa1115860:three_prime_UTR 35.0%
GGAGATATCTTAGAGCAAAT+GGG + chr7_3:63395734-63395753 Msa1115860:three_prime_UTR 35.0%
TATCTTAGAGCAAATGGGAA+AGG + chr7_3:63395739-63395758 Msa1115860:three_prime_UTR 35.0%
! CATCAAAGAATGATGATGCA+AGG - chr7_3:63395897-63395916 None:intergenic 35.0%
GGAGATGAAGAAGACCTATT+TGG - chr7_3:63393882-63393901 None:intergenic 40.0%
GGTTCGTATTTGTAGTAGTG+AGG - chr7_3:63393964-63393983 None:intergenic 40.0%
GAGAATGAGGAAATTCTGAG+AGG - chr7_3:63394006-63394025 None:intergenic 40.0%
GAGTGAGAAACTAGAGAATG+AGG - chr7_3:63394019-63394038 None:intergenic 40.0%
! ATAGAGTATCCACGTCAAGA+GGG - chr7_3:63394099-63394118 None:intergenic 40.0%
! AATAGAGTATCCACGTCAAG+AGG - chr7_3:63394100-63394119 None:intergenic 40.0%
ATAGCAGTGATATCCTGCAA+CGG - chr7_3:63394364-63394383 None:intergenic 40.0%
ACTGAGGAAATTGAGCAAAC+TGG + chr7_3:63395323-63395342 Msa1115860:CDS 40.0%
GATCAGAGAAAATGTTCAGC+TGG - chr7_3:63395367-63395386 None:intergenic 40.0%
! TTCAGCTTGATGCAGGATTT+TGG - chr7_3:63395443-63395462 None:intergenic 40.0%
!!! TTCTGCTTTTTTGGCTGTTG+GGG - chr7_3:63395630-63395649 None:intergenic 40.0%
!!! GTTCTGCTTTTTTGGCTGTT+GGG - chr7_3:63395631-63395650 None:intergenic 40.0%
!!! TGTTCTGCTTTTTTGGCTGT+TGG - chr7_3:63395632-63395651 None:intergenic 40.0%
CAGAACATCAGAAAAGGGTT+AGG + chr7_3:63395645-63395664 Msa1115860:CDS 40.0%
AATTCACCTCATGGACATCA+AGG - chr7_3:63395672-63395691 None:intergenic 40.0%
AGCAAATGGGAAAGGAGATT+TGG + chr7_3:63395747-63395766 Msa1115860:three_prime_UTR 40.0%
GCAAATGGGAAAGGAGATTT+GGG + chr7_3:63395748-63395767 Msa1115860:three_prime_UTR 40.0%
!! ATGATTTCTAGGGCTTCAAG+TGG + chr7_3:63395791-63395810 Msa1115860:three_prime_UTR 40.0%
!! TGATTTCTAGGGCTTCAAGT+GGG + chr7_3:63395792-63395811 Msa1115860:three_prime_UTR 40.0%
GGAGATGAAGAAGACCTATT+TGG - chr7_3:63393882-63393901 None:intergenic 40.0%
GGTTCGTATTTGTAGTAGTG+AGG - chr7_3:63393964-63393983 None:intergenic 40.0%
GAGAATGAGGAAATTCTGAG+AGG - chr7_3:63394006-63394025 None:intergenic 40.0%
GAGTGAGAAACTAGAGAATG+AGG - chr7_3:63394019-63394038 None:intergenic 40.0%
! ATAGAGTATCCACGTCAAGA+GGG - chr7_3:63394099-63394118 None:intergenic 40.0%
! AATAGAGTATCCACGTCAAG+AGG - chr7_3:63394100-63394119 None:intergenic 40.0%
ATAGCAGTGATATCCTGCAA+CGG - chr7_3:63394364-63394383 None:intergenic 40.0%
ACTGAGGAAATTGAGCAAAC+TGG + chr7_3:63395323-63395342 Msa1115860:CDS 40.0%
GATCAGAGAAAATGTTCAGC+TGG - chr7_3:63395367-63395386 None:intergenic 40.0%
! TTCAGCTTGATGCAGGATTT+TGG - chr7_3:63395443-63395462 None:intergenic 40.0%
!!! TTCTGCTTTTTTGGCTGTTG+GGG - chr7_3:63395630-63395649 None:intergenic 40.0%
!!! GTTCTGCTTTTTTGGCTGTT+GGG - chr7_3:63395631-63395650 None:intergenic 40.0%
!!! TGTTCTGCTTTTTTGGCTGT+TGG - chr7_3:63395632-63395651 None:intergenic 40.0%
CAGAACATCAGAAAAGGGTT+AGG + chr7_3:63395645-63395664 Msa1115860:CDS 40.0%
AATTCACCTCATGGACATCA+AGG - chr7_3:63395672-63395691 None:intergenic 40.0%
AGCAAATGGGAAAGGAGATT+TGG + chr7_3:63395747-63395766 Msa1115860:three_prime_UTR 40.0%
GCAAATGGGAAAGGAGATTT+GGG + chr7_3:63395748-63395767 Msa1115860:three_prime_UTR 40.0%
!! ATGATTTCTAGGGCTTCAAG+TGG + chr7_3:63395791-63395810 Msa1115860:three_prime_UTR 40.0%
!! TGATTTCTAGGGCTTCAAGT+GGG + chr7_3:63395792-63395811 Msa1115860:three_prime_UTR 40.0%
TCGAAGGGTAGCATAGGATT+GGG - chr7_3:63393903-63393922 None:intergenic 45.0%
ATCGAAGGGTAGCATAGGAT+TGG - chr7_3:63393904-63393923 None:intergenic 45.0%
! GATTTAGGTTCGGGATCGAA+GGG - chr7_3:63393918-63393937 None:intergenic 45.0%
! TGATTTAGGTTCGGGATCGA+AGG - chr7_3:63393919-63393938 None:intergenic 45.0%
GAGGTTCGTTAGTGTGGTTA+GGG - chr7_3:63393945-63393964 None:intergenic 45.0%
TGAGGTTCGTTAGTGTGGTT+AGG - chr7_3:63393946-63393965 None:intergenic 45.0%
AGTAGTGAGGTTCGTTAGTG+TGG - chr7_3:63393951-63393970 None:intergenic 45.0%
TGCTTCCGGCATAGTATGAA+CGG - chr7_3:63394059-63394078 None:intergenic 45.0%
CTCAGATTCTTGAATCACGG+CGG - chr7_3:63394137-63394156 None:intergenic 45.0%
CGGCTCAGATTCTTGAATCA+CGG - chr7_3:63394140-63394159 None:intergenic 45.0%
AGTGAAGAACCGATCTGAAC+CGG - chr7_3:63394197-63394216 None:intergenic 45.0%
GTGTTTAGGCGATTGAGAGA+AGG + chr7_3:63395285-63395304 Msa1115860:intron 45.0%
TTTAGGCGATTGAGAGAAGG+AGG + chr7_3:63395288-63395307 Msa1115860:intron 45.0%
TTAGGCGATTGAGAGAAGGA+GGG + chr7_3:63395289-63395308 Msa1115860:intron 45.0%
TTCAGCTGGTTAGCATGAAC+TGG - chr7_3:63395353-63395372 None:intergenic 45.0%
! AGGTGTTTTCAGCTTGATGC+AGG - chr7_3:63395450-63395469 None:intergenic 45.0%
AAACTTCCTGCTGCTGAAGA+TGG + chr7_3:63395509-63395528 Msa1115860:CDS 45.0%
GAATGCAACAGCTTCTTCTG+AGG - chr7_3:63395554-63395573 None:intergenic 45.0%
TTAGGACCTTGATGTCCATG+AGG + chr7_3:63395663-63395682 Msa1115860:CDS 45.0%
AAGTGGGAAAGCAGAGAACT+TGG + chr7_3:63395808-63395827 Msa1115860:three_prime_UTR 45.0%
TCGAAGGGTAGCATAGGATT+GGG - chr7_3:63393903-63393922 None:intergenic 45.0%
ATCGAAGGGTAGCATAGGAT+TGG - chr7_3:63393904-63393923 None:intergenic 45.0%
! GATTTAGGTTCGGGATCGAA+GGG - chr7_3:63393918-63393937 None:intergenic 45.0%
! TGATTTAGGTTCGGGATCGA+AGG - chr7_3:63393919-63393938 None:intergenic 45.0%
GAGGTTCGTTAGTGTGGTTA+GGG - chr7_3:63393945-63393964 None:intergenic 45.0%
TGAGGTTCGTTAGTGTGGTT+AGG - chr7_3:63393946-63393965 None:intergenic 45.0%
AGTAGTGAGGTTCGTTAGTG+TGG - chr7_3:63393951-63393970 None:intergenic 45.0%
TGCTTCCGGCATAGTATGAA+CGG - chr7_3:63394059-63394078 None:intergenic 45.0%
CTCAGATTCTTGAATCACGG+CGG - chr7_3:63394137-63394156 None:intergenic 45.0%
CGGCTCAGATTCTTGAATCA+CGG - chr7_3:63394140-63394159 None:intergenic 45.0%
AGTGAAGAACCGATCTGAAC+CGG - chr7_3:63394197-63394216 None:intergenic 45.0%
GTGTTTAGGCGATTGAGAGA+AGG + chr7_3:63395285-63395304 Msa1115860:intron 45.0%
TTTAGGCGATTGAGAGAAGG+AGG + chr7_3:63395288-63395307 Msa1115860:intron 45.0%
TTAGGCGATTGAGAGAAGGA+GGG + chr7_3:63395289-63395308 Msa1115860:intron 45.0%
TTCAGCTGGTTAGCATGAAC+TGG - chr7_3:63395353-63395372 None:intergenic 45.0%
! AGGTGTTTTCAGCTTGATGC+AGG - chr7_3:63395450-63395469 None:intergenic 45.0%
AAACTTCCTGCTGCTGAAGA+TGG + chr7_3:63395509-63395528 Msa1115860:CDS 45.0%
GAATGCAACAGCTTCTTCTG+AGG - chr7_3:63395554-63395573 None:intergenic 45.0%
TTAGGACCTTGATGTCCATG+AGG + chr7_3:63395663-63395682 Msa1115860:CDS 45.0%
AAGTGGGAAAGCAGAGAACT+TGG + chr7_3:63395808-63395827 Msa1115860:three_prime_UTR 45.0%
!!! TATTTTTTGAAAATTTAAAA+TGG - chr7_3:63393858-63393877 None:intergenic 5.0%
!!! TATTTTTTGAAAATTTAAAA+TGG - chr7_3:63393858-63393877 None:intergenic 5.0%
AACGGCGAAGAGAGAGAAAG+AGG - chr7_3:63394041-63394060 None:intergenic 50.0%
CTTCGCCGTTCATACTATGC+CGG + chr7_3:63394051-63394070 Msa1115860:exon 50.0%
TCTTGAATCACGGCGGAGAA+AGG - chr7_3:63394130-63394149 None:intergenic 50.0%
!!! GGAGGAGTATTTTCCGAACC+TGG - chr7_3:63394265-63394284 None:intergenic 50.0%
TAGCACGGCCTCTTCTTACA+CGG - chr7_3:63394300-63394319 None:intergenic 50.0%
GTAGCAGCAGAGAATGAAGC+TGG - chr7_3:63395389-63395408 None:intergenic 50.0%
GCTTCATTCTCTGCTGCTAC+TGG + chr7_3:63395389-63395408 Msa1115860:CDS 50.0%
GATTCACCATCTTCAGCAGC+AGG - chr7_3:63395518-63395537 None:intergenic 50.0%
AACGGCGAAGAGAGAGAAAG+AGG - chr7_3:63394041-63394060 None:intergenic 50.0%
CTTCGCCGTTCATACTATGC+CGG + chr7_3:63394051-63394070 Msa1115860:exon 50.0%
TCTTGAATCACGGCGGAGAA+AGG - chr7_3:63394130-63394149 None:intergenic 50.0%
!!! GGAGGAGTATTTTCCGAACC+TGG - chr7_3:63394265-63394284 None:intergenic 50.0%
TAGCACGGCCTCTTCTTACA+CGG - chr7_3:63394300-63394319 None:intergenic 50.0%
GTAGCAGCAGAGAATGAAGC+TGG - chr7_3:63395389-63395408 None:intergenic 50.0%
GCTTCATTCTCTGCTGCTAC+TGG + chr7_3:63395389-63395408 Msa1115860:CDS 50.0%
GATTCACCATCTTCAGCAGC+AGG - chr7_3:63395518-63395537 None:intergenic 50.0%
TCGGGATCGAAGGGTAGCAT+AGG - chr7_3:63393909-63393928 None:intergenic 55.0%
!! CATTCACCGCCGGTTCAGAT+CGG + chr7_3:63394185-63394204 Msa1115860:CDS 55.0%
GAAGAACCGATCTGAACCGG+CGG - chr7_3:63394194-63394213 None:intergenic 55.0%
ACGAGCAACTTCGCGACGTA+CGG - chr7_3:63394230-63394249 None:intergenic 55.0%
TCTTCTTACACGGCGAGTGG+TGG - chr7_3:63394290-63394309 None:intergenic 55.0%
ACCACTCGCCGTGTAAGAAG+AGG + chr7_3:63394289-63394308 Msa1115860:CDS 55.0%
CACTCCTCGATGGAGTAGCA+CGG - chr7_3:63394315-63394334 None:intergenic 55.0%
! GACGGAAGTACACTCCTCGA+TGG - chr7_3:63394325-63394344 None:intergenic 55.0%
! CGAGGAGTGTACTTCCGTCT+TGG + chr7_3:63394326-63394345 Msa1115860:CDS 55.0%
TACTTCCGTCTTGGTACCCG+AGG + chr7_3:63394335-63394354 Msa1115860:CDS 55.0%
ATATCCTGCAACGGCGTCCT+CGG - chr7_3:63394355-63394374 None:intergenic 55.0%
TGAGAGAAGGAGGGAGAGAC+AGG + chr7_3:63395298-63395317 Msa1115860:CDS 55.0%
GAGAGAAGGAGGGAGAGACA+GGG + chr7_3:63395299-63395318 Msa1115860:CDS 55.0%
TCGGGATCGAAGGGTAGCAT+AGG - chr7_3:63393909-63393928 None:intergenic 55.0%
!! CATTCACCGCCGGTTCAGAT+CGG + chr7_3:63394185-63394204 Msa1115860:CDS 55.0%
GAAGAACCGATCTGAACCGG+CGG - chr7_3:63394194-63394213 None:intergenic 55.0%
ACGAGCAACTTCGCGACGTA+CGG - chr7_3:63394230-63394249 None:intergenic 55.0%
TCTTCTTACACGGCGAGTGG+TGG - chr7_3:63394290-63394309 None:intergenic 55.0%
ACCACTCGCCGTGTAAGAAG+AGG + chr7_3:63394289-63394308 Msa1115860:CDS 55.0%
CACTCCTCGATGGAGTAGCA+CGG - chr7_3:63394315-63394334 None:intergenic 55.0%
! GACGGAAGTACACTCCTCGA+TGG - chr7_3:63394325-63394344 None:intergenic 55.0%
! CGAGGAGTGTACTTCCGTCT+TGG + chr7_3:63394326-63394345 Msa1115860:CDS 55.0%
TACTTCCGTCTTGGTACCCG+AGG + chr7_3:63394335-63394354 Msa1115860:CDS 55.0%
ATATCCTGCAACGGCGTCCT+CGG - chr7_3:63394355-63394374 None:intergenic 55.0%
TGAGAGAAGGAGGGAGAGAC+AGG + chr7_3:63395298-63395317 Msa1115860:CDS 55.0%
GAGAGAAGGAGGGAGAGACA+GGG + chr7_3:63395299-63395318 Msa1115860:CDS 55.0%
CCACGTCAAGAGGGATGACG+CGG - chr7_3:63394090-63394109 None:intergenic 60.0%
TCACGGCGGAGAAAGGTCGT+CGG - chr7_3:63394123-63394142 None:intergenic 60.0%
! GGTGCAGGTGTAACGGAGAG+CGG - chr7_3:63394160-63394179 None:intergenic 60.0%
TGGAGCGGGTGCAGGTGTAA+CGG - chr7_3:63394167-63394186 None:intergenic 60.0%
TGAACCGGCGGTGAATGGAG+CGG - chr7_3:63394182-63394201 None:intergenic 60.0%
CGATCTGAACCGGCGGTGAA+TGG - chr7_3:63394187-63394206 None:intergenic 60.0%
CGAGCAACTTCGCGACGTAC+GGG - chr7_3:63394229-63394248 None:intergenic 60.0%
TGCGCGTCGTTCTCCAGGTT+CGG + chr7_3:63394249-63394268 Msa1115860:CDS 60.0%
CTTACACGGCGAGTGGTGGT+TGG - chr7_3:63394286-63394305 None:intergenic 60.0%
GCCTCTTCTTACACGGCGAG+TGG - chr7_3:63394293-63394312 None:intergenic 60.0%
TATCCTGCAACGGCGTCCTC+GGG - chr7_3:63394354-63394373 None:intergenic 60.0%
GAGGGAGAGACAGGGAACTG+AGG + chr7_3:63395307-63395326 Msa1115860:CDS 60.0%
CCACGTCAAGAGGGATGACG+CGG - chr7_3:63394090-63394109 None:intergenic 60.0%
TCACGGCGGAGAAAGGTCGT+CGG - chr7_3:63394123-63394142 None:intergenic 60.0%
! GGTGCAGGTGTAACGGAGAG+CGG - chr7_3:63394160-63394179 None:intergenic 60.0%
TGGAGCGGGTGCAGGTGTAA+CGG - chr7_3:63394167-63394186 None:intergenic 60.0%
TGAACCGGCGGTGAATGGAG+CGG - chr7_3:63394182-63394201 None:intergenic 60.0%
CGATCTGAACCGGCGGTGAA+TGG - chr7_3:63394187-63394206 None:intergenic 60.0%
CGAGCAACTTCGCGACGTAC+GGG - chr7_3:63394229-63394248 None:intergenic 60.0%
TGCGCGTCGTTCTCCAGGTT+CGG + chr7_3:63394249-63394268 Msa1115860:CDS 60.0%
CTTACACGGCGAGTGGTGGT+TGG - chr7_3:63394286-63394305 None:intergenic 60.0%
GCCTCTTCTTACACGGCGAG+TGG - chr7_3:63394293-63394312 None:intergenic 60.0%
TATCCTGCAACGGCGTCCTC+GGG - chr7_3:63394354-63394373 None:intergenic 60.0%
GAGGGAGAGACAGGGAACTG+AGG + chr7_3:63395307-63395326 Msa1115860:CDS 60.0%
CGTCAAGAGGGATGACGCGG+CGG - chr7_3:63394087-63394106 None:intergenic 65.0%
CCGCGTCATCCCTCTTGACG+TGG + chr7_3:63394087-63394106 Msa1115860:CDS 65.0%
GAACCGGCGGTGAATGGAGC+GGG - chr7_3:63394181-63394200 None:intergenic 65.0%
ACACGGCGAGTGGTGGTTGG+AGG - chr7_3:63394283-63394302 None:intergenic 65.0%
! GAGGCCGTGCTACTCCATCG+AGG + chr7_3:63394308-63394327 Msa1115860:CDS 65.0%
GGCGTCCTCGGGTACCAAGA+CGG - chr7_3:63394343-63394362 None:intergenic 65.0%
CGTCAAGAGGGATGACGCGG+CGG - chr7_3:63394087-63394106 None:intergenic 65.0%
CCGCGTCATCCCTCTTGACG+TGG + chr7_3:63394087-63394106 Msa1115860:CDS 65.0%
GAACCGGCGGTGAATGGAGC+GGG - chr7_3:63394181-63394200 None:intergenic 65.0%
ACACGGCGAGTGGTGGTTGG+AGG - chr7_3:63394283-63394302 None:intergenic 65.0%
! GAGGCCGTGCTACTCCATCG+AGG + chr7_3:63394308-63394327 Msa1115860:CDS 65.0%
GGCGTCCTCGGGTACCAAGA+CGG - chr7_3:63394343-63394362 None:intergenic 65.0%
ACGCGGCGGTCTCGTGCTTC+CGG - chr7_3:63394073-63394092 None:intergenic 70.0%
GCGGTGAATGGAGCGGGTGC+AGG - chr7_3:63394175-63394194 None:intergenic 70.0%
GCACCCGCTCCATTCACCGC+CGG + chr7_3:63394175-63394194 Msa1115860:CDS 70.0%
GCTCGTGCGCGTCGTTCTCC+AGG + chr7_3:63394244-63394263 Msa1115860:CDS 70.0%
GTACCCGAGGACGCCGTTGC+AGG + chr7_3:63394348-63394367 Msa1115860:CDS 70.0%
ACGCGGCGGTCTCGTGCTTC+CGG - chr7_3:63394073-63394092 None:intergenic 70.0%
GCGGTGAATGGAGCGGGTGC+AGG - chr7_3:63394175-63394194 None:intergenic 70.0%
GCACCCGCTCCATTCACCGC+CGG + chr7_3:63394175-63394194 Msa1115860:CDS 70.0%
GCTCGTGCGCGTCGTTCTCC+AGG + chr7_3:63394244-63394263 Msa1115860:CDS 70.0%
GTACCCGAGGACGCCGTTGC+AGG + chr7_3:63394348-63394367 Msa1115860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63393853 63396029 63393853 ID=Msa1115860;Name=Msa1115860
chr7_3 mRNA 63393853 63396029 63393853 ID=Msa1115860-mRNA-1;Parent=Msa1115860;Name=Msa1115860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=214|1|1|1|1|1|2|341|239
chr7_3 exon 63393853 63394390 63393853 ID=Msa1115860-mRNA-1:exon:14873;Parent=Msa1115860-mRNA-1
chr7_3 exon 63395293 63396029 63395293 ID=Msa1115860-mRNA-1:exon:14874;Parent=Msa1115860-mRNA-1
chr7_3 five_prime_UTR 63393853 63394066 63393853 ID=Msa1115860-mRNA-1:five_prime_utr;Parent=Msa1115860-mRNA-1
chr7_3 CDS 63394067 63394390 63394067 ID=Msa1115860-mRNA-1:cds;Parent=Msa1115860-mRNA-1
chr7_3 CDS 63395293 63395688 63395293 ID=Msa1115860-mRNA-1:cds;Parent=Msa1115860-mRNA-1
chr7_3 three_prime_UTR 63395689 63396029 63395689 ID=Msa1115860-mRNA-1:three_prime_utr;Parent=Msa1115860-mRNA-1
Gene Sequence

>Msa1115860

ATGCCGGAAGCACGAGACCGCCGCGTCATCCCTCTTGACGTGGATACTCTATTCCGACGACCTTTCTCCGCCGTGATTCAAGAATCTGAGCCGCTCTCCGTTACACCTGCACCCGCTCCATTCACCGCCGGTTCAGATCGGTTCTTCACTGAAAGAACTCCCGTACGTCGCGAAGTTGCTCGTGCGCGTCGTTCTCCAGGTTCGGAAAATACTCCTCCAACCACCACTCGCCGTGTAAGAAGAGGCCGTGCTACTCCATCGAGGAGTGTACTTCCGTCTTGGTACCCGAGGACGCCGTTGCAGGATATCACTGCTATTGTTCGAGCGATTGAGAGAAGGAGGGAGAGACAGGGAACTGAGGAAATTGAGCAAACTGGAACACCAGTTCATGCTAACCAGCTGAACATTTTCTCTGATCCAGCTTCATTCTCTGCTGCTACTGGATCTTCTTCACGTATCCACAAGAAATCACCAAAATCCTGCATCAAGCTGAAAACACCTTATGGAAGTAAAGTTCCAAAAATCATCATTGACATTGCAAAACTTCCTGCTGCTGAAGATGGTGAATCAGAGCTTCTGACTCCTCAGAAGAAGCTGTTGCATTCAATTGATGTAATTGAACGTGAAGTGAAGCAAGAGTTGATGAAACTCAAGAGAACCCCAACAGCCAAAAAAGCAGAACATCAGAAAAGGGTTAGGACCTTGATGTCCATGAGGTGA

Protein sequence

>Msa1115860

MPEARDRRVIPLDVDTLFRRPFSAVIQESEPLSVTPAPAPFTAGSDRFFTERTPVRREVARARRSPGSENTPPTTTRRVRRGRATPSRSVLPSWYPRTPLQDITAIVRAIERRRERQGTEEIEQTGTPVHANQLNIFSDPASFSAATGSSSRIHKKSPKSCIKLKTPYGSKVPKIIIDIAKLPAAEDGESELLTPQKKLLHSIDVIEREVKQELMKLKRTPTAKKAEHQKRVRTLMSMR*