AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507920 MtrunA17_Chr3g0111961 99.589 487 1 1 1 487 1 486 0.0 990
Msa0507920 MtrunA17_Chr4g0057131 62.754 443 152 6 48 487 43 475 0.0 550
Msa0507920 MtrunA17_Chr3g0098921 44.342 433 207 9 57 474 33 446 9.85e-120 358
Msa0507920 MtrunA17_Chr5g0395821 46.099 423 200 8 51 464 26 429 1.96e-119 357
Msa0507920 MtrunA17_Chr7g0267961 51.360 331 147 5 150 466 103 433 3.88e-115 347
Msa0507920 MtrunA17_Chr7g0233651 47.590 332 160 5 155 472 92 423 7.78e-104 317
Msa0507920 MtrunA17_Chr7g0234591 47.305 334 160 6 159 476 99 432 1.40e-101 311
Msa0507920 MtrunA17_Chr7g0228191 48.065 310 151 4 167 466 13 322 5.38e-101 306
Msa0507920 MtrunA17_Chr7g0235181 42.824 432 207 10 44 464 3 405 2.08e-100 308
Msa0507920 MtrunA17_Chr2g0308501 42.988 328 177 5 170 487 8 335 1.23e-92 285
Msa0507920 MtrunA17_Chr2g0330601 34.659 352 186 7 151 487 51 373 2.12e-63 210
Msa0507920 MtrunA17_Chr2g0330681 37.710 297 149 9 162 443 94 369 8.23e-50 174
Msa0507920 MtrunA17_Chr7g0253861 23.113 212 157 3 256 465 48 255 1.54e-14 74.7
Msa0507920 MtrunA17_Chr5g0401671 22.945 292 160 9 186 463 312 552 1.35e-13 73.2
Msa0507920 MtrunA17_Chr1g0176241 24.521 261 180 10 204 461 235 481 1.68e-13 72.4
Msa0507920 MtrunA17_Chr6g0448921 26.708 161 112 3 219 377 57 213 6.97e-13 71.2
Msa0507920 MtrunA17_Chr8g0352821 24.719 267 183 10 224 481 186 443 1.14e-12 70.5
Msa0507920 MtrunA17_Chr7g0246741 28.655 171 116 3 296 464 361 527 4.40e-12 68.6
Msa0507920 MtrunA17_Chr3g0136971 25.414 181 128 4 200 378 441 616 1.13e-11 67.4
Msa0507920 MtrunA17_Chr2g0321211 27.854 219 115 8 234 413 24 238 1.82e-11 66.6
Msa0507920 MtrunA17_Chr5g0401661 23.776 286 165 10 186 463 402 642 1.92e-11 66.6
Msa0507920 MtrunA17_Chr4g0053651 24.000 250 174 9 224 463 292 535 2.66e-11 65.9
Msa0507920 MtrunA17_Chr1g0185501 25.263 190 134 6 275 462 41 224 3.39e-11 64.3
Msa0507920 MtrunA17_Chr2g0281451 27.094 203 128 6 189 377 16 212 4.29e-11 65.9
Msa0507920 MtrunA17_Chr1g0172501 23.826 298 176 9 209 462 263 553 4.70e-11 65.1
Msa0507920 MtrunA17_Chr4g0067151 25.991 227 133 9 257 462 21 233 5.34e-11 63.9
Msa0507920 MtrunA17_Chr4g0067151 22.800 250 182 6 219 461 76 321 6.70e-11 63.5
Msa0507920 MtrunA17_Chr6g0469371 79.412 34 7 0 276 309 27 60 8.18e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507920 AT5G13840.1 79.226 491 88 6 1 487 1 481 0.0 726
Msa0507920 AT5G13840.2 79.226 491 88 6 1 487 1 481 0.0 726
Msa0507920 AT4G22910.1 62.299 435 149 5 56 487 61 483 0.0 546
Msa0507920 AT4G11920.1 62.332 446 147 6 48 487 45 475 0.0 531
Msa0507920 AT4G33260.1 43.823 429 206 7 49 464 16 422 3.02e-116 349
Msa0507920 AT4G33270.1 43.243 444 206 9 49 472 26 443 1.50e-115 348
Msa0507920 AT5G27570.1 51.111 315 145 3 159 464 110 424 2.07e-112 340
Msa0507920 AT4G33260.2 42.657 429 211 7 49 464 16 422 1.20e-110 335
Msa0507920 AT5G27080.1 49.841 315 149 3 159 464 102 416 9.26e-110 333
Msa0507920 AT5G26900.1 48.734 316 154 3 157 464 103 418 2.33e-107 327
Msa0507920 AT5G27945.1 45.045 333 173 5 141 464 71 402 2.88e-93 290
Msa0507920 AT5G13480.3 25.000 296 203 11 198 482 85 372 3.45e-15 78.6
Msa0507920 AT5G13480.4 25.000 296 203 11 198 482 85 372 4.31e-15 78.6
Msa0507920 AT5G13480.1 25.000 296 203 11 198 482 97 384 4.74e-15 78.2
Msa0507920 AT5G13480.2 25.000 296 203 11 198 482 108 395 4.89e-15 78.2
Msa0507920 AT5G52820.1 26.848 257 168 10 211 462 231 472 9.67e-15 77.0
Msa0507920 AT2G43770.1 22.170 212 159 3 256 465 46 253 3.05e-14 74.3
Msa0507920 AT5G23430.3 27.528 178 122 4 202 377 41 213 3.97e-14 75.5
Msa0507920 AT5G23430.2 27.528 178 122 4 202 377 41 213 3.97e-14 75.5
Msa0507920 AT5G23430.1 27.528 178 122 4 202 377 41 213 4.49e-14 75.5
Msa0507920 AT5G08390.1 26.966 178 123 4 202 377 41 213 5.60e-14 75.1
Msa0507920 AT3G49660.1 25.893 224 135 8 257 463 18 227 8.04e-14 72.8
Msa0507920 AT3G49660.1 22.581 248 183 5 219 461 69 312 4.03e-12 67.8
Msa0507920 AT1G61210.1 26.257 179 123 5 202 377 40 212 1.99e-12 70.5
Msa0507920 AT1G61210.3 26.257 179 123 5 202 377 40 212 2.09e-12 70.5
Msa0507920 AT1G61210.2 26.257 179 123 5 202 377 40 212 2.09e-12 70.5
Msa0507920 AT1G11160.4 27.933 179 120 5 202 377 40 212 2.74e-12 69.7
Msa0507920 AT1G11160.2 27.933 179 120 5 202 377 40 212 2.88e-12 69.7
Msa0507920 AT1G11160.1 27.933 179 120 5 202 377 40 212 2.93e-12 69.7
Msa0507920 AT3G18130.1 27.344 256 156 8 232 463 74 323 3.92e-12 67.8
Msa0507920 AT1G11160.3 27.564 156 107 3 224 377 19 170 5.84e-12 68.9
Msa0507920 AT4G35370.1 26.230 183 87 6 224 380 219 379 6.08e-12 67.8
Msa0507920 AT5G25150.1 24.747 198 142 5 193 388 433 625 8.91e-12 68.2
Msa0507920 AT3G44530.1 27.313 227 124 7 224 413 16 238 9.19e-12 68.2
Msa0507920 AT3G44530.2 27.313 227 124 7 224 413 16 238 9.50e-12 68.2
Msa0507920 AT5G25150.2 24.747 198 142 5 193 388 433 625 1.01e-11 67.8
Msa0507920 AT1G15440.2 28.977 176 119 3 296 469 341 512 2.42e-11 66.6
Msa0507920 AT1G15440.1 28.977 176 119 3 296 469 381 552 2.64e-11 66.6
Msa0507920 AT5G43920.1 25.140 179 125 3 291 463 211 386 3.23e-11 65.9

Find 153 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATGGAATTCTCGCATTT+TGG 0.202786 3_4:-55560479 Msa0507920:CDS
CTTACCTTGTGGGGCGTCTT+AGG 0.222128 3_4:+55561689 None:intergenic
CTGATCGGTGTATTCGTTTC+TGG 0.223974 3_4:-55559984 Msa0507920:CDS
GAAGTTGTTGTTGAGTAAAA+TGG 0.226027 3_4:+55562277 None:intergenic
GGGATGAGACTCTGCGGTTT+TGG 0.238154 3_4:-55559426 Msa0507920:CDS
TGCTTATGAATCATCTGATT+TGG 0.243659 3_4:+55559242 None:intergenic
CAAAGGCCTGTATCTTTAAC+TGG 0.271405 3_4:+55559280 None:intergenic
CAGAGCAACCTTCTCGTATC+TGG 0.287630 3_4:-55560018 Msa0507920:CDS
CTCGTGTTTGGTATATAATA+TGG 0.294709 3_4:+55559124 None:intergenic
AATTAGGTTGCAACTCTAAC+TGG 0.295863 3_4:-55559625 Msa0507920:intron
AATATCGAAGGCGAAGAAAA+AGG 0.319187 3_4:+55561773 None:intergenic
TTGGCACTTGTGTTTATCTC+TGG 0.333779 3_4:-55560878 Msa0507920:CDS
GCTTATGAATCATCTGATTT+GGG 0.337855 3_4:+55559243 None:intergenic
TCAAAAGCTTTACAATTTGT+AGG 0.355263 3_4:+55559097 None:intergenic
AGGGTTCCAAGCGACTTTAT+TGG 0.361219 3_4:-55560415 Msa0507920:CDS
TTCATATCCATTGGTACAAA+TGG 0.382848 3_4:-55560682 Msa0507920:CDS
TCTCCTTCTTCTTCTCCTGC+AGG 0.390074 3_4:-55561875 Msa0507920:CDS
TCATTACTCCCTTCTTTAAC+CGG 0.390491 3_4:+55561947 None:intergenic
GACTTTATTGGCAAGCTTGT+CGG 0.390886 3_4:-55560403 Msa0507920:CDS
TCGATATTTGGAAGAAATGA+TGG 0.394918 3_4:-55561758 Msa0507920:CDS
TACAAATGGTGGTCAAGTTC+AGG 0.401103 3_4:-55560668 Msa0507920:intron
TTTGTAGGTTTACTCGTGTT+TGG 0.401723 3_4:+55559112 None:intergenic
TCTTCTTCTCCTGCAGGTTG+TGG 0.401970 3_4:-55561869 Msa0507920:CDS
GGAACTTTCCTAGGAGGCTT+AGG 0.402674 3_4:+55561710 None:intergenic
CCTTCAACTTGACAGGTTTG+TGG 0.403871 3_4:-55560283 Msa0507920:intron
TCTCCTGCAGGTTGTGGTGT+TGG 0.409448 3_4:-55561863 Msa0507920:CDS
GATGACCGGGAACTTGCTTC+TGG 0.413514 3_4:-55560244 Msa0507920:CDS
GTTATTGTTGACATCCCTGC+TGG 0.415431 3_4:+55562142 None:intergenic
CTCTGTTGACACTGGAAGCC+AGG 0.417288 3_4:-55559935 Msa0507920:intron
TTCTGGTGGTAATGATAATC+AGG 0.417463 3_4:-55560227 Msa0507920:intron
TACCACCAGAAGCAAGTTCC+CGG 0.418042 3_4:+55560239 None:intergenic
TGCAGGTGTGTAACCTTGCT+TGG 0.418904 3_4:-55559834 Msa0507920:intron
TGTGACTTGGGGCCTTATGA+TGG 0.421524 3_4:-55560739 Msa0507920:CDS
TGCAATGTCTCCTGATGGTC+AGG 0.422711 3_4:-55559578 Msa0507920:intron
TTTACTTGAATCTTGTGGAT+TGG 0.423069 3_4:-55560929 Msa0507920:CDS
GCACGAGGCGAAGCGGAAGA+AGG 0.429921 3_4:+55562088 None:intergenic
GGAGTAATGAGGCTTATAAT+AGG 0.434256 3_4:-55561934 Msa0507920:CDS
CAGTGTCAACAGAGTTCAAT+TGG 0.437042 3_4:+55559944 None:intergenic
CTACTCCTCCTAAGCCTCCT+AGG 0.441271 3_4:-55561718 Msa0507920:CDS
CGTTTCTGGAACACGACAAA+TGG 0.442087 3_4:-55559970 Msa0507920:CDS
GGTAACTAAGCTGTGTGACT+TGG 0.442507 3_4:-55560752 Msa0507920:CDS
ACTCTCAACAACCAACTTTG+AGG 0.442538 3_4:-55560089 Msa0507920:CDS
TGCAAGAAGGTCAGAACAAT+GGG 0.442773 3_4:-55560529 Msa0507920:CDS
GTAACTAAGCTGTGTGACTT+GGG 0.457093 3_4:-55560751 Msa0507920:CDS
GATACAGGCCTTTGGTCACT+AGG 0.464727 3_4:-55559271 Msa0507920:CDS
CAGGCCCCAGTTAAAGATAC+AGG 0.466060 3_4:-55559286 Msa0507920:CDS
GAAGAAGGAGAAGCAAAATC+AGG 0.474147 3_4:+55561887 None:intergenic
AGGAACCCTCCTTGGTCCAC+TGG 0.476755 3_4:+55560704 None:intergenic
CAGACAATAGTGACTGGTGC+TGG 0.478559 3_4:-55559448 Msa0507920:CDS
GGAGGGCATCAAACAAGAAC+CGG 0.479441 3_4:-55560508 Msa0507920:CDS
CACGAGGCGAAGCGGAAGAA+GGG 0.481206 3_4:+55562089 None:intergenic
AATAATACCTTTGCTAGTGA+TGG 0.483310 3_4:+55559742 None:intergenic
AATCTCTCTGTGAGAGGAAA+GGG 0.484955 3_4:+55562302 None:intergenic
TCAAACAAGAACCGGTGTCT+TGG 0.489887 3_4:-55560500 Msa0507920:CDS
TCCCTTCTTTAACCGGTGAC+TGG 0.494990 3_4:+55561954 None:intergenic
GACAGGTTTGTGGATTGAAA+TGG 0.496996 3_4:-55560273 Msa0507920:intron
TTGACCACCATTTGTACCAA+TGG 0.497202 3_4:+55560675 None:intergenic
TCTTCAAGACTGCATACATT+CGG 0.497264 3_4:-55561989 Msa0507920:CDS
AGCAAGTTCCCGGTCATCAC+AGG 0.498721 3_4:+55560249 None:intergenic
TGGACATTTACCTGACCATC+AGG 0.498898 3_4:+55559568 None:intergenic
GGATATGAAGGAACCCTCCT+TGG 0.504932 3_4:+55560696 None:intergenic
TGGCTTCAGGAAGCAGGGAT+AGG 0.505574 3_4:-55560459 Msa0507920:CDS
CAGTTAAAGATACAGGCCTT+TGG 0.507215 3_4:-55559279 Msa0507920:CDS
TCAGGTCTAAACCTCCCAGC+AGG 0.508097 3_4:-55562157 Msa0507920:CDS
GAGGGTTCCTTCATATCCAT+TGG 0.508547 3_4:-55560691 Msa0507920:CDS
AGCTTGCCAATAAAGTCGCT+TGG 0.510546 3_4:+55560409 None:intergenic
AACCAGTCACCGGTTAAAGA+AGG 0.514252 3_4:-55561956 Msa0507920:CDS
ATTTGTACCAATGGATATGA+AGG 0.514939 3_4:+55560684 None:intergenic
AACCTCAACATATTCTTACT+CGG 0.518937 3_4:+55561824 None:intergenic
TGAAATGGTCCTGTGATGAC+CGG 0.522032 3_4:-55560258 Msa0507920:CDS
CGATATTTGGAAGAAATGAT+GGG 0.526164 3_4:-55561757 Msa0507920:CDS
TATATGAGCAGCTATTGGTA+TGG 0.528902 3_4:-55560119 Msa0507920:intron
GAACCAACACCACAACCTGC+AGG 0.531310 3_4:+55561860 None:intergenic
ACTTTCCTAGGAGGCTTAGG+AGG 0.531462 3_4:+55561713 None:intergenic
TGAATCATCTGATTTGGGTG+CGG 0.533378 3_4:+55559248 None:intergenic
TAAAAGTCATCTTGAAGTGA+AGG 0.536272 3_4:+55560948 None:intergenic
CAAGAACCGGTGTCTTGGCA+TGG 0.537570 3_4:-55560495 Msa0507920:CDS
TATGAATCTGTCACTACACT+TGG 0.538788 3_4:+55562024 None:intergenic
GAATCTGTCACTACACTTGG+AGG 0.541099 3_4:+55562027 None:intergenic
CTGCTGTGAAAGCCATTGCT+TGG 0.542537 3_4:-55560050 Msa0507920:CDS
AGCAGCAAGCATGGAAGATG+AGG 0.542815 3_4:-55559223 Msa0507920:three_prime_UTR
ACAGAACAGACACCATCATA+AGG 0.543861 3_4:+55560727 None:intergenic
GGCGTCTTAGGAACTTTCCT+AGG 0.547742 3_4:+55561701 None:intergenic
GAATATGTTGAGGTTTAAGA+CGG 0.551632 3_4:-55561816 Msa0507920:CDS
TTACTCACAAAATCAAATCA+TGG 0.552909 3_4:-55559776 Msa0507920:CDS
CAACCTGCAGGAGAAGAAGA+AGG 0.554584 3_4:+55561872 None:intergenic
TTCTTACTCGGACTCACCAA+CGG 0.555252 3_4:+55561836 None:intergenic
AGGTTTAAGACGGAGAGTTG+TGG 0.557810 3_4:-55561806 Msa0507920:CDS
CACAAAATCAAATCATGGTG+TGG 0.560137 3_4:-55559771 Msa0507920:CDS
TTATTGTTGACATCCCTGCT+GGG 0.562161 3_4:+55562143 None:intergenic
GAATCTCTCTGTGAGAGGAA+AGG 0.563634 3_4:+55562301 None:intergenic
GAAATATCCATCACTAGCAA+AGG 0.565549 3_4:-55559749 Msa0507920:intron
AATACTCTAGCAGTTGGACT+TGG 0.567179 3_4:-55560897 Msa0507920:CDS
ATGCAAGAAGGTCAGAACAA+TGG 0.567203 3_4:-55560530 Msa0507920:CDS
TGATTCATAAGCAGCAAGCA+TGG 0.567846 3_4:-55559232 Msa0507920:three_prime_UTR
AACCTTCTCGTATCTGGAGG+TGG 0.572049 3_4:-55560012 Msa0507920:CDS
TCTGTCCAGTGGACCAAGGA+GGG 0.572876 3_4:-55560709 Msa0507920:CDS
ATGGAGAGGGTGTTGATGAG+AGG 0.580002 3_4:+55562056 None:intergenic
TTGTGGTGTTGGTTCGCCGT+TGG 0.584804 3_4:-55561852 Msa0507920:CDS
ACCAGTCACCGGTTAAAGAA+GGG 0.584887 3_4:-55561955 Msa0507920:CDS
TCACAAAATACTCTAGCAGT+TGG 0.586601 3_4:-55560903 Msa0507920:CDS
ACGAGAAGGTTGCTCTGATG+AGG 0.586636 3_4:+55560024 None:intergenic
ATGGTGTCTGTTCTGTCCAG+TGG 0.586950 3_4:-55560720 Msa0507920:CDS
AAAGGCCTGTATCTTTAACT+GGG 0.587939 3_4:+55559281 None:intergenic
AGACAATAGTGACTGGTGCT+GGG 0.590497 3_4:-55559447 Msa0507920:CDS
CAATTGAACTCTGTTGACAC+TGG 0.590791 3_4:-55559943 Msa0507920:CDS
TCATTTCTTCCAAATATCGA+AGG 0.592894 3_4:+55561761 None:intergenic
CTGGAGGTGGAACTGCTGAT+CGG 0.593470 3_4:-55559999 Msa0507920:CDS
GACCATCAGGAGACATTGCA+AGG 0.595767 3_4:+55559581 None:intergenic
ATATCCATTGGTACAAATGG+TGG 0.598496 3_4:-55560679 Msa0507920:CDS
GTCTTAGGAACTTTCCTAGG+AGG 0.599352 3_4:+55561704 None:intergenic
ACGAGGCGAAGCGGAAGAAG+GGG 0.599832 3_4:+55562090 None:intergenic
TACCTTGCAATGTCTCCTGA+TGG 0.601989 3_4:-55559583 Msa0507920:CDS
TGCTCTGTAAGCCTCAAAGT+TGG 0.603299 3_4:+55560078 None:intergenic
TTATGGTAACAGATTTGGGA+TGG 0.603590 3_4:-55560559 Msa0507920:intron
GAAATGGTCCTGTGATGACC+GGG 0.607983 3_4:-55560257 Msa0507920:CDS
TTGATAGCGTTTCAAGACGG+AGG 0.610384 3_4:+55562116 None:intergenic
CTGTTCTGTCCAGTGGACCA+AGG 0.611176 3_4:-55560713 Msa0507920:CDS
TTCTGTCCAGTGGACCAAGG+AGG 0.616102 3_4:-55560710 Msa0507920:CDS
ATGGCGAATCTCTCTGTGAG+AGG 0.618000 3_4:+55562296 None:intergenic
CAATTGCAGACAATAGTGAC+TGG 0.618146 3_4:-55559454 Msa0507920:intron
TGATAGCGTTTCAAGACGGA+GGG 0.619878 3_4:+55562117 None:intergenic
GGATGGTACTAAATGCAAGA+AGG 0.620237 3_4:-55560542 Msa0507920:CDS
TAACTAAGCTGTGTGACTTG+GGG 0.621200 3_4:-55560750 Msa0507920:CDS
CTGATGAGGTGACCAAGCAA+TGG 0.623695 3_4:+55560038 None:intergenic
TAGCGTTTCAAGACGGAGGG+AGG 0.625960 3_4:+55562120 None:intergenic
AGCAACCTTCTCGTATCTGG+AGG 0.630408 3_4:-55560015 Msa0507920:CDS
GGGTGCGGCCTAGTGACCAA+AGG 0.631232 3_4:+55559263 None:intergenic
TGTCAACAGAGTTCAATTGG+TGG 0.632166 3_4:+55559947 None:intergenic
CAGGTCTAAACCTCCCAGCA+GGG 0.636073 3_4:-55562156 Msa0507920:CDS
ACATACTTCAGCATGACATG+AGG 0.639225 3_4:-55560435 Msa0507920:CDS
TTGTTGACATCCCTGCTGGG+AGG 0.640070 3_4:+55562146 None:intergenic
TTCCACCTCCAGATACGAGA+AGG 0.640711 3_4:+55560010 None:intergenic
AGAATTCCATGCCAAGACAC+CGG 0.640925 3_4:+55560489 None:intergenic
ATTAATCGATAACCAGTCAC+CGG 0.643856 3_4:-55561966 Msa0507920:CDS
GTGTTGATAGCGTTTCAAGA+CGG 0.644951 3_4:+55562113 None:intergenic
AGTTCCTAAGACGCCCCACA+AGG 0.646840 3_4:-55561693 Msa0507920:intron
AAGAAGGTCAGAACAATGGG+AGG 0.649698 3_4:-55560526 Msa0507920:CDS
TGAGATCGCACGAGGCGAAG+CGG 0.650294 3_4:+55562081 None:intergenic
GACAATAGTGACTGGTGCTG+GGG 0.659564 3_4:-55559446 Msa0507920:CDS
CATACTTCAGCATGACATGA+GGG 0.660026 3_4:-55560434 Msa0507920:CDS
CGAGGCGAAGCGGAAGAAGG+GGG 0.662895 3_4:+55562091 None:intergenic
AGAAGGTCAGAACAATGGGA+GGG 0.662939 3_4:-55560525 Msa0507920:CDS
GGTTAAAGAAGGGAGTAATG+AGG 0.665035 3_4:-55561945 Msa0507920:CDS
GACCGGGAACTTGCTTCTGG+TGG 0.665213 3_4:-55560241 Msa0507920:CDS
GTCCGAGTAAGAATATGTTG+AGG 0.666814 3_4:-55561826 Msa0507920:CDS
AATGAGCTAGTGAGTACACA+TGG 0.668243 3_4:-55559799 Msa0507920:CDS
GGTATAGTACTCTCATGCTG+TGG 0.672992 3_4:+55559602 None:intergenic
GCTTGTCGGCCACAAATCCG+AGG 0.677734 3_4:-55560389 Msa0507920:intron
GAGAGGTTTGAGATCGCACG+AGG 0.678836 3_4:+55562073 None:intergenic
AGTCTTGAAGATGATCTGCA+AGG 0.682253 3_4:+55562001 None:intergenic
AAGGCCTGTATCTTTAACTG+GGG 0.685695 3_4:+55559282 None:intergenic
GTGCTGGGGATGAGACTCTG+CGG 0.730545 3_4:-55559432 Msa0507920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGAAAAATTTCATA+TGG + chr3_4:55561757-55561776 None:intergenic 10.0%
!!! ATATGAAATTTTTCTTAATT+AGG - chr3_4:55561756-55561775 Msa0507920:CDS 10.0%
!! TTGTTTATGATATAATAATA+GGG + chr3_4:55561870-55561889 None:intergenic 10.0%
!! TTTGTTTATGATATAATAAT+AGG + chr3_4:55561871-55561890 None:intergenic 10.0%
!! AAAATTGATGTAAAAATTAA+GGG + chr3_4:55561904-55561923 None:intergenic 10.0%
!! TAAAATTGATGTAAAAATTA+AGG + chr3_4:55561905-55561924 None:intergenic 10.0%
!! AAAAAACTATCTAAATAAAA+TGG + chr3_4:55562217-55562236 None:intergenic 10.0%
!! AGAAAAAAATCAGAAAAAAA+TGG - chr3_4:55559197-55559216 Msa0507920:three_prime_UTR 15.0%
!! TCAAAAAATTTACACAAAAA+CGG + chr3_4:55559755-55559774 None:intergenic 15.0%
!!! ATTTTATTGTATTTGAGAAT+TGG - chr3_4:55559790-55559809 Msa0507920:CDS 15.0%
!!! TTTTATTGTATTTGAGAATT+GGG - chr3_4:55559791-55559810 Msa0507920:CDS 15.0%
!! AATATGCAATAATTGAAAAT+TGG + chr3_4:55562042-55562061 None:intergenic 15.0%
!!! AAAGTTTTTGAGGTTTATAA+CGG + chr3_4:55559061-55559080 None:intergenic 20.0%
!!! CACAATTAATTTGTAAAACT+AGG + chr3_4:55559997-55560016 None:intergenic 20.0%
!!! ACAAATTAATTGTGATTTTG+AGG - chr3_4:55560003-55560022 Msa0507920:CDS 20.0%
!! AGTTACAATCATTAATATTG+CGG - chr3_4:55560086-55560105 Msa0507920:CDS 20.0%
!!! ATTAGGATTTTCTACAATTA+GGG + chr3_4:55560210-55560229 None:intergenic 20.0%
!! TATGTAAGTTATGAAATTGA+TGG - chr3_4:55561081-55561100 Msa0507920:intron 20.0%
!!! ATATTGATTCTTCAAAAAAG+AGG + chr3_4:55561500-55561519 None:intergenic 20.0%
!!! TATTTAATGCATAATTTTGC+AGG - chr3_4:55561546-55561565 Msa0507920:intron 20.0%
!!! TACTTGATAATCATTCTAAT+TGG + chr3_4:55561715-55561734 None:intergenic 20.0%
!! TTGTTGAAATCTGAACTTTT+TGG - chr3_4:55559486-55559505 Msa0507920:intron 25.0%
! AAGATAAAAACTTACCTTGT+GGG + chr3_4:55559721-55559740 None:intergenic 25.0%
! AAAGATAAAAACTTACCTTG+TGG + chr3_4:55559722-55559741 None:intergenic 25.0%
! TAATCAAATCCTACAAATCA+AGG + chr3_4:55559832-55559851 None:intergenic 25.0%
!!! TTGATTTGTAGGATTTGATT+AGG - chr3_4:55559831-55559850 Msa0507920:CDS 25.0%
!!! AAAGTGTATATCGATTTTGT+AGG - chr3_4:55559857-55559876 Msa0507920:intron 25.0%
! AACATAAGAAACTGTTATGT+TGG - chr3_4:55560168-55560187 Msa0507920:intron 25.0%
!!! ACAATTAGGGTTTTAAATAG+AGG + chr3_4:55560197-55560216 None:intergenic 25.0%
!! GATTAGGATTTTCTACAATT+AGG + chr3_4:55560211-55560230 None:intergenic 25.0%
! AATTGTAGAAAATCCTAATC+TGG - chr3_4:55560211-55560230 Msa0507920:intron 25.0%
!!! AACTCTTTTAAATCTAGAGT+TGG + chr3_4:55560264-55560283 None:intergenic 25.0%
! CAAAGTTTAAGTATTTGAGA+GGG - chr3_4:55560312-55560331 Msa0507920:intron 25.0%
! ATTGAACATATATCTTTGTG+TGG - chr3_4:55560616-55560635 Msa0507920:intron 25.0%
! ATACTAAACAGATAGATAGA+AGG + chr3_4:55561219-55561238 None:intergenic 25.0%
! TTACTCACAAAATCAAATCA+TGG - chr3_4:55561621-55561640 Msa0507920:intron 25.0%
! TCAAAAGCTTTACAATTTGT+AGG + chr3_4:55562303-55562322 None:intergenic 25.0%
! GAAGTTGTTGTTGAGTAAAA+TGG + chr3_4:55559123-55559142 None:intergenic 30.0%
AACCTCAACATATTCTTACT+CGG + chr3_4:55559576-55559595 None:intergenic 30.0%
GAATATGTTGAGGTTTAAGA+CGG - chr3_4:55559581-55559600 Msa0507920:CDS 30.0%
TCATTTCTTCCAAATATCGA+AGG + chr3_4:55559639-55559658 None:intergenic 30.0%
TCGATATTTGGAAGAAATGA+TGG - chr3_4:55559639-55559658 Msa0507920:intron 30.0%
CGATATTTGGAAGAAATGAT+GGG - chr3_4:55559640-55559659 Msa0507920:intron 30.0%
!!! AAATGATGGGTTTTGTAATG+AGG - chr3_4:55559653-55559672 Msa0507920:intron 30.0%
!!! AATGATGGGTTTTGTAATGA+GGG - chr3_4:55559654-55559673 Msa0507920:intron 30.0%
AGATAAAAACTTACCTTGTG+GGG + chr3_4:55559720-55559739 None:intergenic 30.0%
! GAGAATTGGGTTAGATAATA+TGG - chr3_4:55559804-55559823 Msa0507920:CDS 30.0%
!! AATATGGTACCTTGATTTGT+AGG - chr3_4:55559820-55559839 Msa0507920:CDS 30.0%
TATGCTATGACTCTATCTTA+GGG + chr3_4:55559918-55559937 None:intergenic 30.0%
AAAACTAGGATTGTCATGAT+TGG + chr3_4:55559983-55560002 None:intergenic 30.0%
AATCAACTCATAACCAGATT+AGG + chr3_4:55560227-55560246 None:intergenic 30.0%
CCTCTCAAATACTTAAACTT+TGG + chr3_4:55560314-55560333 None:intergenic 30.0%
CCAAAGTTTAAGTATTTGAG+AGG - chr3_4:55560311-55560330 Msa0507920:intron 30.0%
TAAAAGTCATCTTGAAGTGA+AGG + chr3_4:55560452-55560471 None:intergenic 30.0%
! TGACTTTTACTTGAATCTTG+TGG - chr3_4:55560463-55560482 Msa0507920:CDS 30.0%
TTTACTTGAATCTTGTGGAT+TGG - chr3_4:55560468-55560487 Msa0507920:CDS 30.0%
! TATATCTTTGTGTGGTTTTC+AGG - chr3_4:55560624-55560643 Msa0507920:intron 30.0%
ATTTGTACCAATGGATATGA+AGG + chr3_4:55560716-55560735 None:intergenic 30.0%
TTCATATCCATTGGTACAAA+TGG - chr3_4:55560715-55560734 Msa0507920:CDS 30.0%
CAAATCAAAGTAAGCTAACA+AGG + chr3_4:55560757-55560776 None:intergenic 30.0%
! CTTGTTAGCTTACTTTGATT+TGG - chr3_4:55560755-55560774 Msa0507920:intron 30.0%
CAATCATCAAATCAAACACA+TGG + chr3_4:55560790-55560809 None:intergenic 30.0%
! GTCAAATGGTTTTTATACCT+CGG + chr3_4:55561028-55561047 None:intergenic 30.0%
! TTTTTATCCTTCAACTTGAC+AGG - chr3_4:55561107-55561126 Msa0507920:intron 30.0%
! TGTTTTATATGAGCAGCTAT+TGG - chr3_4:55561273-55561292 Msa0507920:intron 30.0%
! TTACATTTTTACTCCAAGCA+AGG + chr3_4:55561579-55561598 None:intergenic 30.0%
AATAATACCTTTGCTAGTGA+TGG + chr3_4:55561658-55561677 None:intergenic 30.0%
TAGGGAATTATGTTGTTATG+TGG + chr3_4:55561852-55561871 None:intergenic 30.0%
! TTACAGGTGTTTTCATTGAT+GGG + chr3_4:55562005-55562024 None:intergenic 30.0%
! GAGTTCTTTTAAGCAATACT+AGG + chr3_4:55562070-55562089 None:intergenic 30.0%
CTGAAGCAAAAAGAAAAGTT+AGG + chr3_4:55562094-55562113 None:intergenic 30.0%
! CTAACTTTTCTTTTTGCTTC+AGG - chr3_4:55562092-55562111 Msa0507920:CDS 30.0%
GCTTATGAATCATCTGATTT+GGG + chr3_4:55562157-55562176 None:intergenic 30.0%
TGCTTATGAATCATCTGATT+TGG + chr3_4:55562158-55562177 None:intergenic 30.0%
CTCGTGTTTGGTATATAATA+TGG + chr3_4:55562276-55562295 None:intergenic 30.0%
! AGACAGAGAGAAAGTTTTTG+AGG + chr3_4:55559071-55559090 None:intergenic 35.0%
TCACCACAAGCAAAAAAATC+AGG - chr3_4:55559222-55559241 Msa0507920:three_prime_UTR 35.0%
!!! AGACCTGATTTTTTTGCTTG+TGG + chr3_4:55559228-55559247 None:intergenic 35.0%
TATGAATCTGTCACTACACT+TGG + chr3_4:55559376-55559395 None:intergenic 35.0%
TCTTCAAGACTGCATACATT+CGG - chr3_4:55559408-55559427 Msa0507920:CDS 35.0%
ATTAATCGATAACCAGTCAC+CGG - chr3_4:55559431-55559450 Msa0507920:CDS 35.0%
TCATTACTCCCTTCTTTAAC+CGG + chr3_4:55559453-55559472 None:intergenic 35.0%
GGAGTAATGAGGCTTATAAT+AGG - chr3_4:55559463-55559482 Msa0507920:intron 35.0%
AATATCGAAGGCGAAGAAAA+AGG + chr3_4:55559627-55559646 None:intergenic 35.0%
! TTTTCTTCGCCTTCGATATT+TGG - chr3_4:55559627-55559646 Msa0507920:intron 35.0%
ATGACTCTATCTTAGGGTTT+AGG + chr3_4:55559912-55559931 None:intergenic 35.0%
CTATGCTATGACTCTATCTT+AGG + chr3_4:55559919-55559938 None:intergenic 35.0%
TGTCATTACAACGTAAGACT+AGG - chr3_4:55560039-55560058 Msa0507920:CDS 35.0%
GTCATTACAACGTAAGACTA+GGG - chr3_4:55560040-55560059 Msa0507920:CDS 35.0%
!!! CGTAAGACTAGGGTTTTAAA+TGG - chr3_4:55560050-55560069 Msa0507920:CDS 35.0%
!!! AAGACTAGGGTTTTAAATGG+AGG - chr3_4:55560053-55560072 Msa0507920:CDS 35.0%
!! AACTGCTAGAGTATTTTGTG+AGG + chr3_4:55560495-55560514 None:intergenic 35.0%
TCACAAAATACTCTAGCAGT+TGG - chr3_4:55560494-55560513 Msa0507920:CDS 35.0%
ATGATTATGAACTTCCCAAG+TGG - chr3_4:55560566-55560585 Msa0507920:intron 35.0%
! TTGTGATATTGTTGCCACTT+GGG + chr3_4:55560583-55560602 None:intergenic 35.0%
ATATCCATTGGTACAAATGG+TGG - chr3_4:55560718-55560737 Msa0507920:CDS 35.0%
!!! AAGAGAGCTTTTTTGCCTTA+TGG - chr3_4:55560821-55560840 Msa0507920:intron 35.0%
TTGCCTTATGGTAACAGATT+TGG - chr3_4:55560833-55560852 Msa0507920:intron 35.0%
TGCCTTATGGTAACAGATTT+GGG - chr3_4:55560834-55560853 Msa0507920:intron 35.0%
ATCCCAAATCTGTTACCATA+AGG + chr3_4:55560839-55560858 None:intergenic 35.0%
TTATGGTAACAGATTTGGGA+TGG - chr3_4:55560838-55560857 Msa0507920:intron 35.0%
! GTTTTTATACCTCGGATTTG+TGG + chr3_4:55561020-55561039 None:intergenic 35.0%
! TTCTGGTGGTAATGATAATC+AGG - chr3_4:55561170-55561189 Msa0507920:intron 35.0%
TATATGAGCAGCTATTGGTA+TGG - chr3_4:55561278-55561297 Msa0507920:intron 35.0%
AAGAGGTAAGAAAGTAAACC+TGG + chr3_4:55561483-55561502 None:intergenic 35.0%
TGATAAGATGCTCTCTTGTT+TGG + chr3_4:55561523-55561542 None:intergenic 35.0%
CACAAAATCAAATCATGGTG+TGG - chr3_4:55561626-55561645 Msa0507920:intron 35.0%
GAAATATCCATCACTAGCAA+AGG - chr3_4:55561648-55561667 Msa0507920:intron 35.0%
! AATTAGGTTGCAACTCTAAC+TGG - chr3_4:55561772-55561791 Msa0507920:CDS 35.0%
! CTTACAGGTGTTTTCATTGA+TGG + chr3_4:55562006-55562025 None:intergenic 35.0%
AAAGGCCTGTATCTTTAACT+GGG + chr3_4:55562119-55562138 None:intergenic 35.0%
TTTGTAGGTTTACTCGTGTT+TGG + chr3_4:55562288-55562307 None:intergenic 35.0%
AATCTCTCTGTGAGAGGAAA+GGG + chr3_4:55559098-55559117 None:intergenic 40.0%
TTATTGTTGACATCCCTGCT+GGG + chr3_4:55559257-55559276 None:intergenic 40.0%
!! GTGTTGATAGCGTTTCAAGA+CGG + chr3_4:55559287-55559306 None:intergenic 40.0%
