AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129480 MtrunA17_Chr7g0274241 96.957 460 11 1 16 472 1 460 0.0 904
Msa1129480 MtrunA17_Chr5g0398901 41.905 105 58 1 350 451 2 106 4.24e-17 84.0
Msa1129480 MtrunA17_Chr5g0398901 34.211 114 72 1 350 460 392 505 2.09e-15 78.6
Msa1129480 MtrunA17_Chr4g0010051 25.401 374 234 12 33 396 22 360 1.90e-16 81.3
Msa1129480 MtrunA17_Chr4g0064931 31.532 222 147 3 64 280 30 251 4.86e-16 80.9
Msa1129480 MtrunA17_Chr1g0211241 29.412 255 169 6 28 275 96 346 9.83e-15 76.6
Msa1129480 MtrunA17_Chr2g0328031 27.660 282 170 7 24 298 5 259 1.91e-14 75.1
Msa1129480 MtrunA17_Chr5g0418551 31.214 173 114 3 100 267 50 222 1.63e-13 70.5
Msa1129480 MtrunA17_Chr5g0418551 30.872 149 99 3 61 206 79 226 3.46e-11 63.5
Msa1129480 MtrunA17_Chr2g0277651 32.704 159 100 3 129 286 533 685 3.71e-13 72.0
Msa1129480 MtrunA17_Chr1g0166441 34.579 107 67 1 354 457 15 121 9.37e-13 69.3
Msa1129480 MtrunA17_Chr3g0138141 29.557 203 137 4 144 343 108 307 2.34e-12 68.9
Msa1129480 MtrunA17_Chr4g0031491 27.798 277 163 8 74 344 51 296 3.17e-12 68.6
Msa1129480 MtrunA17_Chr5g0434371 30.337 178 120 3 111 286 562 737 3.06e-11 65.9
Msa1129480 MtrunA17_Chr5g0405451 28.289 152 107 2 129 278 261 412 4.25e-11 64.7
Msa1129480 MtrunA17_Chr5g0448561 35.714 98 59 2 352 445 417 514 4.46e-11 65.1
Msa1129480 MtrunA17_Chr6g0461061 29.032 186 129 2 97 279 170 355 9.17e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129480 AT3G04710.3 66.667 459 143 3 12 467 221 672 0.0 605
Msa1129480 AT3G04710.1 67.033 455 140 3 16 467 1 448 0.0 604
Msa1129480 AT3G04710.2 67.033 455 139 4 16 467 1 447 0.0 598
Msa1129480 AT4G12400.2 45.714 105 54 1 350 451 2 106 1.39e-19 92.0
Msa1129480 AT4G12400.2 35.088 114 71 1 350 460 369 482 1.91e-16 82.4
Msa1129480 AT4G12400.1 45.714 105 54 1 350 451 2 106 1.74e-19 91.7
Msa1129480 AT4G12400.1 35.088 114 71 1 350 460 369 482 2.49e-16 82.0
Msa1129480 AT1G62740.1 39.286 112 65 1 350 458 2 113 1.42e-16 82.8
Msa1129480 AT1G62740.1 33.929 112 71 1 352 460 384 495 1.65e-15 79.3
Msa1129480 AT5G20350.1 31.556 225 145 5 63 280 24 246 2.28e-14 75.9
Msa1129480 AT1G12270.1 34.821 112 70 1 352 460 385 496 2.41e-14 75.9
Msa1129480 AT1G12270.1 39.286 112 65 1 350 458 2 113 6.77e-14 74.3
Msa1129480 AT1G04190.1 37.624 101 60 1 354 451 19 119 6.40e-14 73.2
Msa1129480 AT2G03430.1 29.891 184 120 5 91 267 34 215 1.42e-13 70.9
Msa1129480 AT2G03430.1 31.875 160 101 3 51 206 64 219 5.56e-11 63.2
Msa1129480 AT5G37500.1 33.146 178 115 3 111 286 538 713 4.35e-13 72.0
Msa1129480 AT2G14255.1 24.878 410 251 14 34 433 29 391 1.16e-12 70.5
Msa1129480 AT4G32500.1 28.774 212 139 5 140 347 545 748 1.65e-12 70.5
Msa1129480 AT2G28840.1 27.119 236 145 4 69 298 45 259 5.13e-12 68.2
Msa1129480 AT4G35230.1 30.000 160 97 4 283 428 324 482 8.17e-12 67.8
Msa1129480 AT2G25600.1 27.397 219 148 5 140 355 547 757 9.08e-11 64.7

Find 112 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACCATTGCTAGCAATTT+AGG 0.149520 7_3:-81448195 Msa1129480:CDS
AGAAGGAATAACATCAATTT+TGG 0.161591 7_3:+81445749 None:intergenic
ATCTGTTGCAGCTGATTCTT+TGG 0.215917 7_3:-81446960 Msa1129480:CDS
TTTAATTGCTTCCACTGTTT+TGG 0.221129 7_3:+81448407 None:intergenic
AAATTGATGTTATTCCTTCT+TGG 0.223369 7_3:-81445746 Msa1129480:CDS
TACATATCAATAAGGTTAAA+AGG 0.270063 7_3:+81443252 None:intergenic
ATTACAGATTGTTCTCGATA+TGG 0.285003 7_3:-81448641 Msa1129480:CDS
ATTGGTCCAAAGCTTGTTAT+AGG 0.291093 7_3:-81443893 Msa1129480:CDS
GCATTGGCGCATTGTGAAAA+TGG 0.294690 7_3:-81443120 Msa1129480:three_prime_UTR
CTTCCAGCTGCAACCTGTAT+TGG 0.297839 7_3:+81445813 None:intergenic
TGACAACTACGGTTTATCTT+TGG 0.308207 7_3:+81443329 None:intergenic
TTCGGGAACACCGTTGGTTT+GGG 0.325527 7_3:-81447756 Msa1129480:CDS
ATTCGGGAACACCGTTGGTT+TGG 0.327829 7_3:-81447757 Msa1129480:CDS
TTTAGTCTCTTATCTTTGTA+AGG 0.328029 7_3:+81443293 None:intergenic
ACACCGTTGGTTTGGGCTGC+TGG 0.331465 7_3:-81447749 Msa1129480:CDS
TTGCACATTGCAGCTGATAA+TGG 0.333370 7_3:-81446176 Msa1129480:CDS
TTGCATCATTCTGCTGGAAT+AGG 0.335655 7_3:-81448162 Msa1129480:intron
TTAATATGGACCGCCATTAT+AGG 0.336158 7_3:-81443062 Msa1129480:three_prime_UTR
ATCTTACGAGTACAGTTTAC+TGG 0.344120 7_3:-81443213 Msa1129480:three_prime_UTR
ATTCCTTCTTGGACTATTGA+TGG 0.346294 7_3:-81445735 Msa1129480:CDS
TCTCATTCATGCTGCACGTC+AGG 0.349718 7_3:-81448262 Msa1129480:CDS
GATCAGTTCCTGCTTTCAAC+AGG 0.361386 7_3:+81446132 None:intergenic
CCCGAATCACTTTCTAAGTC+AGG 0.367297 7_3:+81447773 None:intergenic
CAACTTTCAACACAGGGTTT+TGG 0.369762 7_3:-81448670 Msa1129480:intron
TGTCAAGGCTCAGGTTAATA+TGG 0.374055 7_3:-81443076 Msa1129480:three_prime_UTR
TTTACAAGCTCCTTGCTCTC+AGG 0.376147 7_3:+81443705 None:intergenic
CTATTATGAACAACCTATAA+TGG 0.379743 7_3:+81443049 None:intergenic
AAAGAAAATACATATCAATA+AGG 0.394572 7_3:+81443244 None:intergenic
TCCTGACTTAGAAAGTGATT+CGG 0.397766 7_3:-81447774 Msa1129480:CDS
CCATCATCAGTTTCAGCATT+GGG 0.414646 7_3:+81447001 None:intergenic
CCTGACTTAGAAAGTGATTC+GGG 0.427650 7_3:-81447773 Msa1129480:CDS
CTTTAAGAGATCGAGATTGC+CGG 0.435481 7_3:+81448552 None:intergenic
AGGAGCTTGTAAATGCGTTC+AGG 0.442269 7_3:-81443695 Msa1129480:intron
GCCTTCCCTATAACAAGCTT+TGG 0.445915 7_3:+81443887 None:intergenic
TGCAAGTGCGTCGGAAGCAT+CGG 0.447294 7_3:+81448615 None:intergenic
GAAGCTGGAAGAAAATTTCA+TGG 0.454075 7_3:-81443357 Msa1129480:CDS
ACGGCTTTGCATCATTCTGC+TGG 0.454550 7_3:-81448168 Msa1129480:CDS
ATCAAAATCAAGAGGGGATG+AGG 0.458977 7_3:-81444328 Msa1129480:CDS
ATGCTTAGAGCTGTTAATAC+AGG 0.462858 7_3:-81446936 Msa1129480:intron
TTGGTCCAAAGCTTGTTATA+GGG 0.462903 7_3:-81443892 Msa1129480:CDS
TAAATGCTAAAGAAAATAAC+CGG 0.465720 7_3:-81444985 Msa1129480:CDS
TAACAAGCTTTGGACCAATC+TGG 0.465796 7_3:+81443897 None:intergenic
TTCCTTCTTGGACTATTGAT+GGG 0.466672 7_3:-81445734 Msa1129480:CDS
GAAGCTAGGTCAAGCTGAGC+AGG 0.467307 7_3:-81443955 Msa1129480:CDS
TACAGGGAAGCTGTTGAAGC+TGG 0.468882 7_3:-81443372 Msa1129480:intron
CATTGTGAAAATGGCAATGC+AGG 0.472920 7_3:-81443111 Msa1129480:three_prime_UTR
ATCTTGAAATATTATAGCAT+TGG 0.473747 7_3:-81443136 Msa1129480:three_prime_UTR
TAAGTCAGGATTAACTCCTC+TGG 0.476327 7_3:+81447787 None:intergenic
CTTCCGACGCACTTGCAGTT+AGG 0.476513 7_3:-81448609 Msa1129480:CDS
GCTAAGTATCTTATTGATCA+TGG 0.477834 7_3:-81448225 Msa1129480:CDS
GCAAGTGCGTCGGAAGCATC+GGG 0.488101 7_3:+81448616 None:intergenic
CTCACCTCGTCAGAGACATT+AGG 0.490050 7_3:+81446110 None:intergenic
GCCATCATCAGTTTCAGCAT+TGG 0.492771 7_3:+81447000 None:intergenic
TGAATGCAATGTACCATCGC+TGG 0.498194 7_3:+81443998 None:intergenic
ATAAATTCCCTGTTGAAAGC+AGG 0.500352 7_3:-81446140 Msa1129480:CDS
TTACAAGCTCCTTGCTCTCA+GGG 0.500721 7_3:+81443706 None:intergenic
TTAGTCTCTTATCTTTGTAA+GGG 0.511409 7_3:+81443294 None:intergenic
ATTGCATGTTGTCAAGGCTC+AGG 0.514065 7_3:-81443085 Msa1129480:three_prime_UTR
TAAAAGGAATGACTATCATA+CGG 0.521638 7_3:-81444301 Msa1129480:CDS
AATACAGGTTGCAGCTGGAA+GGG 0.537141 7_3:-81445811 Msa1129480:CDS
GGATGGTGTTAAGCCAATAC+AGG 0.538177 7_3:-81445826 Msa1129480:CDS
CAATACAGGTTGCAGCTGGA+AGG 0.538296 7_3:-81445812 Msa1129480:CDS
GAATGCAATGTACCATCGCT+GGG 0.539778 7_3:+81443999 None:intergenic
AAGCCAATACAGGTTGCAGC+TGG 0.541821 7_3:-81445816 Msa1129480:CDS
CTCATTCATGCTGCACGTCA+GGG 0.549715 7_3:-81448261 Msa1129480:CDS
AACACTTGACCCTGAGAGCA+AGG 0.550632 7_3:-81443715 Msa1129480:CDS
ATACAGGTTGCAGCTGGAAG+GGG 0.552229 7_3:-81445810 Msa1129480:CDS
TGCTAGCAATTTAGGAACCA+CGG 0.556932 7_3:-81448187 Msa1129480:CDS
AGTCTATGTTGGATGAAGCT+AGG 0.562469 7_3:-81443969 Msa1129480:CDS
TTCCTCAACGCTGCTCGTAC+CGG 0.562981 7_3:-81448571 Msa1129480:CDS
ATTCAAATAGAAGTCTATGT+TGG 0.563771 7_3:-81443980 Msa1129480:CDS
AAAGTAAATGTTAGTGCTGG+TGG 0.569289 7_3:-81446209 Msa1129480:CDS
CTTGAGCATTTGCTGTCCAG+AGG 0.572302 7_3:-81447803 Msa1129480:CDS
TCCAAAGCTTGTTATAGGGA+AGG 0.574646 7_3:-81443888 Msa1129480:CDS
CTGCAACAGATGAAATGAGT+GGG 0.576458 7_3:+81446972 None:intergenic
CCTAAATTGCTAGCAATGGT+AGG 0.580362 7_3:+81448195 None:intergenic
ATCCCATCAATAGTCCAAGA+AGG 0.585457 7_3:+81445732 None:intergenic
AGGCAAATTGCATGTTGTCA+AGG 0.586873 7_3:-81443091 Msa1129480:three_prime_UTR
CAGCAGAATCAAAATCAAGA+GGG 0.593887 7_3:-81444335 Msa1129480:CDS
ATCAGTTCCTGCTTTCAACA+GGG 0.598606 7_3:+81446133 None:intergenic
CCCAATGCTGAAACTGATGA+TGG 0.604551 7_3:-81447001 Msa1129480:CDS
TTATCAGCTGCAATGTGCAA+AGG 0.606996 7_3:+81446179 None:intergenic
GTAGAGCATTAAGACCAGAT+TGG 0.608756 7_3:-81443911 Msa1129480:CDS
GGTTCCTAAATTGCTAGCAA+TGG 0.609817 7_3:+81448191 None:intergenic
CTGCCTAACTGCAAGTGCGT+CGG 0.612225 7_3:+81448606 None:intergenic
AAGTGATTCGGGAACACCGT+TGG 0.612822 7_3:-81447762 Msa1129480:CDS
TGCCGGTACGAGCAGCGTTG+AGG 0.612947 7_3:+81448569 None:intergenic
AAACAGCAGCATCCACAGAC+CGG 0.613311 7_3:+81444966 None:intergenic
ATCAATAAGATACTTAGCAG+TGG 0.617709 7_3:+81448230 None:intergenic
GCAGCAGAATCAAAATCAAG+AGG 0.620760 7_3:-81444336 Msa1129480:CDS
GCTAAAGTAAATGTTAGTGC+TGG 0.624109 7_3:-81446212 Msa1129480:CDS
TGACCAGCAGCCCAAACCAA+CGG 0.624815 7_3:+81447746 None:intergenic
ACATGCCAGCAACAAACGCA+AGG 0.626173 7_3:+81443860 None:intergenic
CAAAGATTTATCCAAAACAG+TGG 0.629444 7_3:-81448418 Msa1129480:CDS
GCAGGCTTTAGCTGATGCAA+AGG 0.635071 7_3:-81443937 Msa1129480:CDS
ATTGATTTGAATCCCAGCGA+TGG 0.637054 7_3:-81444011 Msa1129480:CDS
ATTAAAGATGCAAACAAGCG+TGG 0.639246 7_3:-81448390 Msa1129480:CDS
GCAGCTGGAAGGGGAAATCG+TGG 0.646088 7_3:-81445801 Msa1129480:CDS
TAAAGAAAATAACCGGTCTG+TGG 0.653075 7_3:-81444978 Msa1129480:CDS
AGCAGAATGATGCAAAGCCG+TGG 0.654699 7_3:+81448170 None:intergenic
GCTGCAACAGATGAAATGAG+TGG 0.659045 7_3:+81446971 None:intergenic
ATTGATGATAAAGACGAAGA+CGG 0.662139 7_3:-81448294 Msa1129480:CDS
AGCAGAATCAAAATCAAGAG+GGG 0.665063 7_3:-81444334 Msa1129480:CDS
ATTTGCGGAACAATTAGACG+AGG 0.679877 7_3:-81448442 Msa1129480:CDS
TTATGAACAACCTATAATGG+CGG 0.682752 7_3:+81443052 None:intergenic
TTTGCGGAACAATTAGACGA+GGG 0.690385 7_3:-81448441 Msa1129480:CDS
GTCACTGTTCTATTAAAACA+TGG 0.691599 7_3:-81447707 Msa1129480:CDS
TGCAACAGATGAAATGAGTG+GGG 0.693780 7_3:+81446973 None:intergenic
ATAAGAGACTAAAACAACGT+GGG 0.698578 7_3:-81443283 Msa1129480:three_prime_UTR
TGATCCTAATGTCTCTGACG+AGG 0.709103 7_3:-81446114 Msa1129480:intron
GATAAGAGACTAAAACAACG+TGG 0.753504 7_3:-81443284 Msa1129480:three_prime_UTR
TCGAGAGCAAAATATCCCTG+AGG 0.758992 7_3:-81444942 Msa1129480:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATACTAATTAGAA+AGG - chr7_3:81449272-81449291 Msa1129480:intron 10.0%
!!! GTTTTTTTTTTTTTTTGAAG+TGG - chr7_3:81443021-81443040 Msa1129480:three_prime_UTR 15.0%
!!! TTGAATAATTTAATTTTTGG+TGG + chr7_3:81443447-81443466 None:intergenic 15.0%
!! ACAAAATAAAAAAGGATTAA+TGG + chr7_3:81443629-81443648 None:intergenic 15.0%
!!! TTGTTTTCACAAAATAAAAA+AGG + chr7_3:81443637-81443656 None:intergenic 15.0%
!!! ATATATAAAGGTTATGTTTT+GGG + chr7_3:81443714-81443733 None:intergenic 15.0%
!! AATATACTATGTTTATGATT+TGG - chr7_3:81445570-81445589 Msa1129480:intron 15.0%
!!! TAAATTTTCTACAATTTTCA+TGG + chr7_3:81445681-81445700 None:intergenic 15.0%
!!! AATTTAGTTCCAAATATTAA+TGG + chr7_3:81446581-81446600 None:intergenic 15.0%
!!! TTTATTTTGTTACAAAGAAA+AGG - chr7_3:81446972-81446991 Msa1129480:CDS 15.0%
!!! TTATTTTGTTACAAAGAAAA+GGG - chr7_3:81446973-81446992 Msa1129480:CDS 15.0%
!! ATATTATACAAAGTTCAAAA+AGG - chr7_3:81447335-81447354 Msa1129480:intron 15.0%
!! TATTATACAAAGTTCAAAAA+GGG - chr7_3:81447336-81447355 Msa1129480:intron 15.0%
!! AAAGAAAATACATATCAATA+AGG + chr7_3:81449206-81449225 None:intergenic 15.0%
!!! TTTTTTTTTTTTTGAAGTGG+AGG - chr7_3:81443024-81443043 Msa1129480:three_prime_UTR 20.0%
!!! TTTTTTTTTTTTGAAGTGGA+GGG - chr7_3:81443025-81443044 Msa1129480:three_prime_UTR 20.0%
!! TTACAATGAACTACAAAAAT+AGG - chr7_3:81443119-81443138 Msa1129480:three_prime_UTR 20.0%
!!! ATTTTACTCTTTTTTTTTCC+CGG - chr7_3:81443396-81443415 Msa1129480:intron 20.0%
!! ATATGTTAAACACTAAGTAT+CGG + chr7_3:81443518-81443537 None:intergenic 20.0%
!!! CATATATAAAGGTTATGTTT+TGG + chr7_3:81443715-81443734 None:intergenic 20.0%
!!! TATTGTTTTCATAGAATTTG+CGG - chr7_3:81443990-81444009 Msa1129480:CDS 20.0%
!! AAGTAACACAAATTAAGAAA+TGG + chr7_3:81444786-81444805 None:intergenic 20.0%
!! GAATTCTATATCTATTTGAT+TGG - chr7_3:81444871-81444890 Msa1129480:intron 20.0%
!! TACTAATATGCTTATTACAT+GGG - chr7_3:81445284-81445303 Msa1129480:intron 20.0%
!! ACTAAATTGAAAACTTAACA+CGG + chr7_3:81445342-81445361 None:intergenic 20.0%
!! CATAGTATATTGTTTAGTAA+GGG + chr7_3:81445561-81445580 None:intergenic 20.0%
!! ACATAGTATATTGTTTAGTA+AGG + chr7_3:81445562-81445581 None:intergenic 20.0%
!! AATTGTAGAAAATTTATCAG+TGG - chr7_3:81445685-81445704 Msa1129480:intron 20.0%
!!! ACTAGCAGTTTAATTTTTAA+TGG + chr7_3:81445836-81445855 None:intergenic 20.0%
!! ATTGTTATGGATATATAACA+TGG + chr7_3:81445890-81445909 None:intergenic 20.0%
!! AATCAACTAACTAATTGTTA+TGG + chr7_3:81445903-81445922 None:intergenic 20.0%
!! AAACATCTATCTAATGAAAA+AGG - chr7_3:81445997-81446016 Msa1129480:intron 20.0%
!! AACATCTATCTAATGAAAAA+GGG - chr7_3:81445998-81446017 Msa1129480:intron 20.0%
!! GAATACAAGAAAATACTATT+GGG + chr7_3:81446464-81446483 None:intergenic 20.0%
!! AGAATACAAGAAAATACTAT+TGG + chr7_3:81446465-81446484 None:intergenic 20.0%
!!! AACTAAATTTTATGTCTGTT+TGG - chr7_3:81446592-81446611 Msa1129480:intron 20.0%
!!! CTTTGTATTTTAAGATAATG+CGG + chr7_3:81446903-81446922 None:intergenic 20.0%
!! TATACTCTTAAAGTTCAAAA+AGG - chr7_3:81447166-81447185 Msa1129480:intron 20.0%
!! ATACTCTTAAAGTTCAAAAA+GGG - chr7_3:81447167-81447186 Msa1129480:intron 20.0%
!!! TTTTAAACTTTAAGTGATTG+TGG - chr7_3:81447281-81447300 Msa1129480:intron 20.0%
!! TAAATGCTAAAGAAAATAAC+CGG - chr7_3:81447462-81447481 Msa1129480:intron 20.0%
!! GTACAGCTAATATATTTAAT+AGG + chr7_3:81447539-81447558 None:intergenic 20.0%
!!! ATTTTGCAATAGTTAATGTA+TGG - chr7_3:81448816-81448835 Msa1129480:intron 20.0%
!! TACATATCAATAAGGTTAAA+AGG + chr7_3:81449198-81449217 None:intergenic 20.0%
!! ATCTTGAAATATTATAGCAT+TGG - chr7_3:81449311-81449330 Msa1129480:intron 20.0%
!! AAAGTTAATTGACTTAGAAG+TGG - chr7_3:81443183-81443202 Msa1129480:three_prime_UTR 25.0%
!! AATGTTAATTGACTTAGAAG+TGG - chr7_3:81443258-81443277 Msa1129480:three_prime_UTR 25.0%
!! TATAATCCAAATCGTGTTTT+TGG + chr7_3:81443329-81443348 None:intergenic 25.0%
! TTTGGATTATAGAATCCAAA+CGG - chr7_3:81443338-81443357 Msa1129480:CDS 25.0%
! ATGAACAATCTCAAATTACA+TGG - chr7_3:81443597-81443616 Msa1129480:intron 25.0%
! AGAGTAGTCAACATATATAA+AGG + chr7_3:81443726-81443745 None:intergenic 25.0%
! CGTAACAGAATAATAAAGAA+AGG + chr7_3:81444317-81444336 None:intergenic 25.0%
! AAAAAGAGATAGTTTCTGTT+TGG + chr7_3:81444516-81444535 None:intergenic 25.0%
!! TGGATATTTAGAGTATCAAT+TGG - chr7_3:81444891-81444910 Msa1129480:intron 25.0%
!! ATTTTCTTGAATAGTTTACG+AGG - chr7_3:81445139-81445158 Msa1129480:intron 25.0%
! CTATAATACATTGTCTCATT+AGG + chr7_3:81445202-81445221 None:intergenic 25.0%
! CTACTAATATGCTTATTACA+TGG - chr7_3:81445283-81445302 Msa1129480:intron 25.0%
! AGAAAATTTATCAGTGGAAA+TGG - chr7_3:81445691-81445710 Msa1129480:intron 25.0%
!! CAGTACATTTTTGTAATACT+GGG + chr7_3:81445948-81445967 None:intergenic 25.0%
! CAGTATTACAAAAATGTACT+GGG - chr7_3:81445947-81445966 Msa1129480:intron 25.0%
! ACATTCATCAACAAAATACA+AGG + chr7_3:81446078-81446097 None:intergenic 25.0%
!!! ATAACAAACTTTTAAGGCTA+CGG + chr7_3:81446132-81446151 None:intergenic 25.0%
!! GATAGCATAACAAACTTTTA+AGG + chr7_3:81446138-81446157 None:intergenic 25.0%
! TCAGAAGTTGAAAAATATAC+AGG + chr7_3:81446178-81446197 None:intergenic 25.0%
! CAGTAAAATCCAAATATAGA+TGG + chr7_3:81446202-81446221 None:intergenic 25.0%
!! ATTTGGATTTTACTGTATAC+AGG - chr7_3:81446207-81446226 Msa1129480:CDS 25.0%
! TTCTTATATAAGTAGACTCT+CGG + chr7_3:81446441-81446460 None:intergenic 25.0%
! TGAAAAGATTGGAAAAATCT+TGG + chr7_3:81446493-81446512 None:intergenic 25.0%
! TAGTTCCAAATATTAATGGA+AGG + chr7_3:81446577-81446596 None:intergenic 25.0%
!! AGAAGGAATAACATCAATTT+TGG + chr7_3:81446701-81446720 None:intergenic 25.0%
! AAATTGATGTTATTCCTTCT+TGG - chr7_3:81446701-81446720 Msa1129480:intron 25.0%
!!! TATGTTCCTCCATTTTAATT+TGG + chr7_3:81447024-81447043 None:intergenic 25.0%
! TTCTTTAAACTAACTGATTG+TGG - chr7_3:81447108-81447127 Msa1129480:intron 25.0%
! TATGACTGAATACACATAAT+TGG + chr7_3:81447660-81447679 None:intergenic 25.0%
! AAGAATAAGCAATTGATCAT+GGG + chr7_3:81447973-81447992 None:intergenic 25.0%
! TAAGAATAAGCAATTGATCA+TGG + chr7_3:81447974-81447993 None:intergenic 25.0%
! TAAAAGGAATGACTATCATA+CGG - chr7_3:81448146-81448165 Msa1129480:intron 25.0%
!! TCAAGATTTTACTTGTGTAT+AGG + chr7_3:81448181-81448200 None:intergenic 25.0%
! ATTCAAATAGAAGTCTATGT+TGG - chr7_3:81448467-81448486 Msa1129480:intron 25.0%
! CAATAGTTAATGTATGGTTT+AGG - chr7_3:81448822-81448841 Msa1129480:intron 25.0%
!! TGTATTCATTCATCTTTTAC+AGG - chr7_3:81449058-81449077 Msa1129480:intron 25.0%
!! GTATTCATTCATCTTTTACA+GGG - chr7_3:81449059-81449078 Msa1129480:intron 25.0%
! CATTAGAAAAATGACAACTA+CGG + chr7_3:81449132-81449151 None:intergenic 25.0%
! TTAGTCTCTTATCTTTGTAA+GGG + chr7_3:81449156-81449175 None:intergenic 25.0%
! TTTAGTCTCTTATCTTTGTA+AGG + chr7_3:81449157-81449176 None:intergenic 25.0%
! CTATTATGAACAACCTATAA+TGG + chr7_3:81449401-81449420 None:intergenic 25.0%
AACACACATGCATATATACT+AGG - chr7_3:81443082-81443101 Msa1129480:three_prime_UTR 30.0%
AATACTCCAAAAACACGATT+TGG - chr7_3:81443320-81443339 Msa1129480:exon 30.0%
!!! TTTAATTTTTGGTGGACAAG+AGG + chr7_3:81443439-81443458 None:intergenic 30.0%
ATTGTTTCAACTTTCAACAC+AGG - chr7_3:81443770-81443789 Msa1129480:intron 30.0%
TTGTTTCAACTTTCAACACA+GGG - chr7_3:81443771-81443790 Msa1129480:intron 30.0%
ATTACAGATTGTTCTCGATA+TGG - chr7_3:81443806-81443825 Msa1129480:intron 30.0%
CAAAGATTTATCCAAAACAG+TGG - chr7_3:81444029-81444048 Msa1129480:intron 30.0%
! TTTAATTGCTTCCACTGTTT+TGG + chr7_3:81444043-81444062 None:intergenic 30.0%
!! GATTTGCAGTTATTTTGTTG+AGG - chr7_3:81444116-81444135 Msa1129480:intron 30.0%
! ATTGATGATAAAGACGAAGA+CGG - chr7_3:81444153-81444172 Msa1129480:intron 30.0%
ATCAATAAGATACTTAGCAG+TGG + chr7_3:81444220-81444239 None:intergenic 30.0%
GCTAAGTATCTTATTGATCA+TGG - chr7_3:81444222-81444241 Msa1129480:intron 30.0%
TTAAGATGTTTCTCCAAACA+TGG + chr7_3:81444368-81444387 None:intergenic 30.0%
!! TGATATGTGGTTTTTGTTTC+AGG - chr7_3:81444608-81444627 Msa1129480:intron 30.0%
GTCACTGTTCTATTAAAACA+TGG - chr7_3:81444740-81444759 Msa1129480:intron 30.0%
AAAACAACACCAAGATGAAA+GGG + chr7_3:81445422-81445441 None:intergenic 30.0%
! TGATTTGGATATGTGAAACA+TGG - chr7_3:81445585-81445604 Msa1129480:intron 30.0%
AAATTTATCAGTGGAAATGG+TGG - chr7_3:81445694-81445713 Msa1129480:intron 30.0%
AATTTATCAGTGGAAATGGT+GGG - chr7_3:81445695-81445714 Msa1129480:CDS 30.0%
TCATTTGAGTGACATATTGT+AGG - chr7_3:81445800-81445819 Msa1129480:CDS 30.0%
! GCTAGTATGATAATGTAATC+AGG - chr7_3:81445850-81445869 Msa1129480:intron 30.0%
! CCAGTACATTTTTGTAATAC+TGG + chr7_3:81445949-81445968 None:intergenic 30.0%
CCAGTATTACAAAAATGTAC+TGG - chr7_3:81445946-81445965 Msa1129480:intron 30.0%
! GTTGATGAATGTACCTTAAA+AGG - chr7_3:81446086-81446105 Msa1129480:intron 30.0%
!!! TAACAAACTTTTAAGGCTAC+GGG + chr7_3:81446131-81446150 None:intergenic 30.0%
ACAGGAAATCTATATTCACT+AGG + chr7_3:81446160-81446179 None:intergenic 30.0%
ACTTCTGATCCATCTATATT+TGG - chr7_3:81446190-81446209 Msa1129480:CDS 30.0%
AATTTCCTAACTTCCTCATT+TGG - chr7_3:81446366-81446385 Msa1129480:intron 30.0%
AGTTCTATACTAACATCAGA+AGG + chr7_3:81446399-81446418 None:intergenic 30.0%
GATGTTAGTATAGAACTCAA+TGG - chr7_3:81446402-81446421 Msa1129480:intron 30.0%
TTGTGCCTTCCATTAATATT+TGG - chr7_3:81446569-81446588 Msa1129480:intron 30.0%
! AACATCAATTTTGGATGTCA+CGG + chr7_3:81446692-81446711 None:intergenic 30.0%
AGCAGGACATAGAAAAAATT+AGG + chr7_3:81446788-81446807 None:intergenic 30.0%
!!! TAATTTTTTCTATGTCCTGC+TGG - chr7_3:81446787-81446806 Msa1129480:intron 30.0%
! GAGATAATTACGCTTACTTT+TGG - chr7_3:81446844-81446863 Msa1129480:intron 30.0%
TATTTGCCTTGTAGTTTCAT+AGG - chr7_3:81446923-81446942 Msa1129480:intron 30.0%
AGCTATCCAAATTAAAATGG+AGG - chr7_3:81447015-81447034 Msa1129480:intron 30.0%
CATATAGATTTATTCCTTGC+TGG + chr7_3:81447075-81447094 None:intergenic 30.0%
CATATAGATTTATTCCTTGC+TGG + chr7_3:81447075-81447094 None:intergenic 30.0%
ATTAAGAAATCCACTTTGTC+AGG + chr7_3:81447401-81447420 None:intergenic 30.0%
AATCTTTGTACTGAGTTGTA+AGG - chr7_3:81447418-81447437 Msa1129480:intron 30.0%
ATCTTTGTACTGAGTTGTAA+GGG - chr7_3:81447419-81447438 Msa1129480:intron 30.0%
!!! GCTGTACTTTTTTCTCAATT+TGG - chr7_3:81447552-81447571 Msa1129480:intron 30.0%
TTTCTCATTTATCACTCTTC+TGG - chr7_3:81447836-81447855 Msa1129480:intron 30.0%
ATAATTGTGTGAACTCATCT+AGG - chr7_3:81448065-81448084 Msa1129480:intron 30.0%
TCATTGAGACATAACTAACA+CGG + chr7_3:81448276-81448295 None:intergenic 30.0%
AACTAGACTAGATAAACATG+TGG + chr7_3:81448326-81448345 None:intergenic 30.0%
! TTCTTTTTGAATGTGTTTGC+AGG - chr7_3:81448411-81448430 Msa1129480:CDS 30.0%
ATAAGAGACTAAAACAACGT+GGG - chr7_3:81449164-81449183 Msa1129480:intron 30.0%
TTATGAACAACCTATAATGG+CGG + chr7_3:81449398-81449417 None:intergenic 30.0%
! ATGTTGACTACTCTTGAGTA+AGG - chr7_3:81443732-81443751 Msa1129480:CDS 35.0%
! ACTACTCTTGAGTAAGGTTT+TGG - chr7_3:81443738-81443757 Msa1129480:CDS 35.0%
ATTAAAGATGCAAACAAGCG+TGG - chr7_3:81444057-81444076 Msa1129480:intron 35.0%
AAGTTATCCTTGAGAGCTTA+TGG - chr7_3:81444443-81444462 Msa1129480:intron 35.0%
CATATCACAACAAAATCAGC+AGG + chr7_3:81444595-81444614 None:intergenic 35.0%
!! GCTGATTTTGTTGTGATATG+TGG - chr7_3:81444595-81444614 Msa1129480:intron 35.0%
TCCTGACTTAGAAAGTGATT+CGG - chr7_3:81444673-81444692 Msa1129480:intron 35.0%
! GCATATTGACTATCGAAATG+TGG + chr7_3:81445016-81445035 None:intergenic 35.0%
ATATGCTTATTACATGGGCA+TGG - chr7_3:81445289-81445308 Msa1129480:intron 35.0%
TAATGCTTTCCCTTTCATCT+TGG - chr7_3:81445410-81445429 Msa1129480:intron 35.0%
CAAAACAACACCAAGATGAA+AGG + chr7_3:81445423-81445442 None:intergenic 35.0%
ATGCTTAGAGCTGTTAATAC+AGG - chr7_3:81445511-81445530 Msa1129480:intron 35.0%
CACGATTCTATGAATGATGT+TGG + chr7_3:81445755-81445774 None:intergenic 35.0%
AAGGGAAGAGATAGATACAT+TGG - chr7_3:81446016-81446035 Msa1129480:intron 35.0%
GTTCAAAGCTATAGAAAGCT+GGG - chr7_3:81446047-81446066 Msa1129480:intron 35.0%
GCTAAAGTAAATGTTAGTGC+TGG - chr7_3:81446235-81446254 Msa1129480:intron 35.0%
! AAAGTAAATGTTAGTGCTGG+TGG - chr7_3:81446238-81446257 Msa1129480:intron 35.0%
ATAAATTCCCTGTTGAAAGC+AGG - chr7_3:81446307-81446326 Msa1129480:intron 35.0%
TTTATGTCTGTTTGGATCAC+AGG - chr7_3:81446600-81446619 Msa1129480:intron 35.0%
! ACATCAATTTTGGATGTCAC+GGG + chr7_3:81446691-81446710 None:intergenic 35.0%
ATTCCTTCTTGGACTATTGA+TGG - chr7_3:81446712-81446731 Msa1129480:intron 35.0%
TTCCTTCTTGGACTATTGAT+GGG - chr7_3:81446713-81446732 Msa1129480:intron 35.0%
ATCAGAAAGTAAAAAGCAGC+AGG - chr7_3:81446753-81446772 Msa1129480:intron 35.0%
TGACAACCTATGAAACTACA+AGG + chr7_3:81446932-81446951 None:intergenic 35.0%
! ATTTTTGTTGCCTGACAAAG+TGG - chr7_3:81447388-81447407 Msa1129480:intron 35.0%
TAAAGAAAATAACCGGTCTG+TGG - chr7_3:81447469-81447488 Msa1129480:intron 35.0%
TAATAGGAAAACACACCTCA+GGG + chr7_3:81447523-81447542 None:intergenic 35.0%
TTAATAGGAAAACACACCTC+AGG + chr7_3:81447524-81447543 None:intergenic 35.0%
AATAACCAGCCAAAAACTGA+GGG + chr7_3:81447774-81447793 None:intergenic 35.0%
AAATAACCAGCCAAAAACTG+AGG + chr7_3:81447775-81447794 None:intergenic 35.0%
CAGAATCCTAAGAAGAAGAA+AGG + chr7_3:81447816-81447835 None:intergenic 35.0%
CAGCAGAATCAAAATCAAGA+GGG - chr7_3:81448112-81448131 Msa1129480:intron 35.0%
AGCAGAATCAAAATCAAGAG+GGG - chr7_3:81448113-81448132 Msa1129480:intron 35.0%
ATTGAGACATAACTAACACG+GGG + chr7_3:81448274-81448293 None:intergenic 35.0%
CATTGAGACATAACTAACAC+GGG + chr7_3:81448275-81448294 None:intergenic 35.0%
!! ATTGGTCCAAAGCTTGTTAT+AGG - chr7_3:81448554-81448573 Msa1129480:CDS 35.0%
!! TTGGTCCAAAGCTTGTTATA+GGG - chr7_3:81448555-81448574 Msa1129480:CDS 35.0%
GATTAAAGACTTGTATGTGC+TGG + chr7_3:81449002-81449021 None:intergenic 35.0%
GAAGCTGGAAGAAAATTTCA+TGG - chr7_3:81449090-81449109 Msa1129480:intron 35.0%
TGACAACTACGGTTTATCTT+TGG + chr7_3:81449121-81449140 None:intergenic 35.0%
GATAAGAGACTAAAACAACG+TGG - chr7_3:81449163-81449182 Msa1129480:intron 35.0%
ATCTTACGAGTACAGTTTAC+TGG - chr7_3:81449234-81449253 Msa1129480:intron 35.0%
TTAATATGGACCGCCATTAT+AGG - chr7_3:81449385-81449404 Msa1129480:intron 35.0%
GGATTATAGAATCCAAACGG+AGG - chr7_3:81443341-81443360 Msa1129480:CDS 40.0%
AATCCAAACGGAGGTAATTG+TGG - chr7_3:81443350-81443369 Msa1129480:CDS 40.0%
ATCCAAACGGAGGTAATTGT+GGG - chr7_3:81443351-81443370 Msa1129480:CDS 40.0%
TCCCGGTTAATTGCTCAAAT+TGG - chr7_3:81443413-81443432 Msa1129480:intron 40.0%
GCCAATTTGAGCAATTAACC+GGG + chr7_3:81443417-81443436 None:intergenic 40.0%
GGCCAATTTGAGCAATTAAC+CGG + chr7_3:81443418-81443437 None:intergenic 40.0%
AGCTGCAGTTACGCATATTA+GGG - chr7_3:81443675-81443694 Msa1129480:intron 40.0%
! CAACTTTCAACACAGGGTTT+TGG - chr7_3:81443777-81443796 Msa1129480:intron 40.0%
! CTTTAAGAGATCGAGATTGC+CGG + chr7_3:81443898-81443917 None:intergenic 40.0%
ATTTGCGGAACAATTAGACG+AGG - chr7_3:81444005-81444024 Msa1129480:CDS 40.0%
TTTGCGGAACAATTAGACGA+GGG - chr7_3:81444006-81444025 Msa1129480:CDS 40.0%
! CTTCATTTTGCTGCTCTTGA+AGG - chr7_3:81444084-81444103 Msa1129480:intron 40.0%
CCTAAATTGCTAGCAATGGT+AGG + chr7_3:81444255-81444274 None:intergenic 40.0%
CCTACCATTGCTAGCAATTT+AGG - chr7_3:81444252-81444271 Msa1129480:intron 40.0%
GGTTCCTAAATTGCTAGCAA+TGG + chr7_3:81444259-81444278 None:intergenic 40.0%
TGCTAGCAATTTAGGAACCA+CGG - chr7_3:81444260-81444279 Msa1129480:intron 40.0%
TTGCATCATTCTGCTGGAAT+AGG - chr7_3:81444285-81444304 Msa1129480:CDS 40.0%
GATTGCTCTATGTCCATGTT+TGG - chr7_3:81444352-81444371 Msa1129480:CDS 40.0%
TATCAGTCCATAAGCTCTCA+AGG + chr7_3:81444453-81444472 None:intergenic 40.0%
!! GGTTTTTGTTTCAGGAGACA+CGG - chr7_3:81444616-81444635 Msa1129480:intron 40.0%
TAAGTCAGGATTAACTCCTC+TGG + chr7_3:81444663-81444682 None:intergenic 40.0%
CCTGACTTAGAAAGTGATTC+GGG - chr7_3:81444674-81444693 Msa1129480:intron 40.0%
! GCTTTGTTCTTCCTATCATC+TGG - chr7_3:81444959-81444978 Msa1129480:CDS 40.0%
!! TGCAGAATCGTTTTCTAGAG+TGG + chr7_3:81445237-81445256 None:intergenic 40.0%
CCATCATCAGTTTCAGCATT+GGG + chr7_3:81445449-81445468 None:intergenic 40.0%
TGCAACAGATGAAATGAGTG+GGG + chr7_3:81445477-81445496 None:intergenic 40.0%
CTGCAACAGATGAAATGAGT+GGG + chr7_3:81445478-81445497 None:intergenic 40.0%
! ATCTGTTGCAGCTGATTCTT+TGG - chr7_3:81445487-81445506 Msa1129480:intron 40.0%
! CATGGAGTATCTCTGTATCA+TGG + chr7_3:81445663-81445682 None:intergenic 40.0%
CGTTCAAAGCTATAGAAAGC+TGG - chr7_3:81446046-81446065 Msa1129480:intron 40.0%
!! ACTTGTTGAGACGCCTTTTA+AGG + chr7_3:81446102-81446121 None:intergenic 40.0%
!!! AACTTTTAAGGCTACGGGAT+GGG + chr7_3:81446126-81446145 None:intergenic 40.0%
!!! AAACTTTTAAGGCTACGGGA+TGG + chr7_3:81446127-81446146 None:intergenic 40.0%
! GGATTTTACTGTATACAGGC+AGG - chr7_3:81446211-81446230 Msa1129480:CDS 40.0%
TTATCAGCTGCAATGTGCAA+AGG + chr7_3:81446271-81446290 None:intergenic 40.0%
TTGCACATTGCAGCTGATAA+TGG - chr7_3:81446271-81446290 Msa1129480:intron 40.0%
ATCAGTTCCTGCTTTCAACA+GGG + chr7_3:81446317-81446336 None:intergenic 40.0%
ATGAGCCAAATGAGGAAGTT+AGG + chr7_3:81446374-81446393 None:intergenic 40.0%
AGAAGGTTATGAGCCAAATG+AGG + chr7_3:81446382-81446401 None:intergenic 40.0%
ATCAGAGACGCTGAAAAGAT+TGG + chr7_3:81446504-81446523 None:intergenic 40.0%
CTTATCCAGTGTAGTGCATA+TGG - chr7_3:81446534-81446553 Msa1129480:intron 40.0%
! CATCAATTTTGGATGTCACG+GGG + chr7_3:81446690-81446709 None:intergenic 40.0%
ATCCCATCAATAGTCCAAGA+AGG + chr7_3:81446718-81446737 None:intergenic 40.0%
GCAACGGATAACAACAAAGA+TGG + chr7_3:81447747-81447766 None:intergenic 40.0%
ATAACCAGCCAAAAACTGAG+GGG + chr7_3:81447773-81447792 None:intergenic 40.0%
! TGATTCTGCTGCTCTCTTTT+TGG + chr7_3:81448103-81448122 None:intergenic 40.0%
GCAGCAGAATCAAAATCAAG+AGG - chr7_3:81448111-81448130 Msa1129480:intron 40.0%
ATCAAAATCAAGAGGGGATG+AGG - chr7_3:81448119-81448138 Msa1129480:intron 40.0%
!! ATTGATTTGAATCCCAGCGA+TGG - chr7_3:81448436-81448455 Msa1129480:CDS 40.0%
AGTCTATGTTGGATGAAGCT+AGG - chr7_3:81448478-81448497 Msa1129480:intron 40.0%
! GTAGAGCATTAAGACCAGAT+TGG - chr7_3:81448536-81448555 Msa1129480:intron 40.0%
!! TAACAAGCTTTGGACCAATC+TGG + chr7_3:81448553-81448572 None:intergenic 40.0%
!! TCCAAAGCTTGTTATAGGGA+AGG - chr7_3:81448559-81448578 Msa1129480:CDS 40.0%
!! ATTTGCTATCCTTGTTGCAG+AGG - chr7_3:81448674-81448693 Msa1129480:intron 40.0%
TTCATCAAACCTCTGCAACA+AGG + chr7_3:81448686-81448705 None:intergenic 40.0%
!! AGCTGCAAATGCTTTTTACG+AGG - chr7_3:81448705-81448724 Msa1129480:intron 40.0%
!! GCTGCAAATGCTTTTTACGA+GGG - chr7_3:81448706-81448725 Msa1129480:intron 40.0%
! AAAGACTTGTATGTGCTGGT+TGG + chr7_3:81448998-81449017 None:intergenic 40.0%
CATTGTGAAAATGGCAATGC+AGG - chr7_3:81449336-81449355 Msa1129480:intron 40.0%
AGGCAAATTGCATGTTGTCA+AGG - chr7_3:81449356-81449375 Msa1129480:intron 40.0%
TGTCAAGGCTCAGGTTAATA+TGG - chr7_3:81449371-81449390 Msa1129480:intron 40.0%
! TTTGAAGTGGAGGGTGAGAA+AGG - chr7_3:81443034-81443053 Msa1129480:three_prime_UTR 45.0%
GGTGTAGGGATGTCTGAATT+TGG - chr7_3:81443058-81443077 Msa1129480:three_prime_UTR 45.0%
CTTCGCGTGTATTACAGACA+TGG - chr7_3:81443566-81443585 Msa1129480:intron 45.0%
GAGCTGCAGTTACGCATATT+AGG - chr7_3:81443674-81443693 Msa1129480:intron 45.0%
CATATTAGGGTTTGAGCCCA+CGG - chr7_3:81443688-81443707 Msa1129480:intron 45.0%
!! AAGGTTATGTTTTGGGCCGT+GGG + chr7_3:81443707-81443726 None:intergenic 45.0%
!! AAAGGTTATGTTTTGGGCCG+TGG + chr7_3:81443708-81443727 None:intergenic 45.0%
CCCGAATCACTTTCTAAGTC+AGG + chr7_3:81444677-81444696 None:intergenic 45.0%
CTTCCTATCATCTGGATCTG+TGG - chr7_3:81444967-81444986 Msa1129480:CDS 45.0%
AGACCACAGATCCAGATGAT+AGG + chr7_3:81444973-81444992 None:intergenic 45.0%
CCCAATGCTGAAACTGATGA+TGG - chr7_3:81445446-81445465 Msa1129480:intron 45.0%
GCCATCATCAGTTTCAGCAT+TGG + chr7_3:81445450-81445469 None:intergenic 45.0%
GCTGCAACAGATGAAATGAG+TGG + chr7_3:81445479-81445498 None:intergenic 45.0%
TACTGGGAATCAGTGCTAGT+GGG - chr7_3:81445963-81445982 Msa1129480:intron 45.0%
GATCAGTTCCTGCTTTCAAC+AGG + chr7_3:81446318-81446337 None:intergenic 45.0%
TGATCCTAATGTCTCTGACG+AGG - chr7_3:81446333-81446352 Msa1129480:intron 45.0%
AGTAGACTCTCGGCATTGTT+TGG + chr7_3:81446431-81446450 None:intergenic 45.0%
TGTCTGTTTGGATCACAGGA+TGG - chr7_3:81446604-81446623 Msa1129480:intron 45.0%
! GGATGGTGTTAAGCCAATAC+AGG - chr7_3:81446621-81446640 Msa1129480:intron 45.0%
AATACAGGTTGCAGCTGGAA+GGG - chr7_3:81446636-81446655 Msa1129480:intron 45.0%
ATTCCTTAACTCTGTCCAGC+AGG + chr7_3:81446805-81446824 None:intergenic 45.0%
TGCGGTGACTATTGTAAGCA+CGG + chr7_3:81446885-81446904 None:intergenic 45.0%
TATTCCTTGCTGGAGAATGC+TGG + chr7_3:81447065-81447084 None:intergenic 45.0%
TATTCCTTGCTGGAGAATGC+TGG + chr7_3:81447065-81447084 None:intergenic 45.0%
TCGAGAGCAAAATATCCCTG+AGG - chr7_3:81447505-81447524 Msa1129480:intron 45.0%
AAAAACTGAGGGGAACGCAA+CGG + chr7_3:81447763-81447782 None:intergenic 45.0%
AGCGAGCCTTTCTTCTTCTT+AGG - chr7_3:81447807-81447826 Msa1129480:CDS 45.0%
GACAGTGCACATACTCGATA+GGG + chr7_3:81447871-81447890 None:intergenic 45.0%
AGACAGTGCACATACTCGAT+AGG + chr7_3:81447872-81447891 None:intergenic 45.0%
! GAGGGGATGAGGCTTTTAAA+AGG - chr7_3:81448130-81448149 Msa1129480:intron 45.0%
! TGTTTCTGTGCAGTGTTCAC+TGG - chr7_3:81448296-81448315 Msa1129480:CDS 45.0%
GAATGCAATGTACCATCGCT+GGG + chr7_3:81448451-81448470 None:intergenic 45.0%
TGAATGCAATGTACCATCGC+TGG + chr7_3:81448452-81448471 None:intergenic 45.0%
GCCTTCCCTATAACAAGCTT+TGG + chr7_3:81448563-81448582 None:intergenic 45.0%
TGTCCTGGAGCAAATGTCAA+GGG + chr7_3:81448630-81448649 None:intergenic 45.0%
GAAACGTGAATCATGTGTCC+TGG + chr7_3:81448645-81448664 None:intergenic 45.0%
TTACAAGCTCCTTGCTCTCA+GGG + chr7_3:81448744-81448763 None:intergenic 45.0%
TTTACAAGCTCCTTGCTCTC+AGG + chr7_3:81448745-81448764 None:intergenic 45.0%
AGGAGCTTGTAAATGCGTTC+AGG - chr7_3:81448752-81448771 Msa1129480:intron 45.0%
!! TTGTATGTGCTGGTTGGCAT+TGG + chr7_3:81448992-81449011 None:intergenic 45.0%
! GCATTGGCGCATTGTGAAAA+TGG - chr7_3:81449327-81449346 Msa1129480:intron 45.0%
ATTGCATGTTGTCAAGGCTC+AGG - chr7_3:81449362-81449381 Msa1129480:intron 45.0%
!!! ATATTGAATAATTTAATTTT+TGG + chr7_3:81443450-81443469 None:intergenic 5.0%
AGGGTGAGAAAGGTGGTGTA+GGG - chr7_3:81443044-81443063 Msa1129480:three_prime_UTR 50.0%
CTCCCACAATTACCTCCGTT+TGG + chr7_3:81443356-81443375 None:intergenic 50.0%
CAAACGGAGGTAATTGTGGG+AGG - chr7_3:81443354-81443373 Msa1129480:CDS 50.0%
TCTCATTCATGCTGCACGTC+AGG - chr7_3:81444185-81444204 Msa1129480:intron 50.0%
CTCATTCATGCTGCACGTCA+GGG - chr7_3:81444186-81444205 Msa1129480:intron 50.0%
AGCAGAATGATGCAAAGCCG+TGG + chr7_3:81444280-81444299 None:intergenic 50.0%
ACGGCTTTGCATCATTCTGC+TGG - chr7_3:81444279-81444298 Msa1129480:intron 50.0%
!! CTTGAGCATTTGCTGTCCAG+AGG - chr7_3:81444644-81444663 Msa1129480:intron 50.0%
! AAGTGATTCGGGAACACCGT+TGG - chr7_3:81444685-81444704 Msa1129480:intron 50.0%
! ATTCGGGAACACCGTTGGTT+TGG - chr7_3:81444690-81444709 Msa1129480:intron 50.0%
!! TTCGGGAACACCGTTGGTTT+GGG - chr7_3:81444691-81444710 Msa1129480:intron 50.0%
GTACTGGGAATCAGTGCTAG+TGG - chr7_3:81445962-81445981 Msa1129480:intron 50.0%
CTCACCTCGTCAGAGACATT+AGG + chr7_3:81446340-81446359 None:intergenic 50.0%
CACAGCCATATGCACTACAC+TGG + chr7_3:81446542-81446561 None:intergenic 50.0%
CAGTGTAGTGCATATGGCTG+TGG - chr7_3:81446540-81446559 Msa1129480:intron 50.0%
AAGCCAATACAGGTTGCAGC+TGG - chr7_3:81446631-81446650 Msa1129480:intron 50.0%
CTTCCAGCTGCAACCTGTAT+TGG + chr7_3:81446637-81446656 None:intergenic 50.0%
CAATACAGGTTGCAGCTGGA+AGG - chr7_3:81446635-81446654 Msa1129480:intron 50.0%
ATACAGGTTGCAGCTGGAAG+GGG - chr7_3:81446637-81446656 Msa1129480:intron 50.0%
TGTCCTGCTGGACAGAGTTA+AGG - chr7_3:81446799-81446818 Msa1129480:intron 50.0%
GAGTTGTAAGGGCAATGTGC+AGG - chr7_3:81447430-81447449 Msa1129480:intron 50.0%
AAACAGCAGCATCCACAGAC+CGG + chr7_3:81447484-81447503 None:intergenic 50.0%
! GTTGCGTTCCCCTCAGTTTT+TGG - chr7_3:81447762-81447781 Msa1129480:CDS 50.0%
!!! GCTGCTCTCTTTTTGGCTTC+AGG + chr7_3:81448096-81448115 None:intergenic 50.0%
GACATAACTAACACGGGGCA+TGG + chr7_3:81448269-81448288 None:intergenic 50.0%
! GCAGGCTTTAGCTGATGCAA+AGG - chr7_3:81448510-81448529 Msa1129480:intron 50.0%
ACATGCCAGCAACAAACGCA+AGG + chr7_3:81448590-81448609 None:intergenic 50.0%
TGTCAAGGGGGAAAGGTTTC+AGG + chr7_3:81448616-81448635 None:intergenic 50.0%
GAGCAAATGTCAAGGGGGAA+AGG + chr7_3:81448623-81448642 None:intergenic 50.0%
TCCTGGAGCAAATGTCAAGG+GGG + chr7_3:81448628-81448647 None:intergenic 50.0%
GTCCTGGAGCAAATGTCAAG+GGG + chr7_3:81448629-81448648 None:intergenic 50.0%
GTGTCCTGGAGCAAATGTCA+AGG + chr7_3:81448631-81448650 None:intergenic 50.0%
AACACTTGACCCTGAGAGCA+AGG - chr7_3:81448732-81448751 Msa1129480:intron 50.0%
TACAGGGAAGCTGTTGAAGC+TGG - chr7_3:81449075-81449094 Msa1129480:intron 50.0%
GAAGTGGAGGGTGAGAAAGG+TGG - chr7_3:81443037-81443056 Msa1129480:three_prime_UTR 55.0%
GAGGGTGAGAAAGGTGGTGT+AGG - chr7_3:81443043-81443062 Msa1129480:three_prime_UTR 55.0%
GGAGGTAATTGTGGGAGGCT+GGG - chr7_3:81443359-81443378 Msa1129480:CDS 55.0%
! TGCAAGTGCGTCGGAAGCAT+CGG + chr7_3:81443835-81443854 None:intergenic 55.0%
CTTCCGACGCACTTGCAGTT+AGG - chr7_3:81443838-81443857 Msa1129480:intron 55.0%
CTGCCTAACTGCAAGTGCGT+CGG + chr7_3:81443844-81443863 None:intergenic 55.0%
TTCCTCAACGCTGCTCGTAC+CGG - chr7_3:81443876-81443895 Msa1129480:CDS 55.0%
TGACCAGCAGCCCAAACCAA+CGG + chr7_3:81444704-81444723 None:intergenic 55.0%
CAAGCCAGCATTCTCCAGCA+AGG - chr7_3:81447058-81447077 Msa1129480:intron 55.0%
CAAGCCAGCATTCTCCAGCA+AGG - chr7_3:81447058-81447077 Msa1129480:intron 55.0%
!!! CGTTCCCCTCAGTTTTTGGC+TGG - chr7_3:81447766-81447785 Msa1129480:CDS 55.0%
GAAGCTAGGTCAAGCTGAGC+AGG - chr7_3:81448492-81448511 Msa1129480:intron 55.0%
TCCCCCTTGACATTTGCTCC+AGG - chr7_3:81448624-81448643 Msa1129480:CDS 55.0%
CGGAGGTAATTGTGGGAGGC+TGG - chr7_3:81443358-81443377 Msa1129480:CDS 60.0%
GGTAATTGTGGGAGGCTGGG+CGG - chr7_3:81443362-81443381 Msa1129480:CDS 60.0%
GTAATTGTGGGAGGCTGGGC+GGG - chr7_3:81443363-81443382 Msa1129480:CDS 60.0%
TAATTGTGGGAGGCTGGGCG+GGG - chr7_3:81443364-81443383 Msa1129480:CDS 60.0%
!! GCAAGTGCGTCGGAAGCATC+GGG + chr7_3:81443834-81443853 None:intergenic 60.0%
!! ACACCGTTGGTTTGGGCTGC+TGG - chr7_3:81444698-81444717 Msa1129480:intron 60.0%
GCAGCTGGAAGGGGAAATCG+TGG - chr7_3:81446646-81446665 Msa1129480:intron 60.0%
! CGCAGCCTTGCGTTTGTTGC+TGG - chr7_3:81448582-81448601 Msa1129480:CDS 60.0%
AATTGTGGGAGGCTGGGCGG+GGG - chr7_3:81443365-81443384 Msa1129480:CDS 65.0%
TGCCGGTACGAGCAGCGTTG+AGG + chr7_3:81443881-81443900 None:intergenic 65.0%
ATTGTGGGAGGCTGGGCGGG+GGG - chr7_3:81443366-81443385 Msa1129480:CDS 70.0%
! GGGAGGCTGGGCGGGGGGAA+AGG - chr7_3:81443371-81443390 Msa1129480:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81443013 81449456 81443013 ID=Msa1129480;Name=Msa1129480
chr7_3 mRNA 81443013 81449456 81443013 ID=Msa1129480-mRNA-1;Parent=Msa1129480;Name=Msa1129480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.61|0.84|0.91|0.92|13|322|473
chr7_3 exon 81443013 81443389 81443013 ID=Msa1129480-mRNA-1:exon:23693;Parent=Msa1129480-mRNA-1
chr7_3 exon 81443696 81443773 81443696 ID=Msa1129480-mRNA-1:exon:23692;Parent=Msa1129480-mRNA-1
chr7_3 exon 81443873 81444036 81443873 ID=Msa1129480-mRNA-1:exon:23691;Parent=Msa1129480-mRNA-1
chr7_3 exon 81444281 81444382 81444281 ID=Msa1129480-mRNA-1:exon:23690;Parent=Msa1129480-mRNA-1
chr7_3 exon 81444943 81445017 81444943 ID=Msa1129480-mRNA-1:exon:23689;Parent=Msa1129480-mRNA-1
chr7_3 exon 81445695 81445847 81445695 ID=Msa1129480-mRNA-1:exon:23688;Parent=Msa1129480-mRNA-1
chr7_3 exon 81446115 81446240 81446115 ID=Msa1129480-mRNA-1:exon:23687;Parent=Msa1129480-mRNA-1
chr7_3 exon 81446937 81447023 81446937 ID=Msa1129480-mRNA-1:exon:23686;Parent=Msa1129480-mRNA-1
chr7_3 exon 81447700 81447839 81447700 ID=Msa1129480-mRNA-1:exon:23685;Parent=Msa1129480-mRNA-1
chr7_3 exon 81448163 81448465 81448163 ID=Msa1129480-mRNA-1:exon:23684;Parent=Msa1129480-mRNA-1
chr7_3 exon 81448551 81448677 81448551 ID=Msa1129480-mRNA-1:exon:23683;Parent=Msa1129480-mRNA-1
chr7_3 exon 81449423 81449428 81449423 ID=Msa1129480-mRNA-1:exon:23682;Parent=Msa1129480-mRNA-1
chr7_3 exon 81449451 81449456 81449451 ID=Msa1129480-mRNA-1:exon:23681;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81449451 81449456 81449451 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81449423 81449428 81449423 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81448551 81448677 81448551 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81448163 81448465 81448163 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81447700 81447839 81447700 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81446937 81447023 81446937 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81446115 81446240 81446115 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81445695 81445847 81445695 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81444943 81445017 81444943 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81444281 81444382 81444281 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81443873 81444036 81443873 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81443696 81443773 81443696 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 CDS 81443335 81443389 81443335 ID=Msa1129480-mRNA-1:cds;Parent=Msa1129480-mRNA-1
chr7_3 three_prime_UTR 81443013 81443334 81443013 ID=Msa1129480-mRNA-1:three_prime_utr;Parent=Msa1129480-mRNA-1
Gene Sequence

>Msa1129480

ATGGAGTGGAGGGGTTTTGGTTTTGCATTACAGATTGTTCTCGATATGGCTCCCGATGCTTCCGACGCACTTGCAGTTAGGCAGAAAGTTCAACACTTCCTCAACGCTGCTCGTACCGGCAATCTCGATCTCTTAAAGAAATTTGCGGAACAATTAGACGAGGGCAAAGATTTATCCAAAACAGTGGAAGCAATTAAAGATGCAAACAAGCGTGGTGCACTTCATTTTGCTGCTCTTGAAGGACAAACTCAGATTTGCAGTTATTTTGTTGAGGATTTGAAGCTTCGTATTGATGATAAAGACGAAGACGGTGAAACTGCTCTCATTCATGCTGCACGTCAGGGACACACTGCCACTGCTAAGTATCTTATTGATCATGGTGCTGATCCTACCATTGCTAGCAATTTAGGAACCACGGCTTTGCATCATTCTGCTGGAATAGGAGACACGGATTTACTTGAGCATTTGCTGTCCAGAGGAGTTAATCCTGACTTAGAAAGTGATTCGGGAACACCGTTGGTTTGGGCTGCTGGTCATGCTCAAGAAGCTGCTGTCACTGTTCTATTAAAACATGGTGCAAATCCCAATGCTGAAACTGATGATGGCATTACCCCACTCATTTCATCTGTTGCAGCTGATTCTTTGGCATGCTTAGAGCTGTTAATACAGGCAGGTGCTAAAGTAAATGTTAGTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGAAGTCTAGAACTTATAAATTCCCTGTTGAAAGCAGGAACTGATCCTAATGTCTCTGACGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGAAATCGTGGAGCTGTTGAGATATTGTTCCCCGTGACATCCAAAATTGATGTTATTCCTTCTTGGACTATTGATGGGATACTTGAGCATGTGCAATCAGAAAGTAAAAAGCAGCAGGATGAATCGCTAAATGCTAAAGAAAATAACCGGTCTGTGGATGCTGCTGTTTCTCGAGAGCAAAATATCCCTGAGGTGTCACCTGAAGCCAAAAAGAGAGCAGCAGAATCAAAATCAAGAGGGGATGAGGCTTTTAAAAGGAATGACTATCATACGGCTATAGATTCCTATACACAAGCAATTGATTTGAATCCCAGCGATGGTACATTGCATTCAAATAGAAGTCTATGTTGGATGAAGCTAGGTCAAGCTGAGCAGGCTTTAGCTGATGCAAAGGCATGTAGAGCATTAAGACCAGATTGGTCCAAAGCTTGTTATAGGGAAGGCGCAGCCTTGCGTTTGTTTGATGAAGCTGCAAATGCTTTTTACGAGGGAGTAACACTTGACCCTGAGAGCAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTTGAAGCTGGAAGAAAATTTCATGGCACAACCAAAGATAAACCGTAG

Protein sequence

>Msa1129480

MEWRGFGFALQIVLDMAPDASDALAVRQKVQHFLNAARTGNLDLLKKFAEQLDEGKDLSKTVEAIKDANKRGALHFAALEGQTQICSYFVEDLKLRIDDKDEDGETALIHAARQGHTATAKYLIDHGADPTIASNLGTTALHHSAGIGDTDLLEHLLSRGVNPDLESDSGTPLVWAAGHAQEAAVTVLLKHGANPNAETDDGITPLISSVAADSLACLELLIQAGAKVNVSAGGATPLHIAADNGSLELINSLLKAGTDPNVSDEDGVKPIQVAAGRGNRGAVEILFPVTSKIDVIPSWTIDGILEHVQSESKKQQDESLNAKENNRSVDAAVSREQNIPEVSPEAKKRAAESKSRGDEAFKRNDYHTAIDSYTQAIDLNPSDGTLHSNRSLCWMKLGQAEQALADAKACRALRPDWSKACYREGAALRLFDEAANAFYEGVTLDPESKELVNAFREAVEAGRKFHGTTKDKP*