AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129440 MtrunA17_Chr7g0273781 88.850 287 14 2 1 269 34 320 0.0 523
Msa1129440 MtrunA17_Chr7g0273791 85.714 287 23 2 1 269 1 287 0.0 507
Msa1129440 MtrunA17_Chr7g0273731 77.003 287 48 2 1 269 84 370 1.92e-161 458
Msa1129440 MtrunA17_Chr5g0433641 77.778 288 45 3 1 269 1 288 7.56e-160 452
Msa1129440 MtrunA17_Chr7g0273761 75.517 290 50 5 1 269 372 661 4.04e-152 445
Msa1129440 MtrunA17_Chr7g0273761 73.944 142 36 1 129 269 32 173 4.40e-70 231
Msa1129440 MtrunA17_Chr7g0273721 73.010 289 58 4 1 269 1 289 9.72e-151 429
Msa1129440 MtrunA17_Chr1g0165671 56.014 291 101 5 1 269 18 303 1.46e-110 327
Msa1129440 MtrunA17_Chr1g0165711 55.594 286 106 4 3 269 2 285 2.33e-108 319
Msa1129440 MtrunA17_Chr1g0165661 53.659 287 111 5 3 269 2 286 2.41e-104 310
Msa1129440 MtrunA17_Chr1g0165681 53.310 287 112 5 3 269 2 286 1.38e-102 306
Msa1129440 MtrunA17_Chr1g0191081 53.310 287 113 5 3 269 11 296 7.14e-96 289
Msa1129440 MtrunA17_Chr7g0273741 82.576 132 21 1 1 130 1 132 1.59e-74 224
Msa1129440 MtrunA17_Chr3g0098961 74.242 132 32 1 1 130 4 135 1.81e-65 202
Msa1129440 MtrunA17_Chr6g0471371 64.615 130 44 1 3 130 2 131 5.54e-57 180
Msa1129440 MtrunA17_Chr1g0165741 64.615 130 44 1 3 130 2 131 4.51e-55 174
Msa1129440 MtrunA17_Chr8g0353421 62.992 127 45 1 3 127 2 128 1.94e-54 172
Msa1129440 MtrunA17_Chr7g0273691 76.289 97 22 1 148 243 1 97 2.10e-48 155
Msa1129440 MtrunA17_Chr7g0224391 33.214 280 157 7 14 269 20 293 5.23e-44 154
Msa1129440 MtrunA17_Chr3g0132001 32.500 280 166 6 10 269 14 290 3.46e-43 152
Msa1129440 MtrunA17_Chr8g0386141 30.877 285 169 7 8 269 5 284 4.13e-43 152
Msa1129440 MtrunA17_Chr7g0270771 29.210 291 154 8 6 269 1 266 8.18e-40 139
Msa1129440 MtrunA17_Chr3g0141851 31.752 274 157 8 13 261 14 282 5.37e-35 130
Msa1129440 MtrunA17_Chr4g0027071 31.183 279 154 9 17 263 19 291 7.04e-35 130
Msa1129440 MtrunA17_Chr6g0471971 49.231 130 54 4 145 269 2 124 3.62e-32 118
Msa1129440 MtrunA17_Chr1g0165731 45.946 111 56 3 145 253 2 110 5.21e-29 106
Msa1129440 MtrunA17_Chr2g0334001 29.520 271 170 7 17 268 10 278 1.60e-28 112
Msa1129440 MtrunA17_Chr2g0306321 31.802 283 160 11 18 268 26 307 4.57e-28 111
Msa1129440 MtrunA17_Chr4g0001861 29.435 248 154 5 41 268 33 279 2.86e-27 109
Msa1129440 MtrunA17_Chr3g0106691 29.856 278 167 7 17 268 63 338 8.18e-27 108
Msa1129440 MtrunA17_Chr8g0371821 30.328 244 147 8 45 268 37 277 1.37e-25 104
Msa1129440 MtrunA17_Chr3g0106711 33.511 188 101 4 17 180 17 204 6.67e-25 99.4
Msa1129440 MtrunA17_Chr6g0470591 30.702 228 128 9 62 263 70 293 7.59e-23 97.1
Msa1129440 MtrunA17_Chr4g0004691 32.121 165 90 4 20 167 14 173 3.18e-22 90.9
Msa1129440 MtrunA17_Chr7g0273671 95.349 43 2 0 1 43 1 43 3.78e-22 86.7
Msa1129440 MtrunA17_Chr7g0273681 95.122 41 2 0 90 130 1 41 5.00e-21 84.0
Msa1129440 MtrunA17_Chr3g0106721 28.777 278 163 10 17 263 17 290 1.58e-20 90.5
Msa1129440 MtrunA17_Chr3g0106661 28.522 291 149 11 17 263 17 292 1.70e-20 90.5
Msa1129440 MtrunA17_Chr2g0283361 29.258 229 135 8 62 267 57 281 2.06e-20 90.1
Msa1129440 MtrunA17_Chr6g0471381 48.936 94 40 3 180 269 6 95 2.02e-19 85.1
Msa1129440 MtrunA17_Chr5g0442721 29.384 211 125 6 42 232 49 255 4.93e-19 86.3
Msa1129440 MtrunA17_Chr7g0235531 25.333 300 181 10 7 269 1 294 2.00e-18 84.3
Msa1129440 MtrunA17_Chr7g0253501 26.460 291 164 13 16 265 8 289 2.58e-18 84.0
Msa1129440 MtrunA17_Chr3g0087401 26.148 283 167 10 18 265 10 285 3.44e-18 83.6
Msa1129440 MtrunA17_Chr3g0106761 29.018 224 128 9 68 266 19 236 3.56e-17 80.5
Msa1129440 MtrunA17_Chr7g0252731 27.650 217 129 7 63 254 70 283 4.92e-17 80.1
Msa1129440 MtrunA17_Chr5g0442691 27.711 249 152 7 8 232 31 275 4.98e-17 80.5
Msa1129440 MtrunA17_Chr7g0253541 25.087 287 172 11 7 257 1 280 6.41e-17 80.1
Msa1129440 MtrunA17_Chr5g0442701 32.178 202 114 6 8 190 8 205 9.85e-17 79.3
Msa1129440 MtrunA17_Chr7g0253531 25.436 287 156 11 16 257 8 281 2.41e-16 78.2
Msa1129440 MtrunA17_Chr3g0106741 30.952 210 124 7 77 266 59 267 2.80e-16 78.2
Msa1129440 MtrunA17_Chr3g0095721 31.183 186 109 4 63 232 72 254 5.56e-16 77.4
Msa1129440 MtrunA17_Chr4g0072041 24.046 262 166 9 36 268 39 296 1.41e-15 76.3
Msa1129440 MtrunA17_Chr3g0095731 29.048 210 121 7 42 232 50 250 1.71e-14 72.8
Msa1129440 MtrunA17_Chr5g0438701 28.313 166 95 6 16 162 9 169 2.68e-14 72.4
Msa1129440 MtrunA17_Chr4g0054081 31.016 187 101 7 2 167 5 184 2.85e-14 72.4
Msa1129440 MtrunA17_Chr3g0123061 26.250 240 136 13 10 230 5 222 2.86e-14 72.0
Msa1129440 MtrunA17_Chr8g0354371 24.028 283 174 10 13 269 20 287 5.91e-14 71.2
Msa1129440 MtrunA17_Chr5g0438681 30.178 169 88 7 16 162 9 169 2.90e-12 66.2
Msa1129440 MtrunA17_Chr5g0408911 27.888 251 147 13 23 251 33 271 3.98e-12 65.9
Msa1129440 MtrunA17_Chr3g0134091 26.119 268 158 11 24 261 30 287 8.17e-12 65.1
Msa1129440 MtrunA17_Chr3g0106631 28.571 140 95 3 130 265 2 140 2.10e-11 60.8
Msa1129440 MtrunA17_Chr1g0169471 33.663 101 55 4 79 167 2 102 2.78e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129440 AT5G17540.1 49.306 288 124 5 3 269 2 288 3.38e-85 262
Msa1129440 AT3G03480.1 49.306 288 121 7 2 268 11 294 4.66e-79 246
Msa1129440 AT5G41040.2 31.507 292 174 6 1 269 8 296 3.61e-43 152
Msa1129440 AT5G41040.1 31.507 292 174 6 1 269 24 312 4.21e-43 152
Msa1129440 AT3G48720.1 31.034 290 175 8 1 269 1 286 2.21e-42 150
Msa1129440 AT5G63560.1 31.597 288 169 7 3 269 2 282 1.67e-39 142
Msa1129440 AT1G27620.1 32.616 279 159 7 14 269 13 285 6.21e-36 133
Msa1129440 AT5G48930.1 30.545 275 163 8 17 268 10 279 5.45e-29 114
Msa1129440 AT3G62160.1 29.537 281 173 8 6 269 1 273 9.94e-29 113
Msa1129440 AT2G25150.1 29.856 278 157 10 16 263 19 288 3.85e-28 112
Msa1129440 AT5G57840.1 31.636 275 153 10 10 257 3 269 2.34e-27 110
Msa1129440 AT2G23510.1 26.897 290 174 8 3 263 6 286 2.26e-24 101
Msa1129440 AT1G03390.1 30.796 289 155 12 17 268 24 304 7.88e-23 97.4
Msa1129440 AT3G47170.1 25.243 309 176 10 2 263 4 304 1.13e-22 97.1
Msa1129440 AT5G07080.1 27.645 293 172 9 3 263 7 291 2.48e-22 95.9
Msa1129440 AT1G31490.1 30.488 246 132 11 31 251 29 260 1.14e-21 94.0
Msa1129440 AT1G28680.2 27.444 266 160 9 31 269 27 286 1.05e-20 90.9
Msa1129440 AT2G40230.1 27.083 288 164 13 17 269 12 288 1.22e-20 90.9
Msa1129440 AT1G28680.1 27.444 266 160 9 31 269 27 286 1.53e-20 90.9
Msa1129440 AT1G65450.1 27.068 266 160 10 30 268 39 297 8.00e-20 89.0
Msa1129440 AT2G19070.1 30.688 189 106 6 36 203 29 213 5.12e-19 86.7
Msa1129440 AT3G26040.1 24.265 272 152 9 16 257 9 256 4.01e-17 80.9
Msa1129440 AT1G32910.1 32.450 151 91 2 46 187 48 196 2.11e-16 79.0
Msa1129440 AT1G78990.1 29.508 183 113 4 63 232 67 246 5.61e-16 77.8
Msa1129440 AT5G16410.1 26.047 215 138 7 63 262 91 299 4.71e-15 75.1
Msa1129440 AT4G31910.1 25.926 243 140 8 63 266 64 305 4.41e-14 72.0
Msa1129440 AT4G15390.1 25.725 276 160 11 5 253 3 260 4.65e-14 72.0
Msa1129440 AT4G15390.2 25.725 276 160 11 5 253 3 260 4.65e-14 72.0
Msa1129440 AT1G24420.2 29.889 271 150 10 16 262 11 265 1.51e-13 70.5
Msa1129440 AT1G24420.1 29.889 271 150 10 16 262 11 265 1.51e-13 70.5
Msa1129440 AT5G42830.1 26.990 289 162 12 14 266 16 291 1.70e-12 67.4
Msa1129440 AT5G47950.1 27.011 174 106 3 10 167 6 174 3.46e-12 66.2

Find 137 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTCCTTAATGGTATT+TGG 0.143670 7_3:-81422755 None:intergenic
ATCCATTTGCGGGAAGAATT+AGG 0.192366 7_3:+81420112 Msa1129440:CDS
TTGATCAATTAAATATAAAA+AGG 0.227832 7_3:-81423823 None:intergenic
CACTCGGTGTAAGATGATTT+TGG 0.236072 7_3:-81423423 None:intergenic
CTATGATTCTTGTTATAATT+AGG 0.239477 7_3:-81423854 None:intergenic
GCTAAATAAAACAAAGAATA+GGG 0.248191 7_3:-81423612 None:intergenic
AGCAGTATCTTCTTCCTTAA+TGG 0.250041 7_3:-81422762 None:intergenic
GCATTCTGTGGCCGATCTTA+TGG 0.264577 7_3:+81423135 Msa1129440:three_prime_UTR
AGCCCCTAACTTTATTTAAC+AGG 0.267572 7_3:-81423492 None:intergenic
GGCCGATCTTATGGTTATTA+AGG 0.274324 7_3:+81423144 Msa1129440:three_prime_UTR
GTCCCACATAAGAATATAAA+TGG 0.280574 7_3:+81423316 Msa1129440:three_prime_UTR
GCTGCAGTGGTGACGCCAGC+TGG 0.286610 7_3:-81423034 None:intergenic
GATTCCTGTTAAATAAAGTT+AGG 0.306400 7_3:+81423488 Msa1129440:three_prime_UTR
CCATTCAACCTGTGTGGAAT+AGG 0.307886 7_3:+81422663 Msa1129440:CDS
TCCATTTGCGGGAAGAATTA+GGG 0.325568 7_3:+81420113 Msa1129440:CDS
CATTGTATGGTTCCAATTCA+TGG 0.325987 7_3:-81422570 None:intergenic
TCGCCACTTGTTGGATATTA+CGG 0.326351 7_3:+81422995 Msa1129440:three_prime_UTR
TCTTCAGAGGGCAAACAAAT+TGG 0.336728 7_3:-81423358 None:intergenic
CATAGCTGCTCTTCGTCTCT+TGG 0.341686 7_3:+81422823 Msa1129440:CDS
GGGTCTTTCTCTACCATTGA+TGG 0.356699 7_3:-81420042 None:intergenic
GTGAATTTCGGATGGGGTAA+AGG 0.370225 7_3:+81423235 Msa1129440:three_prime_UTR
TGAATTTCGGATGGGGTAAA+GGG 0.380086 7_3:+81423236 Msa1129440:three_prime_UTR
CATGACTGCATGGGCAGAAA+TGG 0.383185 7_3:+81422619 Msa1129440:CDS
ATTCTTATGTGGGACGATAT+AGG 0.390250 7_3:-81423308 None:intergenic
GGGAGGATTTGTTATATAGA+TGG 0.392741 7_3:-81423802 None:intergenic
AACTCCACTGCATAACCAAA+TGG 0.398172 7_3:-81423073 None:intergenic
TCACGACGGTACAAACTATA+AGG 0.401473 7_3:-81423467 None:intergenic
GGGTGATGGGCGCAAGTTGA+TGG 0.402242 7_3:+81420137 Msa1129440:CDS
TGATATATTGACTAGTATCT+AGG 0.405033 7_3:+81423564 Msa1129440:three_prime_UTR
TGGGGTAAAGGGGTGTATGG+TGG 0.406331 7_3:+81423247 Msa1129440:three_prime_UTR
GCAGCTGGTGGCACCAACTC+TGG 0.409555 7_3:-81419925 None:intergenic
GTTTATTACTATCCATTTGC+GGG 0.409976 7_3:+81420102 Msa1129440:CDS
AAGCTTTGTGGAAACCCATT+TGG 0.411357 7_3:+81423058 Msa1129440:three_prime_UTR
GGTTCATAGTGGCCATGAAT+TGG 0.412673 7_3:+81422558 Msa1129440:CDS
TCCCTAATTCTTCCCGCAAA+TGG 0.413944 7_3:-81420114 None:intergenic
AGGCTCTCAGAAGTGAATTT+CGG 0.414115 7_3:+81423223 Msa1129440:three_prime_UTR
CACAAAAGCATTGCAGTTAG+AGG 0.414539 7_3:+81422910 Msa1129440:CDS
ACCACTGCAGCGAAGCTTTG+TGG 0.415000 7_3:+81423046 Msa1129440:three_prime_UTR
TCTCCATTTATATTCTTATG+TGG 0.422113 7_3:-81423319 None:intergenic
ATTCCTGTTAAATAAAGTTA+GGG 0.423482 7_3:+81423489 Msa1129440:three_prime_UTR
GGCTAAATAAAACAAAGAAT+AGG 0.426921 7_3:-81423613 None:intergenic
AATATATCACAATAATAAAC+AGG 0.430409 7_3:-81423550 None:intergenic
GGTGTTTATTTACAACTGTA+AGG 0.432833 7_3:+81423170 Msa1129440:three_prime_UTR
CATTCAACCTGTGTGGAATA+GGG 0.435556 7_3:+81422664 Msa1129440:CDS
GTTAACAATTCGCCACTTGT+TGG 0.440896 7_3:+81422986 Msa1129440:three_prime_UTR
CCTATTCCACACAGGTTGAA+TGG 0.443311 7_3:-81422663 None:intergenic
GAACATCGTATAGGAGTTGA+TGG 0.450535 7_3:-81420257 None:intergenic
GGAGTTGCAAAAGGTGGGGC+TGG 0.459644 7_3:+81423268 Msa1129440:three_prime_UTR
AAAATTGTTCGTATTCAAGA+TGG 0.465942 7_3:-81422727 None:intergenic
CTCCATTTATATTCTTATGT+GGG 0.466477 7_3:-81423318 None:intergenic
CAGCTGCATCACCCATTGTA+TGG 0.471746 7_3:-81422583 None:intergenic
GGATGGGGTAAAGGGGTGTA+TGG 0.476221 7_3:+81423244 Msa1129440:three_prime_UTR
GAAGAGGTTTGCAAAAGAGT+TGG 0.476327 7_3:+81423384 Msa1129440:three_prime_UTR
ATCTGTTAGAGAGGAGAGAA+GGG 0.480887 7_3:+81423758 Msa1129440:three_prime_UTR
GTGCATTGACGAAGGTGAAA+TGG 0.485395 7_3:-81422848 None:intergenic
TCACAAGGAGTGGGTGCAGC+TGG 0.491045 7_3:-81419940 None:intergenic
CTTTCTCTACCATTGATGGT+TGG 0.494685 7_3:-81420038 None:intergenic
TGTTTATTACTATCCATTTG+CGG 0.499605 7_3:+81420101 Msa1129440:CDS
GTGGAATAGGGAGATTCTAA+TGG 0.500842 7_3:+81422676 Msa1129440:CDS
CTATCGTCACCAACCATCAA+TGG 0.501354 7_3:+81420029 Msa1129440:CDS
CTGAGCCTGGAACATCGTAT+AGG 0.505911 7_3:-81420266 None:intergenic
CAAGAAGGTATGCGTTTCAA+TGG 0.506787 7_3:+81419991 Msa1129440:CDS
TCTCAGATTTGACTCGTGCT+AGG 0.509741 7_3:+81423203 Msa1129440:three_prime_UTR
GTGTATGGTGGAGTTGCAAA+AGG 0.512005 7_3:+81423259 Msa1129440:three_prime_UTR
AATCTGTTAGAGAGGAGAGA+AGG 0.512649 7_3:+81423757 Msa1129440:three_prime_UTR
ACTCCACTGCATAACCAAAT+GGG 0.518855 7_3:-81423072 None:intergenic
TATGGTGGAGTTGCAAAAGG+TGG 0.519898 7_3:+81423262 Msa1129440:three_prime_UTR
ATTTGGTTATGCAGTGGAGT+TGG 0.521840 7_3:+81423075 Msa1129440:three_prime_UTR
CTGGTGGCACCAACTCTGGT+TGG 0.521971 7_3:-81419921 None:intergenic
GATGTAACACTTGATCAGTT+TGG 0.522332 7_3:+81420204 Msa1129440:CDS
TCCACAAAGCTTCGCTGCAG+TGG 0.527787 7_3:-81423047 None:intergenic
TAGTTTAACTTCACAAGGAG+TGG 0.532006 7_3:-81419950 None:intergenic
GGAAGAATTAGGGAGGGTGA+TGG 0.533251 7_3:+81420123 Msa1129440:CDS
AAGGTAGACATCACAAAACT+AGG 0.537832 7_3:-81423448 None:intergenic
GAAGAATTAGGGAGGGTGAT+GGG 0.538143 7_3:+81420124 Msa1129440:CDS
AATGAACATGACACCTTCAC+CGG 0.539549 7_3:-81420169 None:intergenic
CATACAATGGGTGATGCAGC+TGG 0.540298 7_3:+81422584 Msa1129440:CDS
CTCTAAAGAAGAAAGATCGA+TGG 0.544782 7_3:-81422793 None:intergenic
AACAGATGCAAAGCAGCCTA+AGG 0.546355 7_3:-81423634 None:intergenic
TTCCTTAATAACCATAAGAT+CGG 0.546586 7_3:-81423146 None:intergenic
ATCTTATGGTTATTAAGGAA+CGG 0.549803 7_3:+81423149 Msa1129440:three_prime_UTR
ATGAATTGGAACCATACAAT+GGG 0.552002 7_3:+81422572 Msa1129440:CDS
GCGGAGGTGCCAACCAGAGT+TGG 0.552570 7_3:+81419912 Msa1129440:CDS
CTGCAGTGGTGACGCCAGCT+GGG 0.554568 7_3:-81423033 None:intergenic
TGCTATGTAATGATAATGAA+AGG 0.554856 7_3:+81423527 Msa1129440:three_prime_UTR
ATGGTGGAGTTGCAAAAGGT+GGG 0.555845 7_3:+81423263 Msa1129440:three_prime_UTR
AGTTTAACTTCACAAGGAGT+GGG 0.556068 7_3:-81419949 None:intergenic
GGGACGATATAGGTTGATCC+AGG 0.558026 7_3:-81423298 None:intergenic
GAATTTCGGATGGGGTAAAG+GGG 0.562673 7_3:+81423237 Msa1129440:three_prime_UTR
GCAGTTAGAGGCAGATGAAG+AGG 0.562947 7_3:+81422922 Msa1129440:CDS
TGCCCTCTGAAGATATGAAG+AGG 0.566120 7_3:+81423368 Msa1129440:three_prime_UTR
TGAGACAATTCATGACTGCA+TGG 0.568023 7_3:+81422609 Msa1129440:CDS
CTCAGAAGTGAATTTCGGAT+GGG 0.571165 7_3:+81423228 Msa1129440:three_prime_UTR
CAAGGAGTGGGTGCAGCTGG+TGG 0.572177 7_3:-81419937 None:intergenic
GAGACAATTCATGACTGCAT+GGG 0.576060 7_3:+81422610 Msa1129440:CDS
TCTCAGAAGTGAATTTCGGA+TGG 0.578397 7_3:+81423227 Msa1129440:three_prime_UTR
GTCACACGTCTCAAGTGTGG+TGG 0.581788 7_3:+81422536 Msa1129440:CDS
ATAGGAGTTGATGGAAGCAA+TGG 0.584604 7_3:-81420248 None:intergenic
TATATTCAAATCTGTTAGAG+AGG 0.584851 7_3:+81423749 Msa1129440:three_prime_UTR
AAACCTCTTCATATCTTCAG+AGG 0.585787 7_3:-81423371 None:intergenic
AGTTGATGGAAGCAATGGAA+TGG 0.589862 7_3:-81420243 None:intergenic
TGATGGAAGCAATGGAATGG+AGG 0.590351 7_3:-81420240 None:intergenic
TTCCACACAGGTTGAATGGA+AGG 0.590931 7_3:-81422659 None:intergenic
ATGGTGGATTGTACCGGTGA+AGG 0.594235 7_3:+81420156 Msa1129440:CDS
TTGTTATATAGATGGCTCAA+AGG 0.596690 7_3:-81423794 None:intergenic
CTAAATAAAACAAAGAATAG+GGG 0.602522 7_3:-81423611 None:intergenic
ATCACAAAACTAGGAGCACT+CGG 0.604510 7_3:-81423439 None:intergenic
AACCTCTTCATATCTTCAGA+GGG 0.608993 7_3:-81423370 None:intergenic
AAACCCATTTGGTTATGCAG+TGG 0.611003 7_3:+81423069 Msa1129440:three_prime_UTR
TGATGGGCGCAAGTTGATGG+TGG 0.614524 7_3:+81420140 Msa1129440:CDS
TGACGATAGATAAATATGAC+AGG 0.615201 7_3:-81420015 None:intergenic
CAAGTGTGGTGGGTTCATAG+TGG 0.622481 7_3:+81422547 Msa1129440:CDS
TTCCTGTTAAATAAAGTTAG+GGG 0.622693 7_3:+81423490 Msa1129440:three_prime_UTR
GATAATAGTTTAACTTCACA+AGG 0.623062 7_3:-81419955 None:intergenic
TCACACGTCTCAAGTGTGGT+GGG 0.628748 7_3:+81422537 Msa1129440:CDS
GGTTGCATGTAATGCGTGGA+GGG 0.631354 7_3:-81422706 None:intergenic
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 7_3:+81423105 Msa1129440:three_prime_UTR
TTACCGTAATATCCAACAAG+TGG 0.636110 7_3:-81422998 None:intergenic
AAGTTGATGGTGGATTGTAC+CGG 0.636458 7_3:+81420150 Msa1129440:CDS
TCAGAAGTGAATTTCGGATG+GGG 0.636971 7_3:+81423229 Msa1129440:three_prime_UTR
CATGAATTGGAACCATACAA+TGG 0.637861 7_3:+81422571 Msa1129440:CDS
GTCCTTCCATTCAACCTGTG+TGG 0.637995 7_3:+81422657 Msa1129440:CDS
AAAGAGTTGGATGAGATGCT+TGG 0.638972 7_3:+81423397 Msa1129440:three_prime_UTR
AGAATCTCCCTATTCCACAC+AGG 0.648794 7_3:-81422671 None:intergenic
TCTGACATAGATGATCAAGA+AGG 0.650798 7_3:+81419976 Msa1129440:CDS
TGAAGCGATAAGATCGAATG+TGG 0.660160 7_3:-81422870 None:intergenic
CAGGTCACACGTCTCAAGTG+TGG 0.663378 7_3:+81422533 Msa1129440:intron
AGAGGAATACATGCATTCTG+TGG 0.672300 7_3:+81423123 Msa1129440:three_prime_UTR
ATTTGCGGGAAGAATTAGGG+AGG 0.677321 7_3:+81420116 Msa1129440:CDS
TGGTGGAGTTGCAAAAGGTG+GGG 0.679716 7_3:+81423264 Msa1129440:three_prime_UTR
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7_3:+81422626 Msa1129440:CDS
TTTGCGGGAAGAATTAGGGA+GGG 0.682068 7_3:+81420117 Msa1129440:CDS
AGATGGTTGCATGTAATGCG+TGG 0.696303 7_3:-81422710 None:intergenic
CGAATGTGGTGCATTGACGA+AGG 0.710870 7_3:-81422856 None:intergenic
TGGTTGCATGTAATGCGTGG+AGG 0.724762 7_3:-81422707 None:intergenic
TTATTTAACAGGAATCACGA+CGG 0.739768 7_3:-81423481 None:intergenic
CATCGTTAATGTTCACAGTG+CGG 0.743005 7_3:+81419893 Msa1129440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTCTAAAAAAATATATA+TGG - chr7_3:81420620-81420639 None:intergenic 10.0%
!! CTATATATAAAGAAAATATA+TGG + chr7_3:81421897-81421916 Msa1129440:intron 10.0%
!!! TTATAAGAATAATGTTATTT+TGG + chr7_3:81421965-81421984 Msa1129440:intron 10.0%
!!! TTTGATTTTGATTAAATTAT+AGG - chr7_3:81422088-81422107 None:intergenic 10.0%
!! TATTATATTTATATTATGAC+AGG + chr7_3:81422514-81422533 Msa1129440:intron 10.0%
!! TGATCAATTAAATATAAAAA+GGG - chr7_3:81423825-81423844 None:intergenic 10.0%
!! TTGATCAATTAAATATAAAA+AGG - chr7_3:81423826-81423845 None:intergenic 10.0%
!! TTAAATATAGTCATATTTGT+AGG - chr7_3:81420508-81420527 None:intergenic 15.0%
!!! ATTAGCTAATTTTTAGATTT+TGG - chr7_3:81420780-81420799 None:intergenic 15.0%
!!! CTTTTCAAAACAATTTAATA+AGG - chr7_3:81421125-81421144 None:intergenic 15.0%
!!! CTTATTAAATTGTTTTGAAA+AGG + chr7_3:81421123-81421142 Msa1129440:intron 15.0%
!!! TTGAAAAATATTTTTTGACA+AGG + chr7_3:81421210-81421229 Msa1129440:intron 15.0%
!! CATATATACTCAAAAAAAAA+AGG + chr7_3:81421241-81421260 Msa1129440:intron 15.0%
!! TTATTCAAATACCATAAAAT+TGG - chr7_3:81421304-81421323 None:intergenic 15.0%
!! TGTAAATATAAAAACGTTAA+TGG - chr7_3:81421378-81421397 None:intergenic 15.0%
!! TCTTTATCTAATCAAATTAT+AGG + chr7_3:81421406-81421425 Msa1129440:intron 15.0%
!! AATCAAATTATAGGAAAAAA+CGG + chr7_3:81421415-81421434 Msa1129440:intron 15.0%
!!! TAAAAACCTCTTTTATAATT+AGG + chr7_3:81421604-81421623 Msa1129440:intron 15.0%
!!! AAAAACCTCTTTTATAATTA+GGG + chr7_3:81421605-81421624 Msa1129440:intron 15.0%
!!! TAAAGAAAATATATGGTTTT+TGG + chr7_3:81421904-81421923 Msa1129440:intron 15.0%
!!! AAATATAAGTATAGTTTGTT+AGG + chr7_3:81422036-81422055 Msa1129440:intron 15.0%
!!! GTCAATTTTTAAAAAAAGTA+AGG - chr7_3:81422193-81422212 None:intergenic 15.0%
!! TCAATCTGATTATAATATAT+TGG - chr7_3:81422308-81422327 None:intergenic 15.0%
!! AATATATCACAATAATAAAC+AGG - chr7_3:81423553-81423572 None:intergenic 15.0%
!! AATTAAGTCAATACAAAAAA+AGG - chr7_3:81423687-81423706 None:intergenic 15.0%
!! GAAAAAAATAGTAAAAATCG+AGG - chr7_3:81420598-81420617 None:intergenic 20.0%
!! TTCAATCATATAGATAACTT+TGG - chr7_3:81420677-81420696 None:intergenic 20.0%
!!! GTTTCTCTAAAAAAAAATGA+TGG - chr7_3:81420706-81420725 None:intergenic 20.0%
!! AAGATGTATTCAATACAATT+TGG + chr7_3:81420746-81420765 Msa1129440:intron 20.0%
!! CTAAAAATTAGCTAATAATG+AGG + chr7_3:81420784-81420803 Msa1129440:intron 20.0%
!!! CAAATTGATATCCAATTTTA+TGG + chr7_3:81421290-81421309 Msa1129440:intron 20.0%
!! ATCAAATTATAGGAAAAAAC+GGG + chr7_3:81421416-81421435 Msa1129440:intron 20.0%
!! ATAAAAGATAAGATTAGAGT+TGG - chr7_3:81421826-81421845 None:intergenic 20.0%
!! TCAAAGTTTAATAGCATAAT+TGG - chr7_3:81421945-81421964 None:intergenic 20.0%
!! ATTAACGCAATAAAAAAAAG+CGG + chr7_3:81422157-81422176 Msa1129440:intron 20.0%
!!! TTTAAAGCATGTGAAATATA+GGG - chr7_3:81422283-81422302 None:intergenic 20.0%
!!! ATTCATATGTTTTCTTCAAA+TGG - chr7_3:81422380-81422399 None:intergenic 20.0%
!! TTGTAAACTTGTAATCAATT+CGG - chr7_3:81422465-81422484 None:intergenic 20.0%
!! ATTCCTGTTAAATAAAGTTA+GGG + chr7_3:81423489-81423508 Msa1129440:three_prime_UTR 20.0%
!! CTAAATAAAACAAAGAATAG+GGG - chr7_3:81423614-81423633 None:intergenic 20.0%
!! GCTAAATAAAACAAAGAATA+GGG - chr7_3:81423615-81423634 None:intergenic 20.0%
!!! AAAAAAAGGTATAATCAACT+GGG - chr7_3:81423673-81423692 None:intergenic 20.0%
!! TCAATTAAATATAAAAAGGG+AGG - chr7_3:81423822-81423841 None:intergenic 20.0%
!!! CTATGATTCTTGTTATAATT+AGG - chr7_3:81423857-81423876 None:intergenic 20.0%
!! GATAATAGTTTAACTTCACA+AGG - chr7_3:81419958-81419977 None:intergenic 25.0%
! TGTTTATTACTATCCATTTG+CGG + chr7_3:81420101-81420120 Msa1129440:CDS 25.0%
! AGTTGCTAAAAACAAAAAAG+AGG + chr7_3:81420423-81420442 Msa1129440:intron 25.0%
!!! CGAAGATTTTTTTATCACAT+GGG - chr7_3:81420937-81420956 None:intergenic 25.0%
! TCAATATGTACTTCACAAAT+TGG + chr7_3:81421031-81421050 Msa1129440:intron 25.0%
! CAAACATTAACTTATTGATC+TGG + chr7_3:81421524-81421543 Msa1129440:intron 25.0%
!! AAAATTGACGTATTTTCGTA+CGG + chr7_3:81422204-81422223 Msa1129440:intron 25.0%
!! GTTTAAAGCATGTGAAATAT+AGG - chr7_3:81422284-81422303 None:intergenic 25.0%
!! AAGGGCAAAACTTTTTAAAT+GGG - chr7_3:81422331-81422350 None:intergenic 25.0%
!! TAAGGGCAAAACTTTTTAAA+TGG - chr7_3:81422332-81422351 None:intergenic 25.0%
! AATAAGGTAAGTGCATATAA+GGG - chr7_3:81422349-81422368 None:intergenic 25.0%
! AAATAAGGTAAGTGCATATA+AGG - chr7_3:81422350-81422369 None:intergenic 25.0%
! AAAATTGTTCGTATTCAAGA+TGG - chr7_3:81422730-81422749 None:intergenic 25.0%
! TTCCTTAATAACCATAAGAT+CGG - chr7_3:81423149-81423168 None:intergenic 25.0%
! ATCTTATGGTTATTAAGGAA+CGG + chr7_3:81423149-81423168 Msa1129440:three_prime_UTR 25.0%
! CTCCATTTATATTCTTATGT+GGG - chr7_3:81423321-81423340 None:intergenic 25.0%
! TCTCCATTTATATTCTTATG+TGG - chr7_3:81423322-81423341 None:intergenic 25.0%
! GATTCCTGTTAAATAAAGTT+AGG + chr7_3:81423488-81423507 Msa1129440:three_prime_UTR 25.0%
! TTCCTGTTAAATAAAGTTAG+GGG + chr7_3:81423490-81423509 Msa1129440:three_prime_UTR 25.0%
!! TGCTATGTAATGATAATGAA+AGG + chr7_3:81423527-81423546 Msa1129440:three_prime_UTR 25.0%
!! TGATATATTGACTAGTATCT+AGG + chr7_3:81423564-81423583 Msa1129440:three_prime_UTR 25.0%
! GGCTAAATAAAACAAAGAAT+AGG - chr7_3:81423616-81423635 None:intergenic 25.0%
!!! TCTTTGTTTTATTTAGCCTT+AGG + chr7_3:81423618-81423637 Msa1129440:three_prime_UTR 25.0%
!! CAAAAAAAGGTATAATCAAC+TGG - chr7_3:81423674-81423693 None:intergenic 25.0%
!! GAAGTAAGTTTTTGTTAGTA+TGG + chr7_3:81423720-81423739 Msa1129440:three_prime_UTR 25.0%
! TATATTCAAATCTGTTAGAG+AGG + chr7_3:81423749-81423768 Msa1129440:three_prime_UTR 25.0%
TGACGATAGATAAATATGAC+AGG - chr7_3:81420018-81420037 None:intergenic 30.0%
CACATTTAAGAACCTTAACA+GGG - chr7_3:81420065-81420084 None:intergenic 30.0%
GTTTATTACTATCCATTTGC+GGG + chr7_3:81420102-81420121 Msa1129440:CDS 30.0%
!!! GCGAAGATTTTTTTATCACA+TGG - chr7_3:81420938-81420957 None:intergenic 30.0%
TGAGTTCATGAGCTTAATTT+GGG - chr7_3:81420983-81421002 None:intergenic 30.0%
ATGAGTTCATGAGCTTAATT+TGG - chr7_3:81420984-81421003 None:intergenic 30.0%
!! AACTCGTTTATTTTCAACGT+TGG - chr7_3:81421008-81421027 None:intergenic 30.0%
! TAAACCACTAAGTTTTTGCA+AGG + chr7_3:81421056-81421075 Msa1129440:intron 30.0%
! TTTTCCTTGCAAAAACTTAG+TGG - chr7_3:81421063-81421082 None:intergenic 30.0%
TCGAACCCTAATTATAAAAG+AGG - chr7_3:81421613-81421632 None:intergenic 30.0%
AACTTGTAATCAATTCGGTT+TGG - chr7_3:81422460-81422479 None:intergenic 30.0%
ATGAATTGGAACCATACAAT+GGG + chr7_3:81422572-81422591 Msa1129440:CDS 30.0%
! TTTTTCGCCAAATACCATTA+AGG + chr7_3:81422748-81422767 Msa1129440:CDS 30.0%
TCTTCTTCCTTAATGGTATT+TGG - chr7_3:81422758-81422777 None:intergenic 30.0%
! ATCTTATCGCTTCATGTTTT+TGG + chr7_3:81422879-81422898 Msa1129440:CDS 30.0%
ATTAAAAGCTGAAGTTACAG+AGG + chr7_3:81423105-81423124 Msa1129440:three_prime_UTR 30.0%
GGTGTTTATTTACAACTGTA+AGG + chr7_3:81423170-81423189 Msa1129440:three_prime_UTR 30.0%
GTCCCACATAAGAATATAAA+TGG + chr7_3:81423316-81423335 Msa1129440:three_prime_UTR 30.0%
TTATTTAACAGGAATCACGA+CGG - chr7_3:81423484-81423503 None:intergenic 30.0%
! AAGTTTTTGTTAGTATGGCA+CGG + chr7_3:81423725-81423744 Msa1129440:three_prime_UTR 30.0%
TTGTTATATAGATGGCTCAA+AGG - chr7_3:81423797-81423816 None:intergenic 30.0%
! AGTTTAACTTCACAAGGAGT+GGG - chr7_3:81419952-81419971 None:intergenic 35.0%
! TAGTTTAACTTCACAAGGAG+TGG - chr7_3:81419953-81419972 None:intergenic 35.0%
TCTGACATAGATGATCAAGA+AGG + chr7_3:81419976-81419995 Msa1129440:CDS 35.0%
GCACATTTAAGAACCTTAAC+AGG - chr7_3:81420066-81420085 None:intergenic 35.0%
GATGTAACACTTGATCAGTT+TGG + chr7_3:81420204-81420223 Msa1129440:CDS 35.0%
ATGACGTAAAATTCATCGAG+AGG + chr7_3:81420559-81420578 Msa1129440:intron 35.0%
TTTCTATGCACATGACTTCA+TGG - chr7_3:81420646-81420665 None:intergenic 35.0%
TTTGTAGAGACAAGCAAATG+AGG - chr7_3:81420834-81420853 None:intergenic 35.0%
!! TGATCTGGTGATGTTGATTT+AGG + chr7_3:81421539-81421558 Msa1129440:intron 35.0%
!! GTGATGTTGATTTAGGATCT+TGG + chr7_3:81421546-81421565 Msa1129440:intron 35.0%
ACGCAATAAAAAAAAGCGGA+CGG + chr7_3:81422161-81422180 Msa1129440:intron 35.0%
ACTGTACCAATATGCAACAT+AGG + chr7_3:81422251-81422270 Msa1129440:intron 35.0%
TTTGGACCTATGTTGCATAT+TGG - chr7_3:81422260-81422279 None:intergenic 35.0%
AGCATGTGAAATATAGGGTT+TGG - chr7_3:81422278-81422297 None:intergenic 35.0%
TCAAATGGAGCATGGAAATA+AGG - chr7_3:81422365-81422384 None:intergenic 35.0%
! TGTTTTCTTCAAATGGAGCA+TGG - chr7_3:81422373-81422392 None:intergenic 35.0%
CATTGTATGGTTCCAATTCA+TGG - chr7_3:81422573-81422592 None:intergenic 35.0%
CATGAATTGGAACCATACAA+TGG + chr7_3:81422571-81422590 Msa1129440:CDS 35.0%
AGCAGTATCTTCTTCCTTAA+TGG - chr7_3:81422765-81422784 None:intergenic 35.0%
! CTCTAAAGAAGAAAGATCGA+TGG - chr7_3:81422796-81422815 None:intergenic 35.0%
TTACCGTAATATCCAACAAG+TGG - chr7_3:81423001-81423020 None:intergenic 35.0%
ATTCTTATGTGGGACGATAT+AGG - chr7_3:81423311-81423330 None:intergenic 35.0%
AACCTCTTCATATCTTCAGA+GGG - chr7_3:81423373-81423392 None:intergenic 35.0%
AAACCTCTTCATATCTTCAG+AGG - chr7_3:81423374-81423393 None:intergenic 35.0%
AAGGTAGACATCACAAAACT+AGG - chr7_3:81423451-81423470 None:intergenic 35.0%
! AGCCCCTAACTTTATTTAAC+AGG - chr7_3:81423495-81423514 None:intergenic 35.0%
!!! TGCATCTGTTTTAGTCTCTT+AGG + chr7_3:81423647-81423666 Msa1129440:three_prime_UTR 35.0%
!! GGGAGGATTTGTTATATAGA+TGG - chr7_3:81423805-81423824 None:intergenic 35.0%
CATCGTTAATGTTCACAGTG+CGG + chr7_3:81419893-81419912 Msa1129440:CDS 40.0%
! CAAGAAGGTATGCGTTTCAA+TGG + chr7_3:81419991-81420010 Msa1129440:CDS 40.0%
! CTTTCTCTACCATTGATGGT+TGG - chr7_3:81420041-81420060 None:intergenic 40.0%
ATCCATTTGCGGGAAGAATT+AGG + chr7_3:81420112-81420131 Msa1129440:CDS 40.0%
TCCATTTGCGGGAAGAATTA+GGG + chr7_3:81420113-81420132 Msa1129440:CDS 40.0%
!! AAGTTGATGGTGGATTGTAC+CGG + chr7_3:81420150-81420169 Msa1129440:CDS 40.0%
AATGAACATGACACCTTCAC+CGG - chr7_3:81420172-81420191 None:intergenic 40.0%
!! AGTTGATGGAAGCAATGGAA+TGG - chr7_3:81420246-81420265 None:intergenic 40.0%
!! ATAGGAGTTGATGGAAGCAA+TGG - chr7_3:81420251-81420270 None:intergenic 40.0%
GAACATCGTATAGGAGTTGA+TGG - chr7_3:81420260-81420279 None:intergenic 40.0%
!! TCGATAATTTGTTCTGAGCC+TGG - chr7_3:81420282-81420301 None:intergenic 40.0%
TGAACCTGTATCTGTCGAAT+GGG - chr7_3:81420309-81420328 None:intergenic 40.0%
TTGAACCTGTATCTGTCGAA+TGG - chr7_3:81420310-81420329 None:intergenic 40.0%
GGGCGTGATGTTACATAATT+TGG - chr7_3:81420917-81420936 None:intergenic 40.0%
!! GGGATCTATTGACTTTGAGT+TGG - chr7_3:81420963-81420982 None:intergenic 40.0%
! GTACTGATGTGATTGAAGCT+TGG - chr7_3:81421175-81421194 None:intergenic 40.0%
AGTACGTATGCTTCAGAGTT+TGG - chr7_3:81421646-81421665 None:intergenic 40.0%
TATTGTATGAGCATCCGGTA+CGG - chr7_3:81421687-81421706 None:intergenic 40.0%
! ACGAGTATTGTATGAGCATC+CGG - chr7_3:81421692-81421711 None:intergenic 40.0%
CAATAAAAAAAAGCGGACGG+TGG + chr7_3:81422164-81422183 Msa1129440:intron 40.0%
TGAGACAATTCATGACTGCA+TGG + chr7_3:81422609-81422628 Msa1129440:CDS 40.0%
GAGACAATTCATGACTGCAT+GGG + chr7_3:81422610-81422629 Msa1129440:CDS 40.0%
CATTCAACCTGTGTGGAATA+GGG + chr7_3:81422664-81422683 Msa1129440:CDS 40.0%
GTGGAATAGGGAGATTCTAA+TGG + chr7_3:81422676-81422695 Msa1129440:CDS 40.0%
TGAAGCGATAAGATCGAATG+TGG - chr7_3:81422873-81422892 None:intergenic 40.0%
!! CACAAAAGCATTGCAGTTAG+AGG + chr7_3:81422910-81422929 Msa1129440:CDS 40.0%
GTTAACAATTCGCCACTTGT+TGG + chr7_3:81422986-81423005 Msa1129440:three_prime_UTR 40.0%
! TCGCCACTTGTTGGATATTA+CGG + chr7_3:81422995-81423014 Msa1129440:three_prime_UTR 40.0%
! AAGCTTTGTGGAAACCCATT+TGG + chr7_3:81423058-81423077 Msa1129440:three_prime_UTR 40.0%
AAACCCATTTGGTTATGCAG+TGG + chr7_3:81423069-81423088 Msa1129440:three_prime_UTR 40.0%
ACTCCACTGCATAACCAAAT+GGG - chr7_3:81423075-81423094 None:intergenic 40.0%
AACTCCACTGCATAACCAAA+TGG - chr7_3:81423076-81423095 None:intergenic 40.0%
ATTTGGTTATGCAGTGGAGT+TGG + chr7_3:81423075-81423094 Msa1129440:three_prime_UTR 40.0%
AGAGGAATACATGCATTCTG+TGG + chr7_3:81423123-81423142 Msa1129440:three_prime_UTR 40.0%
GGCCGATCTTATGGTTATTA+AGG + chr7_3:81423144-81423163 Msa1129440:three_prime_UTR 40.0%
AGGCTCTCAGAAGTGAATTT+CGG + chr7_3:81423223-81423242 Msa1129440:three_prime_UTR 40.0%
TCTCAGAAGTGAATTTCGGA+TGG + chr7_3:81423227-81423246 Msa1129440:three_prime_UTR 40.0%
CTCAGAAGTGAATTTCGGAT+GGG + chr7_3:81423228-81423247 Msa1129440:three_prime_UTR 40.0%
TCAGAAGTGAATTTCGGATG+GGG + chr7_3:81423229-81423248 Msa1129440:three_prime_UTR 40.0%
TGAATTTCGGATGGGGTAAA+GGG + chr7_3:81423236-81423255 Msa1129440:three_prime_UTR 40.0%
TCTTCAGAGGGCAAACAAAT+TGG - chr7_3:81423361-81423380 None:intergenic 40.0%
GAAGAGGTTTGCAAAAGAGT+TGG + chr7_3:81423384-81423403 Msa1129440:three_prime_UTR 40.0%
AAAGAGTTGGATGAGATGCT+TGG + chr7_3:81423397-81423416 Msa1129440:three_prime_UTR 40.0%
!!! CACTCGGTGTAAGATGATTT+TGG - chr7_3:81423426-81423445 None:intergenic 40.0%
!! ATCACAAAACTAGGAGCACT+CGG - chr7_3:81423442-81423461 None:intergenic 40.0%
TCACGACGGTACAAACTATA+AGG - chr7_3:81423470-81423489 None:intergenic 40.0%
AATCTGTTAGAGAGGAGAGA+AGG + chr7_3:81423757-81423776 Msa1129440:three_prime_UTR 40.0%
ATCTGTTAGAGAGGAGAGAA+GGG + chr7_3:81423758-81423777 Msa1129440:three_prime_UTR 40.0%
CTATCGTCACCAACCATCAA+TGG + chr7_3:81420029-81420048 Msa1129440:CDS 45.0%
GGGTCTTTCTCTACCATTGA+TGG - chr7_3:81420045-81420064 None:intergenic 45.0%
GGTAGAGAAAGACCCTGTTA+AGG + chr7_3:81420050-81420069 Msa1129440:intron 45.0%
TCCCTAATTCTTCCCGCAAA+TGG - chr7_3:81420117-81420136 None:intergenic 45.0%
ATTTGCGGGAAGAATTAGGG+AGG + chr7_3:81420116-81420135 Msa1129440:CDS 45.0%
TTTGCGGGAAGAATTAGGGA+GGG + chr7_3:81420117-81420136 Msa1129440:CDS 45.0%
GAAGAATTAGGGAGGGTGAT+GGG + chr7_3:81420124-81420143 Msa1129440:CDS 45.0%
TGATGGAAGCAATGGAATGG+AGG - chr7_3:81420243-81420262 None:intergenic 45.0%
CAACTCCTATACGATGTTCC+AGG + chr7_3:81420261-81420280 Msa1129440:intron 45.0%
AGTGCTCCTCTTCATGTCTT+AGG + chr7_3:81421574-81421593 Msa1129440:intron 45.0%
CTCACTCCTAAGACATGAAG+AGG - chr7_3:81421583-81421602 None:intergenic 45.0%
! AAACGATAAAGCACCCGTAC+CGG + chr7_3:81421670-81421689 Msa1129440:intron 45.0%
ATTGTATGAGCATCCGGTAC+GGG - chr7_3:81421686-81421705 None:intergenic 45.0%
!! TACCCGTAACGTAGTGGATA+CGG + chr7_3:81422227-81422246 Msa1129440:intron 45.0%
TACCGTATCCACTACGTTAC+GGG - chr7_3:81422232-81422251 None:intergenic 45.0%
GTACCGTATCCACTACGTTA+CGG - chr7_3:81422233-81422252 None:intergenic 45.0%
GGTTCATAGTGGCCATGAAT+TGG + chr7_3:81422558-81422577 Msa1129440:CDS 45.0%
! TTCCACACAGGTTGAATGGA+AGG - chr7_3:81422662-81422681 None:intergenic 45.0%
! CCTATTCCACACAGGTTGAA+TGG - chr7_3:81422666-81422685 None:intergenic 45.0%
CCATTCAACCTGTGTGGAAT+AGG + chr7_3:81422663-81422682 Msa1129440:CDS 45.0%
AGAATCTCCCTATTCCACAC+AGG - chr7_3:81422674-81422693 None:intergenic 45.0%
AGATGGTTGCATGTAATGCG+TGG - chr7_3:81422713-81422732 None:intergenic 45.0%
! GTGCATTGACGAAGGTGAAA+TGG - chr7_3:81422851-81422870 None:intergenic 45.0%
! AACTGTTTTGCTTACCCAGC+TGG + chr7_3:81423019-81423038 Msa1129440:three_prime_UTR 45.0%
! TCTCAGATTTGACTCGTGCT+AGG + chr7_3:81423203-81423222 Msa1129440:three_prime_UTR 45.0%
GTGAATTTCGGATGGGGTAA+AGG + chr7_3:81423235-81423254 Msa1129440:three_prime_UTR 45.0%
GAATTTCGGATGGGGTAAAG+GGG + chr7_3:81423237-81423256 Msa1129440:three_prime_UTR 45.0%
! GTGTATGGTGGAGTTGCAAA+AGG + chr7_3:81423259-81423278 Msa1129440:three_prime_UTR 45.0%
! TATGGTGGAGTTGCAAAAGG+TGG + chr7_3:81423262-81423281 Msa1129440:three_prime_UTR 45.0%
! ATGGTGGAGTTGCAAAAGGT+GGG + chr7_3:81423263-81423282 Msa1129440:three_prime_UTR 45.0%
! TGCCCTCTGAAGATATGAAG+AGG + chr7_3:81423368-81423387 Msa1129440:three_prime_UTR 45.0%
AACAGATGCAAAGCAGCCTA+AGG - chr7_3:81423637-81423656 None:intergenic 45.0%
CGTTAATGTTCACAGTGCGG+AGG + chr7_3:81419896-81419915 Msa1129440:CDS 50.0%
GGAAGAATTAGGGAGGGTGA+TGG + chr7_3:81420123-81420142 Msa1129440:CDS 50.0%
!! ATGGTGGATTGTACCGGTGA+AGG + chr7_3:81420156-81420175 Msa1129440:CDS 50.0%
CTGAGCCTGGAACATCGTAT+AGG - chr7_3:81420269-81420288 None:intergenic 50.0%
CCTGTATCTGTCGAATGGGA+CGG - chr7_3:81420305-81420324 None:intergenic 50.0%
TCACACGTCTCAAGTGTGGT+GGG + chr7_3:81422537-81422556 Msa1129440:CDS 50.0%
!! CAAGTGTGGTGGGTTCATAG+TGG + chr7_3:81422547-81422566 Msa1129440:CDS 50.0%
CAGCTGCATCACCCATTGTA+TGG - chr7_3:81422586-81422605 None:intergenic 50.0%
CATACAATGGGTGATGCAGC+TGG + chr7_3:81422584-81422603 Msa1129440:CDS 50.0%
CATGACTGCATGGGCAGAAA+TGG + chr7_3:81422619-81422638 Msa1129440:CDS 50.0%
GTCCTTCCATTCAACCTGTG+TGG + chr7_3:81422657-81422676 Msa1129440:CDS 50.0%
GGTTGCATGTAATGCGTGGA+GGG - chr7_3:81422709-81422728 None:intergenic 50.0%
TGGTTGCATGTAATGCGTGG+AGG - chr7_3:81422710-81422729 None:intergenic 50.0%
CATAGCTGCTCTTCGTCTCT+TGG + chr7_3:81422823-81422842 Msa1129440:CDS 50.0%
! CGAATGTGGTGCATTGACGA+AGG - chr7_3:81422859-81422878 None:intergenic 50.0%
GCAGTTAGAGGCAGATGAAG+AGG + chr7_3:81422922-81422941 Msa1129440:CDS 50.0%
GCATTCTGTGGCCGATCTTA+TGG + chr7_3:81423135-81423154 Msa1129440:three_prime_UTR 50.0%
TGGTGGAGTTGCAAAAGGTG+GGG + chr7_3:81423264-81423283 Msa1129440:three_prime_UTR 50.0%
!! GGGACGATATAGGTTGATCC+AGG - chr7_3:81423301-81423320 None:intergenic 50.0%
!! TGATGGGCGCAAGTTGATGG+TGG + chr7_3:81420140-81420159 Msa1129440:CDS 55.0%
CCGTCCCATTCGACAGATAC+AGG + chr7_3:81420302-81420321 Msa1129440:intron 55.0%
GTACGGTACCCGTAACGTAG+TGG + chr7_3:81422221-81422240 Msa1129440:intron 55.0%
CAGGTCACACGTCTCAAGTG+TGG + chr7_3:81422533-81422552 Msa1129440:intron 55.0%
GTCACACGTCTCAAGTGTGG+TGG + chr7_3:81422536-81422555 Msa1129440:CDS 55.0%
ACCACTGCAGCGAAGCTTTG+TGG + chr7_3:81423046-81423065 Msa1129440:three_prime_UTR 55.0%
TCCACAAAGCTTCGCTGCAG+TGG - chr7_3:81423050-81423069 None:intergenic 55.0%
! GGATGGGGTAAAGGGGTGTA+TGG + chr7_3:81423244-81423263 Msa1129440:three_prime_UTR 55.0%
! TGGGGTAAAGGGGTGTATGG+TGG + chr7_3:81423247-81423266 Msa1129440:three_prime_UTR 55.0%
CTGGTGGCACCAACTCTGGT+TGG - chr7_3:81419924-81419943 None:intergenic 60.0%
TCACAAGGAGTGGGTGCAGC+TGG - chr7_3:81419943-81419962 None:intergenic 60.0%
!! GGGTGATGGGCGCAAGTTGA+TGG + chr7_3:81420137-81420156 Msa1129440:CDS 60.0%
GCATGGGCAGAAATGGCTCG+AGG + chr7_3:81422626-81422645 Msa1129440:CDS 60.0%
GAGTCGTCAATGCACGCTCG+AGG + chr7_3:81422957-81422976 Msa1129440:exon 60.0%
GGAGTTGCAAAAGGTGGGGC+TGG + chr7_3:81423268-81423287 Msa1129440:three_prime_UTR 60.0%
! GGTGGGGCTGGAACTTTTCC+TGG + chr7_3:81423280-81423299 Msa1129440:three_prime_UTR 60.0%
!! GCGGAGGTGCCAACCAGAGT+TGG + chr7_3:81419912-81419931 Msa1129440:CDS 65.0%
GCAGCTGGTGGCACCAACTC+TGG - chr7_3:81419928-81419947 None:intergenic 65.0%
CAAGGAGTGGGTGCAGCTGG+TGG - chr7_3:81419940-81419959 None:intergenic 65.0%
! CTGCAGTGGTGACGCCAGCT+GGG - chr7_3:81423036-81423055 None:intergenic 65.0%
! GCTGCAGTGGTGACGCCAGC+TGG - chr7_3:81423037-81423056 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81419883 81423883 81419883 ID=Msa1129440;Name=Msa1129440
chr7_3 mRNA 81419883 81423883 81419883 ID=Msa1129440-mRNA-1;Parent=Msa1129440;Name=Msa1129440-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0.33|1|0.5|0.33|3|925|269
chr7_3 exon 81419883 81420065 81419883 ID=Msa1129440-mRNA-1:exon:23663;Parent=Msa1129440-mRNA-1
chr7_3 exon 81420072 81420275 81420072 ID=Msa1129440-mRNA-1:exon:23664;Parent=Msa1129440-mRNA-1
chr7_3 exon 81422536 81423883 81422536 ID=Msa1129440-mRNA-1:exon:23665;Parent=Msa1129440-mRNA-1
chr7_3 CDS 81419883 81420065 81419883 ID=Msa1129440-mRNA-1:cds;Parent=Msa1129440-mRNA-1
chr7_3 CDS 81420072 81420275 81420072 ID=Msa1129440-mRNA-1:cds;Parent=Msa1129440-mRNA-1
chr7_3 CDS 81422536 81422958 81422536 ID=Msa1129440-mRNA-1:cds;Parent=Msa1129440-mRNA-1
chr7_3 three_prime_UTR 81422959 81423883 81422959 ID=Msa1129440-mRNA-1:three_prime_utr;Parent=Msa1129440-mRNA-1
Gene Sequence

>Msa1129440

ATGACTTCGTCATCGTTAATGTTCACAGTGCGGAGGTGCCAACCAGAGTTGGTGCCACCAGCTGCACCCACTCCTTGTGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGTATGCGTTTCAATGGTCCTGTCATATTTATCTATCGTCACCAACCATCAATGGTAGAGAAAGACCCTGTTCTTAAATGTGCACTCTCAAAAACACTTGTTTATTACTATCCATTTGCGGGAAGAATTAGGGAGGGTGATGGGCGCAAGTTGATGGTGGATTGTACCGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAGTTTGGTGATGCTCTACATCCTCCATTCCATTGCTTCCATCAACTCCTATACGATGTCACACGTCTCAAGTGTGGTGGGTTCATAGTGGCCATGAATTGGAACCATACAATGGGTGATGCAGCTGGTTTGAGACAATTCATGACTGCATGGGCAGAAATGGCTCGAGGAGCACATCGTCCTTCCATTCAACCTGTGTGGAATAGGGAGATTCTAATGGCAAGAGACCCTCCACGCATTACATGCAACCATCTTGAATACGAACAATTTTTTTCGCCAAATACCATTAAGGAAGAAGATACTGCTTCTCTAGTCCATCGATCTTTCTTCTTTAGAGCTTCTGACATAGCTGCTCTTCGTCTCTTGGTTCCATTTCACCTTCGTCAATGCACCACATTCGATCTTATCGCTTCATGTTTTTGGTGTTGTCGCACAAAAGCATTGCAGTTAGAGGCAGATGAAGAGGTACGAATGATGTGA
Protein sequence

>Msa1129440

MTSSSLMFTVRRCQPELVPPAAPTPCEVKLLSDIDDQEGMRFNGPVIFIYRHQPSMVEKDPVLKCALSKTLVYYYPFAGRIREGDGRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFHCFHQLLYDVTRLKCGGFIVAMNWNHTMGDAAGLRQFMTAWAEMARGAHRPSIQPVWNREILMARDPPRITCNHLEYEQFFSPNTIKEEDTASLVHRSFFFRASDIAALRLLVPFHLRQCTTFDLIASCFWCCRTKALQLEADEEVRMM*