AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1075020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075020 MtrunA17_Chr7g0258191 95.816 239 9 1 1 239 1 238 9.47e-157 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1075020 AT2G42260.2 48.333 180 81 6 64 239 88 259 1.73e-38 135
Msa1075020 AT2G42260.1 48.333 180 81 6 64 239 88 259 1.73e-38 135
Msa1075020 AT3G57860.1 40.625 256 122 10 1 239 1 243 2.26e-38 134

Find 91 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCTTCTGATGATTTAT+AGG 0.216006 7_2:+73122786 Msa1075020:three_prime_UTR
TCATCTTCTGATGATTTATA+GGG 0.272386 7_2:+73122787 Msa1075020:three_prime_UTR
TTCAGCTTGATGCAGGATTT+TGG 0.284785 7_2:-73122446 None:intergenic
GGAGATGAAGAAGACCTATT+TGG 0.288155 7_2:-73120958 None:intergenic
AGCAAATGGGAAAGGAGATT+TGG 0.297139 7_2:+73122753 Msa1075020:three_prime_UTR
TTGATTAAGAGAAAAGAAAT+AGG 0.317101 7_2:-73122995 None:intergenic
TTTCTCTTAATCAAATTGTT+TGG 0.327945 7_2:+73123004 Msa1075020:three_prime_UTR
GCTTCATTCTCTGCTGCTAC+TGG 0.357062 7_2:+73122395 Msa1075020:CDS
TGAGGTTCGTTAGTGTGGTT+AGG 0.363912 7_2:-73121022 None:intergenic
AGGAGATATCTTAGAGCAAA+TGG 0.372197 7_2:+73122739 Msa1075020:three_prime_UTR
ATCAAGCTGAAAACACCTTA+TGG 0.387510 7_2:+73122458 Msa1075020:CDS
ACGCGGCGGTCTCGTGCTTC+CGG 0.391950 7_2:-73121149 None:intergenic
TGAGAGAAGGAGGGAGAGAC+AGG 0.393153 7_2:+73122304 Msa1075020:CDS
AAGTAGAAGATTACACAAAC+TGG 0.401114 7_2:-73122845 None:intergenic
TTTGGAACTTTACTTCCATA+AGG 0.419855 7_2:-73122473 None:intergenic
GCAAATGGGAAAGGAGATTT+GGG 0.422325 7_2:+73122754 Msa1075020:three_prime_UTR
TTTAGGCGATTGAGAGAAGG+AGG 0.446441 7_2:+73122294 Msa1075020:intron
TGCGCGTCGTTCTCCAGGTT+CGG 0.449151 7_2:+73121328 Msa1075020:CDS
ATATCCTGCAACGGCGTCCT+CGG 0.451746 7_2:-73121431 None:intergenic
GTACCCGAGGACGCCGTTGC+AGG 0.452614 7_2:+73121427 Msa1075020:CDS
ACTGAGGAAATTGAGCAAAC+TGG 0.455510 7_2:+73122329 Msa1075020:CDS
CGATCTGAACCGGCGGTGAA+TGG 0.459393 7_2:-73121263 None:intergenic
ACGAGCAACTTCGCGACGTA+CGG 0.459911 7_2:-73121306 None:intergenic
GGGTTTGAATAGAATGAAGT+AGG 0.460822 7_2:-73121061 None:intergenic
TTCACGCTCAATTATATCAA+TGG 0.466579 7_2:-73122579 None:intergenic
CCACGGCGAGTGGTGGTTGG+AGG 0.472234 7_2:-73121359 None:intergenic
GCGGTGAATGGAGCGGGTGC+AGG 0.472928 7_2:-73121251 None:intergenic
TCTTGAATCACGGCGGAGAA+AGG 0.474672 7_2:-73121206 None:intergenic
GAGGTTCGTTAGTGTGGTTA+GGG 0.474844 7_2:-73121021 None:intergenic
ATCGAAGGGTAGCATAGGAT+TGG 0.475974 7_2:-73120980 None:intergenic
AAGAGGGAAAGCAGAGAACT+TGG 0.476552 7_2:+73122814 Msa1075020:three_prime_UTR
ATCTTCTTCAATTCACCTCA+TGG 0.478558 7_2:-73122684 None:intergenic
AGTGAAGAACCGATCTGAAC+CGG 0.482402 7_2:-73121273 None:intergenic
GAGTGAGAAACTAGAGAATG+AGG 0.484691 7_2:-73121095 None:intergenic
GTGTTTAGGCGATTGAGAGA+AGG 0.495099 7_2:+73122291 Msa1075020:intron
CAGAACATCAGAAAAGGGTT+AGG 0.496050 7_2:+73122651 Msa1075020:CDS
CTTCCACGGCGAGTGGTGGT+TGG 0.501586 7_2:-73121362 None:intergenic
AAACTTCCTGCTGCTGAAGA+TGG 0.501739 7_2:+73122515 Msa1075020:CDS
GATTCACCATCTTCAGCAGC+AGG 0.505435 7_2:-73122521 None:intergenic
TATCCTGCAACGGCGTCCTC+GGG 0.507871 7_2:-73121430 None:intergenic
GAACCGGCGGTGAATGGAGC+GGG 0.509648 7_2:-73121257 None:intergenic
TTCAGCTGGTTAGCATGAAC+TGG 0.509893 7_2:-73122356 None:intergenic
TCTTCTTCCACGGCGAGTGG+TGG 0.510955 7_2:-73121366 None:intergenic
AACGGCGAAGAGAGAGAAAG+AGG 0.513945 7_2:-73121117 None:intergenic
AGTAGTGAGGTTCGTTAGTG+TGG 0.517658 7_2:-73121027 None:intergenic
GGAGATATCTTAGAGCAAAT+GGG 0.522905 7_2:+73122740 Msa1075020:three_prime_UTR
TCGAAGGGTAGCATAGGATT+GGG 0.526008 7_2:-73120979 None:intergenic
TGATTTAGGTTCGGGATCGA+AGG 0.528856 7_2:-73120995 None:intergenic
AAAAGCAGAACATCAGAAAA+GGG 0.528951 7_2:+73122646 Msa1075020:CDS
TTGAAGAAGATTTCAAGTGC+AGG 0.531126 7_2:+73122696 Msa1075020:three_prime_UTR
GTAGCAGCAGAGAATGAAGC+TGG 0.533970 7_2:-73122392 None:intergenic
GATCAGAGAAAATGTTCAGC+TGG 0.541232 7_2:-73122370 None:intergenic
CGAGCAACTTCGCGACGTAC+GGG 0.553693 7_2:-73121305 None:intergenic
CGAGGAGTGTACTTCCGTCT+TGG 0.554998 7_2:+73121405 Msa1075020:CDS
ACCACTCGCCGTGGAAGAAG+AGG 0.555978 7_2:+73121368 Msa1075020:CDS
GCCTCTTCTTCCACGGCGAG+TGG 0.556257 7_2:-73121369 None:intergenic
CTTCGCCGTTCATACTATGC+CGG 0.566266 7_2:+73121130 Msa1075020:exon
AATTCACCTCATGGACATCA+AGG 0.566381 7_2:-73122675 None:intergenic
TTAGGCGATTGAGAGAAGGA+GGG 0.570115 7_2:+73122295 Msa1075020:intron
CATTCACCGCCGGTTCAGAT+CGG 0.577297 7_2:+73121264 Msa1075020:CDS
GGTTCGTATTTGTAGTAGTG+AGG 0.582283 7_2:-73121040 None:intergenic
CATCAAAGAATGATGATGCA+AGG 0.582864 7_2:-73122900 None:intergenic
TATCTTAGAGCAAATGGGAA+AGG 0.583358 7_2:+73122745 Msa1075020:three_prime_UTR
TGGAGCGGGTGCAGGTGTAA+CGG 0.585593 7_2:-73121243 None:intergenic
GAGAATGAGGAAATTCTGAG+AGG 0.593794 7_2:-73121082 None:intergenic
TGCTTCCGGCATAGTATGAA+CGG 0.594718 7_2:-73121135 None:intergenic
AATAGAGTATCAACGTCAAG+AGG 0.595739 7_2:-73121176 None:intergenic
GAATGCAATAACTTCTTCTG+AGG 0.598545 7_2:-73122557 None:intergenic
CGGCTCAGATTCTTGAATCA+CGG 0.600207 7_2:-73121216 None:intergenic
GATTTAGGTTCGGGATCGAA+GGG 0.601661 7_2:-73120994 None:intergenic
ATGATTTATAGGGCTTCAAG+AGG 0.602824 7_2:+73122797 Msa1075020:three_prime_UTR
GAGGGAGAGACAGGGAACTG+AGG 0.604365 7_2:+73122313 Msa1075020:CDS
TCGGGATCGAAGGGTAGCAT+AGG 0.609040 7_2:-73120985 None:intergenic
AGAATGAGGAAATTCTGAGA+GGG 0.615317 7_2:-73121081 None:intergenic
ATACATTGTAATATATACAA+TGG 0.617639 7_2:-73122947 None:intergenic
CCTCCAACCACCACTCGCCG+TGG 0.618566 7_2:+73121359 Msa1075020:CDS
TGAACCGGCGGTGAATGGAG+CGG 0.620027 7_2:-73121258 None:intergenic
TACTTCCGTCTTGGTACCCG+AGG 0.623356 7_2:+73121414 Msa1075020:CDS
GGTGCAGGTGTAACGGAGAG+CGG 0.629682 7_2:-73121236 None:intergenic
GAGAGAAGGAGGGAGAGACA+GGG 0.634717 7_2:+73122305 Msa1075020:CDS
GCACCCGCTCCATTCACCGC+CGG 0.637803 7_2:+73121254 Msa1075020:CDS
CAACGTCAAGAGGGATGACG+CGG 0.656599 7_2:-73121166 None:intergenic
TGATTTATAGGGCTTCAAGA+GGG 0.662531 7_2:+73122798 Msa1075020:three_prime_UTR
ATAGAGTATCAACGTCAAGA+GGG 0.669159 7_2:-73121175 None:intergenic
TAGCACGGCCTCTTCTTCCA+CGG 0.680838 7_2:-73121376 None:intergenic
TCACGGCGGAGAAAGGTCGT+CGG 0.682516 7_2:-73121199 None:intergenic
ATAGCAGTGATATCCTGCAA+CGG 0.687557 7_2:-73121440 None:intergenic
CGTCAAGAGGGATGACGCGG+CGG 0.704648 7_2:-73121163 None:intergenic
GAAGAACCGATCTGAACCGG+CGG 0.705189 7_2:-73121270 None:intergenic
TTAGGACCTTGATGTCCATG+AGG 0.720116 7_2:+73122669 Msa1075020:CDS
CTCAGATTCTTGAATCACGG+CGG 0.734730 7_2:-73121213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCAAAAAATAACCAAAT+AGG + chr7_2:73120944-73120963 Msa1075020:five_prime_UTR 15.0%
!! TATAAAATAAACTAAAAAGC+AGG - chr7_2:73121592-73121611 None:intergenic 15.0%
!!! AGAGAAAATTTTCATTATAA+CGG + chr7_2:73121769-73121788 Msa1075020:intron 15.0%
!!! GAATTTGATTTAAATTGAAT+TGG + chr7_2:73122133-73122152 Msa1075020:intron 15.0%
!! AAAAAATTAAAGAGAATTGA+AGG + chr7_2:73122719-73122738 Msa1075020:three_prime_UTR 15.0%
!! ATACATTGTAATATATACAA+TGG - chr7_2:73122950-73122969 None:intergenic 15.0%
!!! TTTTCAAAAAATAACCAAAT+AGG + chr7_2:73120944-73120963 Msa1075020:five_prime_UTR 15.0%
!! TATAAAATAAACTAAAAAGC+AGG - chr7_2:73121592-73121611 None:intergenic 15.0%
!!! AGAGAAAATTTTCATTATAA+CGG + chr7_2:73121769-73121788 Msa1075020:intron 15.0%
!!! GAATTTGATTTAAATTGAAT+TGG + chr7_2:73122133-73122152 Msa1075020:intron 15.0%
!! AAAAAATTAAAGAGAATTGA+AGG + chr7_2:73122719-73122738 Msa1075020:three_prime_UTR 15.0%
!! ATACATTGTAATATATACAA+TGG - chr7_2:73122950-73122969 None:intergenic 15.0%
!! TCTCATCAAAATAGAAAAAA+CGG + chr7_2:73121498-73121517 Msa1075020:intron 20.0%
!!! TTGATTTGAATTGGAAAAAA+CGG + chr7_2:73121838-73121857 Msa1075020:intron 20.0%
!! TTTAAATTGAATTGGCATAA+CGG + chr7_2:73122141-73122160 Msa1075020:intron 20.0%
!! ATTCTGTTAATATTGTGTTT+AGG + chr7_2:73122277-73122296 Msa1075020:intron 20.0%
!! TTGATTAAGAGAAAAGAAAT+AGG - chr7_2:73122998-73123017 None:intergenic 20.0%
!! TTTCTCTTAATCAAATTGTT+TGG + chr7_2:73123004-73123023 Msa1075020:three_prime_UTR 20.0%
!! TCTCATCAAAATAGAAAAAA+CGG + chr7_2:73121498-73121517 Msa1075020:intron 20.0%
!!! TTGATTTGAATTGGAAAAAA+CGG + chr7_2:73121838-73121857 Msa1075020:intron 20.0%
!! TTTAAATTGAATTGGCATAA+CGG + chr7_2:73122141-73122160 Msa1075020:intron 20.0%
!! ATTCTGTTAATATTGTGTTT+AGG + chr7_2:73122277-73122296 Msa1075020:intron 20.0%
!! TTGATTAAGAGAAAAGAAAT+AGG - chr7_2:73122998-73123017 None:intergenic 20.0%
!! TTTCTCTTAATCAAATTGTT+TGG + chr7_2:73123004-73123023 Msa1075020:three_prime_UTR 20.0%
!! GGTTTTCAATTTTATCTAGA+AGG + chr7_2:73121519-73121538 Msa1075020:intron 25.0%
! CCGAATAAAGATAAATAAAC+CGG - chr7_2:73121650-73121669 None:intergenic 25.0%
! CCGGTTTATTTATCTTTATT+CGG + chr7_2:73121647-73121666 Msa1075020:intron 25.0%
! CATTTACTTTGCTAATATTC+TGG + chr7_2:73121735-73121754 Msa1075020:intron 25.0%
!!! GACTAGAATTTGATTTGAAT+TGG + chr7_2:73121829-73121848 Msa1075020:intron 25.0%
!! AGAGAAATTTTTCTTCAGAA+CGG + chr7_2:73122068-73122087 Msa1075020:intron 25.0%
! ATCATCTTCTGATGATTTAT+AGG + chr7_2:73122786-73122805 Msa1075020:three_prime_UTR 25.0%
! TCATCTTCTGATGATTTATA+GGG + chr7_2:73122787-73122806 Msa1075020:three_prime_UTR 25.0%
!! TGATGATTTTGTTGCAATTT+TGG + chr7_2:73122918-73122937 Msa1075020:three_prime_UTR 25.0%
!! TTTGAAAATTTAAAATGGCG+TGG - chr7_2:73120932-73120951 None:intergenic 25.0%
!! GGTTTTCAATTTTATCTAGA+AGG + chr7_2:73121519-73121538 Msa1075020:intron 25.0%
! CCGAATAAAGATAAATAAAC+CGG - chr7_2:73121650-73121669 None:intergenic 25.0%
! CCGGTTTATTTATCTTTATT+CGG + chr7_2:73121647-73121666 Msa1075020:intron 25.0%
! CATTTACTTTGCTAATATTC+TGG + chr7_2:73121735-73121754 Msa1075020:intron 25.0%
!!! GACTAGAATTTGATTTGAAT+TGG + chr7_2:73121829-73121848 Msa1075020:intron 25.0%
!! AGAGAAATTTTTCTTCAGAA+CGG + chr7_2:73122068-73122087 Msa1075020:intron 25.0%
! ATCATCTTCTGATGATTTAT+AGG + chr7_2:73122786-73122805 Msa1075020:three_prime_UTR 25.0%
! TCATCTTCTGATGATTTATA+GGG + chr7_2:73122787-73122806 Msa1075020:three_prime_UTR 25.0%
!! TGATGATTTTGTTGCAATTT+TGG + chr7_2:73122918-73122937 Msa1075020:three_prime_UTR 25.0%
!!! TTAGGGTTTTGATTTAGGTT+CGG - chr7_2:73121007-73121026 None:intergenic 30.0%
TATATGCGATGCTGAATATT+CGG + chr7_2:73121608-73121627 Msa1075020:intron 30.0%
! TTTGGAACTTTACTTCCATA+AGG - chr7_2:73122476-73122495 None:intergenic 30.0%
! GCAATGTCAATGATGATTTT+TGG - chr7_2:73122494-73122513 None:intergenic 30.0%
TTCACGCTCAATTATATCAA+TGG - chr7_2:73122582-73122601 None:intergenic 30.0%
!!! TTTCTGATGTTCTGCTTTTT+TGG - chr7_2:73122645-73122664 None:intergenic 30.0%
AAAAAGCAGAACATCAGAAA+AGG + chr7_2:73122645-73122664 Msa1075020:CDS 30.0%
AAAAGCAGAACATCAGAAAA+GGG + chr7_2:73122646-73122665 Msa1075020:CDS 30.0%
AAGTAGAAGATTACACAAAC+TGG - chr7_2:73122848-73122867 None:intergenic 30.0%
!!! TTAGGGTTTTGATTTAGGTT+CGG - chr7_2:73121007-73121026 None:intergenic 30.0%
TATATGCGATGCTGAATATT+CGG + chr7_2:73121608-73121627 Msa1075020:intron 30.0%
! TTTGGAACTTTACTTCCATA+AGG - chr7_2:73122476-73122495 None:intergenic 30.0%
! GCAATGTCAATGATGATTTT+TGG - chr7_2:73122494-73122513 None:intergenic 30.0%
TTCACGCTCAATTATATCAA+TGG - chr7_2:73122582-73122601 None:intergenic 30.0%
!!! TTTCTGATGTTCTGCTTTTT+TGG - chr7_2:73122645-73122664 None:intergenic 30.0%
AAAAAGCAGAACATCAGAAA+AGG + chr7_2:73122645-73122664 Msa1075020:CDS 30.0%
AAAAGCAGAACATCAGAAAA+GGG + chr7_2:73122646-73122665 Msa1075020:CDS 30.0%
AAGTAGAAGATTACACAAAC+TGG - chr7_2:73122848-73122867 None:intergenic 30.0%
!!! TAGGGTTTTGATTTAGGTTC+GGG - chr7_2:73121006-73121025 None:intergenic 35.0%
!!! TGTGGTTAGGGTTTTGATTT+AGG - chr7_2:73121012-73121031 None:intergenic 35.0%
GGGTTTGAATAGAATGAAGT+AGG - chr7_2:73121064-73121083 None:intergenic 35.0%
! AGAATGAGGAAATTCTGAGA+GGG - chr7_2:73121084-73121103 None:intergenic 35.0%
! ATAGAGTATCAACGTCAAGA+GGG - chr7_2:73121178-73121197 None:intergenic 35.0%
! AATAGAGTATCAACGTCAAG+AGG - chr7_2:73121179-73121198 None:intergenic 35.0%
CGGAATGCTTAATTGAAAAC+CGG + chr7_2:73121628-73121647 Msa1075020:intron 35.0%
!! AGGATTTTGGTGATTTCTTG+TGG - chr7_2:73122436-73122455 None:intergenic 35.0%
ATCAAGCTGAAAACACCTTA+TGG + chr7_2:73122458-73122477 Msa1075020:CDS 35.0%
GAATGCAATAACTTCTTCTG+AGG - chr7_2:73122560-73122579 None:intergenic 35.0%
ATCTTCTTCAATTCACCTCA+TGG - chr7_2:73122687-73122706 None:intergenic 35.0%
! TTGAAGAAGATTTCAAGTGC+AGG + chr7_2:73122696-73122715 Msa1075020:three_prime_UTR 35.0%
AGGAGATATCTTAGAGCAAA+TGG + chr7_2:73122739-73122758 Msa1075020:three_prime_UTR 35.0%
GGAGATATCTTAGAGCAAAT+GGG + chr7_2:73122740-73122759 Msa1075020:three_prime_UTR 35.0%
TATCTTAGAGCAAATGGGAA+AGG + chr7_2:73122745-73122764 Msa1075020:three_prime_UTR 35.0%
ATGATTTATAGGGCTTCAAG+AGG + chr7_2:73122797-73122816 Msa1075020:three_prime_UTR 35.0%
TGATTTATAGGGCTTCAAGA+GGG + chr7_2:73122798-73122817 Msa1075020:three_prime_UTR 35.0%
! CATCAAAGAATGATGATGCA+AGG - chr7_2:73122903-73122922 None:intergenic 35.0%
!!! TAGGGTTTTGATTTAGGTTC+GGG - chr7_2:73121006-73121025 None:intergenic 35.0%
!!! TGTGGTTAGGGTTTTGATTT+AGG - chr7_2:73121012-73121031 None:intergenic 35.0%
GGGTTTGAATAGAATGAAGT+AGG - chr7_2:73121064-73121083 None:intergenic 35.0%
! AGAATGAGGAAATTCTGAGA+GGG - chr7_2:73121084-73121103 None:intergenic 35.0%
! ATAGAGTATCAACGTCAAGA+GGG - chr7_2:73121178-73121197 None:intergenic 35.0%
! AATAGAGTATCAACGTCAAG+AGG - chr7_2:73121179-73121198 None:intergenic 35.0%
CGGAATGCTTAATTGAAAAC+CGG + chr7_2:73121628-73121647 Msa1075020:intron 35.0%
!! AGGATTTTGGTGATTTCTTG+TGG - chr7_2:73122436-73122455 None:intergenic 35.0%
ATCAAGCTGAAAACACCTTA+TGG + chr7_2:73122458-73122477 Msa1075020:CDS 35.0%
GAATGCAATAACTTCTTCTG+AGG - chr7_2:73122560-73122579 None:intergenic 35.0%
ATCTTCTTCAATTCACCTCA+TGG - chr7_2:73122687-73122706 None:intergenic 35.0%
! TTGAAGAAGATTTCAAGTGC+AGG + chr7_2:73122696-73122715 Msa1075020:three_prime_UTR 35.0%
AGGAGATATCTTAGAGCAAA+TGG + chr7_2:73122739-73122758 Msa1075020:three_prime_UTR 35.0%
GGAGATATCTTAGAGCAAAT+GGG + chr7_2:73122740-73122759 Msa1075020:three_prime_UTR 35.0%
TATCTTAGAGCAAATGGGAA+AGG + chr7_2:73122745-73122764 Msa1075020:three_prime_UTR 35.0%
ATGATTTATAGGGCTTCAAG+AGG + chr7_2:73122797-73122816 Msa1075020:three_prime_UTR 35.0%
TGATTTATAGGGCTTCAAGA+GGG + chr7_2:73122798-73122817 Msa1075020:three_prime_UTR 35.0%
! CATCAAAGAATGATGATGCA+AGG - chr7_2:73122903-73122922 None:intergenic 35.0%
GGAGATGAAGAAGACCTATT+TGG - chr7_2:73120961-73120980 None:intergenic 40.0%
GGTTCGTATTTGTAGTAGTG+AGG - chr7_2:73121043-73121062 None:intergenic 40.0%
GAGAATGAGGAAATTCTGAG+AGG - chr7_2:73121085-73121104 None:intergenic 40.0%
GAGTGAGAAACTAGAGAATG+AGG - chr7_2:73121098-73121117 None:intergenic 40.0%
ATAGCAGTGATATCCTGCAA+CGG - chr7_2:73121443-73121462 None:intergenic 40.0%
ACTGAGGAAATTGAGCAAAC+TGG + chr7_2:73122329-73122348 Msa1075020:CDS 40.0%
GATCAGAGAAAATGTTCAGC+TGG - chr7_2:73122373-73122392 None:intergenic 40.0%
! TTCAGCTTGATGCAGGATTT+TGG - chr7_2:73122449-73122468 None:intergenic 40.0%
!!! TGTTCTGCTTTTTTGGCTGT+AGG - chr7_2:73122638-73122657 None:intergenic 40.0%
CAGAACATCAGAAAAGGGTT+AGG + chr7_2:73122651-73122670 Msa1075020:CDS 40.0%
AATTCACCTCATGGACATCA+AGG - chr7_2:73122678-73122697 None:intergenic 40.0%
AGCAAATGGGAAAGGAGATT+TGG + chr7_2:73122753-73122772 Msa1075020:three_prime_UTR 40.0%
GCAAATGGGAAAGGAGATTT+GGG + chr7_2:73122754-73122773 Msa1075020:three_prime_UTR 40.0%
GGAGATGAAGAAGACCTATT+TGG - chr7_2:73120961-73120980 None:intergenic 40.0%
GGTTCGTATTTGTAGTAGTG+AGG - chr7_2:73121043-73121062 None:intergenic 40.0%
GAGAATGAGGAAATTCTGAG+AGG - chr7_2:73121085-73121104 None:intergenic 40.0%
GAGTGAGAAACTAGAGAATG+AGG - chr7_2:73121098-73121117 None:intergenic 40.0%
ATAGCAGTGATATCCTGCAA+CGG - chr7_2:73121443-73121462 None:intergenic 40.0%
ACTGAGGAAATTGAGCAAAC+TGG + chr7_2:73122329-73122348 Msa1075020:CDS 40.0%
GATCAGAGAAAATGTTCAGC+TGG - chr7_2:73122373-73122392 None:intergenic 40.0%
! TTCAGCTTGATGCAGGATTT+TGG - chr7_2:73122449-73122468 None:intergenic 40.0%
!!! TGTTCTGCTTTTTTGGCTGT+AGG - chr7_2:73122638-73122657 None:intergenic 40.0%
CAGAACATCAGAAAAGGGTT+AGG + chr7_2:73122651-73122670 Msa1075020:CDS 40.0%
AATTCACCTCATGGACATCA+AGG - chr7_2:73122678-73122697 None:intergenic 40.0%
AGCAAATGGGAAAGGAGATT+TGG + chr7_2:73122753-73122772 Msa1075020:three_prime_UTR 40.0%
GCAAATGGGAAAGGAGATTT+GGG + chr7_2:73122754-73122773 Msa1075020:three_prime_UTR 40.0%
TCGAAGGGTAGCATAGGATT+GGG - chr7_2:73120982-73121001 None:intergenic 45.0%
ATCGAAGGGTAGCATAGGAT+TGG - chr7_2:73120983-73121002 None:intergenic 45.0%
! GATTTAGGTTCGGGATCGAA+GGG - chr7_2:73120997-73121016 None:intergenic 45.0%
! TGATTTAGGTTCGGGATCGA+AGG - chr7_2:73120998-73121017 None:intergenic 45.0%
GAGGTTCGTTAGTGTGGTTA+GGG - chr7_2:73121024-73121043 None:intergenic 45.0%
TGAGGTTCGTTAGTGTGGTT+AGG - chr7_2:73121025-73121044 None:intergenic 45.0%
AGTAGTGAGGTTCGTTAGTG+TGG - chr7_2:73121030-73121049 None:intergenic 45.0%
TGCTTCCGGCATAGTATGAA+CGG - chr7_2:73121138-73121157 None:intergenic 45.0%
CTCAGATTCTTGAATCACGG+CGG - chr7_2:73121216-73121235 None:intergenic 45.0%
CGGCTCAGATTCTTGAATCA+CGG - chr7_2:73121219-73121238 None:intergenic 45.0%
AGTGAAGAACCGATCTGAAC+CGG - chr7_2:73121276-73121295 None:intergenic 45.0%
GTGTTTAGGCGATTGAGAGA+AGG + chr7_2:73122291-73122310 Msa1075020:intron 45.0%
TTTAGGCGATTGAGAGAAGG+AGG + chr7_2:73122294-73122313 Msa1075020:intron 45.0%
TTAGGCGATTGAGAGAAGGA+GGG + chr7_2:73122295-73122314 Msa1075020:intron 45.0%
TTCAGCTGGTTAGCATGAAC+TGG - chr7_2:73122359-73122378 None:intergenic 45.0%
! AGGTGTTTTCAGCTTGATGC+AGG - chr7_2:73122456-73122475 None:intergenic 45.0%
AAACTTCCTGCTGCTGAAGA+TGG + chr7_2:73122515-73122534 Msa1075020:CDS 45.0%
TTAGGACCTTGATGTCCATG+AGG + chr7_2:73122669-73122688 Msa1075020:CDS 45.0%
AAGAGGGAAAGCAGAGAACT+TGG + chr7_2:73122814-73122833 Msa1075020:three_prime_UTR 45.0%
TCGAAGGGTAGCATAGGATT+GGG - chr7_2:73120982-73121001 None:intergenic 45.0%
ATCGAAGGGTAGCATAGGAT+TGG - chr7_2:73120983-73121002 None:intergenic 45.0%
! GATTTAGGTTCGGGATCGAA+GGG - chr7_2:73120997-73121016 None:intergenic 45.0%
! TGATTTAGGTTCGGGATCGA+AGG - chr7_2:73120998-73121017 None:intergenic 45.0%
GAGGTTCGTTAGTGTGGTTA+GGG - chr7_2:73121024-73121043 None:intergenic 45.0%
TGAGGTTCGTTAGTGTGGTT+AGG - chr7_2:73121025-73121044 None:intergenic 45.0%
AGTAGTGAGGTTCGTTAGTG+TGG - chr7_2:73121030-73121049 None:intergenic 45.0%
TGCTTCCGGCATAGTATGAA+CGG - chr7_2:73121138-73121157 None:intergenic 45.0%
CTCAGATTCTTGAATCACGG+CGG - chr7_2:73121216-73121235 None:intergenic 45.0%
CGGCTCAGATTCTTGAATCA+CGG - chr7_2:73121219-73121238 None:intergenic 45.0%
AGTGAAGAACCGATCTGAAC+CGG - chr7_2:73121276-73121295 None:intergenic 45.0%
GTGTTTAGGCGATTGAGAGA+AGG + chr7_2:73122291-73122310 Msa1075020:intron 45.0%
TTTAGGCGATTGAGAGAAGG+AGG + chr7_2:73122294-73122313 Msa1075020:intron 45.0%
TTAGGCGATTGAGAGAAGGA+GGG + chr7_2:73122295-73122314 Msa1075020:intron 45.0%
TTCAGCTGGTTAGCATGAAC+TGG - chr7_2:73122359-73122378 None:intergenic 45.0%
! AGGTGTTTTCAGCTTGATGC+AGG - chr7_2:73122456-73122475 None:intergenic 45.0%
AAACTTCCTGCTGCTGAAGA+TGG + chr7_2:73122515-73122534 Msa1075020:CDS 45.0%
TTAGGACCTTGATGTCCATG+AGG + chr7_2:73122669-73122688 Msa1075020:CDS 45.0%
AAGAGGGAAAGCAGAGAACT+TGG + chr7_2:73122814-73122833 Msa1075020:three_prime_UTR 45.0%
!!! TATTTTTTGAAAATTTAAAA+TGG - chr7_2:73120937-73120956 None:intergenic 5.0%
!!! TATTTTTTGAAAATTTAAAA+TGG - chr7_2:73120937-73120956 None:intergenic 5.0%
AACGGCGAAGAGAGAGAAAG+AGG - chr7_2:73121120-73121139 None:intergenic 50.0%
CTTCGCCGTTCATACTATGC+CGG + chr7_2:73121130-73121149 Msa1075020:exon 50.0%
TCTTGAATCACGGCGGAGAA+AGG - chr7_2:73121209-73121228 None:intergenic 50.0%
!!! GGAGGAGTATTTTCCGAACC+TGG - chr7_2:73121344-73121363 None:intergenic 50.0%
GTAGCAGCAGAGAATGAAGC+TGG - chr7_2:73122395-73122414 None:intergenic 50.0%
GCTTCATTCTCTGCTGCTAC+TGG + chr7_2:73122395-73122414 Msa1075020:CDS 50.0%
GATTCACCATCTTCAGCAGC+AGG - chr7_2:73122524-73122543 None:intergenic 50.0%
AACGGCGAAGAGAGAGAAAG+AGG - chr7_2:73121120-73121139 None:intergenic 50.0%
CTTCGCCGTTCATACTATGC+CGG + chr7_2:73121130-73121149 Msa1075020:exon 50.0%
TCTTGAATCACGGCGGAGAA+AGG - chr7_2:73121209-73121228 None:intergenic 50.0%
!!! GGAGGAGTATTTTCCGAACC+TGG - chr7_2:73121344-73121363 None:intergenic 50.0%
GTAGCAGCAGAGAATGAAGC+TGG - chr7_2:73122395-73122414 None:intergenic 50.0%
GCTTCATTCTCTGCTGCTAC+TGG + chr7_2:73122395-73122414 Msa1075020:CDS 50.0%
GATTCACCATCTTCAGCAGC+AGG - chr7_2:73122524-73122543 None:intergenic 50.0%
TCGGGATCGAAGGGTAGCAT+AGG - chr7_2:73120988-73121007 None:intergenic 55.0%
CAACGTCAAGAGGGATGACG+CGG - chr7_2:73121169-73121188 None:intergenic 55.0%
!! CATTCACCGCCGGTTCAGAT+CGG + chr7_2:73121264-73121283 Msa1075020:CDS 55.0%
GAAGAACCGATCTGAACCGG+CGG - chr7_2:73121273-73121292 None:intergenic 55.0%
ACGAGCAACTTCGCGACGTA+CGG - chr7_2:73121309-73121328 None:intergenic 55.0%
TAGCACGGCCTCTTCTTCCA+CGG - chr7_2:73121379-73121398 None:intergenic 55.0%
! CGAGGAGTGTACTTCCGTCT+TGG + chr7_2:73121405-73121424 Msa1075020:CDS 55.0%
TACTTCCGTCTTGGTACCCG+AGG + chr7_2:73121414-73121433 Msa1075020:CDS 55.0%
ATATCCTGCAACGGCGTCCT+CGG - chr7_2:73121434-73121453 None:intergenic 55.0%
TGAGAGAAGGAGGGAGAGAC+AGG + chr7_2:73122304-73122323 Msa1075020:CDS 55.0%
GAGAGAAGGAGGGAGAGACA+GGG + chr7_2:73122305-73122324 Msa1075020:CDS 55.0%
TCGGGATCGAAGGGTAGCAT+AGG - chr7_2:73120988-73121007 None:intergenic 55.0%
CAACGTCAAGAGGGATGACG+CGG - chr7_2:73121169-73121188 None:intergenic 55.0%
!! CATTCACCGCCGGTTCAGAT+CGG + chr7_2:73121264-73121283 Msa1075020:CDS 55.0%
GAAGAACCGATCTGAACCGG+CGG - chr7_2:73121273-73121292 None:intergenic 55.0%
ACGAGCAACTTCGCGACGTA+CGG - chr7_2:73121309-73121328 None:intergenic 55.0%
TAGCACGGCCTCTTCTTCCA+CGG - chr7_2:73121379-73121398 None:intergenic 55.0%
! CGAGGAGTGTACTTCCGTCT+TGG + chr7_2:73121405-73121424 Msa1075020:CDS 55.0%
TACTTCCGTCTTGGTACCCG+AGG + chr7_2:73121414-73121433 Msa1075020:CDS 55.0%
ATATCCTGCAACGGCGTCCT+CGG - chr7_2:73121434-73121453 None:intergenic 55.0%
TGAGAGAAGGAGGGAGAGAC+AGG + chr7_2:73122304-73122323 Msa1075020:CDS 55.0%
GAGAGAAGGAGGGAGAGACA+GGG + chr7_2:73122305-73122324 Msa1075020:CDS 55.0%
TCACGGCGGAGAAAGGTCGT+CGG - chr7_2:73121202-73121221 None:intergenic 60.0%
! GGTGCAGGTGTAACGGAGAG+CGG - chr7_2:73121239-73121258 None:intergenic 60.0%
TGGAGCGGGTGCAGGTGTAA+CGG - chr7_2:73121246-73121265 None:intergenic 60.0%
TGAACCGGCGGTGAATGGAG+CGG - chr7_2:73121261-73121280 None:intergenic 60.0%
CGATCTGAACCGGCGGTGAA+TGG - chr7_2:73121266-73121285 None:intergenic 60.0%
CGAGCAACTTCGCGACGTAC+GGG - chr7_2:73121308-73121327 None:intergenic 60.0%
TGCGCGTCGTTCTCCAGGTT+CGG + chr7_2:73121328-73121347 Msa1075020:CDS 60.0%
TCTTCTTCCACGGCGAGTGG+TGG - chr7_2:73121369-73121388 None:intergenic 60.0%
ACCACTCGCCGTGGAAGAAG+AGG + chr7_2:73121368-73121387 Msa1075020:CDS 60.0%
CACTCCTCGACGCAGTAGCA+CGG - chr7_2:73121394-73121413 None:intergenic 60.0%
TATCCTGCAACGGCGTCCTC+GGG - chr7_2:73121433-73121452 None:intergenic 60.0%
GAGGGAGAGACAGGGAACTG+AGG + chr7_2:73122313-73122332 Msa1075020:CDS 60.0%
TCACGGCGGAGAAAGGTCGT+CGG - chr7_2:73121202-73121221 None:intergenic 60.0%
! GGTGCAGGTGTAACGGAGAG+CGG - chr7_2:73121239-73121258 None:intergenic 60.0%
TGGAGCGGGTGCAGGTGTAA+CGG - chr7_2:73121246-73121265 None:intergenic 60.0%
TGAACCGGCGGTGAATGGAG+CGG - chr7_2:73121261-73121280 None:intergenic 60.0%
CGATCTGAACCGGCGGTGAA+TGG - chr7_2:73121266-73121285 None:intergenic 60.0%
CGAGCAACTTCGCGACGTAC+GGG - chr7_2:73121308-73121327 None:intergenic 60.0%
TGCGCGTCGTTCTCCAGGTT+CGG + chr7_2:73121328-73121347 Msa1075020:CDS 60.0%
TCTTCTTCCACGGCGAGTGG+TGG - chr7_2:73121369-73121388 None:intergenic 60.0%
ACCACTCGCCGTGGAAGAAG+AGG + chr7_2:73121368-73121387 Msa1075020:CDS 60.0%
CACTCCTCGACGCAGTAGCA+CGG - chr7_2:73121394-73121413 None:intergenic 60.0%
TATCCTGCAACGGCGTCCTC+GGG - chr7_2:73121433-73121452 None:intergenic 60.0%
GAGGGAGAGACAGGGAACTG+AGG + chr7_2:73122313-73122332 Msa1075020:CDS 60.0%
CGTCAAGAGGGATGACGCGG+CGG - chr7_2:73121166-73121185 None:intergenic 65.0%
GAACCGGCGGTGAATGGAGC+GGG - chr7_2:73121260-73121279 None:intergenic 65.0%
CTTCCACGGCGAGTGGTGGT+TGG - chr7_2:73121365-73121384 None:intergenic 65.0%
GCCTCTTCTTCCACGGCGAG+TGG - chr7_2:73121372-73121391 None:intergenic 65.0%
GGCGTCCTCGGGTACCAAGA+CGG - chr7_2:73121422-73121441 None:intergenic 65.0%
CGTCAAGAGGGATGACGCGG+CGG - chr7_2:73121166-73121185 None:intergenic 65.0%
GAACCGGCGGTGAATGGAGC+GGG - chr7_2:73121260-73121279 None:intergenic 65.0%
CTTCCACGGCGAGTGGTGGT+TGG - chr7_2:73121365-73121384 None:intergenic 65.0%
GCCTCTTCTTCCACGGCGAG+TGG - chr7_2:73121372-73121391 None:intergenic 65.0%
GGCGTCCTCGGGTACCAAGA+CGG - chr7_2:73121422-73121441 None:intergenic 65.0%
ACGCGGCGGTCTCGTGCTTC+CGG - chr7_2:73121152-73121171 None:intergenic 70.0%
GCGGTGAATGGAGCGGGTGC+AGG - chr7_2:73121254-73121273 None:intergenic 70.0%
GCACCCGCTCCATTCACCGC+CGG + chr7_2:73121254-73121273 Msa1075020:CDS 70.0%
GCTCGTGCGCGTCGTTCTCC+AGG + chr7_2:73121323-73121342 Msa1075020:CDS 70.0%
CCACGGCGAGTGGTGGTTGG+AGG - chr7_2:73121362-73121381 None:intergenic 70.0%
CCTCCAACCACCACTCGCCG+TGG + chr7_2:73121359-73121378 Msa1075020:CDS 70.0%
! GAGGCCGTGCTACTGCGTCG+AGG + chr7_2:73121387-73121406 Msa1075020:CDS 70.0%
GTACCCGAGGACGCCGTTGC+AGG + chr7_2:73121427-73121446 Msa1075020:CDS 70.0%
ACGCGGCGGTCTCGTGCTTC+CGG - chr7_2:73121152-73121171 None:intergenic 70.0%
GCGGTGAATGGAGCGGGTGC+AGG - chr7_2:73121254-73121273 None:intergenic 70.0%
GCACCCGCTCCATTCACCGC+CGG + chr7_2:73121254-73121273 Msa1075020:CDS 70.0%
GCTCGTGCGCGTCGTTCTCC+AGG + chr7_2:73121323-73121342 Msa1075020:CDS 70.0%
CCACGGCGAGTGGTGGTTGG+AGG - chr7_2:73121362-73121381 None:intergenic 70.0%
CCTCCAACCACCACTCGCCG+TGG + chr7_2:73121359-73121378 Msa1075020:CDS 70.0%
! GAGGCCGTGCTACTGCGTCG+AGG + chr7_2:73121387-73121406 Msa1075020:CDS 70.0%
GTACCCGAGGACGCCGTTGC+AGG + chr7_2:73121427-73121446 Msa1075020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 73120932 73123035 73120932 ID=Msa1075020;Name=Msa1075020
chr7_2 mRNA 73120932 73123035 73120932 ID=Msa1075020-mRNA-1;Parent=Msa1075020;Name=Msa1075020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=214|1|1|1|1|1|2|341|239
chr7_2 exon 73120932 73121469 73120932 ID=Msa1075020-mRNA-1:exon:16936;Parent=Msa1075020-mRNA-1
chr7_2 exon 73122299 73123035 73122299 ID=Msa1075020-mRNA-1:exon:16937;Parent=Msa1075020-mRNA-1
chr7_2 five_prime_UTR 73120932 73121145 73120932 ID=Msa1075020-mRNA-1:five_prime_utr;Parent=Msa1075020-mRNA-1
chr7_2 CDS 73121146 73121469 73121146 ID=Msa1075020-mRNA-1:cds;Parent=Msa1075020-mRNA-1
chr7_2 CDS 73122299 73122694 73122299 ID=Msa1075020-mRNA-1:cds;Parent=Msa1075020-mRNA-1
chr7_2 three_prime_UTR 73122695 73123035 73122695 ID=Msa1075020-mRNA-1:three_prime_utr;Parent=Msa1075020-mRNA-1
Gene Sequence

>Msa1075020

ATGCCGGAAGCACGAGACCGCCGCGTCATCCCTCTTGACGTTGATACTCTATTCCGACGACCTTTCTCCGCCGTGATTCAAGAATCTGAGCCGCTCTCCGTTACACCTGCACCCGCTCCATTCACCGCCGGTTCAGATCGGTTCTTCACTGAAAGAACTCCCGTACGTCGCGAAGTTGCTCGTGCGCGTCGTTCTCCAGGTTCGGAAAATACTCCTCCAACCACCACTCGCCGTGGAAGAAGAGGCCGTGCTACTGCGTCGAGGAGTGTACTTCCGTCTTGGTACCCGAGGACGCCGTTGCAGGATATCACTGCTATTGTTCGAGCGATTGAGAGAAGGAGGGAGAGACAGGGAACTGAGGAAATTGAGCAAACTGGAACACCAGTTCATGCTAACCAGCTGAACATTTTCTCTGATCCAGCTTCATTCTCTGCTGCTACTGGATCTTCTTCACGTATCCACAAGAAATCACCAAAATCCTGCATCAAGCTGAAAACACCTTATGGAAGTAAAGTTCCAAAAATCATCATTGACATTGCAAAACTTCCTGCTGCTGAAGATGGTGAATCAGAGCTTCTGACTCCTCAGAAGAAGTTATTGCATTCCATTGATATAATTGAGCGTGAAGTGAAGCAAGAGTTGATGAAACTCAAGAGAACTCCTACAGCCAAAAAAGCAGAACATCAGAAAAGGGTTAGGACCTTGATGTCCATGAGGTGA

Protein sequence

>Msa1075020

MPEARDRRVIPLDVDTLFRRPFSAVIQESEPLSVTPAPAPFTAGSDRFFTERTPVRREVARARRSPGSENTPPTTTRRGRRGRATASRSVLPSWYPRTPLQDITAIVRAIERRRERQGTEEIEQTGTPVHANQLNIFSDPASFSAATGSSSRIHKKSPKSCIKLKTPYGSKVPKIIIDIAKLPAAEDGESELLTPQKKLLHSIDIIEREVKQELMKLKRTPTAKKAEHQKRVRTLMSMR*