!! TTGGAGGATTTTGATGGAGA+GGG + chr3_4:55559357-55559376 None:intergenic 40.0%
! CTACACTTGGAGGATTTTGA+TGG + chr3_4:55559363-55559382 None:intergenic 40.0%
AGTCTTGAAGATGATCTGCA+AGG + chr3_4:55559399-55559418 None:intergenic 40.0%
GGTTAAAGAAGGGAGTAATG+AGG - chr3_4:55559452-55559471 Msa0507920:intron 40.0%
GAAGAAGGAGAAGCAAAATC+AGG + chr3_4:55559513-55559532 None:intergenic 40.0%
GTCCGAGTAAGAATATGTTG+AGG - chr3_4:55559571-55559590 Msa0507920:intron 40.0%
AGTGAGTGAGACAGTGTATA+AGG - chr3_4:55559944-55559963 Msa0507920:CDS 40.0%
AATACTCTAGCAGTTGGACT+TGG - chr3_4:55560500-55560519 Msa0507920:CDS 40.0%
TTGGCACTTGTGTTTATCTC+TGG - chr3_4:55560519-55560538 Msa0507920:CDS 40.0%
GTTGTGATATTGTTGCCACT+TGG + chr3_4:55560584-55560603 None:intergenic 40.0%
GTAACTAAGCTGTGTGACTT+GGG - chr3_4:55560646-55560665 Msa0507920:intron 40.0%
TAACTAAGCTGTGTGACTTG+GGG - chr3_4:55560647-55560666 Msa0507920:intron 40.0%
ACAGAACAGACACCATCATA+AGG + chr3_4:55560673-55560692 None:intergenic 40.0%
TTGACCACCATTTGTACCAA+TGG + chr3_4:55560725-55560744 None:intergenic 40.0%
TACAAATGGTGGTCAAGTTC+AGG - chr3_4:55560729-55560748 Msa0507920:CDS 40.0%
GGATGGTACTAAATGCAAGA+AGG - chr3_4:55560855-55560874 Msa0507920:intron 40.0%
ATGCAAGAAGGTCAGAACAA+TGG - chr3_4:55560867-55560886 Msa0507920:CDS 40.0%
TGCAAGAAGGTCAGAACAAT+GGG - chr3_4:55560868-55560887 Msa0507920:CDS 40.0%
!!! AATTCTCGCATTTTGGCTTC+AGG - chr3_4:55560925-55560944 Msa0507920:CDS 40.0%
ACATACTTCAGCATGACATG+AGG - chr3_4:55560962-55560981 Msa0507920:CDS 40.0%
CATACTTCAGCATGACATGA+GGG - chr3_4:55560963-55560982 Msa0507920:CDS 40.0%
GACTTTATTGGCAAGCTTGT+CGG - chr3_4:55560994-55561013 Msa0507920:intron 40.0%
CTCAATGCGTATCTGTCAAA+TGG + chr3_4:55561042-55561061 None:intergenic 40.0%
! GACAGGTTTGTGGATTGAAA+TGG - chr3_4:55561124-55561143 Msa0507920:intron 40.0%
ACTCTCAACAACCAACTTTG+AGG - chr3_4:55561308-55561327 Msa0507920:intron 40.0%
TGTCAACAGAGTTCAATTGG+TGG + chr3_4:55561453-55561472 None:intergenic 40.0%
CAGTGTCAACAGAGTTCAAT+TGG + chr3_4:55561456-55561475 None:intergenic 40.0%
CAATTGAACTCTGTTGACAC+TGG - chr3_4:55561454-55561473 Msa0507920:intron 40.0%
AATGAGCTAGTGAGTACACA+TGG - chr3_4:55561598-55561617 Msa0507920:intron 40.0%
CAATTGCAGACAATAGTGAC+TGG - chr3_4:55561943-55561962 Msa0507920:CDS 40.0%
AAGGCCTGTATCTTTAACTG+GGG + chr3_4:55562118-55562137 None:intergenic 40.0%
CAAAGGCCTGTATCTTTAAC+TGG + chr3_4:55562120-55562139 None:intergenic 40.0%
CAGTTAAAGATACAGGCCTT+TGG - chr3_4:55562118-55562137 Msa0507920:CDS 40.0%
!! TGAATCATCTGATTTGGGTG+CGG + chr3_4:55562152-55562171 None:intergenic 40.0%
TGATTCATAAGCAGCAAGCA+TGG - chr3_4:55562165-55562184 Msa0507920:CDS 40.0%
GAATCTCTCTGTGAGAGGAA+AGG + chr3_4:55559099-55559118 None:intergenic 45.0%
GTTATTGTTGACATCCCTGC+TGG + chr3_4:55559258-55559277 None:intergenic 45.0%
! TGATAGCGTTTCAAGACGGA+GGG + chr3_4:55559283-55559302 None:intergenic 45.0%
!! TTGATAGCGTTTCAAGACGG+AGG + chr3_4:55559284-55559303 None:intergenic 45.0%
!! CTTGGAGGATTTTGATGGAG+AGG + chr3_4:55559358-55559377 None:intergenic 45.0%
GAATCTGTCACTACACTTGG+AGG + chr3_4:55559373-55559392 None:intergenic 45.0%
! AACCAGTCACCGGTTAAAGA+AGG - chr3_4:55559441-55559460 Msa0507920:CDS 45.0%
! ACCAGTCACCGGTTAAAGAA+GGG - chr3_4:55559442-55559461 Msa0507920:CDS 45.0%
TTCTTACTCGGACTCACCAA+CGG + chr3_4:55559564-55559583 None:intergenic 45.0%
! AGGTTTAAGACGGAGAGTTG+TGG - chr3_4:55559591-55559610 Msa0507920:CDS 45.0%
GTCTTAGGAACTTTCCTAGG+AGG + chr3_4:55559696-55559715 None:intergenic 45.0%
!!! AGGGTTTTAAATGGAGGTCG+CGG - chr3_4:55560059-55560078 Msa0507920:CDS 45.0%
TGATGCGACGTGAAAATCAG+TGG - chr3_4:55560130-55560149 Msa0507920:intron 45.0%
GGTAACTAAGCTGTGTGACT+TGG - chr3_4:55560645-55560664 Msa0507920:intron 45.0%
GAGGGTTCCTTCATATCCAT+TGG - chr3_4:55560706-55560725 Msa0507920:CDS 45.0%
AAGAAGGTCAGAACAATGGG+AGG - chr3_4:55560871-55560890 Msa0507920:CDS 45.0%
AGAAGGTCAGAACAATGGGA+GGG - chr3_4:55560872-55560891 Msa0507920:CDS 45.0%
TCAAACAAGAACCGGTGTCT+TGG - chr3_4:55560897-55560916 Msa0507920:CDS 45.0%
AGAATTCCATGCCAAGACAC+CGG + chr3_4:55560911-55560930 None:intergenic 45.0%
! GGCATGGAATTCTCGCATTT+TGG - chr3_4:55560918-55560937 Msa0507920:CDS 45.0%
!!! CATTTTGGCTTCAGGAAGCA+GGG - chr3_4:55560933-55560952 Msa0507920:CDS 45.0%
AGGGTTCCAAGCGACTTTAT+TGG - chr3_4:55560982-55561001 Msa0507920:intron 45.0%
AGCTTGCCAATAAAGTCGCT+TGG + chr3_4:55560991-55561010 None:intergenic 45.0%
!! CCACAAACCTGTCAAGTTGA+AGG + chr3_4:55561117-55561136 None:intergenic 45.0%
CCTTCAACTTGACAGGTTTG+TGG - chr3_4:55561114-55561133 Msa0507920:intron 45.0%
TGAAATGGTCCTGTGATGAC+CGG - chr3_4:55561139-55561158 Msa0507920:intron 45.0%
AAGGAAGCAATTGTGTCTGC+TGG + chr3_4:55561200-55561219 None:intergenic 45.0%
TGCTCTGTAAGCCTCAAAGT+TGG + chr3_4:55561322-55561341 None:intergenic 45.0%
CTGATCGGTGTATTCGTTTC+TGG - chr3_4:55561413-55561432 Msa0507920:intron 45.0%
!! CGTTTCTGGAACACGACAAA+TGG - chr3_4:55561427-55561446 Msa0507920:intron 45.0%
GGTATAGTACTCTCATGCTG+TGG + chr3_4:55561798-55561817 None:intergenic 45.0%
TACCTTGCAATGTCTCCTGA+TGG - chr3_4:55561814-55561833 Msa0507920:CDS 45.0%
TGGACATTTACCTGACCATC+AGG + chr3_4:55561832-55561851 None:intergenic 45.0%
AGACAATAGTGACTGGTGCT+GGG - chr3_4:55561950-55561969 Msa0507920:CDS 45.0%
! CACCTGTAAGCATTGCATTG+TGG - chr3_4:55562016-55562035 Msa0507920:CDS 45.0%
ATGGCGAATCTCTCTGTGAG+AGG + chr3_4:55559104-55559123 None:intergenic 50.0%
!! ATGGAGAGGGTGTTGATGAG+AGG + chr3_4:55559344-55559363 None:intergenic 50.0%
TCCCTTCTTTAACCGGTGAC+TGG + chr3_4:55559446-55559465 None:intergenic 50.0%
TCTCCTTCTTCTTCTCCTGC+AGG - chr3_4:55559522-55559541 Msa0507920:intron 50.0%
CAACCTGCAGGAGAAGAAGA+AGG + chr3_4:55559528-55559547 None:intergenic 50.0%
TCTTCTTCTCCTGCAGGTTG+TGG - chr3_4:55559528-55559547 Msa0507920:intron 50.0%
GGCGAAGAAAAAGGCGAAGA+AGG + chr3_4:55559618-55559637 None:intergenic 50.0%
ACTTTCCTAGGAGGCTTAGG+AGG + chr3_4:55559687-55559706 None:intergenic 50.0%
GGAACTTTCCTAGGAGGCTT+AGG + chr3_4:55559690-55559709 None:intergenic 50.0%
GGCGTCTTAGGAACTTTCCT+AGG + chr3_4:55559699-55559718 None:intergenic 50.0%
! TGTGACTTGGGGCCTTATGA+TGG - chr3_4:55560658-55560677 Msa0507920:intron 50.0%
ATGGTGTCTGTTCTGTCCAG+TGG - chr3_4:55560677-55560696 Msa0507920:CDS 50.0%
GGATATGAAGGAACCCTCCT+TGG + chr3_4:55560704-55560723 None:intergenic 50.0%
!! GGAGGGCATCAAACAAGAAC+CGG - chr3_4:55560889-55560908 Msa0507920:CDS 50.0%
!!! GCATTTTGGCTTCAGGAAGC+AGG - chr3_4:55560932-55560951 Msa0507920:CDS 50.0%
GAAATGGTCCTGTGATGACC+GGG - chr3_4:55561140-55561159 Msa0507920:intron 50.0%
TACCACCAGAAGCAAGTTCC+CGG + chr3_4:55561161-55561180 None:intergenic 50.0%
CTGCTGTGAAAGCCATTGCT+TGG - chr3_4:55561347-55561366 Msa0507920:intron 50.0%
CTGATGAGGTGACCAAGCAA+TGG + chr3_4:55561362-55561381 None:intergenic 50.0%
ACGAGAAGGTTGCTCTGATG+AGG + chr3_4:55561376-55561395 None:intergenic 50.0%
CAGAGCAACCTTCTCGTATC+TGG - chr3_4:55561379-55561398 Msa0507920:intron 50.0%
AGCAACCTTCTCGTATCTGG+AGG - chr3_4:55561382-55561401 Msa0507920:intron 50.0%
AACCTTCTCGTATCTGGAGG+TGG - chr3_4:55561385-55561404 Msa0507920:intron 50.0%
TTCCACCTCCAGATACGAGA+AGG + chr3_4:55561390-55561409 None:intergenic 50.0%
TGCAGGTGTGTAACCTTGCT+TGG - chr3_4:55561563-55561582 Msa0507920:intron 50.0%
GACCATCAGGAGACATTGCA+AGG + chr3_4:55561819-55561838 None:intergenic 50.0%
TGCAATGTCTCCTGATGGTC+AGG - chr3_4:55561819-55561838 Msa0507920:CDS 50.0%
CAGACAATAGTGACTGGTGC+TGG - chr3_4:55561949-55561968 Msa0507920:CDS 50.0%
! GACAATAGTGACTGGTGCTG+GGG - chr3_4:55561951-55561970 Msa0507920:CDS 50.0%
GGCCACAATGCAATGCTTAC+AGG + chr3_4:55562021-55562040 None:intergenic 50.0%
CAGGCCCCAGTTAAAGATAC+AGG - chr3_4:55562111-55562130 Msa0507920:CDS 50.0%
GATACAGGCCTTTGGTCACT+AGG - chr3_4:55562126-55562145 Msa0507920:CDS 50.0%
AGCAGCAAGCATGGAAGATG+AGG - chr3_4:55562174-55562193 Msa0507920:CDS 50.0%
TCAGGTCTAAACCTCCCAGC+AGG - chr3_4:55559240-55559259 Msa0507920:exon 55.0%
CAGGTCTAAACCTCCCAGCA+GGG - chr3_4:55559241-55559260 Msa0507920:exon 55.0%
TTGTTGACATCCCTGCTGGG+AGG + chr3_4:55559254-55559273 None:intergenic 55.0%
TAGCGTTTCAAGACGGAGGG+AGG + chr3_4:55559280-55559299 None:intergenic 55.0%
! GAGAGGTTTGAGATCGCACG+AGG + chr3_4:55559327-55559346 None:intergenic 55.0%
TCTCCTGCAGGTTGTGGTGT+TGG - chr3_4:55559534-55559553 Msa0507920:intron 55.0%
GAACCAACACCACAACCTGC+AGG + chr3_4:55559540-55559559 None:intergenic 55.0%
!! TTGTGGTGTTGGTTCGCCGT+TGG - chr3_4:55559545-55559564 Msa0507920:intron 55.0%
CTACTCCTCCTAAGCCTCCT+AGG - chr3_4:55559679-55559698 Msa0507920:intron 55.0%
AGTTCCTAAGACGCCCCACA+AGG - chr3_4:55559704-55559723 Msa0507920:intron 55.0%
! CTTACCTTGTGGGGCGTCTT+AGG + chr3_4:55559711-55559730 None:intergenic 55.0%
CTGTGTGCAATGCTGTGTGC+AGG - chr3_4:55560415-55560434 Msa0507920:CDS 55.0%
GCAATGCTGTGTGCAGGTTC+TGG - chr3_4:55560421-55560440 Msa0507920:CDS 55.0%
CTGTTCTGTCCAGTGGACCA+AGG - chr3_4:55560684-55560703 Msa0507920:CDS 55.0%
TTCTGTCCAGTGGACCAAGG+AGG - chr3_4:55560687-55560706 Msa0507920:CDS 55.0%
TCTGTCCAGTGGACCAAGGA+GGG - chr3_4:55560688-55560707 Msa0507920:CDS 55.0%
CAAGAACCGGTGTCTTGGCA+TGG - chr3_4:55560902-55560921 Msa0507920:CDS 55.0%
TGGCTTCAGGAAGCAGGGAT+AGG - chr3_4:55560938-55560957 Msa0507920:CDS 55.0%
AGCAAGTTCCCGGTCATCAC+AGG + chr3_4:55561151-55561170 None:intergenic 55.0%
! GATGACCGGGAACTTGCTTC+TGG - chr3_4:55561153-55561172 Msa0507920:intron 55.0%
CTGGAGGTGGAACTGCTGAT+CGG - chr3_4:55561398-55561417 Msa0507920:intron 55.0%
CTCTGTTGACACTGGAAGCC+AGG - chr3_4:55561462-55561481 Msa0507920:intron 55.0%
! GGGATGAGACTCTGCGGTTT+TGG - chr3_4:55561971-55561990 Msa0507920:CDS 55.0%
ACGAGGCGAAGCGGAAGAAG+GGG + chr3_4:55559310-55559329 None:intergenic 60.0%
CACGAGGCGAAGCGGAAGAA+GGG + chr3_4:55559311-55559330 None:intergenic 60.0%
TGAGATCGCACGAGGCGAAG+CGG + chr3_4:55559319-55559338 None:intergenic 60.0%
AGGAACCCTCCTTGGTCCAC+TGG + chr3_4:55560696-55560715 None:intergenic 60.0%
GCTTGTCGGCCACAAATCCG+AGG - chr3_4:55561008-55561027 Msa0507920:intron 60.0%
! GACCGGGAACTTGCTTCTGG+TGG - chr3_4:55561156-55561175 Msa0507920:intron 60.0%
GTGCTGGGGATGAGACTCTG+CGG - chr3_4:55561965-55561984 Msa0507920:CDS 60.0%
CGAGGCGAAGCGGAAGAAGG+GGG + chr3_4:55559309-55559328 None:intergenic 65.0%
GCACGAGGCGAAGCGGAAGA+AGG + chr3_4:55559312-55559331 None:intergenic 65.0%
GGGTGCGGCCTAGTGACCAA+AGG + chr3_4:55562137-55562156 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55559054 55562365 55559054 ID=Msa0507920;Name=Msa0507920
chr3_4 mRNA 55559054 55562365 55559054 ID=Msa0507920-mRNA-1;Parent=Msa0507920;Name=Msa0507920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=162|1|1|1|1|1|10|198|487
chr3_4 exon 55559054 55559305 55559054 ID=Msa0507920-mRNA-1:exon:12382;Parent=Msa0507920-mRNA-1
chr3_4 exon 55559399 55559467 55559399 ID=Msa0507920-mRNA-1:exon:12381;Parent=Msa0507920-mRNA-1
chr3_4 exon 55559579 55559641 55559579 ID=Msa0507920-mRNA-1:exon:12380;Parent=Msa0507920-mRNA-1
chr3_4 exon 55559750 55559851 55559750 ID=Msa0507920-mRNA-1:exon:12379;Parent=Msa0507920-mRNA-1
chr3_4 exon 55559936 55560130 55559936 ID=Msa0507920-mRNA-1:exon:12378;Parent=Msa0507920-mRNA-1
chr3_4 exon 55560228 55560290 55560228 ID=Msa0507920-mRNA-1:exon:12377;Parent=Msa0507920-mRNA-1
chr3_4 exon 55560390 55560569 55560390 ID=Msa0507920-mRNA-1:exon:12376;Parent=Msa0507920-mRNA-1
chr3_4 exon 55560669 55560773 55560669 ID=Msa0507920-mRNA-1:exon:12375;Parent=Msa0507920-mRNA-1
chr3_4 exon 55560860 55560982 55560860 ID=Msa0507920-mRNA-1:exon:12374;Parent=Msa0507920-mRNA-1
chr3_4 exon 55561694 55562365 55561694 ID=Msa0507920-mRNA-1:exon:12373;Parent=Msa0507920-mRNA-1
chr3_4 five_prime_UTR 55562204 55562365 55562204 ID=Msa0507920-mRNA-1:five_prime_utr;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55561694 55562203 55561694 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55560860 55560982 55560860 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55560669 55560773 55560669 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55560390 55560569 55560390 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55560228 55560290 55560228 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55559936 55560130 55559936 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55559750 55559851 55559750 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55559579 55559641 55559579 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55559399 55559467 55559399 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 CDS 55559252 55559305 55559252 ID=Msa0507920-mRNA-1:cds;Parent=Msa0507920-mRNA-1
chr3_4 three_prime_UTR 55559054 55559251 55559054 ID=Msa0507920-mRNA-1:three_prime_utr;Parent=Msa0507920-mRNA-1
Gene Sequence

>Msa0507920

ATGGAGTCACCACAAGCAAAAAAATCAGGTCTAAACCTCCCAGCAGGGATGTCAACAATAACCTCCCTCCGTCTTGAAACGCTATCAACACCCCCTTCTTCCGCTTCGCCTCGTGCGATCTCAAACCTCTCATCAACACCCTCTCCATCAAAATCCTCCAAGTGTAGTGACAGATTCATACCTTGCAGATCATCTTCAAGACTGCATACATTCGGATTAATCGATAACCAGTCACCGGTTAAAGAAGGGAGTAATGAGGCTTATAATAGGTTGTTGAAATCTGAACTTTTTGGACCTGATTTTGCTTCTCCTTCTTCTTCTCCTGCAGGTTGTGGTGTTGGTTCGCCGTTGGTGAGTCCGAGTAAGAATATGTTGAGGTTTAAGACGGAGAGTTGTGGACCTTCTTCGCCTTTTTCTTCGCCTTCGATATTTGGAAGAAATGATGGGTTTTGTAATGAGGGTTCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCTAAGACGCCCCACAAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGATTGGTCCTCACAAAATACTCTAGCAGTTGGACTTGGCACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAAAGTAACTAAGCTGTGTGACTTGGGGCCTTATGATGGTGTCTGTTCTGTCCAGTGGACCAAGGAGGGTTCCTTCATATCCATTGGTACAAATGGTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGAAGCAGGGATAGGAACATACTTCAGCATGACATGAGGGTTCCAAGCGACTTTATTGGCAAGCTTGTCGGCCACAAATCCGAGGTTTGTGGATTGAAATGGTCCTGTGATGACCGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTATTGGTATGGAATCAGCACTCTCAACAACCAACTTTGAGGCTTACAGAGCACACTGCTGCTGTGAAAGCCATTGCTTGGTCACCTCATCAGAGCAACCTTCTCGTATCTGGAGGTGGAACTGCTGATCGGTGTATTCGTTTCTGGAACACGACAAATGGCCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTGAGTACACATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACTGGCCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATGTTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGCACCCAAATCAGATGA

Protein sequence

>Msa0507920

MESPQAKKSGLNLPAGMSTITSLRLETLSTPPSSASPRAISNLSSTPSPSKSSKCSDRFIPCRSSSRLHTFGLIDNQSPVKEGSNEAYNRLLKSELFGPDFASPSSSPAGCGVGSPLVSPSKNMLRFKTESCGPSSPFSSPSIFGRNDGFCNEGSTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNGGQVQIWDGTKCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR*