AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0864820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864820 MtrunA17_Chr5g0447531 94.681 94 5 0 4 97 172 265 1.92e-59 182
Msa0864820 MtrunA17_Chr4g0051941 84.043 94 15 0 4 97 173 266 2.75e-53 167
Msa0864820 MtrunA17_Chr6g0453181 81.915 94 17 0 4 97 172 265 2.65e-52 164
Msa0864820 MtrunA17_Chr6g0453151 81.915 94 17 0 4 97 239 332 3.39e-52 166
Msa0864820 MtrunA17_Chr6g0453141 81.915 94 17 0 4 97 172 265 3.96e-52 164
Msa0864820 MtrunA17_Chr6g0453171 79.787 94 19 0 4 97 5 98 7.77e-52 157
Msa0864820 MtrunA17_Chr6g0464511 79.787 94 19 0 4 97 119 212 7.25e-51 159
Msa0864820 MtrunA17_Chr6g0453161 82.979 94 16 0 4 97 174 267 3.98e-50 165
Msa0864820 MtrunA17_Chr6g0453161 81.915 94 17 0 4 97 439 532 1.09e-49 164
Msa0864820 MtrunA17_Chr2g0318521 73.958 96 22 3 4 97 170 264 9.98e-41 134
Msa0864820 MtrunA17_Chr6g0476641 69.118 68 21 0 18 85 207 274 2.91e-27 100
Msa0864820 MtrunA17_Chr1g0157481 61.728 81 21 2 15 85 242 322 5.94e-26 98.2
Msa0864820 MtrunA17_Chr5g0448411 59.459 74 29 1 13 85 194 267 7.26e-24 91.7
Msa0864820 MtrunA17_Chr5g0448421 59.459 74 29 1 13 85 196 269 7.50e-24 91.7
Msa0864820 MtrunA17_Chr6g0462031 56.061 66 28 1 21 85 168 233 7.43e-19 77.8
Msa0864820 MtrunA17_Chr3g0133901 55.224 67 29 1 16 81 187 253 4.02e-18 76.3
Msa0864820 MtrunA17_Chr4g0006181 56.250 64 27 1 20 82 273 336 1.81e-17 75.5
Msa0864820 MtrunA17_Chr8g0345631 52.941 68 30 2 16 81 189 256 9.44e-16 70.1
Msa0864820 MtrunA17_Chr3g0092091 50.769 65 28 1 21 85 184 244 4.15e-14 65.5
Msa0864820 MtrunA17_Chr2g0296081 48.438 64 29 1 21 84 36 95 3.71e-13 60.1
Msa0864820 MtrunA17_Chr3g0113311 55.932 59 22 2 17 71 212 270 2.80e-12 60.5
Msa0864820 MtrunA17_Chr2g0301081 43.243 74 40 2 21 92 193 266 1.24e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0864820 AT3G27690.1 85.106 94 14 0 4 97 173 266 6.57e-55 171
Msa0864820 AT3G27690.2 85.106 94 14 0 4 97 205 298 1.11e-54 172
Msa0864820 AT2G05070.1 84.043 94 15 0 4 97 172 265 2.74e-54 169
Msa0864820 AT2G05100.1 84.043 94 15 0 4 97 172 265 4.06e-54 169
Msa0864820 AT1G29930.1 85.057 87 13 0 11 97 181 267 9.31e-49 155
Msa0864820 AT1G29920.1 85.057 87 13 0 11 97 181 267 9.93e-49 155
Msa0864820 AT1G29910.1 85.057 87 13 0 11 97 181 267 9.93e-49 155
Msa0864820 AT2G34430.1 85.057 87 13 0 11 97 180 266 2.65e-48 154
Msa0864820 AT2G34420.1 85.057 87 13 0 11 97 179 265 3.21e-48 154
Msa0864820 AT5G54270.1 80.000 85 15 2 13 96 181 264 4.54e-40 133
Msa0864820 AT2G05100.2 83.333 66 11 0 4 69 172 237 2.86e-31 112
Msa0864820 AT4G10340.1 69.118 68 21 0 18 85 198 265 7.84e-27 99.8
Msa0864820 AT1G76570.1 60.494 81 22 2 15 85 240 320 6.91e-25 95.5
Msa0864820 AT1G61520.2 58.571 70 28 1 18 86 142 211 7.50e-23 88.2
Msa0864820 AT1G61520.3 59.420 69 27 1 18 85 197 265 1.35e-22 88.6
Msa0864820 AT1G61520.1 59.420 69 27 1 18 85 197 265 1.35e-22 88.6
Msa0864820 AT3G54890.1 59.091 66 26 1 21 85 167 232 1.53e-19 80.1
Msa0864820 AT1G45474.2 57.353 68 28 1 15 81 175 242 2.78e-19 79.3
Msa0864820 AT1G45474.1 57.353 68 28 1 15 81 175 242 2.78e-19 79.3
Msa0864820 AT5G01530.1 53.731 67 30 1 20 85 216 282 2.87e-17 74.7
Msa0864820 AT3G08940.2 53.731 67 30 1 20 85 213 279 1.95e-16 72.4
Msa0864820 AT5G28450.1 52.174 69 31 2 15 81 93 161 4.49e-16 69.7
Msa0864820 AT3G61470.1 52.941 68 30 2 16 81 178 245 3.43e-15 68.6
Msa0864820 AT3G47470.1 53.846 65 26 1 21 85 185 245 5.92e-15 67.8
Msa0864820 AT2G40100.1 55.738 61 24 1 17 74 211 271 2.98e-13 63.5

Find 41 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTCAAGCCATTGTTAC+TGG 0.264682 5_4:+65407434 Msa0864820:CDS
GTCTTGGCGTTCTCATTGTC+CGG 0.330962 5_4:-65407540 None:intergenic
TTGGCTATGTTCTCCATGTT+TGG 0.341425 5_4:+65407407 Msa0864820:CDS
TTCAACTCTGCGAATGCATC+AGG 0.344835 5_4:-65407359 None:intergenic
GCCCATGCGTTGTTGGCGAC+AGG 0.394359 5_4:-65407497 None:intergenic
TCTTGGCGTTCTCATTGTCC+GGG 0.416065 5_4:-65407539 None:intergenic
TGGTCGTAAAGGTTCTGAAC+AGG 0.417502 5_4:-65407464 None:intergenic
GGTGGTGCCTTTGACCCTCT+TGG 0.419230 5_4:+65407323 Msa0864820:CDS
AGCATATGCCCATGCGTTGT+TGG 0.419884 5_4:-65407504 None:intergenic
TGATGCATTCGCAGAGTTGA+AGG 0.448661 5_4:+65407361 Msa0864820:CDS
ACCCTGTCGCCAACAACGCA+TGG 0.473833 5_4:+65407495 Msa0864820:CDS
AAGGCACCACCAGGGTATAG+TGG 0.492859 5_4:-65407311 None:intergenic
CAAGCCATTGTTACTGGCAA+GGG 0.504441 5_4:+65407440 Msa0864820:CDS
GGTCAGCAACATGGTCGTAA+AGG 0.529520 5_4:-65407475 None:intergenic
CCCATGCGTTGTTGGCGACA+GGG 0.536409 5_4:-65407496 None:intergenic
CCCTGTCGCCAACAACGCAT+GGG 0.536908 5_4:+65407496 Msa0864820:CDS
AGCAAGACCAAGAGGGTCAA+AGG 0.536924 5_4:-65407330 None:intergenic
TCAAGCCATTGTTACTGGCA+AGG 0.539300 5_4:+65407439 Msa0864820:CDS
AGAGGGTCAAAGGCACCACC+AGG 0.542069 5_4:-65407320 None:intergenic
CAGAGTTGTGGAGGACCACT+TGG 0.557714 5_4:+65407275 Msa0864820:CDS
GGAACTCAAGAACGGCCGAT+TGG 0.563130 5_4:+65407388 Msa0864820:CDS
TGTTGAAGGCTACAGAGTTG+TGG 0.567620 5_4:+65407263 Msa0864820:intron
ACATGGAGAACATAGCCAAT+CGG 0.576833 5_4:-65407403 None:intergenic
AGGCACCACCAGGGTATAGT+GGG 0.590141 5_4:-65407310 None:intergenic
TGGCGACAGGGTCAGCAACA+TGG 0.597357 5_4:-65407484 None:intergenic
AGGGCCCTTGCCAGTAACAA+TGG 0.597695 5_4:-65407444 None:intergenic
TATGCTACTAACTTCGTCCC+CGG 0.620877 5_4:+65407521 Msa0864820:CDS
TGTGGAGGACCACTTGGTGA+AGG 0.624859 5_4:+65407281 Msa0864820:CDS
GGGTCTAGTCCTTCACCAAG+TGG 0.625944 5_4:-65407290 None:intergenic
TCAACTCTGCGAATGCATCA+GGG 0.627212 5_4:-65407358 None:intergenic
GGGTCATCAGCAAGACCAAG+AGG 0.629020 5_4:-65407338 None:intergenic
GGTCGTAAAGGTTCTGAACA+GGG 0.631913 5_4:-65407463 None:intergenic
ATTCGCAGAGTTGAAGGTCA+AGG 0.644022 5_4:+65407367 Msa0864820:CDS
AAGGTCAAGGAACTCAAGAA+CGG 0.645041 5_4:+65407380 Msa0864820:CDS
CTTGGCGTTCTCATTGTCCG+GGG 0.655135 5_4:-65407538 None:intergenic
TGAAGGCTACAGAGTTGTGG+AGG 0.665432 5_4:+65407266 Msa0864820:intron
GGACTAGACCCACTATACCC+TGG 0.675418 5_4:+65407302 Msa0864820:CDS
GGTCATCAGCAAGACCAAGA+GGG 0.676366 5_4:-65407337 None:intergenic
GAGGGTCAAAGGCACCACCA+GGG 0.717882 5_4:-65407319 None:intergenic
TTGAACAAAGAAACCAAACA+TGG 0.730913 5_4:-65407420 None:intergenic
CTAGACCCACTATACCCTGG+TGG 0.775578 5_4:+65407305 Msa0864820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATAGTAAATTAACAT+AGG + chr5_4:65405925-65405944 Msa0864820:intron 10.0%
!! TTAAAATAGTAAATTAACAT+AGG + chr5_4:65405925-65405944 Msa0864820:intron 10.0%
!!! ATATTATTTTTTTCATTTTC+AGG + chr5_4:65406452-65406471 Msa0864820:intron 10.0%
!!! TATTATTTTTTTCATTTTCA+GGG + chr5_4:65406453-65406472 Msa0864820:intron 10.0%
!! NNNNNNNNNNAGAAAAAAGA+TGG - chr5_4:65407078-65407097 None:intergenic 10.0%
!! TTAAAATAGTAAATTAACAT+AGG + chr5_4:65405925-65405944 Msa0864820:intron 10.0%
!! TTAAAATAGTAAATTAACAT+AGG + chr5_4:65405925-65405944 Msa0864820:intron 10.0%
!!! ATATTATTTTTTTCATTTTC+AGG + chr5_4:65406452-65406471 Msa0864820:intron 10.0%
!!! TATTATTTTTTTCATTTTCA+GGG + chr5_4:65406453-65406472 Msa0864820:intron 10.0%
!! NNNNNNNNNNAGAAAAAAGA+TGG - chr5_4:65407078-65407097 None:intergenic 10.0%
!!! ATAAAATTGTCAACATTTTT+TGG - chr5_4:65406938-65406957 None:intergenic 15.0%
!! TTATAATTATTAATTGCTAG+TGG + chr5_4:65406954-65406973 Msa0864820:intron 15.0%
!!! ATAAAATTGTCAACATTTTT+TGG - chr5_4:65406938-65406957 None:intergenic 15.0%
!! TTATAATTATTAATTGCTAG+TGG + chr5_4:65406954-65406973 Msa0864820:intron 15.0%
!!! AATTTAATTTAACCCTGATT+TGG - chr5_4:65405727-65405746 None:intergenic 20.0%
!!! TAATATATGATGTTGTTTGA+AGG - chr5_4:65406192-65406211 None:intergenic 20.0%
!!! ATGTTTTTCTACTTTTGAAT+CGG + chr5_4:65406347-65406366 Msa0864820:intron 20.0%
!! CAATTCAACATAAAAGAATT+TGG - chr5_4:65406376-65406395 None:intergenic 20.0%
!!! TTTTGATTTAACACAATACA+AGG + chr5_4:65406589-65406608 Msa0864820:intron 20.0%
!!! CAGTTGTAATTTTCATTATA+TGG - chr5_4:65406639-65406658 None:intergenic 20.0%
!!! CTCATTTTTATCATTTCTAT+TGG + chr5_4:65406880-65406899 Msa0864820:intron 20.0%
!! GGATAATAAATTTAACAAGT+GGG - chr5_4:65406985-65407004 None:intergenic 20.0%
!! AGGATAATAAATTTAACAAG+TGG - chr5_4:65406986-65407005 None:intergenic 20.0%
!!! AATTTAATTTAACCCTGATT+TGG - chr5_4:65405727-65405746 None:intergenic 20.0%
!!! TAATATATGATGTTGTTTGA+AGG - chr5_4:65406192-65406211 None:intergenic 20.0%
!!! ATGTTTTTCTACTTTTGAAT+CGG + chr5_4:65406347-65406366 Msa0864820:intron 20.0%
!! CAATTCAACATAAAAGAATT+TGG - chr5_4:65406376-65406395 None:intergenic 20.0%
!!! TTTTGATTTAACACAATACA+AGG + chr5_4:65406589-65406608 Msa0864820:intron 20.0%
!!! CAGTTGTAATTTTCATTATA+TGG - chr5_4:65406639-65406658 None:intergenic 20.0%
!!! CTCATTTTTATCATTTCTAT+TGG + chr5_4:65406880-65406899 Msa0864820:intron 20.0%
!! GGATAATAAATTTAACAAGT+GGG - chr5_4:65406985-65407004 None:intergenic 20.0%
!! AGGATAATAAATTTAACAAG+TGG - chr5_4:65406986-65407005 None:intergenic 20.0%
! AGGGTTAAATTAAATTGTGA+TGG + chr5_4:65405731-65405750 Msa0864820:intron 25.0%
! TTGTAAACTGCCAAAATTTA+CGG - chr5_4:65405759-65405778 None:intergenic 25.0%
! TTAAATTAAGGGATTGTTTG+TGG + chr5_4:65405840-65405859 Msa0864820:intron 25.0%
! ATGACGAAAATTGTTAATAG+TGG - chr5_4:65405869-65405888 None:intergenic 25.0%
! TGGAATGAATATATATTGTG+AGG - chr5_4:65406145-65406164 None:intergenic 25.0%
!! TGAAATTGTATGAGTTGAAA+TGG - chr5_4:65406165-65406184 None:intergenic 25.0%
!!! TGTTTCTAGTAATGAATTTG+TGG + chr5_4:65406260-65406279 Msa0864820:intron 25.0%
! AACTGCAATTAATGTTGTAA+GGG + chr5_4:65406654-65406673 Msa0864820:intron 25.0%
!! ATCGACTTACAAAGAATAAT+TGG + chr5_4:65406728-65406747 Msa0864820:intron 25.0%
! AAGAGTTATGTTAGAGATAT+AGG + chr5_4:65406774-65406793 Msa0864820:intron 25.0%
!! GATAGTTATTAGTTTGATGT+TGG + chr5_4:65406808-65406827 Msa0864820:intron 25.0%
! TTATCATTTCTATTGGAACA+TGG + chr5_4:65406887-65406906 Msa0864820:intron 25.0%
! CATTAAGTGCAATAGAAAAA+AGG - chr5_4:65407006-65407025 None:intergenic 25.0%
! ATGGACAATTTGCATTTAAA+GGG - chr5_4:65407059-65407078 None:intergenic 25.0%
! AGGGTTAAATTAAATTGTGA+TGG + chr5_4:65405731-65405750 Msa0864820:intron 25.0%
! TTGTAAACTGCCAAAATTTA+CGG - chr5_4:65405759-65405778 None:intergenic 25.0%
! TTAAATTAAGGGATTGTTTG+TGG + chr5_4:65405840-65405859 Msa0864820:intron 25.0%
! ATGACGAAAATTGTTAATAG+TGG - chr5_4:65405869-65405888 None:intergenic 25.0%
! TGGAATGAATATATATTGTG+AGG - chr5_4:65406145-65406164 None:intergenic 25.0%
!! TGAAATTGTATGAGTTGAAA+TGG - chr5_4:65406165-65406184 None:intergenic 25.0%
!!! TGTTTCTAGTAATGAATTTG+TGG + chr5_4:65406260-65406279 Msa0864820:intron 25.0%
! AACTGCAATTAATGTTGTAA+GGG + chr5_4:65406654-65406673 Msa0864820:intron 25.0%
!! ATCGACTTACAAAGAATAAT+TGG + chr5_4:65406728-65406747 Msa0864820:intron 25.0%
! AAGAGTTATGTTAGAGATAT+AGG + chr5_4:65406774-65406793 Msa0864820:intron 25.0%
!! GATAGTTATTAGTTTGATGT+TGG + chr5_4:65406808-65406827 Msa0864820:intron 25.0%
! TTATCATTTCTATTGGAACA+TGG + chr5_4:65406887-65406906 Msa0864820:intron 25.0%
! CATTAAGTGCAATAGAAAAA+AGG - chr5_4:65407006-65407025 None:intergenic 25.0%
! ATGGACAATTTGCATTTAAA+GGG - chr5_4:65407059-65407078 None:intergenic 25.0%
TGCTATCATATTCAGAGAAA+TGG - chr5_4:65405604-65405623 None:intergenic 30.0%
GTTCATTGACCTTAAACTTA+AGG + chr5_4:65405681-65405700 Msa0864820:intron 30.0%
ATCCAAACACCTTAAGTTTA+AGG - chr5_4:65405693-65405712 None:intergenic 30.0%
! AAACTTAAGGTGTTTGGATT+TGG + chr5_4:65405694-65405713 Msa0864820:intron 30.0%
!! AAATTTTGGCAGTTTACAAG+CGG + chr5_4:65405760-65405779 Msa0864820:intron 30.0%
! GGCTTTTGTGGTTAAATTAA+GGG + chr5_4:65405829-65405848 Msa0864820:intron 30.0%
AGAAGAAAAGGCAATAACTT+AGG + chr5_4:65406020-65406039 Msa0864820:intron 30.0%
AAATGTGAGTGAATGAGATT+TGG - chr5_4:65406057-65406076 None:intergenic 30.0%
TGAGTATAAATAGAGAGTGA+GGG - chr5_4:65406107-65406126 None:intergenic 30.0%
! ATATGATGTTGTTTGAAGGA+GGG - chr5_4:65406188-65406207 None:intergenic 30.0%
! TATATGATGTTGTTTGAAGG+AGG - chr5_4:65406189-65406208 None:intergenic 30.0%
GTGCTAATAAGTAATAGTGA+TGG + chr5_4:65406313-65406332 Msa0864820:intron 30.0%
!!! TTTTTTCATTTTCAGGGCAA+AGG + chr5_4:65406459-65406478 Msa0864820:intron 30.0%
!! TTTTTCATTTTCAGGGCAAA+GGG + chr5_4:65406460-65406479 Msa0864820:intron 30.0%
ATACAAGGTCTTTGTCTTAA+CGG + chr5_4:65406604-65406623 Msa0864820:intron 30.0%
CAACTGCAATTAATGTTGTA+AGG + chr5_4:65406653-65406672 Msa0864820:intron 30.0%
GTTAGTTAGTGCCTATAAAT+AGG + chr5_4:65406837-65406856 Msa0864820:intron 30.0%
ACTACCTCAAACCTATTTAT+AGG - chr5_4:65406851-65406870 None:intergenic 30.0%
GATGGACAATTTGCATTTAA+AGG - chr5_4:65407060-65407079 None:intergenic 30.0%
TTGAACAAAGAAACCAAACA+TGG - chr5_4:65407423-65407442 None:intergenic 30.0%
TGCTATCATATTCAGAGAAA+TGG - chr5_4:65405604-65405623 None:intergenic 30.0%
GTTCATTGACCTTAAACTTA+AGG + chr5_4:65405681-65405700 Msa0864820:intron 30.0%
ATCCAAACACCTTAAGTTTA+AGG - chr5_4:65405693-65405712 None:intergenic 30.0%
! AAACTTAAGGTGTTTGGATT+TGG + chr5_4:65405694-65405713 Msa0864820:intron 30.0%
!! AAATTTTGGCAGTTTACAAG+CGG + chr5_4:65405760-65405779 Msa0864820:intron 30.0%
! GGCTTTTGTGGTTAAATTAA+GGG + chr5_4:65405829-65405848 Msa0864820:intron 30.0%
AGAAGAAAAGGCAATAACTT+AGG + chr5_4:65406020-65406039 Msa0864820:intron 30.0%
AAATGTGAGTGAATGAGATT+TGG - chr5_4:65406057-65406076 None:intergenic 30.0%
TGAGTATAAATAGAGAGTGA+GGG - chr5_4:65406107-65406126 None:intergenic 30.0%
! ATATGATGTTGTTTGAAGGA+GGG - chr5_4:65406188-65406207 None:intergenic 30.0%
! TATATGATGTTGTTTGAAGG+AGG - chr5_4:65406189-65406208 None:intergenic 30.0%
GTGCTAATAAGTAATAGTGA+TGG + chr5_4:65406313-65406332 Msa0864820:intron 30.0%
!!! TTTTTTCATTTTCAGGGCAA+AGG + chr5_4:65406459-65406478 Msa0864820:intron 30.0%
!! TTTTTCATTTTCAGGGCAAA+GGG + chr5_4:65406460-65406479 Msa0864820:intron 30.0%
ATACAAGGTCTTTGTCTTAA+CGG + chr5_4:65406604-65406623 Msa0864820:intron 30.0%
CAACTGCAATTAATGTTGTA+AGG + chr5_4:65406653-65406672 Msa0864820:intron 30.0%
GTTAGTTAGTGCCTATAAAT+AGG + chr5_4:65406837-65406856 Msa0864820:intron 30.0%
ACTACCTCAAACCTATTTAT+AGG - chr5_4:65406851-65406870 None:intergenic 30.0%
GATGGACAATTTGCATTTAA+AGG - chr5_4:65407060-65407079 None:intergenic 30.0%
TTGAACAAAGAAACCAAACA+TGG - chr5_4:65407423-65407442 None:intergenic 30.0%
! GACCTTAAACTTAAGGTGTT+TGG + chr5_4:65405688-65405707 Msa0864820:intron 35.0%
! CTCAAACGGAGATTTTGTAT+CGG + chr5_4:65405808-65405827 Msa0864820:intron 35.0%
!!! AGATTTTGTATCGGCTTTTG+TGG + chr5_4:65405817-65405836 Msa0864820:intron 35.0%
! CGGCTTTTGTGGTTAAATTA+AGG + chr5_4:65405828-65405847 Msa0864820:intron 35.0%
TATACTTGAGCGAGAAGAAA+AGG + chr5_4:65406008-65406027 Msa0864820:intron 35.0%
TATAAATAGAGAGTGAGGGT+TGG - chr5_4:65406103-65406122 None:intergenic 35.0%
GTGAGTATAAATAGAGAGTG+AGG - chr5_4:65406108-65406127 None:intergenic 35.0%
ACCTATCAAAGAATTGAACG+AGG - chr5_4:65406218-65406237 None:intergenic 35.0%
CTAGACGGTAATTGTTATGA+TGG + chr5_4:65406491-65406510 Msa0864820:intron 35.0%
CTAGAAACTCCAAGAATGAA+TGG + chr5_4:65406700-65406719 Msa0864820:intron 35.0%
CGATATACTCCATTCATTCT+TGG - chr5_4:65406712-65406731 None:intergenic 35.0%
AGTGCCTATAAATAGGTTTG+AGG + chr5_4:65406844-65406863 Msa0864820:intron 35.0%
TTTGTTCAAGCCATTGTTAC+TGG + chr5_4:65407434-65407453 Msa0864820:CDS 35.0%
! GACCTTAAACTTAAGGTGTT+TGG + chr5_4:65405688-65405707 Msa0864820:intron 35.0%
! CTCAAACGGAGATTTTGTAT+CGG + chr5_4:65405808-65405827 Msa0864820:intron 35.0%
!!! AGATTTTGTATCGGCTTTTG+TGG + chr5_4:65405817-65405836 Msa0864820:intron 35.0%
! CGGCTTTTGTGGTTAAATTA+AGG + chr5_4:65405828-65405847 Msa0864820:intron 35.0%
TATACTTGAGCGAGAAGAAA+AGG + chr5_4:65406008-65406027 Msa0864820:intron 35.0%
TATAAATAGAGAGTGAGGGT+TGG - chr5_4:65406103-65406122 None:intergenic 35.0%
GTGAGTATAAATAGAGAGTG+AGG - chr5_4:65406108-65406127 None:intergenic 35.0%
ACCTATCAAAGAATTGAACG+AGG - chr5_4:65406218-65406237 None:intergenic 35.0%
CTAGACGGTAATTGTTATGA+TGG + chr5_4:65406491-65406510 Msa0864820:intron 35.0%
CTAGAAACTCCAAGAATGAA+TGG + chr5_4:65406700-65406719 Msa0864820:intron 35.0%
CGATATACTCCATTCATTCT+TGG - chr5_4:65406712-65406731 None:intergenic 35.0%
AGTGCCTATAAATAGGTTTG+AGG + chr5_4:65406844-65406863 Msa0864820:intron 35.0%
TTTGTTCAAGCCATTGTTAC+TGG + chr5_4:65407434-65407453 Msa0864820:CDS 35.0%
GACTACTATGTCATCCTACT+TGG + chr5_4:65405646-65405665 Msa0864820:intron 40.0%
! CTTAAGGTGTTTGGATTTGG+TGG + chr5_4:65405697-65405716 Msa0864820:intron 40.0%
! ATTTGGTGGCTTACCAAATC+AGG + chr5_4:65405711-65405730 Msa0864820:intron 40.0%
! TTTGGTGGCTTACCAAATCA+GGG + chr5_4:65405712-65405731 Msa0864820:intron 40.0%
!!! TGTGATGGTGCCGTAAATTT+TGG + chr5_4:65405746-65405765 Msa0864820:intron 40.0%
CAAAATCTCCGTTTGAGTCT+CGG - chr5_4:65405805-65405824 None:intergenic 40.0%
! TTGTGAGGTGTTCGAAAGAA+GGG - chr5_4:65406130-65406149 None:intergenic 40.0%
! ATTGTGAGGTGTTCGAAAGA+AGG - chr5_4:65406131-65406150 None:intergenic 40.0%
GCCTCGTTCAATTCTTTGAT+AGG + chr5_4:65406214-65406233 Msa0864820:intron 40.0%
CAAAGGGTGAAGATACTAGA+CGG + chr5_4:65406476-65406495 Msa0864820:intron 40.0%
GGTAATTGTTATGATGGCAC+TGG + chr5_4:65406497-65406516 Msa0864820:intron 40.0%
GTCGTCAATTAGCAATCGAT+TGG - chr5_4:65406541-65406560 None:intergenic 40.0%
AATGTTGTAAGGGACTTTGC+AGG + chr5_4:65406664-65406683 Msa0864820:intron 40.0%
AAGGTCAAGGAACTCAAGAA+CGG + chr5_4:65407380-65407399 Msa0864820:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG - chr5_4:65407406-65407425 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG + chr5_4:65407407-65407426 Msa0864820:CDS 40.0%
GACTACTATGTCATCCTACT+TGG + chr5_4:65405646-65405665 Msa0864820:intron 40.0%
! CTTAAGGTGTTTGGATTTGG+TGG + chr5_4:65405697-65405716 Msa0864820:intron 40.0%
! ATTTGGTGGCTTACCAAATC+AGG + chr5_4:65405711-65405730 Msa0864820:intron 40.0%
! TTTGGTGGCTTACCAAATCA+GGG + chr5_4:65405712-65405731 Msa0864820:intron 40.0%
!!! TGTGATGGTGCCGTAAATTT+TGG + chr5_4:65405746-65405765 Msa0864820:intron 40.0%
CAAAATCTCCGTTTGAGTCT+CGG - chr5_4:65405805-65405824 None:intergenic 40.0%
! TTGTGAGGTGTTCGAAAGAA+GGG - chr5_4:65406130-65406149 None:intergenic 40.0%
! ATTGTGAGGTGTTCGAAAGA+AGG - chr5_4:65406131-65406150 None:intergenic 40.0%
GCCTCGTTCAATTCTTTGAT+AGG + chr5_4:65406214-65406233 Msa0864820:intron 40.0%
CAAAGGGTGAAGATACTAGA+CGG + chr5_4:65406476-65406495 Msa0864820:intron 40.0%
GGTAATTGTTATGATGGCAC+TGG + chr5_4:65406497-65406516 Msa0864820:intron 40.0%
GTCGTCAATTAGCAATCGAT+TGG - chr5_4:65406541-65406560 None:intergenic 40.0%
AATGTTGTAAGGGACTTTGC+AGG + chr5_4:65406664-65406683 Msa0864820:intron 40.0%
AAGGTCAAGGAACTCAAGAA+CGG + chr5_4:65407380-65407399 Msa0864820:CDS 40.0%
ACATGGAGAACATAGCCAAT+CGG - chr5_4:65407406-65407425 None:intergenic 40.0%
TTGGCTATGTTCTCCATGTT+TGG + chr5_4:65407407-65407426 Msa0864820:CDS 40.0%
ACTACAAGTGAGTGCCAAGT+AGG - chr5_4:65405663-65405682 None:intergenic 45.0%
! TTTTGGCAGTTTACAAGCGG+TGG + chr5_4:65405763-65405782 Msa0864820:intron 45.0%
AGTCTGATCCGAGACTCAAA+CGG + chr5_4:65405794-65405813 Msa0864820:intron 45.0%
! GAATGAGATTTGGTCACGCT+AGG - chr5_4:65406047-65406066 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG - chr5_4:65407201-65407220 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG - chr5_4:65407213-65407232 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG + chr5_4:65407215-65407234 Msa0864820:intron 45.0%
TTCTTGCAATCTGGCTACAC+AGG + chr5_4:65407224-65407243 Msa0864820:intron 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG + chr5_4:65407249-65407268 Msa0864820:intron 45.0%
TGTTGAAGGCTACAGAGTTG+TGG + chr5_4:65407263-65407282 Msa0864820:intron 45.0%
TCAACTCTGCGAATGCATCA+GGG - chr5_4:65407361-65407380 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG - chr5_4:65407362-65407381 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG + chr5_4:65407361-65407380 Msa0864820:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG + chr5_4:65407367-65407386 Msa0864820:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG + chr5_4:65407439-65407458 Msa0864820:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG + chr5_4:65407440-65407459 Msa0864820:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG - chr5_4:65407466-65407485 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG - chr5_4:65407467-65407486 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG + chr5_4:65407521-65407540 Msa0864820:CDS 45.0%
ACTACAAGTGAGTGCCAAGT+AGG - chr5_4:65405663-65405682 None:intergenic 45.0%
! TTTTGGCAGTTTACAAGCGG+TGG + chr5_4:65405763-65405782 Msa0864820:intron 45.0%
AGTCTGATCCGAGACTCAAA+CGG + chr5_4:65405794-65405813 Msa0864820:intron 45.0%
! GAATGAGATTTGGTCACGCT+AGG - chr5_4:65406047-65406066 None:intergenic 45.0%
TCTGAGCATGGATCAGGTTT+GGG - chr5_4:65407201-65407220 None:intergenic 45.0%
! TTGCAAGAATGCTCTGAGCA+TGG - chr5_4:65407213-65407232 None:intergenic 45.0%
! CTCAGAGCATTCTTGCAATC+TGG + chr5_4:65407215-65407234 Msa0864820:intron 45.0%
TTCTTGCAATCTGGCTACAC+AGG + chr5_4:65407224-65407243 Msa0864820:intron 45.0%
!! GTGCTCATGGGATTTGTTGA+AGG + chr5_4:65407249-65407268 Msa0864820:intron 45.0%
TGTTGAAGGCTACAGAGTTG+TGG + chr5_4:65407263-65407282 Msa0864820:intron 45.0%
TCAACTCTGCGAATGCATCA+GGG - chr5_4:65407361-65407380 None:intergenic 45.0%
TTCAACTCTGCGAATGCATC+AGG - chr5_4:65407362-65407381 None:intergenic 45.0%
TGATGCATTCGCAGAGTTGA+AGG + chr5_4:65407361-65407380 Msa0864820:CDS 45.0%
ATTCGCAGAGTTGAAGGTCA+AGG + chr5_4:65407367-65407386 Msa0864820:CDS 45.0%
TCAAGCCATTGTTACTGGCA+AGG + chr5_4:65407439-65407458 Msa0864820:CDS 45.0%
CAAGCCATTGTTACTGGCAA+GGG + chr5_4:65407440-65407459 Msa0864820:CDS 45.0%
!! GGTCGTAAAGGTTCTGAACA+GGG - chr5_4:65407466-65407485 None:intergenic 45.0%
!! TGGTCGTAAAGGTTCTGAAC+AGG - chr5_4:65407467-65407486 None:intergenic 45.0%
TATGCTACTAACTTCGTCCC+CGG + chr5_4:65407521-65407540 Msa0864820:CDS 45.0%
GCAGTTTACAAGCGGTGGTT+TGG + chr5_4:65405768-65405787 Msa0864820:intron 50.0%
CTCTGAGCATGGATCAGGTT+TGG - chr5_4:65407202-65407221 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG - chr5_4:65407207-65407226 None:intergenic 50.0%
GCTACACAGGTTGTGCTCAT+GGG + chr5_4:65407237-65407256 Msa0864820:intron 50.0%
TGAAGGCTACAGAGTTGTGG+AGG + chr5_4:65407266-65407285 Msa0864820:intron 50.0%
AGCAAGACCAAGAGGGTCAA+AGG - chr5_4:65407333-65407352 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG - chr5_4:65407340-65407359 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG - chr5_4:65407478-65407497 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG - chr5_4:65407507-65407526 None:intergenic 50.0%
GCAGTTTACAAGCGGTGGTT+TGG + chr5_4:65405768-65405787 Msa0864820:intron 50.0%
CTCTGAGCATGGATCAGGTT+TGG - chr5_4:65407202-65407221 None:intergenic 50.0%
! GAATGCTCTGAGCATGGATC+AGG - chr5_4:65407207-65407226 None:intergenic 50.0%
GCTACACAGGTTGTGCTCAT+GGG + chr5_4:65407237-65407256 Msa0864820:intron 50.0%
TGAAGGCTACAGAGTTGTGG+AGG + chr5_4:65407266-65407285 Msa0864820:intron 50.0%
AGCAAGACCAAGAGGGTCAA+AGG - chr5_4:65407333-65407352 None:intergenic 50.0%
GGTCATCAGCAAGACCAAGA+GGG - chr5_4:65407340-65407359 None:intergenic 50.0%
GGTCAGCAACATGGTCGTAA+AGG - chr5_4:65407478-65407497 None:intergenic 50.0%
AGCATATGCCCATGCGTTGT+TGG - chr5_4:65407507-65407526 None:intergenic 50.0%
GGCTACACAGGTTGTGCTCA+TGG + chr5_4:65407236-65407255 Msa0864820:intron 55.0%
CAGAGTTGTGGAGGACCACT+TGG + chr5_4:65407275-65407294 Msa0864820:CDS 55.0%
! TGTGGAGGACCACTTGGTGA+AGG + chr5_4:65407281-65407300 Msa0864820:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG - chr5_4:65407293-65407312 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG + chr5_4:65407302-65407321 Msa0864820:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG + chr5_4:65407305-65407324 Msa0864820:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG - chr5_4:65407313-65407332 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG - chr5_4:65407314-65407333 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG - chr5_4:65407341-65407360 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG + chr5_4:65407388-65407407 Msa0864820:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG - chr5_4:65407447-65407466 None:intergenic 55.0%
GGCTACACAGGTTGTGCTCA+TGG + chr5_4:65407236-65407255 Msa0864820:intron 55.0%
CAGAGTTGTGGAGGACCACT+TGG + chr5_4:65407275-65407294 Msa0864820:CDS 55.0%
! TGTGGAGGACCACTTGGTGA+AGG + chr5_4:65407281-65407300 Msa0864820:CDS 55.0%
GGGTCTAGTCCTTCACCAAG+TGG - chr5_4:65407293-65407312 None:intergenic 55.0%
GGACTAGACCCACTATACCC+TGG + chr5_4:65407302-65407321 Msa0864820:CDS 55.0%
CTAGACCCACTATACCCTGG+TGG + chr5_4:65407305-65407324 Msa0864820:CDS 55.0%
AGGCACCACCAGGGTATAGT+GGG - chr5_4:65407313-65407332 None:intergenic 55.0%
! AAGGCACCACCAGGGTATAG+TGG - chr5_4:65407314-65407333 None:intergenic 55.0%
GGGTCATCAGCAAGACCAAG+AGG - chr5_4:65407341-65407360 None:intergenic 55.0%
GGAACTCAAGAACGGCCGAT+TGG + chr5_4:65407388-65407407 Msa0864820:CDS 55.0%
AGGGCCCTTGCCAGTAACAA+TGG - chr5_4:65407447-65407466 None:intergenic 55.0%
!! GAGGGTCAAAGGCACCACCA+GGG - chr5_4:65407322-65407341 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG - chr5_4:65407323-65407342 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG + chr5_4:65407323-65407342 Msa0864820:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG - chr5_4:65407487-65407506 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG + chr5_4:65407495-65407514 Msa0864820:CDS 60.0%
CCCATGCGTTGTTGGCGACA+GGG - chr5_4:65407499-65407518 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG + chr5_4:65407496-65407515 Msa0864820:CDS 60.0%
!! GAGGGTCAAAGGCACCACCA+GGG - chr5_4:65407322-65407341 None:intergenic 60.0%
!! AGAGGGTCAAAGGCACCACC+AGG - chr5_4:65407323-65407342 None:intergenic 60.0%
GGTGGTGCCTTTGACCCTCT+TGG + chr5_4:65407323-65407342 Msa0864820:CDS 60.0%
TGGCGACAGGGTCAGCAACA+TGG - chr5_4:65407487-65407506 None:intergenic 60.0%
ACCCTGTCGCCAACAACGCA+TGG + chr5_4:65407495-65407514 Msa0864820:CDS 60.0%
CCCATGCGTTGTTGGCGACA+GGG - chr5_4:65407499-65407518 None:intergenic 60.0%
CCCTGTCGCCAACAACGCAT+GGG + chr5_4:65407496-65407515 Msa0864820:CDS 60.0%
GCCCATGCGTTGTTGGCGAC+AGG - chr5_4:65407500-65407519 None:intergenic 65.0%
GCCCATGCGTTGTTGGCGAC+AGG - chr5_4:65407500-65407519 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 65405554 65407550 65405554 ID=Msa0864820;Name=Msa0864820
chr5_4 mRNA 65405554 65407550 65405554 ID=Msa0864820-mRNA-1;Parent=Msa0864820;Name=Msa0864820-mRNA-1;_AED=0.14;_eAED=0.21;_QI=0|0|0|0.33|1|1|3|0|97
chr5_4 exon 65405554 65405559 65405554 ID=Msa0864820-mRNA-1:exon:20646;Parent=Msa0864820-mRNA-1
chr5_4 exon 65406474 65406481 65406474 ID=Msa0864820-mRNA-1:exon:20647;Parent=Msa0864820-mRNA-1
chr5_4 exon 65407271 65407550 65407271 ID=Msa0864820-mRNA-1:exon:20648;Parent=Msa0864820-mRNA-1
chr5_4 CDS 65405554 65405559 65405554 ID=Msa0864820-mRNA-1:cds;Parent=Msa0864820-mRNA-1
chr5_4 CDS 65406474 65406481 65406474 ID=Msa0864820-mRNA-1:cds;Parent=Msa0864820-mRNA-1
chr5_4 CDS 65407271 65407550 65407271 ID=Msa0864820-mRNA-1:cds;Parent=Msa0864820-mRNA-1
Gene Sequence

>Msa0864820

ATGGAAGGCAAAGGGCTACAGAGTTGTGGAGGACCACTTGGTGAAGGACTAGACCCACTATACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTCGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGCCGATTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTTACTGGCAAGGGCCCTGTTCAGAACCTTTACGACCATGTTGCTGACCCTGTCGCCAACAACGCATGGGCATATGCTACTAACTTCGTCCCCGGACAATGA

Protein sequence

>Msa0864820

MEGKGLQSCGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANNAWAYATNFVPGQ*