AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1372030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372030 MtrunA17_Chr5g0394281 92.473 372 7 8 1 370 1 353 0.0 647
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1372030 AT5G26230.1 46.970 330 134 8 44 355 25 331 1.43e-70 224

Find 77 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTAACCCCTGGTTTAT+TGG 0.157769 tig0019267:+159562 None:intergenic
GGAGGAAGTGGCGGAGGAGG+TGG 0.198247 tig0019267:+160351 None:intergenic
GGAAGTGGCGGAGGAGGTGG+AGG 0.258777 tig0019267:+160354 None:intergenic
GAAACACAGCTTCTCTTTCT+TGG 0.279131 tig0019267:+159743 None:intergenic
AGTGGCGGAGGAGGTGGAGG+AGG 0.348526 tig0019267:+160357 None:intergenic
AGATCTTCACCAAGTCATTC+TGG 0.364909 tig0019267:-159701 Msa1372030:CDS
GGAGGAGGAAGTGGCGGAGG+AGG 0.382522 tig0019267:+160348 None:intergenic
AACAACAGTTTCACCTTCTC+GGG 0.386923 tig0019267:+160045 None:intergenic
TAACAACAGTTTCACCTTCT+CGG 0.389271 tig0019267:+160044 None:intergenic
TTCTGGCGTTCTTTCACAAA+AGG 0.390582 tig0019267:-159684 Msa1372030:CDS
CAAAAGGGTGTTCTTCTTCG+TGG 0.404135 tig0019267:-159668 Msa1372030:CDS
AGAGAAGAAAAGAGCTGAGA+TGG 0.412803 tig0019267:-160614 Msa1372030:CDS
GAGAAGAAAAGAGCTGAGAT+GGG 0.425520 tig0019267:-160613 Msa1372030:CDS
GAAAGAAGTGGTGGAATCAT+TGG 0.430173 tig0019267:+160291 None:intergenic
AGACAAAGAGAAATACTTGT+TGG 0.431020 tig0019267:+160129 None:intergenic
CTTCTCTACCACATCATACA+TGG 0.432454 tig0019267:+160630 None:intergenic
GGAGGATTTGCGAGGTGAAA+TGG 0.432667 tig0019267:+160480 None:intergenic
AGCAGTGGAGGAGGAAGTGG+CGG 0.433040 tig0019267:+160342 None:intergenic
AGTGGAGGAGGAAGTGGCGG+AGG 0.439902 tig0019267:+160345 None:intergenic
CGTGAAGAATCACAAGAATC+AGG 0.440955 tig0019267:+160247 None:intergenic
GGGAGCAGTGGAGGAGGAAG+TGG 0.441095 tig0019267:+160339 None:intergenic
TCTTCTTCTGTTACAGAACT+TGG 0.446376 tig0019267:+160223 None:intergenic
CGCTACTACCGGTGGAATCA+CGG 0.456800 tig0019267:+160317 None:intergenic
TGAATTGGATCTAGTGTTGT+TGG 0.465264 tig0019267:+160165 None:intergenic
ATCATTGGAGGCGCTACTAC+CGG 0.488441 tig0019267:+160306 None:intergenic
AATGAGTGTTACTGCTAAAG+AGG 0.495711 tig0019267:-159987 Msa1372030:CDS
ATGAGTAATAGCACCTTGAA+TGG 0.497731 tig0019267:+159604 None:intergenic
TGTGAAAGTTTCTCGTACAA+TGG 0.500772 tig0019267:+159935 None:intergenic
GGAATCACGGGGAGCAGTGG+AGG 0.500991 tig0019267:+160330 None:intergenic
AGGTGGAGGAGGAAGAGAGA+AGG 0.508253 tig0019267:+160368 None:intergenic
GGCACTCTGCAACTCTTCCA+TGG 0.508446 tig0019267:+159625 None:intergenic
GCTACTACCGGTGGAATCAC+GGG 0.509033 tig0019267:+160318 None:intergenic
TCTGGCGTTCTTTCACAAAA+GGG 0.511252 tig0019267:-159683 Msa1372030:CDS
ATACGAGGGGAGAGATGAAG+AGG 0.517544 tig0019267:+160409 None:intergenic
GGTGGAATCACGGGGAGCAG+TGG 0.517781 tig0019267:+160327 None:intergenic
GCAGATGAACTCTTCTACAA+AGG 0.517915 tig0019267:-160442 Msa1372030:CDS
ATCACGGGGAGCAGTGGAGG+AGG 0.520130 tig0019267:+160333 None:intergenic
AATGAGTGTGATGGTGATGA+AGG 0.520154 tig0019267:+160541 None:intergenic
GGTGAAGATCTCATCGAAGA+AGG 0.550102 tig0019267:+159713 None:intergenic
TCATGATTACTACTAACCCC+TGG 0.551114 tig0019267:+159554 None:intergenic
TGCAGGACAGAGAGTGTTGG+AGG 0.552177 tig0019267:+160462 None:intergenic
ACTGCTCCCCGTGATTCCAC+CGG 0.554614 tig0019267:-160325 Msa1372030:CDS
ACAGCAACAAACAGTGGAGG+AGG 0.558053 tig0019267:-159909 Msa1372030:CDS
GAGAAGGAGAGTACGTACCA+TGG 0.559429 tig0019267:+160384 None:intergenic
GAGTTGCAGAGTGCCATTCA+AGG 0.563158 tig0019267:-159617 Msa1372030:CDS
AGAGATGAAGAGGTAAGAGT+TGG 0.563757 tig0019267:+160419 None:intergenic
AACGTTAACTACTACGACAA+CGG 0.575052 tig0019267:-159861 Msa1372030:CDS
TGATCGAGATGCTTCTTCCA+TGG 0.576373 tig0019267:-159642 Msa1372030:CDS
AGAAGAAAAGAGCTGAGATG+GGG 0.580424 tig0019267:-160612 Msa1372030:CDS
TTGTAGAAGAGTTCATCTGC+AGG 0.581095 tig0019267:+160445 None:intergenic
ATCTGCAGGACAGAGAGTGT+TGG 0.581581 tig0019267:+160459 None:intergenic
TCTTTGATTACCAATAAACC+AGG 0.582297 tig0019267:-159572 Msa1372030:CDS
TCTCTCCCCTCGTATCTCCA+TGG 0.583262 tig0019267:-160401 Msa1372030:CDS
ATCACTGATGAAAGAAGTGG+TGG 0.586109 tig0019267:+160282 None:intergenic
GAGAAGAAAGAGAATGTGGC+GGG 0.590250 tig0019267:-159806 Msa1372030:CDS
ACCGTTGCTAAAACCCGAGA+AGG 0.590587 tig0019267:-160058 Msa1372030:CDS
ATCTGAGAAGAAAGAGAATG+TGG 0.594317 tig0019267:-159810 Msa1372030:CDS
AGAAGTGGTGGAATCATTGG+AGG 0.594966 tig0019267:+160294 None:intergenic
CTTTGATTACCAATAAACCA+GGG 0.602225 tig0019267:-159571 Msa1372030:CDS
ATTGGATCTAGTGTTGTTGG+AGG 0.616982 tig0019267:+160168 None:intergenic
GAAAGAACGCCAGAATGACT+TGG 0.620408 tig0019267:+159692 None:intergenic
GATTGTGAACTCAAAATCTG+AGG 0.622599 tig0019267:+160504 None:intergenic
ATTGGAGGCGCTACTACCGG+TGG 0.625649 tig0019267:+160309 None:intergenic
ATGAGTGTGATGGTGATGAA+GGG 0.631861 tig0019267:+160542 None:intergenic
TACGTACCATGGAGATACGA+GGG 0.636974 tig0019267:+160395 None:intergenic
AAGGGTGTTCTTCTTCGTGG+TGG 0.640900 tig0019267:-159665 Msa1372030:CDS
AAGATCACTGATGAAAGAAG+TGG 0.640945 tig0019267:+160279 None:intergenic
CAGCAACAAACAGTGGAGGA+GGG 0.645100 tig0019267:-159908 Msa1372030:CDS
AAAACAGCAACAAACAGTGG+AGG 0.646252 tig0019267:-159912 Msa1372030:CDS
TGAGAAGAAAGAGAATGTGG+CGG 0.646818 tig0019267:-159807 Msa1372030:CDS
CTACTACCGGTGGAATCACG+GGG 0.647123 tig0019267:+160319 None:intergenic
GATGATGAGAATGAGTGTGA+TGG 0.651954 tig0019267:+160532 None:intergenic
TTTGATTACCAATAAACCAG+GGG 0.666066 tig0019267:-159570 Msa1372030:CDS
GTACGTACCATGGAGATACG+AGG 0.687365 tig0019267:+160394 None:intergenic
AGAGTGTTGGAGGATTTGCG+AGG 0.696367 tig0019267:+160472 None:intergenic
TTGTGCAACCATGTATGATG+TGG 0.710984 tig0019267:-160638 None:intergenic
ACGTACCATGGAGATACGAG+GGG 0.713565 tig0019267:+160396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATCTCATTCGTTTT+CGG - tig0019267:160386-160405 Msa1372030:CDS 25.0%
!! TATGTTATCTCATTCGTTTT+CGG - tig0019267:160386-160405 Msa1372030:CDS 25.0%
! TGTTTCTTTTGCTCTGTTTT+TGG + tig0019267:159590-159609 None:intergenic 30.0%
AGACAAAGAGAAATACTTGT+TGG + tig0019267:160040-160059 None:intergenic 30.0%
! ATGTTATCTCATTCGTTTTC+GGG - tig0019267:160387-160406 Msa1372030:CDS 30.0%
TCTTTGATTACCAATAAACC+AGG - tig0019267:160594-160613 Msa1372030:CDS 30.0%
CTTTGATTACCAATAAACCA+GGG - tig0019267:160595-160614 Msa1372030:CDS 30.0%
TTTGATTACCAATAAACCAG+GGG - tig0019267:160596-160615 Msa1372030:CDS 30.0%
! TGTTTCTTTTGCTCTGTTTT+TGG + tig0019267:159590-159609 None:intergenic 30.0%
AGACAAAGAGAAATACTTGT+TGG + tig0019267:160040-160059 None:intergenic 30.0%
! ATGTTATCTCATTCGTTTTC+GGG - tig0019267:160387-160406 Msa1372030:CDS 30.0%
TCTTTGATTACCAATAAACC+AGG - tig0019267:160594-160613 Msa1372030:CDS 30.0%
CTTTGATTACCAATAAACCA+GGG - tig0019267:160595-160614 Msa1372030:CDS 30.0%
TTTGATTACCAATAAACCAG+GGG - tig0019267:160596-160615 Msa1372030:CDS 30.0%
GATTGTGAACTCAAAATCTG+AGG + tig0019267:159665-159684 None:intergenic 35.0%
AAGATCACTGATGAAAGAAG+TGG + tig0019267:159890-159909 None:intergenic 35.0%
TCTTCTTCTGTTACAGAACT+TGG + tig0019267:159946-159965 None:intergenic 35.0%
TGAATTGGATCTAGTGTTGT+TGG + tig0019267:160004-160023 None:intergenic 35.0%
! GGTTTTCTTCAACTGTGAAT+TGG + tig0019267:160019-160038 None:intergenic 35.0%
GGTTTCTTTACGAAAAACAG+AGG + tig0019267:160070-160089 None:intergenic 35.0%
!!! GGTTTCAACTGTTTTAGCAA+CGG + tig0019267:160091-160110 None:intergenic 35.0%
TAACAACAGTTTCACCTTCT+CGG + tig0019267:160125-160144 None:intergenic 35.0%
! AATGAGTGTTACTGCTAAAG+AGG - tig0019267:160179-160198 Msa1372030:CDS 35.0%
TGTGAAAGTTTCTCGTACAA+TGG + tig0019267:160234-160253 None:intergenic 35.0%
ACAAAAACAGCAACAAACAG+TGG - tig0019267:160251-160270 Msa1372030:CDS 35.0%
AACGTTAACTACTACGACAA+CGG - tig0019267:160305-160324 Msa1372030:CDS 35.0%
ATCTGAGAAGAAAGAGAATG+TGG - tig0019267:160356-160375 Msa1372030:CDS 35.0%
! TGTTATCTCATTCGTTTTCG+GGG - tig0019267:160388-160407 Msa1372030:CDS 35.0%
!! ATTCGTTTTCGGGGAATTTA+AGG - tig0019267:160397-160416 Msa1372030:CDS 35.0%
ATGAGTAATAGCACCTTGAA+TGG + tig0019267:160565-160584 None:intergenic 35.0%
GATTGTGAACTCAAAATCTG+AGG + tig0019267:159665-159684 None:intergenic 35.0%
AAGATCACTGATGAAAGAAG+TGG + tig0019267:159890-159909 None:intergenic 35.0%
TCTTCTTCTGTTACAGAACT+TGG + tig0019267:159946-159965 None:intergenic 35.0%
TGAATTGGATCTAGTGTTGT+TGG + tig0019267:160004-160023 None:intergenic 35.0%
! GGTTTTCTTCAACTGTGAAT+TGG + tig0019267:160019-160038 None:intergenic 35.0%
GGTTTCTTTACGAAAAACAG+AGG + tig0019267:160070-160089 None:intergenic 35.0%
!!! GGTTTCAACTGTTTTAGCAA+CGG + tig0019267:160091-160110 None:intergenic 35.0%
TAACAACAGTTTCACCTTCT+CGG + tig0019267:160125-160144 None:intergenic 35.0%
! AATGAGTGTTACTGCTAAAG+AGG - tig0019267:160179-160198 Msa1372030:CDS 35.0%
TGTGAAAGTTTCTCGTACAA+TGG + tig0019267:160234-160253 None:intergenic 35.0%
ACAAAAACAGCAACAAACAG+TGG - tig0019267:160251-160270 Msa1372030:CDS 35.0%
AACGTTAACTACTACGACAA+CGG - tig0019267:160305-160324 Msa1372030:CDS 35.0%
ATCTGAGAAGAAAGAGAATG+TGG - tig0019267:160356-160375 Msa1372030:CDS 35.0%
! TGTTATCTCATTCGTTTTCG+GGG - tig0019267:160388-160407 Msa1372030:CDS 35.0%
!! ATTCGTTTTCGGGGAATTTA+AGG - tig0019267:160397-160416 Msa1372030:CDS 35.0%
ATGAGTAATAGCACCTTGAA+TGG + tig0019267:160565-160584 None:intergenic 35.0%
AGAGAAGAAAAGAGCTGAGA+TGG - tig0019267:159552-159571 Msa1372030:CDS 40.0%
GAGAAGAAAAGAGCTGAGAT+GGG - tig0019267:159553-159572 Msa1372030:CDS 40.0%
AGAAGAAAAGAGCTGAGATG+GGG - tig0019267:159554-159573 Msa1372030:CDS 40.0%
! ATGAGTGTGATGGTGATGAA+GGG + tig0019267:159627-159646 None:intergenic 40.0%
! AATGAGTGTGATGGTGATGA+AGG + tig0019267:159628-159647 None:intergenic 40.0%
GATGATGAGAATGAGTGTGA+TGG + tig0019267:159637-159656 None:intergenic 40.0%
TTGTAGAAGAGTTCATCTGC+AGG + tig0019267:159724-159743 None:intergenic 40.0%
GCAGATGAACTCTTCTACAA+AGG - tig0019267:159724-159743 Msa1372030:CDS 40.0%
AGAGATGAAGAGGTAAGAGT+TGG + tig0019267:159750-159769 None:intergenic 40.0%
! GAAAGAAGTGGTGGAATCAT+TGG + tig0019267:159878-159897 None:intergenic 40.0%
ATCACTGATGAAAGAAGTGG+TGG + tig0019267:159887-159906 None:intergenic 40.0%
CGTGAAGAATCACAAGAATC+AGG + tig0019267:159922-159941 None:intergenic 40.0%
! ATTGGATCTAGTGTTGTTGG+AGG + tig0019267:160001-160020 None:intergenic 40.0%
AACAACAGTTTCACCTTCTC+GGG + tig0019267:160124-160143 None:intergenic 40.0%
AAAACAGCAACAAACAGTGG+AGG - tig0019267:160254-160273 Msa1372030:CDS 40.0%
TGAGAAGAAAGAGAATGTGG+CGG - tig0019267:160359-160378 Msa1372030:CDS 40.0%
GAAACACAGCTTCTCTTTCT+TGG + tig0019267:160426-160445 None:intergenic 40.0%
AGATCTTCACCAAGTCATTC+TGG - tig0019267:160465-160484 Msa1372030:CDS 40.0%
TTCTGGCGTTCTTTCACAAA+AGG - tig0019267:160482-160501 Msa1372030:CDS 40.0%
TCTGGCGTTCTTTCACAAAA+GGG - tig0019267:160483-160502 Msa1372030:CDS 40.0%
ACTACTAACCCCTGGTTTAT+TGG + tig0019267:160607-160626 None:intergenic 40.0%
TCATGATTACTACTAACCCC+TGG + tig0019267:160615-160634 None:intergenic 40.0%
AGAGAAGAAAAGAGCTGAGA+TGG - tig0019267:159552-159571 Msa1372030:CDS 40.0%
GAGAAGAAAAGAGCTGAGAT+GGG - tig0019267:159553-159572 Msa1372030:CDS 40.0%
AGAAGAAAAGAGCTGAGATG+GGG - tig0019267:159554-159573 Msa1372030:CDS 40.0%
! ATGAGTGTGATGGTGATGAA+GGG + tig0019267:159627-159646 None:intergenic 40.0%
! AATGAGTGTGATGGTGATGA+AGG + tig0019267:159628-159647 None:intergenic 40.0%
GATGATGAGAATGAGTGTGA+TGG + tig0019267:159637-159656 None:intergenic 40.0%
TTGTAGAAGAGTTCATCTGC+AGG + tig0019267:159724-159743 None:intergenic 40.0%
GCAGATGAACTCTTCTACAA+AGG - tig0019267:159724-159743 Msa1372030:CDS 40.0%
AGAGATGAAGAGGTAAGAGT+TGG + tig0019267:159750-159769 None:intergenic 40.0%
! GAAAGAAGTGGTGGAATCAT+TGG + tig0019267:159878-159897 None:intergenic 40.0%
ATCACTGATGAAAGAAGTGG+TGG + tig0019267:159887-159906 None:intergenic 40.0%
CGTGAAGAATCACAAGAATC+AGG + tig0019267:159922-159941 None:intergenic 40.0%
! ATTGGATCTAGTGTTGTTGG+AGG + tig0019267:160001-160020 None:intergenic 40.0%
AACAACAGTTTCACCTTCTC+GGG + tig0019267:160124-160143 None:intergenic 40.0%
AAAACAGCAACAAACAGTGG+AGG - tig0019267:160254-160273 Msa1372030:CDS 40.0%
TGAGAAGAAAGAGAATGTGG+CGG - tig0019267:160359-160378 Msa1372030:CDS 40.0%
GAAACACAGCTTCTCTTTCT+TGG + tig0019267:160426-160445 None:intergenic 40.0%
AGATCTTCACCAAGTCATTC+TGG - tig0019267:160465-160484 Msa1372030:CDS 40.0%
TTCTGGCGTTCTTTCACAAA+AGG - tig0019267:160482-160501 Msa1372030:CDS 40.0%
TCTGGCGTTCTTTCACAAAA+GGG - tig0019267:160483-160502 Msa1372030:CDS 40.0%
ACTACTAACCCCTGGTTTAT+TGG + tig0019267:160607-160626 None:intergenic 40.0%
TCATGATTACTACTAACCCC+TGG + tig0019267:160615-160634 None:intergenic 40.0%
TACGTACCATGGAGATACGA+GGG + tig0019267:159774-159793 None:intergenic 45.0%
! AGAAGTGGTGGAATCATTGG+AGG + tig0019267:159875-159894 None:intergenic 45.0%
!! ACCTTCTCGGGTTTTAGCAA+CGG + tig0019267:160112-160131 None:intergenic 45.0%
GAGAAGAAAGAGAATGTGGC+GGG - tig0019267:160360-160379 Msa1372030:CDS 45.0%
GGTGAAGATCTCATCGAAGA+AGG + tig0019267:160456-160475 None:intergenic 45.0%
GAAAGAACGCCAGAATGACT+TGG + tig0019267:160477-160496 None:intergenic 45.0%
!! CAAAAGGGTGTTCTTCTTCG+TGG - tig0019267:160498-160517 Msa1372030:CDS 45.0%
TGATCGAGATGCTTCTTCCA+TGG - tig0019267:160524-160543 Msa1372030:CDS 45.0%
TACGTACCATGGAGATACGA+GGG + tig0019267:159774-159793 None:intergenic 45.0%
! AGAAGTGGTGGAATCATTGG+AGG + tig0019267:159875-159894 None:intergenic 45.0%
!! ACCTTCTCGGGTTTTAGCAA+CGG + tig0019267:160112-160131 None:intergenic 45.0%
GAGAAGAAAGAGAATGTGGC+GGG - tig0019267:160360-160379 Msa1372030:CDS 45.0%
GGTGAAGATCTCATCGAAGA+AGG + tig0019267:160456-160475 None:intergenic 45.0%
GAAAGAACGCCAGAATGACT+TGG + tig0019267:160477-160496 None:intergenic 45.0%
!! CAAAAGGGTGTTCTTCTTCG+TGG - tig0019267:160498-160517 Msa1372030:CDS 45.0%
TGATCGAGATGCTTCTTCCA+TGG - tig0019267:160524-160543 Msa1372030:CDS 45.0%
GGAGGATTTGCGAGGTGAAA+TGG + tig0019267:159689-159708 None:intergenic 50.0%
!! AGAGTGTTGGAGGATTTGCG+AGG + tig0019267:159697-159716 None:intergenic 50.0%
! ATCTGCAGGACAGAGAGTGT+TGG + tig0019267:159710-159729 None:intergenic 50.0%
ATACGAGGGGAGAGATGAAG+AGG + tig0019267:159760-159779 None:intergenic 50.0%
ACGTACCATGGAGATACGAG+GGG + tig0019267:159773-159792 None:intergenic 50.0%
GTACGTACCATGGAGATACG+AGG + tig0019267:159775-159794 None:intergenic 50.0%
! GAGAAGGAGAGTACGTACCA+TGG + tig0019267:159785-159804 None:intergenic 50.0%
!! ATCATTGGAGGCGCTACTAC+CGG + tig0019267:159863-159882 None:intergenic 50.0%
ACCGTTGCTAAAACCCGAGA+AGG - tig0019267:160108-160127 Msa1372030:CDS 50.0%
ACAGCAACAAACAGTGGAGG+AGG - tig0019267:160257-160276 Msa1372030:CDS 50.0%
CAGCAACAAACAGTGGAGGA+GGG - tig0019267:160258-160277 Msa1372030:CDS 50.0%
!! AAGGGTGTTCTTCTTCGTGG+TGG - tig0019267:160501-160520 Msa1372030:CDS 50.0%
! GAGTTGCAGAGTGCCATTCA+AGG - tig0019267:160549-160568 Msa1372030:CDS 50.0%
GGAGGATTTGCGAGGTGAAA+TGG + tig0019267:159689-159708 None:intergenic 50.0%
!! AGAGTGTTGGAGGATTTGCG+AGG + tig0019267:159697-159716 None:intergenic 50.0%
! ATCTGCAGGACAGAGAGTGT+TGG + tig0019267:159710-159729 None:intergenic 50.0%
ATACGAGGGGAGAGATGAAG+AGG + tig0019267:159760-159779 None:intergenic 50.0%
ACGTACCATGGAGATACGAG+GGG + tig0019267:159773-159792 None:intergenic 50.0%
GTACGTACCATGGAGATACG+AGG + tig0019267:159775-159794 None:intergenic 50.0%
! GAGAAGGAGAGTACGTACCA+TGG + tig0019267:159785-159804 None:intergenic 50.0%
!! ATCATTGGAGGCGCTACTAC+CGG + tig0019267:159863-159882 None:intergenic 50.0%
ACCGTTGCTAAAACCCGAGA+AGG - tig0019267:160108-160127 Msa1372030:CDS 50.0%
ACAGCAACAAACAGTGGAGG+AGG - tig0019267:160257-160276 Msa1372030:CDS 50.0%
CAGCAACAAACAGTGGAGGA+GGG - tig0019267:160258-160277 Msa1372030:CDS 50.0%
!! AAGGGTGTTCTTCTTCGTGG+TGG - tig0019267:160501-160520 Msa1372030:CDS 50.0%
! GAGTTGCAGAGTGCCATTCA+AGG - tig0019267:160549-160568 Msa1372030:CDS 50.0%
!! TGCAGGACAGAGAGTGTTGG+AGG + tig0019267:159707-159726 None:intergenic 55.0%
TCTCTCCCCTCGTATCTCCA+TGG - tig0019267:159765-159784 Msa1372030:CDS 55.0%
AGGTGGAGGAGGAAGAGAGA+AGG + tig0019267:159801-159820 None:intergenic 55.0%
CTACTACCGGTGGAATCACG+GGG + tig0019267:159850-159869 None:intergenic 55.0%
GCTACTACCGGTGGAATCAC+GGG + tig0019267:159851-159870 None:intergenic 55.0%
CGCTACTACCGGTGGAATCA+CGG + tig0019267:159852-159871 None:intergenic 55.0%
GGCACTCTGCAACTCTTCCA+TGG + tig0019267:160544-160563 None:intergenic 55.0%
!! TGCAGGACAGAGAGTGTTGG+AGG + tig0019267:159707-159726 None:intergenic 55.0%
TCTCTCCCCTCGTATCTCCA+TGG - tig0019267:159765-159784 Msa1372030:CDS 55.0%
AGGTGGAGGAGGAAGAGAGA+AGG + tig0019267:159801-159820 None:intergenic 55.0%
CTACTACCGGTGGAATCACG+GGG + tig0019267:159850-159869 None:intergenic 55.0%
GCTACTACCGGTGGAATCAC+GGG + tig0019267:159851-159870 None:intergenic 55.0%
CGCTACTACCGGTGGAATCA+CGG + tig0019267:159852-159871 None:intergenic 55.0%
GGCACTCTGCAACTCTTCCA+TGG + tig0019267:160544-160563 None:intergenic 55.0%
AGCAGTGGAGGAGGAAGTGG+CGG + tig0019267:159827-159846 None:intergenic 60.0%
ACTGCTCCCCGTGATTCCAC+CGG - tig0019267:159841-159860 Msa1372030:CDS 60.0%
!! ATTGGAGGCGCTACTACCGG+TGG + tig0019267:159860-159879 None:intergenic 60.0%
AGCAGTGGAGGAGGAAGTGG+CGG + tig0019267:159827-159846 None:intergenic 60.0%
ACTGCTCCCCGTGATTCCAC+CGG - tig0019267:159841-159860 Msa1372030:CDS 60.0%
!! ATTGGAGGCGCTACTACCGG+TGG + tig0019267:159860-159879 None:intergenic 60.0%
AGTGGAGGAGGAAGTGGCGG+AGG + tig0019267:159824-159843 None:intergenic 65.0%
GGGAGCAGTGGAGGAGGAAG+TGG + tig0019267:159830-159849 None:intergenic 65.0%
ATCACGGGGAGCAGTGGAGG+AGG + tig0019267:159836-159855 None:intergenic 65.0%
GGAATCACGGGGAGCAGTGG+AGG + tig0019267:159839-159858 None:intergenic 65.0%
GGTGGAATCACGGGGAGCAG+TGG + tig0019267:159842-159861 None:intergenic 65.0%
AGTGGAGGAGGAAGTGGCGG+AGG + tig0019267:159824-159843 None:intergenic 65.0%
GGGAGCAGTGGAGGAGGAAG+TGG + tig0019267:159830-159849 None:intergenic 65.0%
ATCACGGGGAGCAGTGGAGG+AGG + tig0019267:159836-159855 None:intergenic 65.0%
GGAATCACGGGGAGCAGTGG+AGG + tig0019267:159839-159858 None:intergenic 65.0%
GGTGGAATCACGGGGAGCAG+TGG + tig0019267:159842-159861 None:intergenic 65.0%
! AGTGGCGGAGGAGGTGGAGG+AGG + tig0019267:159812-159831 None:intergenic 70.0%
! GGAAGTGGCGGAGGAGGTGG+AGG + tig0019267:159815-159834 None:intergenic 70.0%
! GGAGGAAGTGGCGGAGGAGG+TGG + tig0019267:159818-159837 None:intergenic 70.0%
! GGAGGAGGAAGTGGCGGAGG+AGG + tig0019267:159821-159840 None:intergenic 70.0%
! AGTGGCGGAGGAGGTGGAGG+AGG + tig0019267:159812-159831 None:intergenic 70.0%
! GGAAGTGGCGGAGGAGGTGG+AGG + tig0019267:159815-159834 None:intergenic 70.0%
! GGAGGAAGTGGCGGAGGAGG+TGG + tig0019267:159818-159837 None:intergenic 70.0%
! GGAGGAGGAAGTGGCGGAGG+AGG + tig0019267:159821-159840 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019267 gene 159538 160650 159538 ID=Msa1372030;Name=Msa1372030
tig0019267 mRNA 159538 160650 159538 ID=Msa1372030-mRNA-1;Parent=Msa1372030;Name=Msa1372030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|370
tig0019267 exon 159538 160650 159538 ID=Msa1372030-mRNA-1:exon:2539;Parent=Msa1372030-mRNA-1
tig0019267 CDS 159538 160650 159538 ID=Msa1372030-mRNA-1:cds;Parent=Msa1372030-mRNA-1
Gene Sequence

>Msa1372030

ATGTATGATGTGGTAGAGAAGAAAAGAGCTGAGATGGGGAAGAAAAGAACCAAAAACAGAGCAAAAGAAACAAAATCATACACACTCCCTTCATCACCATCACACTCATTCTCATCATCTTCTTCCTCAGATTTTGAGTTCACAATCTCCATTTCACCTCGCAAATCCTCCAACACTCTCTGTCCTGCAGATGAACTCTTCTACAAAGGCCAACTCTTACCTCTTCATCTCTCCCCTCGTATCTCCATGGTACGTACTCTCCTTCTCTCTTCCTCCTCCACCTCCTCCGCCACTTCCTCCTCCACTGCTCCCCGTGATTCCACCGGTAGTAGCGCCTCCAATGATTCCACCACTTCTTTCATCAGTGATCTTGCTCTTTTTCCTGATTCTTGTGATTCTTCACGACCAAGTTCTGTAACAGAAGAAGATGAGTTAAAGCGTCTTCATAATCACAACAATTCCTCCAACAACACTAGATCCAATTCACAGTTGAAGAAAACCAACAAGTATTTCTCTTTGTCTAGATTCTCCTCTGTTTTTCGTAAAGAAACCGTTGCTAAAACAGTTGAAACCGTTGCTAAAACCCGAGAAGGTGAAACTGTTGTTAATAGTATTAACAACAGTTCAGTGAAGATGAAGAGAATGAGTGTTACTGCTAAAGAGGTGATACGAAAATATTTCAAGAAAGTGAAACCATTGTACGAGAAACTTTCACAAAAACAGCAACAAACAGTGGAGGAGGGTGCAAATAGCAATACAAATACAACAACGTTAACTACTACGACAACGGTTATGTCTTTGTTAACAAAAACAGAGAGATCTGAGAAGAAAGAGAATGTGGCGGGTACTATGTTATCTCATTCGTTTTCGGGGAATTTAAGGTATCCAAGAAAGAGAAGCTGTGTTTCAAGTTGTCCTTCTTCGATGAGATCTTCACCAAGTCATTCTGGCGTTCTTTCACAAAAGGGTGTTCTTCTTCGTGGTGGTGATCGAGATGCTTCTTCCATGGAAGAGTTGCAGAGTGCCATTCAAGGTGCTATTACTCATTGCAAAAACTCTTTGATTACCAATAAACCAGGGGTTAGTAGTAATCATGAAATTAATCTCATCTAA

Protein sequence

>Msa1372030

MYDVVEKKRAEMGKKRTKNRAKETKSYTLPSSPSHSFSSSSSSDFEFTISISPRKSSNTLCPADELFYKGQLLPLHLSPRISMVRTLLLSSSSTSSATSSSTAPRDSTGSSASNDSTTSFISDLALFPDSCDSSRPSSVTEEDELKRLHNHNNSSNNTRSNSQLKKTNKYFSLSRFSSVFRKETVAKTVETVAKTREGETVVNSINNSSVKMKRMSVTAKEVIRKYFKKVKPLYEKLSQKQQQTVEEGANSNTNTTTLTTTTTVMSLLTKTERSEKKENVAGTMLSHSFSGNLRYPRKRSCVSSCPSSMRSSPSHSGVLSQKGVLLRGGDRDASSMEELQSAIQGAITHCKNSLITNKPGVSSNHEINLI*