Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223830 | XP_003597533.2 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223830 | sp|Q8LDW8|GLO2D_ARATH | 71.084 | 332 | 92 | 3 | 35 | 365 | 1 | 329 | 7.66e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223830 | G7IS04 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0223830 | 0.804202 | 2.418696e-49 | -8.615850e-47 |
| Msa0002110 | Msa0223830 | 0.807498 | 4.907878e-50 | -8.615850e-47 |
| Msa0095230 | Msa0223830 | 0.804145 | 2.485787e-49 | -8.615850e-47 |
| Msa0095810 | Msa0223830 | 0.803134 | 4.029135e-49 | -8.615850e-47 |
| Msa0111110 | Msa0223830 | 0.804018 | 2.641415e-49 | -8.615850e-47 |
| Msa0113370 | Msa0223830 | 0.801886 | 7.286068e-49 | -8.615850e-47 |
| Msa0223830 | Msa0265010 | 0.836432 | 9.391654e-57 | -8.615850e-47 |
| Msa0223830 | Msa0268210 | 0.819719 | 1.002028e-52 | -8.615850e-47 |
| Msa0223830 | Msa0268450 | 0.816634 | 4.998670e-52 | -8.615850e-47 |
| Msa0223830 | Msa0268570 | 0.803775 | 2.968022e-49 | -8.615850e-47 |
| Msa0223830 | Msa0268670 | 0.822632 | 2.135112e-53 | -8.615850e-47 |
| Msa0223830 | Msa0268750 | 0.803048 | 4.198467e-49 | -8.615850e-47 |
| Msa0223830 | Msa0268880 | 0.830322 | 3.134323e-55 | -8.615850e-47 |
| Msa0223830 | Msa0269090 | 0.808018 | 3.806177e-50 | -8.615850e-47 |
| Msa0223830 | Msa0310720 | 0.829648 | 4.575708e-55 | -8.615850e-47 |
| Msa0223830 | Msa0310730 | 0.828291 | 9.756762e-55 | -8.615850e-47 |
| Msa0223830 | Msa0380400 | 0.806317 | 8.723705e-50 | -8.615850e-47 |
| Msa0223830 | Msa0476170 | 0.808626 | 2.824360e-50 | -8.615850e-47 |
| Msa0223830 | Msa0576080 | 0.809510 | 1.826320e-50 | -8.615850e-47 |
| Msa0223830 | Msa0576120 | 0.840831 | 6.860232e-58 | -8.615850e-47 |
| Msa0223830 | Msa0582770 | 0.801265 | 9.768014e-49 | -8.615850e-47 |
| Msa0223830 | Msa0582860 | 0.809615 | 1.733945e-50 | -8.615850e-47 |
| Msa0223830 | Msa0582870 | 0.802049 | 6.744675e-49 | -8.615850e-47 |
| Msa0223830 | Msa0606640 | 0.853092 | 3.002873e-61 | -8.615850e-47 |
| Msa0223830 | Msa0660960 | 0.999126 | 1.552027e-291 | -8.615850e-47 |
| Msa0223830 | Msa0686860 | 0.814486 | 1.503592e-51 | -8.615850e-47 |
| Msa0223830 | Msa0686950 | 0.839480 | 1.545510e-57 | -8.615850e-47 |
| Msa0223830 | Msa0687440 | -0.802037 | 6.783295e-49 | -8.615850e-47 |
| Msa0223830 | Msa0788450 | 0.807309 | 5.382173e-50 | -8.615850e-47 |
| Msa0223830 | Msa0825570 | 0.807793 | 4.249182e-50 | -8.615850e-47 |
| Msa0223830 | Msa0826540 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0223830 | Msa0827520 | 0.838068 | 3.581852e-57 | -8.615850e-47 |
| Msa0223830 | Msa0833950 | 0.803158 | 3.983465e-49 | -8.615850e-47 |
| Msa0223830 | Msa0864820 | 0.822866 | 1.883293e-53 | -8.615850e-47 |
| Msa0223830 | Msa0881530 | 0.816833 | 4.509313e-52 | -8.615850e-47 |
| Msa0223830 | Msa0982090 | 0.816119 | 6.516233e-52 | -8.615850e-47 |
| Msa0223830 | Msa1085610 | 0.827059 | 1.928232e-54 | -8.615850e-47 |
| Msa0223830 | Msa1086200 | 0.805201 | 1.496702e-49 | -8.615850e-47 |
| Msa0223830 | Msa1086320 | 0.813302 | 2.741633e-51 | -8.615850e-47 |
| Msa0223830 | Msa1086490 | 0.821109 | 4.807675e-53 | -8.615850e-47 |
| Msa0223830 | Msa1086510 | 0.805849 | 1.094340e-49 | -8.615850e-47 |
| Msa0223830 | Msa1086670 | 0.829029 | 6.470774e-55 | -8.615850e-47 |
| Msa0223830 | Msa1086680 | 0.806555 | 7.771055e-50 | -8.615850e-47 |
| Msa0223830 | Msa1129480 | -0.800023 | 1.750171e-48 | -8.615850e-47 |
| Msa0223830 | Msa1342960 | 0.813655 | 2.293726e-51 | -8.615850e-47 |
| Msa0223830 | Msa1355090 | 0.802274 | 6.065074e-49 | -8.615850e-47 |
| Msa0223830 | Msa1365030 | 0.807631 | 4.600686e-50 | -8.615850e-47 |
| Msa0223830 | Msa1367400 | 0.812954 | 3.268439e-51 | -8.615850e-47 |
| Msa0223830 | Msa1376550 | 0.801415 | 9.101629e-49 | -8.615850e-47 |
| Msa0223830 | Msa1382380 | 0.814865 | 1.239300e-51 | -8.615850e-47 |
| Msa0223830 | Msa1388030 | 0.840642 | 7.688593e-58 | -8.615850e-47 |
| Msa0223830 | Msa1394270 | 0.800511 | 1.392969e-48 | -8.615850e-47 |
| Msa0223830 | Msa1462680 | 0.810967 | 8.858098e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223830 | MtrunA17_Chr2g0329571 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Msa0223830 | MtrunA17_Chr4g0033721 | 76.452 | 310 | 72 | 1 | 56 | 365 | 7 | 315 | 1.32e-176 | 493 |
| Msa0223830 | MtrunA17_Chr5g0428611 | 40.840 | 262 | 141 | 7 | 112 | 365 | 1 | 256 | 1.48e-57 | 187 |
| Msa0223830 | MtrunA17_Chr2g0313641 | 31.818 | 176 | 103 | 7 | 121 | 282 | 56 | 228 | 5.03e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223830 | AT1G06130.2 | 71.299 | 331 | 92 | 2 | 35 | 365 | 1 | 328 | 0.0 | 504 |
| Msa0223830 | AT1G06130.1 | 71.084 | 332 | 92 | 3 | 35 | 365 | 1 | 329 | 7.79e-179 | 499 |
| Msa0223830 | AT2G31350.2 | 71.299 | 331 | 87 | 4 | 35 | 365 | 1 | 323 | 2.45e-175 | 490 |
| Msa0223830 | AT2G31350.1 | 71.299 | 331 | 88 | 4 | 35 | 365 | 1 | 324 | 2.65e-175 | 490 |
| Msa0223830 | AT2G43430.1 | 67.879 | 330 | 104 | 2 | 37 | 365 | 3 | 331 | 1.92e-166 | 468 |
| Msa0223830 | AT2G43430.2 | 68.269 | 312 | 98 | 1 | 54 | 365 | 3 | 313 | 1.69e-160 | 452 |
| Msa0223830 | AT2G43430.3 | 70.035 | 287 | 85 | 1 | 79 | 365 | 1 | 286 | 5.79e-149 | 422 |
| Msa0223830 | AT2G31350.3 | 71.200 | 250 | 65 | 4 | 35 | 284 | 1 | 243 | 2.93e-127 | 365 |
| Msa0223830 | AT3G10850.1 | 39.695 | 262 | 144 | 7 | 112 | 365 | 1 | 256 | 1.82e-58 | 190 |
Find 124 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTACTTTCCGGGATC+TGG | 0.175790 | 2_1:-73486793 | Msa0223830:CDS |
| GTATATATGTTTATCATTCT+TGG | 0.226183 | 2_1:-73485165 | Msa0223830:three_prime_UTR |
| CCACATCAGCTTCTACTTTC+CGG | 0.270037 | 2_1:-73486800 | Msa0223830:CDS |
| CTGGAATGTTTAACGATTGC+CGG | 0.288512 | 2_1:+73485548 | None:intergenic |
| AAATAGAAAAGTATATAAAA+AGG | 0.306392 | 2_1:-73489186 | None:intergenic |
| TTTGAGTTCATTCTTGTTCT+CGG | 0.306933 | 2_1:-73485218 | Msa0223830:three_prime_UTR |
| CCGTATCAATATCATGTAAA+AGG | 0.307674 | 2_1:+73487932 | None:intergenic |
| TATCATTCTCATATTGCTAT+TGG | 0.314958 | 2_1:+73485405 | None:intergenic |
| AAGGAAAGAGAGAGAAGAAA+TGG | 0.315953 | 2_1:+73489060 | None:intergenic |
| CACATCAGCTTCTACTTTCC+GGG | 0.337719 | 2_1:-73486799 | Msa0223830:CDS |
| TTGAAGCTTTAGAAAGCATT+TGG | 0.357702 | 2_1:+73489033 | None:intergenic |
| GTAGAATTAAAAGCAAGATA+TGG | 0.359608 | 2_1:-73487787 | Msa0223830:CDS |
| CAACCAAACAGTAAAATTAG+TGG | 0.367910 | 2_1:-73489087 | Msa0223830:CDS |
| CTTATGGTCGAAGGCTTGTT+TGG | 0.372291 | 2_1:+73485322 | None:intergenic |
| CTGCAATGAGGAAGACATAT+TGG | 0.381228 | 2_1:+73488384 | None:intergenic |
| CAGTGTCGTGTCCGGGTCAA+TGG | 0.381653 | 2_1:+73485431 | None:intergenic |
| CATGTTGCATTACAGGTGAT+TGG | 0.382874 | 2_1:-73487029 | Msa0223830:intron |
| GATCGAAGTTCCTTGTTTCC+AGG | 0.387556 | 2_1:+73485810 | None:intergenic |
| TAGAATTAAAAGCAAGATAT+GGG | 0.393374 | 2_1:-73487786 | Msa0223830:CDS |
| CTACGTAAAACCAACACTTA+TGG | 0.405208 | 2_1:+73485306 | None:intergenic |
| TTTAGAAAAGGAATTCTGTA+TGG | 0.405567 | 2_1:-73488493 | Msa0223830:CDS |
| GCTTCTACTTTCCGGGATCT+GGG | 0.408664 | 2_1:-73486792 | Msa0223830:CDS |
| ACCGACAACAAAAGGATTCC+TGG | 0.413397 | 2_1:-73486999 | Msa0223830:CDS |
| AGCAGTAACTGTGGCTCTAT+TGG | 0.416104 | 2_1:-73485055 | Msa0223830:three_prime_UTR |
| AAACAAAGTTGCCTCACATT+AGG | 0.419544 | 2_1:+73488514 | None:intergenic |
| TTGAGTTCATTCTTGTTCTC+GGG | 0.423353 | 2_1:-73485217 | Msa0223830:three_prime_UTR |
| TCTGCATCATCTGCTGTGGC+TGG | 0.424261 | 2_1:+73485529 | None:intergenic |
| TTACAGATGCAATCTTCTCT+TGG | 0.426089 | 2_1:-73486017 | Msa0223830:intron |
| TTCCTCATTGCAGATTGAAT+TGG | 0.430159 | 2_1:-73488374 | Msa0223830:intron |
| TGAGAGCTGGGTTTAGTGTC+TGG | 0.445616 | 2_1:-73488537 | Msa0223830:CDS |
| CATATAAAACGCTGCGTGGA+GGG | 0.449951 | 2_1:-73488447 | Msa0223830:CDS |
| TCATGCGGCAAACTCTTTGA+AGG | 0.453311 | 2_1:-73486736 | Msa0223830:CDS |
| AGGAAAGAGAGAGAAGAAAT+GGG | 0.454889 | 2_1:+73489061 | None:intergenic |
| GGTGATAAGTGGATGTTTGC+TGG | 0.459231 | 2_1:-73486954 | Msa0223830:CDS |
| ATTGGTGTCAGTGTCGTGTC+CGG | 0.459621 | 2_1:+73485423 | None:intergenic |
| AGCAGATGATGCAGAAGCCC+TGG | 0.460161 | 2_1:-73485521 | Msa0223830:CDS |
| TGTATGTTTGCAGAATAATA+CGG | 0.466239 | 2_1:-73485853 | Msa0223830:intron |
| GTACATCCAACGCACAAATC+CGG | 0.468577 | 2_1:-73485567 | Msa0223830:CDS |
| GTGGCTTCCCTTCGAAGTAA+AGG | 0.472139 | 2_1:-73485774 | Msa0223830:CDS |
| GTTCAGCAACCGACAACAAA+AGG | 0.473223 | 2_1:-73487007 | Msa0223830:CDS |
| TTCATTGACCTACTCTATAC+AGG | 0.474441 | 2_1:+73485461 | None:intergenic |
| ACTTATCACCGTCATTCAAA+TGG | 0.477333 | 2_1:+73486967 | None:intergenic |
| TTCGCATTGAGGCTCGAACC+TGG | 0.481254 | 2_1:-73485828 | Msa0223830:CDS |
| TGAAGAAGAAGGGGTGGTGG+TGG | 0.492021 | 2_1:-73489136 | Msa0223830:CDS |
| TTGCTCAATGCATCTATGAC+AGG | 0.496375 | 2_1:+73487874 | None:intergenic |
| GATATTGATACGGGCACAGT+TGG | 0.506415 | 2_1:-73487922 | Msa0223830:CDS |
| TTAGAAAGCATTTGGAAGGA+AGG | 0.508637 | 2_1:+73489041 | None:intergenic |
| GATTCCGACCACACTGAAGA+TGG | 0.510448 | 2_1:-73485614 | Msa0223830:CDS |
| TTGCTTGTCGGATGATACCC+AGG | 0.511740 | 2_1:+73485503 | None:intergenic |
| TGTCAGTGTCGTGTCGGTGT+TGG | 0.513449 | 2_1:-73485365 | Msa0223830:three_prime_UTR |
| CAGTATATACTTGTATCGTC+TGG | 0.514843 | 2_1:+73485978 | None:intergenic |
| GTCGCTCACTTAGAGTGGCT+CGG | 0.516030 | 2_1:-73488420 | Msa0223830:CDS |
| TTGGTGTCAGTGTCGTGTCC+GGG | 0.518088 | 2_1:+73485424 | None:intergenic |
| AAATGTGTTGATGAAGAAGA+AGG | 0.521915 | 2_1:-73489147 | Msa0223830:exon |
| CATCGAGAGACAAATCTACA+AGG | 0.524234 | 2_1:+73485108 | None:intergenic |
| CGATTGCCGGATTTGTGCGT+TGG | 0.527139 | 2_1:+73485561 | None:intergenic |
| AAGGAACTTCGATCCTATGC+TGG | 0.529395 | 2_1:-73485801 | Msa0223830:CDS |
| AAGCATAAATATTCCACAGA+TGG | 0.536492 | 2_1:+73485274 | None:intergenic |
| TGTCCATTACTTGCACCTCA+TGG | 0.537197 | 2_1:+73486931 | None:intergenic |
| GGGCAAGCCTTTACTTCGAA+GGG | 0.545894 | 2_1:+73485767 | None:intergenic |
| TAAAGACTCCTGTATAGAGT+AGG | 0.546403 | 2_1:-73485469 | Msa0223830:three_prime_UTR |
| GGAAGCCACGTGGCCAGCAT+AGG | 0.547492 | 2_1:+73485788 | None:intergenic |
| TGGGCAAGCCTTTACTTCGA+AGG | 0.550848 | 2_1:+73485766 | None:intergenic |
| GGCTTCTGCATCATCTGCTG+TGG | 0.554650 | 2_1:+73485525 | None:intergenic |
| GGTATGCATAATTGTCACTC+AGG | 0.558560 | 2_1:+73487953 | None:intergenic |
| TTCAAATGGATATCAATGCC+AGG | 0.559408 | 2_1:+73486981 | None:intergenic |
| ACTCTTTGAAGGAACCCCTC+AGG | 0.563265 | 2_1:-73486725 | Msa0223830:CDS |
| TGATGAAGAAGAAGGGGTGG+TGG | 0.565711 | 2_1:-73489139 | Msa0223830:CDS |
| GACCACACTGAAGATGGAAA+AGG | 0.569691 | 2_1:-73485608 | Msa0223830:CDS |
| AATGTGTTGATGAAGAAGAA+GGG | 0.575161 | 2_1:-73489146 | Msa0223830:exon |
| GGGTATCATCCGACAAGCAA+AGG | 0.576116 | 2_1:-73485500 | Msa0223830:CDS |
| GGCTAGTCGCTCACTTAGAG+TGG | 0.577501 | 2_1:-73488425 | Msa0223830:CDS |
| AGGTAAAACCAACCTCCTGA+GGG | 0.580185 | 2_1:+73486710 | None:intergenic |
| CAGGTAAAACCAACCTCCTG+AGG | 0.581515 | 2_1:+73486709 | None:intergenic |
| GCGTTGGATGTACGAAGGAA+TGG | 0.582552 | 2_1:+73485577 | None:intergenic |
| CTTCTACTTTCCGGGATCTG+GGG | 0.582769 | 2_1:-73486791 | Msa0223830:CDS |
| ATATAAAACGCTGCGTGGAG+GGG | 0.583237 | 2_1:-73488446 | Msa0223830:CDS |
| AGCTTTAGAAAGCATTTGGA+AGG | 0.583539 | 2_1:+73489037 | None:intergenic |
| CCATATAAAACGCTGCGTGG+AGG | 0.583820 | 2_1:-73488448 | Msa0223830:CDS |
| TGCTTGTCGGATGATACCCA+GGG | 0.585286 | 2_1:+73485504 | None:intergenic |
| ATTTGAATGACGGTGATAAG+TGG | 0.585793 | 2_1:-73486965 | Msa0223830:CDS |
| GAGGCTCGAACCTGGAAACA+AGG | 0.587160 | 2_1:-73485820 | Msa0223830:CDS |
| AAAAGCAAGATATGGGGCAA+AGG | 0.588467 | 2_1:-73487779 | Msa0223830:intron |
| CACCAATTCAATCTGCAATG+AGG | 0.598023 | 2_1:+73488372 | None:intergenic |
| AAGCCTTCGACCATAAGTGT+TGG | 0.604404 | 2_1:-73485316 | Msa0223830:three_prime_UTR |
| CACCAGTGTGATCATGATGA+TGG | 0.604627 | 2_1:+73487815 | None:intergenic |
| ATGACAGGCGTAGCTTCAGA+AGG | 0.605200 | 2_1:+73487889 | None:intergenic |
| GCAGATGATGCAGAAGCCCT+GGG | 0.608833 | 2_1:-73485520 | Msa0223830:CDS |
| GAATTCTGTATGGATTTATG+CGG | 0.611448 | 2_1:-73488483 | Msa0223830:CDS |
| CCGGAAAGTAGAAGCTGATG+TGG | 0.611653 | 2_1:+73486800 | None:intergenic |
| ATTGATATCCATTTGAATGA+CGG | 0.612448 | 2_1:-73486975 | Msa0223830:CDS |
| ATGTGACCTCGAGTGTGACC+AGG | 0.616405 | 2_1:+73486906 | None:intergenic |
| ATCGAGAGACAAATCTACAA+GGG | 0.619946 | 2_1:+73485109 | None:intergenic |
| CTTTGAAGGAACCCCTCAGG+AGG | 0.623384 | 2_1:-73486722 | Msa0223830:intron |
| GCATAATTGTCACTCAGGCA+AGG | 0.623799 | 2_1:+73487958 | None:intergenic |
| AAACCAACACTTATGGTCGA+AGG | 0.626558 | 2_1:+73485313 | None:intergenic |
| CACATGTGTCAGTGTCGTGT+CGG | 0.630652 | 2_1:-73485371 | Msa0223830:three_prime_UTR |
| ATAATACGGACTTCGCATTG+AGG | 0.642456 | 2_1:-73485839 | Msa0223830:CDS |
| TTAGTGTCTGGCCTAATGTG+AGG | 0.647103 | 2_1:-73488525 | Msa0223830:CDS |
| CATCATCATGATCACACTGG+TGG | 0.648943 | 2_1:-73487814 | Msa0223830:CDS |
| TGGCCATGAGGTGCAAGTAA+TGG | 0.649042 | 2_1:-73486934 | Msa0223830:CDS |
| ATGTGTTGATGAAGAAGAAG+GGG | 0.649395 | 2_1:-73489145 | Msa0223830:exon |
| GACACACCTGGTCACACTCG+AGG | 0.650356 | 2_1:-73486912 | Msa0223830:intron |
| GTAGTTAATGAATCCATCTG+TGG | 0.650438 | 2_1:-73485287 | Msa0223830:three_prime_UTR |
| TGAACTATGAACCATTGACC+CGG | 0.652621 | 2_1:-73485442 | Msa0223830:three_prime_UTR |
| ACGCCATATAAAACGCTGCG+TGG | 0.653296 | 2_1:-73488451 | Msa0223830:CDS |
| TCGAAGTAAAGGCTTGCCCA+CGG | 0.654918 | 2_1:-73485763 | Msa0223830:intron |
| AGAATTAAAAGCAAGATATG+GGG | 0.659094 | 2_1:-73487785 | Msa0223830:CDS |
| ACTTTGTTCAGCTTGTCATG+CGG | 0.663144 | 2_1:-73486751 | Msa0223830:CDS |
| TGTTGGATACTAACACATGT+CGG | 0.666015 | 2_1:-73485348 | Msa0223830:three_prime_UTR |
| AACATATATACACTACCATG+AGG | 0.666750 | 2_1:+73485177 | None:intergenic |
| GACGATACAAGTATATACTG+TGG | 0.667417 | 2_1:-73485975 | Msa0223830:CDS |
| CACCATCATCATGATCACAC+TGG | 0.670155 | 2_1:-73487817 | Msa0223830:CDS |
| TCGAGAGACAAATCTACAAG+GGG | 0.670813 | 2_1:+73485110 | None:intergenic |
| TTTGTGCGTTGGATGTACGA+AGG | 0.675267 | 2_1:+73485572 | None:intergenic |
| ACATATATACACTACCATGA+GGG | 0.677099 | 2_1:+73485178 | None:intergenic |
| TGTTGATGAAGAAGAAGGGG+TGG | 0.677937 | 2_1:-73489142 | Msa0223830:exon |
| GTGCAAGTAATGGACACACC+TGG | 0.681660 | 2_1:-73486924 | Msa0223830:CDS |
| CTGTGGACACGAGTACACAT+TGG | 0.683875 | 2_1:-73485958 | Msa0223830:intron |
| TCGATCCTATGCTGGCCACG+TGG | 0.686304 | 2_1:-73485793 | Msa0223830:CDS |
| TACTTCGAAGGGAAGCCACG+TGG | 0.689024 | 2_1:+73485778 | None:intergenic |
| GTGGATGTTTGCTGGCCATG+AGG | 0.690608 | 2_1:-73486946 | Msa0223830:CDS |
| ATACGTAAGAGCAGTAACTG+TGG | 0.714134 | 2_1:-73485064 | Msa0223830:three_prime_UTR |
| GGTAAAACCAACCTCCTGAG+GGG | 0.722369 | 2_1:+73486711 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTGATAATTATTTGATT+TGG | - | chr2_1:73485450-73485469 | Msa0223830:three_prime_UTR | 15.0% |
| !!! | ATTATAATAACTTGTTCTAT+AGG | - | chr2_1:73485567-73485586 | Msa0223830:CDS | 15.0% |
| !!! | ATGATTATTCTTTGTTTTTT+AGG | - | chr2_1:73485672-73485691 | Msa0223830:intron | 15.0% |
| !!! | AATTTTTTAGTAAACTGTTA+AGG | - | chr2_1:73485897-73485916 | Msa0223830:intron | 15.0% |
| !! | CTATAGTAAAAGATAAAATA+AGG | + | chr2_1:73486083-73486102 | None:intergenic | 15.0% |
| !!! | CACATTTTTTTGAAATAATT+AGG | - | chr2_1:73486249-73486268 | Msa0223830:intron | 15.0% |
| !!! | TATTGACATTTTGATATATT+TGG | - | chr2_1:73487055-73487074 | Msa0223830:intron | 15.0% |
| !!! | TTTAATGAGCATAATTTTTA+GGG | - | chr2_1:73487721-73487740 | Msa0223830:intron | 15.0% |
| !!! | TTTCAATTTTTTTCGTTGTT+AGG | - | chr2_1:73485291-73485310 | Msa0223830:three_prime_UTR | 20.0% |
| !!! | TAGTGTTGATAATTTGATAA+TGG | - | chr2_1:73485629-73485648 | Msa0223830:intron | 20.0% |
| !! | TAGAATTAAAAGCAAGATAT+GGG | - | chr2_1:73486446-73486465 | Msa0223830:intron | 20.0% |
| !! | AAACGAAGAAAAAAATACAT+AGG | + | chr2_1:73486499-73486518 | None:intergenic | 20.0% |
| !! | AAGGATTAAAATACACAAAT+TGG | - | chr2_1:73486641-73486660 | Msa0223830:intron | 20.0% |
| !! | TCATACCTAACAATAATATT+TGG | - | chr2_1:73486998-73487017 | Msa0223830:CDS | 20.0% |
| !! | ATTATGCTCATTAAAGATAT+TGG | + | chr2_1:73487716-73487735 | None:intergenic | 20.0% |
| !!! | CTTTAATGAGCATAATTTTT+AGG | - | chr2_1:73487720-73487739 | Msa0223830:intron | 20.0% |
| !! | GTATATATGTTTATCATTCT+TGG | - | chr2_1:73489067-73489086 | Msa0223830:CDS | 20.0% |
| !! | CATTTAGAATTGCTTAATTC+TGG | - | chr2_1:73485485-73485504 | Msa0223830:exon | 25.0% |
| !! | ACTTATTACATTGACTGAAA+AGG | - | chr2_1:73485605-73485624 | Msa0223830:CDS | 25.0% |
| ! | TTTAGAAAAGGAATTCTGTA+TGG | - | chr2_1:73485739-73485758 | Msa0223830:intron | 25.0% |
| !! | CCTTTTACATGATATTGATA+CGG | - | chr2_1:73486300-73486319 | Msa0223830:intron | 25.0% |
| !! | CTTTTACATGATATTGATAC+GGG | - | chr2_1:73486301-73486320 | Msa0223830:intron | 25.0% |
| ! | GTAGAATTAAAAGCAAGATA+TGG | - | chr2_1:73486445-73486464 | Msa0223830:intron | 25.0% |
| ! | AGAATTAAAAGCAAGATATG+GGG | - | chr2_1:73486447-73486466 | Msa0223830:intron | 25.0% |
| ! | GTGTTTCAAATACAATTCAT+TGG | - | chr2_1:73486537-73486556 | Msa0223830:intron | 25.0% |
| ! | GCTTACAGAATATAGAAAAA+AGG | - | chr2_1:73486622-73486641 | Msa0223830:intron | 25.0% |
| !! | GAAAATTATTTGGTTAGTTG+TGG | + | chr2_1:73486766-73486785 | None:intergenic | 25.0% |
| !!! | GATCTTTTGGGAAAATTATT+TGG | + | chr2_1:73486776-73486795 | None:intergenic | 25.0% |
| ! | CAAAGAGTAAAATTAGAGAA+GGG | + | chr2_1:73486824-73486843 | None:intergenic | 25.0% |
| ! | TGTTGCCAAATATTATTGTT+AGG | + | chr2_1:73487006-73487025 | None:intergenic | 25.0% |
| !!! | ATTGATCGTATAGTTTTACT+TGG | - | chr2_1:73487115-73487134 | Msa0223830:intron | 25.0% |
| ! | TTTCTGTATATTATTATGCC+TGG | - | chr2_1:73487145-73487164 | Msa0223830:intron | 25.0% |
| ! | TATATTATTATGCCTGGTTA+TGG | - | chr2_1:73487151-73487170 | Msa0223830:intron | 25.0% |
| ! | ATTGATATCCATTTGAATGA+CGG | - | chr2_1:73487257-73487276 | Msa0223830:intron | 25.0% |
| ! | GTTTGACAATAATGCAAATA+AGG | + | chr2_1:73487357-73487376 | None:intergenic | 25.0% |
| ! | TGTTTATTTATACTGTAAGC+AGG | - | chr2_1:73487409-73487428 | Msa0223830:intron | 25.0% |
| !!! | ATAATTTTTAGGGCTTGTTT+GGG | - | chr2_1:73487731-73487750 | Msa0223830:intron | 25.0% |
| ! | TAAAAATGACTGAGTTCATT+CGG | - | chr2_1:73487961-73487980 | Msa0223830:CDS | 25.0% |
| ! | ATTTACTTGCATTTACAACT+AGG | + | chr2_1:73488114-73488133 | None:intergenic | 25.0% |
| ! | TGTATGTTTGCAGAATAATA+CGG | - | chr2_1:73488379-73488398 | Msa0223830:CDS | 25.0% |
| ! | ACTACTCATAAAGAATAACA+AGG | + | chr2_1:73488515-73488534 | None:intergenic | 25.0% |
| !! | ATGTGTCACTAATATTTCTT+TGG | - | chr2_1:73488536-73488555 | Msa0223830:CDS | 25.0% |
| ! | ACTCTTTAGATAAAAGCAAA+AGG | + | chr2_1:73488582-73488601 | None:intergenic | 25.0% |
| ! | TCTAAAGAGTAAGTATTCTT+TGG | - | chr2_1:73488592-73488611 | Msa0223830:intron | 25.0% |
| ! | CTAAAGAGTAAGTATTCTTT+GGG | - | chr2_1:73488593-73488612 | Msa0223830:intron | 25.0% |
| ! | AAAAATTATCCTTTGCTTGT+CGG | + | chr2_1:73488744-73488763 | None:intergenic | 25.0% |
| ! | TATCATTCTCATATTGCTAT+TGG | + | chr2_1:73488830-73488849 | None:intergenic | 25.0% |
| ! | AAATGTGTTGATGAAGAAGA+AGG | - | chr2_1:73485085-73485104 | Msa0223830:three_prime_UTR | 30.0% |
| ! | AATGTGTTGATGAAGAAGAA+GGG | - | chr2_1:73485086-73485105 | Msa0223830:three_prime_UTR | 30.0% |
| CAACCAAACAGTAAAATTAG+TGG | - | chr2_1:73485145-73485164 | Msa0223830:three_prime_UTR | 30.0% | |
| ! | TTGCCACTAATTTTACTGTT+TGG | + | chr2_1:73485151-73485170 | None:intergenic | 30.0% |
| !! | TTGAAGCTTTAGAAAGCATT+TGG | + | chr2_1:73485202-73485221 | None:intergenic | 30.0% |
| AAAAAAAAAAAGACGAACCC+TGG | + | chr2_1:73485255-73485274 | None:intergenic | 30.0% | |
| !!! | AGGCAACTTTGTTTTAGAAA+AGG | - | chr2_1:73485727-73485746 | Msa0223830:intron | 30.0% |
| GAATTCTGTATGGATTTATG+CGG | - | chr2_1:73485749-73485768 | Msa0223830:intron | 30.0% | |
| GGTGTAATTTGATTATCTTC+TGG | - | chr2_1:73485918-73485937 | Msa0223830:intron | 30.0% | |
| !!! | ATAAGTTTTGTGAGAGTGTT+TGG | - | chr2_1:73485942-73485961 | Msa0223830:intron | 30.0% |
| !!! | TAAGTTTTGTGAGAGTGTTT+GGG | - | chr2_1:73485943-73485962 | Msa0223830:intron | 30.0% |
| AATAAGCTGTAAATCCAAAC+TGG | - | chr2_1:73486157-73486176 | Msa0223830:intron | 30.0% | |
| ATAAGCTGTAAATCCAAACT+GGG | - | chr2_1:73486158-73486177 | Msa0223830:intron | 30.0% | |
| CCGTATCAATATCATGTAAA+AGG | + | chr2_1:73486303-73486322 | None:intergenic | 30.0% | |
| ATGCATTGAGCAAGAAAAAT+CGG | - | chr2_1:73486368-73486387 | Msa0223830:intron | 30.0% | |
| TAAAGAGCAAATTAGAAGTG+AGG | - | chr2_1:73486560-73486579 | Msa0223830:intron | 30.0% | |
| TTTCTATATTCTGTAAGCTG+CGG | + | chr2_1:73486620-73486639 | None:intergenic | 30.0% | |
| CCAAAGAGTAAAATTAGAGA+AGG | + | chr2_1:73486825-73486844 | None:intergenic | 30.0% | |
| ! | CCTTCTCTAATTTTACTCTT+TGG | - | chr2_1:73486822-73486841 | Msa0223830:intron | 30.0% |
| GAAGTTGTTGCAAATTTGAT+TGG | - | chr2_1:73487026-73487045 | Msa0223830:intron | 30.0% | |
| TTTCAAATTTCAAGGACTTC+TGG | + | chr2_1:73487636-73487655 | None:intergenic | 30.0% | |
| !!! | CATAATTTTTAGGGCTTGTT+TGG | - | chr2_1:73487730-73487749 | Msa0223830:intron | 30.0% |
| TCGTTGAATATGTCTTCTTA+AGG | - | chr2_1:73487996-73488015 | Msa0223830:intron | 30.0% | |
| TATGTATGTCGAAAAATGCT+TGG | - | chr2_1:73488035-73488054 | Msa0223830:intron | 30.0% | |
| AAAATGTTATTGCTGATGCA+AGG | - | chr2_1:73488088-73488107 | Msa0223830:intron | 30.0% | |
| !! | TACAAAAGTACTAGAGTCAA+TGG | + | chr2_1:73488363-73488382 | None:intergenic | 30.0% |
| AAGCATAAATATTCCACAGA+TGG | + | chr2_1:73488961-73488980 | None:intergenic | 30.0% | |
| ! | TTTGAGTTCATTCTTGTTCT+CGG | - | chr2_1:73489014-73489033 | Msa0223830:CDS | 30.0% |
| TTGTTCTCGGGTTTAAAAAT+AGG | - | chr2_1:73489027-73489046 | Msa0223830:CDS | 30.0% | |
| TAAAAATAGGTATTCCCTCA+TGG | - | chr2_1:73489040-73489059 | Msa0223830:CDS | 30.0% | |
| ACATATATACACTACCATGA+GGG | + | chr2_1:73489057-73489076 | None:intergenic | 30.0% | |
| AACATATATACACTACCATG+AGG | + | chr2_1:73489058-73489077 | None:intergenic | 30.0% | |
| TAAAAAGGAGAGAGAGAAAG+AGG | - | chr2_1:73485061-73485080 | Msa0223830:three_prime_UTR | 35.0% | |
| ! | ATGTGTTGATGAAGAAGAAG+GGG | - | chr2_1:73485087-73485106 | Msa0223830:three_prime_UTR | 35.0% |
| AGGAAAGAGAGAGAAGAAAT+GGG | + | chr2_1:73485174-73485193 | None:intergenic | 35.0% | |
| AAGGAAAGAGAGAGAAGAAA+TGG | + | chr2_1:73485175-73485194 | None:intergenic | 35.0% | |
| !! | TTAGAAAGCATTTGGAAGGA+AGG | + | chr2_1:73485194-73485213 | None:intergenic | 35.0% |
| !! | AGCTTTAGAAAGCATTTGGA+AGG | + | chr2_1:73485198-73485217 | None:intergenic | 35.0% |
| ATCTTGAAGCGTGATTATGA+AGG | - | chr2_1:73485318-73485337 | Msa0223830:three_prime_UTR | 35.0% | |
| !!! | TTTGTTTTTTAGGTGAGAGC+TGG | - | chr2_1:73485682-73485701 | Msa0223830:intron | 35.0% |
| !!! | TTGTTTTTTAGGTGAGAGCT+GGG | - | chr2_1:73485683-73485702 | Msa0223830:intron | 35.0% |
| AAACAAAGTTGCCTCACATT+AGG | + | chr2_1:73485721-73485740 | None:intergenic | 35.0% | |
| TTCCTCATTGCAGATTGAAT+TGG | - | chr2_1:73485858-73485877 | Msa0223830:intron | 35.0% | |
| TGATAACATAACCGCAGATT+AGG | + | chr2_1:73486231-73486250 | None:intergenic | 35.0% | |
| AAGCGTATGATAACTGCAAA+AGG | - | chr2_1:73486688-73486707 | Msa0223830:intron | 35.0% | |
| GATGAATATCCTAATGCTCA+CGG | - | chr2_1:73486710-73486729 | Msa0223830:intron | 35.0% | |
| ! | TAGTGAAAACGGGATCTTTT+GGG | + | chr2_1:73486788-73486807 | None:intergenic | 35.0% |
| ! | ATAGTGAAAACGGGATCTTT+TGG | + | chr2_1:73486789-73486808 | None:intergenic | 35.0% |
| TGACTGAAGGATAGTGAAAA+CGG | + | chr2_1:73486799-73486818 | None:intergenic | 35.0% | |
| ATGTGTAGACCCATATTTCT+AGG | + | chr2_1:73486863-73486882 | None:intergenic | 35.0% | |
| TGGGTCTACACATACATATA+TGG | - | chr2_1:73486870-73486889 | Msa0223830:intron | 35.0% | |
| GAGAAAATGCTAAGTAGACA+AGG | + | chr2_1:73486980-73486999 | None:intergenic | 35.0% | |
| TTCAAATGGATATCAATGCC+AGG | + | chr2_1:73487254-73487273 | None:intergenic | 35.0% | |
| ACTTATCACCGTCATTCAAA+TGG | + | chr2_1:73487268-73487287 | None:intergenic | 35.0% | |
| ATTTGAATGACGGTGATAAG+TGG | - | chr2_1:73487267-73487286 | Msa0223830:intron | 35.0% | |
| AAAAAGAACAAGTTAGTGCC+AGG | + | chr2_1:73487545-73487564 | None:intergenic | 35.0% | |
| ! | GCGGGTATTTTCAAATTTCA+AGG | + | chr2_1:73487644-73487663 | None:intergenic | 35.0% |
| AATTTGAAAATACCCGCACA+AGG | - | chr2_1:73487647-73487666 | Msa0223830:intron | 35.0% | |
| ATTTGAAAATACCCGCACAA+GGG | - | chr2_1:73487648-73487667 | Msa0223830:intron | 35.0% | |
| ATTTAAATTGCAGCCAAACG+AGG | - | chr2_1:73487678-73487697 | Msa0223830:intron | 35.0% | |
| TCGCTGTAATAATATGAGAG+TGG | - | chr2_1:73487754-73487773 | Msa0223830:intron | 35.0% | |
| CGCTGTAATAATATGAGAGT+GGG | - | chr2_1:73487755-73487774 | Msa0223830:intron | 35.0% | |
| TACACTAAGATTGCAGACTT+GGG | + | chr2_1:73487835-73487854 | None:intergenic | 35.0% | |
| GTTGTCAAGTCAGTTATACT+TGG | - | chr2_1:73488142-73488161 | Msa0223830:intron | 35.0% | |
| ACATCCCACATCTTCAATTA+TGG | - | chr2_1:73488177-73488196 | Msa0223830:intron | 35.0% | |
| CTCTCCATAATTGAAGATGT+GGG | + | chr2_1:73488184-73488203 | None:intergenic | 35.0% | |
| ACTCTCCATAATTGAAGATG+TGG | + | chr2_1:73488185-73488204 | None:intergenic | 35.0% | |
| AGAAGATTGCATCTGTAACA+GGG | + | chr2_1:73488213-73488232 | None:intergenic | 35.0% | |
| TTACAGATGCAATCTTCTCT+TGG | - | chr2_1:73488215-73488234 | Msa0223830:intron | 35.0% | |
| CAGTATATACTTGTATCGTC+TGG | + | chr2_1:73488257-73488276 | None:intergenic | 35.0% | |
| GACGATACAAGTATATACTG+TGG | - | chr2_1:73488257-73488276 | Msa0223830:intron | 35.0% | |
| AAACAAAGCAAAGAACACTG+AGG | + | chr2_1:73488320-73488339 | None:intergenic | 35.0% | |
| AAAAGGCCAATGATTGAAAC+AGG | + | chr2_1:73488565-73488584 | None:intergenic | 35.0% | |
| TAAAGACTCCTGTATAGAGT+AGG | - | chr2_1:73488763-73488782 | Msa0223830:intron | 35.0% | |
| TTCATTGACCTACTCTATAC+AGG | + | chr2_1:73488774-73488793 | None:intergenic | 35.0% | |
| TGTTGGATACTAACACATGT+CGG | - | chr2_1:73488884-73488903 | Msa0223830:intron | 35.0% | |
| CTACGTAAAACCAACACTTA+TGG | + | chr2_1:73488929-73488948 | None:intergenic | 35.0% | |
| GTAGTTAATGAATCCATCTG+TGG | - | chr2_1:73488945-73488964 | Msa0223830:intron | 35.0% | |
| TTGAGTTCATTCTTGTTCTC+GGG | - | chr2_1:73489015-73489034 | Msa0223830:CDS | 35.0% | |
| ATCGAGAGACAAATCTACAA+GGG | + | chr2_1:73489126-73489145 | None:intergenic | 35.0% | |
| CTGCAATGAGGAAGACATAT+TGG | + | chr2_1:73485851-73485870 | None:intergenic | 40.0% | |
| CACCAATTCAATCTGCAATG+AGG | + | chr2_1:73485863-73485882 | None:intergenic | 40.0% | |
| CTAAGTTTCCCAAGCTGATA+GGG | - | chr2_1:73486182-73486201 | Msa0223830:intron | 40.0% | |
| TTCAGAAACCCTATCAGCTT+GGG | + | chr2_1:73486193-73486212 | None:intergenic | 40.0% | |
| TATGCTGAAAGCCTAATCTG+CGG | - | chr2_1:73486217-73486236 | Msa0223830:intron | 40.0% | |
| GGTATGCATAATTGTCACTC+AGG | + | chr2_1:73486282-73486301 | None:intergenic | 40.0% | |
| TTGCTCAATGCATCTATGAC+AGG | + | chr2_1:73486361-73486380 | None:intergenic | 40.0% | |
| AAAAGCAAGATATGGGGCAA+AGG | - | chr2_1:73486453-73486472 | Msa0223830:intron | 40.0% | |
| GACTGAAGGATAGTGAAAAC+GGG | + | chr2_1:73486798-73486817 | None:intergenic | 40.0% | |
| TTAGAGAAGGGAATGACTGA+AGG | + | chr2_1:73486812-73486831 | None:intergenic | 40.0% | |
| CTCGCTAACTATCATTTCTG+TGG | - | chr2_1:73486908-73486927 | Msa0223830:intron | 40.0% | |
| TTGTCAAGGGGAGAAAGAAA+GGG | + | chr2_1:73486936-73486955 | None:intergenic | 40.0% | |
| ATTATGCCTGGTTATGGCAA+AGG | - | chr2_1:73487157-73487176 | Msa0223830:intron | 40.0% | |
| TTATGCCTGGTTATGGCAAA+GGG | - | chr2_1:73487158-73487177 | Msa0223830:intron | 40.0% | |
| CCTGTAATGCAACATGAGAA+GGG | + | chr2_1:73487199-73487218 | None:intergenic | 40.0% | |
| ACCTGTAATGCAACATGAGA+AGG | + | chr2_1:73487200-73487219 | None:intergenic | 40.0% | |
| CATGTTGCATTACAGGTGAT+TGG | - | chr2_1:73487203-73487222 | Msa0223830:intron | 40.0% | |
| ! | TGTCAAACCTTCTTGTTGTG+TGG | - | chr2_1:73487369-73487388 | Msa0223830:intron | 40.0% |
| ACTTTGTTCAGCTTGTCATG+CGG | - | chr2_1:73487481-73487500 | Msa0223830:intron | 40.0% | |
| TTTCAAGGACTTCTGGCAAA+GGG | + | chr2_1:73487629-73487648 | None:intergenic | 40.0% | |
| ATTTCAAGGACTTCTGGCAA+AGG | + | chr2_1:73487630-73487649 | None:intergenic | 40.0% | |
| TAAATCACAAGTCCCTTGTG+CGG | + | chr2_1:73487663-73487682 | None:intergenic | 40.0% | |
| ACACTAAGATTGCAGACTTG+GGG | + | chr2_1:73487834-73487853 | None:intergenic | 40.0% | |
| GTACACTAAGATTGCAGACT+TGG | + | chr2_1:73487836-73487855 | None:intergenic | 40.0% | |
| TGCAATCTTAGTGTACGAGA+AGG | - | chr2_1:73487840-73487859 | Msa0223830:CDS | 40.0% | |
| GCAATCTTAGTGTACGAGAA+GGG | - | chr2_1:73487841-73487860 | Msa0223830:CDS | 40.0% | |
| ! | TCATACACGTGCTGATCAAA+GGG | + | chr2_1:73487879-73487898 | None:intergenic | 40.0% |
| ! | TTCATACACGTGCTGATCAA+AGG | + | chr2_1:73487880-73487899 | None:intergenic | 40.0% |
| ! | CACGTGTATGAAGTGTTCAA+TGG | - | chr2_1:73487888-73487907 | Msa0223830:CDS | 40.0% |
| GAGAAGATTGCATCTGTAAC+AGG | + | chr2_1:73488214-73488233 | None:intergenic | 40.0% | |
| AAGTACTAGAGTCAATGGCA+CGG | + | chr2_1:73488358-73488377 | None:intergenic | 40.0% | |
| ATAATACGGACTTCGCATTG+AGG | - | chr2_1:73488393-73488412 | Msa0223830:CDS | 40.0% | |
| TGGTAGCCTGTTTCAATCAT+TGG | - | chr2_1:73488556-73488575 | Msa0223830:intron | 40.0% | |
| ! | TTTTCCATCTTCAGTGTGGT+CGG | + | chr2_1:73488625-73488644 | None:intergenic | 40.0% |
| CTGGAATGTTTAACGATTGC+CGG | + | chr2_1:73488687-73488706 | None:intergenic | 40.0% | |
| TGAACTATGAACCATTGACC+CGG | - | chr2_1:73488790-73488809 | Msa0223830:intron | 40.0% | |
| AAACCAACACTTATGGTCGA+AGG | + | chr2_1:73488922-73488941 | None:intergenic | 40.0% | |
| TCGAGAGACAAATCTACAAG+GGG | + | chr2_1:73489125-73489144 | None:intergenic | 40.0% | |
| CATCGAGAGACAAATCTACA+AGG | + | chr2_1:73489127-73489146 | None:intergenic | 40.0% | |
| ATACGTAAGAGCAGTAACTG+TGG | - | chr2_1:73489168-73489187 | Msa0223830:five_prime_UTR | 40.0% | |
| ! | TGTTGATGAAGAAGAAGGGG+TGG | - | chr2_1:73485090-73485109 | Msa0223830:three_prime_UTR | 45.0% |
| ACAGGAAGAAAAAGCGGACA+TGG | + | chr2_1:73485231-73485250 | None:intergenic | 45.0% | |
| CCTGGAACAGGAAGAAAAAG+CGG | + | chr2_1:73485237-73485256 | None:intergenic | 45.0% | |
| !!! | CGCTTTTTCTTCCTGTTCCA+GGG | - | chr2_1:73485235-73485254 | Msa0223830:three_prime_UTR | 45.0% |
| AAAAAGACGAACCCTGGAAC+AGG | + | chr2_1:73485249-73485268 | None:intergenic | 45.0% | |
| TTAGTGTCTGGCCTAATGTG+AGG | - | chr2_1:73485707-73485726 | Msa0223830:intron | 45.0% | |
| CATATAAAACGCTGCGTGGA+GGG | - | chr2_1:73485785-73485804 | Msa0223830:CDS | 45.0% | |
| ATATAAAACGCTGCGTGGAG+GGG | - | chr2_1:73485786-73485805 | Msa0223830:CDS | 45.0% | |
| CAGATTGAATTGGTGAGAGC+AGG | - | chr2_1:73485868-73485887 | Msa0223830:intron | 45.0% | |
| CCTATCAGCTTGGGAAACTT+AGG | + | chr2_1:73486184-73486203 | None:intergenic | 45.0% | |
| CCTAAGTTTCCCAAGCTGAT+AGG | - | chr2_1:73486181-73486200 | Msa0223830:intron | 45.0% | |
| CTTCAGAAACCCTATCAGCT+TGG | + | chr2_1:73486194-73486213 | None:intergenic | 45.0% | |
| GCATAATTGTCACTCAGGCA+AGG | + | chr2_1:73486277-73486296 | None:intergenic | 45.0% | |
| GATATTGATACGGGCACAGT+TGG | - | chr2_1:73486310-73486329 | Msa0223830:intron | 45.0% | |
| CACCATCATCATGATCACAC+TGG | - | chr2_1:73486415-73486434 | Msa0223830:intron | 45.0% | |
| CACCAGTGTGATCATGATGA+TGG | + | chr2_1:73486420-73486439 | None:intergenic | 45.0% | |
| CATCATCATGATCACACTGG+TGG | - | chr2_1:73486418-73486437 | Msa0223830:intron | 45.0% | |
| TCCAAGCAGGCCTAGAAATA+TGG | - | chr2_1:73486850-73486869 | Msa0223830:intron | 45.0% | |
| CCAAGCAGGCCTAGAAATAT+GGG | - | chr2_1:73486851-73486870 | Msa0223830:intron | 45.0% | |
| ! | AGTTAGCGAGACAGAGTGTT+AGG | + | chr2_1:73486898-73486917 | None:intergenic | 45.0% |
| CTTGTCAAGGGGAGAAAGAA+AGG | + | chr2_1:73486937-73486956 | None:intergenic | 45.0% | |
| TTCTTTCTCCCCTTGACAAG+CGG | - | chr2_1:73486937-73486956 | Msa0223830:CDS | 45.0% | |
| ATCTGTTTCCCGCTTGTCAA+GGG | + | chr2_1:73486949-73486968 | None:intergenic | 45.0% | |
| AATCTGTTTCCCGCTTGTCA+AGG | + | chr2_1:73486950-73486969 | None:intergenic | 45.0% | |
| CCCTTCTCATGTTGCATTAC+AGG | - | chr2_1:73487196-73487215 | Msa0223830:intron | 45.0% | |
| GTTCAGCAACCGACAACAAA+AGG | - | chr2_1:73487225-73487244 | Msa0223830:intron | 45.0% | |
| ACCGACAACAAAAGGATTCC+TGG | - | chr2_1:73487233-73487252 | Msa0223830:intron | 45.0% | |
| !! | GCCAGGAATCCTTTTGTTGT+CGG | + | chr2_1:73487237-73487256 | None:intergenic | 45.0% |
| GGTGATAAGTGGATGTTTGC+TGG | - | chr2_1:73487278-73487297 | Msa0223830:intron | 45.0% | |
| TGTCCATTACTTGCACCTCA+TGG | + | chr2_1:73487304-73487323 | None:intergenic | 45.0% | |
| AGAAGAGCCACACAACAAGA+AGG | + | chr2_1:73487379-73487398 | None:intergenic | 45.0% | |
| CCACATCAGCTTCTACTTTC+CGG | - | chr2_1:73487432-73487451 | Msa0223830:intron | 45.0% | |
| CACATCAGCTTCTACTTTCC+GGG | - | chr2_1:73487433-73487452 | Msa0223830:intron | 45.0% | |
| GTAAAAATTGCCCCAGATCC+CGG | + | chr2_1:73487454-73487473 | None:intergenic | 45.0% | |
| !! | GGATCTGGGGCAATTTTTAC+AGG | - | chr2_1:73487454-73487473 | Msa0223830:intron | 45.0% |
| TCATGCGGCAAACTCTTTGA+AGG | - | chr2_1:73487496-73487515 | Msa0223830:intron | 45.0% | |
| AGGTAAAACCAACCTCCTGA+GGG | + | chr2_1:73487525-73487544 | None:intergenic | 45.0% | |
| AAATCACAAGTCCCTTGTGC+GGG | + | chr2_1:73487662-73487681 | None:intergenic | 45.0% | |
| AGAGTTTGAGTGTAGTGCGA+TGG | - | chr2_1:73487787-73487806 | Msa0223830:CDS | 45.0% | |
| CACTAAGATTGCAGACTTGG+GGG | + | chr2_1:73487833-73487852 | None:intergenic | 45.0% | |
| ! | CATACACGTGCTGATCAAAG+GGG | + | chr2_1:73487878-73487897 | None:intergenic | 45.0% |
| AGATTGCATCTGTAACAGGG+AGG | + | chr2_1:73488210-73488229 | None:intergenic | 45.0% | |
| AGTCAATGGCACGGTACTTA+GGG | + | chr2_1:73488349-73488368 | None:intergenic | 45.0% | |
| ! | GATCGAAGTTCCTTGTTTCC+AGG | + | chr2_1:73488425-73488444 | None:intergenic | 45.0% |
| AAGGAACTTCGATCCTATGC+TGG | - | chr2_1:73488431-73488450 | Msa0223830:CDS | 45.0% | |
| GCAATTCCAAAACTCACCGT+GGG | + | chr2_1:73488488-73488507 | None:intergenic | 45.0% | |
| GACCACACTGAAGATGGAAA+AGG | - | chr2_1:73488624-73488643 | Msa0223830:intron | 45.0% | |
| ! | AGCCTTTTCCATCTTCAGTG+TGG | + | chr2_1:73488629-73488648 | None:intergenic | 45.0% |
| TTTGTGCGTTGGATGTACGA+AGG | + | chr2_1:73488663-73488682 | None:intergenic | 45.0% | |
| GTACATCCAACGCACAAATC+CGG | - | chr2_1:73488665-73488684 | Msa0223830:intron | 45.0% | |
| ! | CTTATGGTCGAAGGCTTGTT+TGG | + | chr2_1:73488913-73488932 | None:intergenic | 45.0% |
| AAGCCTTCGACCATAAGTGT+TGG | - | chr2_1:73488916-73488935 | Msa0223830:intron | 45.0% | |
| ! | AGCAGTAACTGTGGCTCTAT+TGG | - | chr2_1:73489177-73489196 | Msa0223830:five_prime_UTR | 45.0% |
| !!! | AAAAAATTGAAATTTTAATT+CGG | + | chr2_1:73485283-73485302 | None:intergenic | 5.0% |
| TGATGAAGAAGAAGGGGTGG+TGG | - | chr2_1:73485093-73485112 | Msa0223830:three_prime_UTR | 50.0% | |
| AGAAAAAGCGGACATGGCAG+TGG | + | chr2_1:73485225-73485244 | None:intergenic | 50.0% | |
| !!! | CCGCTTTTTCTTCCTGTTCC+AGG | - | chr2_1:73485234-73485253 | Msa0223830:three_prime_UTR | 50.0% |
| TGAGAGCTGGGTTTAGTGTC+TGG | - | chr2_1:73485695-73485714 | Msa0223830:intron | 50.0% | |
| ! | ACGCAGCGTTTTATATGGCG+TGG | + | chr2_1:73485782-73485801 | None:intergenic | 50.0% |
| ACGCCATATAAAACGCTGCG+TGG | - | chr2_1:73485781-73485800 | Msa0223830:CDS | 50.0% | |
| ! | CCTCCACGCAGCGTTTTATA+TGG | + | chr2_1:73485787-73485806 | None:intergenic | 50.0% |
| CCATATAAAACGCTGCGTGG+AGG | - | chr2_1:73485784-73485803 | Msa0223830:CDS | 50.0% | |
| TGGGAAACTTAGGCCCAGTT+TGG | + | chr2_1:73486174-73486193 | None:intergenic | 50.0% | |
| ATGACAGGCGTAGCTTCAGA+AGG | + | chr2_1:73486346-73486365 | None:intergenic | 50.0% | |
| AGCTTAGCTCCGTGAGCATT+AGG | + | chr2_1:73486722-73486741 | None:intergenic | 50.0% | |
| GGACAGAGAATGTTCCCTGT+AGG | + | chr2_1:73486745-73486764 | None:intergenic | 50.0% | |
| CTCTTTGGATGACTCCAAGC+AGG | - | chr2_1:73486837-73486856 | Msa0223830:intron | 50.0% | |
| !! | CCCATATTTCTAGGCCTGCT+TGG | + | chr2_1:73486854-73486873 | None:intergenic | 50.0% |
| TCTTTCTCCCCTTGACAAGC+GGG | - | chr2_1:73486938-73486957 | Msa0223830:CDS | 50.0% | |
| TCTGTTTCCCGCTTGTCAAG+GGG | + | chr2_1:73486948-73486967 | None:intergenic | 50.0% | |
| TGGCCATGAGGTGCAAGTAA+TGG | - | chr2_1:73487298-73487317 | Msa0223830:intron | 50.0% | |
| !! | GTGCAAGTAATGGACACACC+TGG | - | chr2_1:73487308-73487327 | Msa0223830:intron | 50.0% |
| CCGGAAAGTAGAAGCTGATG+TGG | + | chr2_1:73487435-73487454 | None:intergenic | 50.0% | |
| AGCTTCTACTTTCCGGGATC+TGG | - | chr2_1:73487439-73487458 | Msa0223830:intron | 50.0% | |
| GCTTCTACTTTCCGGGATCT+GGG | - | chr2_1:73487440-73487459 | Msa0223830:intron | 50.0% | |
| CTTCTACTTTCCGGGATCTG+GGG | - | chr2_1:73487441-73487460 | Msa0223830:intron | 50.0% | |
| ! | ACTCTTTGAAGGAACCCCTC+AGG | - | chr2_1:73487507-73487526 | Msa0223830:intron | 50.0% |
| GGTAAAACCAACCTCCTGAG+GGG | + | chr2_1:73487524-73487543 | None:intergenic | 50.0% | |
| CAGGTAAAACCAACCTCCTG+AGG | + | chr2_1:73487526-73487545 | None:intergenic | 50.0% | |
| !!! | CTCAGGAGGTTGGTTTTACC+TGG | - | chr2_1:73487524-73487543 | Msa0223830:intron | 50.0% |
| GTCACCACAAAGTCCTCGTT+TGG | + | chr2_1:73487694-73487713 | None:intergenic | 50.0% | |
| CTGTGGACACGAGTACACAT+TGG | - | chr2_1:73488274-73488293 | Msa0223830:intron | 50.0% | |
| GAGTCAATGGCACGGTACTT+AGG | + | chr2_1:73488350-73488369 | None:intergenic | 50.0% | |
| GTGGCTTCCCTTCGAAGTAA+AGG | - | chr2_1:73488458-73488477 | Msa0223830:CDS | 50.0% | |
| GGGCAAGCCTTTACTTCGAA+GGG | + | chr2_1:73488468-73488487 | None:intergenic | 50.0% | |
| TGGGCAAGCCTTTACTTCGA+AGG | + | chr2_1:73488469-73488488 | None:intergenic | 50.0% | |
| TCGAAGTAAAGGCTTGCCCA+CGG | - | chr2_1:73488469-73488488 | Msa0223830:CDS | 50.0% | |
| CGCAATTCCAAAACTCACCG+TGG | + | chr2_1:73488489-73488508 | None:intergenic | 50.0% | |
| GATTCCGACCACACTGAAGA+TGG | - | chr2_1:73488618-73488637 | Msa0223830:intron | 50.0% | |
| GCGTTGGATGTACGAAGGAA+TGG | + | chr2_1:73488658-73488677 | None:intergenic | 50.0% | |
| TGCTTGTCGGATGATACCCA+GGG | + | chr2_1:73488731-73488750 | None:intergenic | 50.0% | |
| TTGCTTGTCGGATGATACCC+AGG | + | chr2_1:73488732-73488751 | None:intergenic | 50.0% | |
| GGGTATCATCCGACAAGCAA+AGG | - | chr2_1:73488732-73488751 | Msa0223830:intron | 50.0% | |
| !! | ATTGGTGTCAGTGTCGTGTC+CGG | + | chr2_1:73488812-73488831 | None:intergenic | 50.0% |
| CACATGTGTCAGTGTCGTGT+CGG | - | chr2_1:73488861-73488880 | Msa0223830:intron | 50.0% | |
| ! | TGAAGAAGAAGGGGTGGTGG+TGG | - | chr2_1:73485096-73485115 | Msa0223830:three_prime_UTR | 55.0% |
| ! | GGCTAGTCGCTCACTTAGAG+TGG | - | chr2_1:73485807-73485826 | Msa0223830:CDS | 55.0% |
| GTCGCTCACTTAGAGTGGCT+CGG | - | chr2_1:73485812-73485831 | Msa0223830:CDS | 55.0% | |
| TCTGTAAGCTGCGGCGATTC+AGG | + | chr2_1:73486611-73486630 | None:intergenic | 55.0% | |
| TCACGGAGCTAAGCTCCTAC+AGG | - | chr2_1:73486727-73486746 | Msa0223830:CDS | 55.0% | |
| CACGGAGCTAAGCTCCTACA+GGG | - | chr2_1:73486728-73486747 | Msa0223830:CDS | 55.0% | |
| CACAGCCCTTTGCCATAACC+AGG | + | chr2_1:73487166-73487185 | None:intergenic | 55.0% | |
| ! | GTGGATGTTTGCTGGCCATG+AGG | - | chr2_1:73487286-73487305 | Msa0223830:intron | 55.0% |
| ATGTGACCTCGAGTGTGACC+AGG | + | chr2_1:73487329-73487348 | None:intergenic | 55.0% | |
| ! | CTTTGAAGGAACCCCTCAGG+AGG | - | chr2_1:73487510-73487529 | Msa0223830:intron | 55.0% |
| GCAGCCAAACGAGGACTTTG+TGG | - | chr2_1:73487687-73487706 | Msa0223830:intron | 55.0% | |
| TTCGCATTGAGGCTCGAACC+TGG | - | chr2_1:73488404-73488423 | Msa0223830:CDS | 55.0% | |
| GAGGCTCGAACCTGGAAACA+AGG | - | chr2_1:73488412-73488431 | Msa0223830:CDS | 55.0% | |
| TACTTCGAAGGGAAGCCACG+TGG | + | chr2_1:73488457-73488476 | None:intergenic | 55.0% | |
| CGATTGCCGGATTTGTGCGT+TGG | + | chr2_1:73488674-73488693 | None:intergenic | 55.0% | |
| TCTGCATCATCTGCTGTGGC+TGG | + | chr2_1:73488706-73488725 | None:intergenic | 55.0% | |
| GGCTTCTGCATCATCTGCTG+TGG | + | chr2_1:73488710-73488729 | None:intergenic | 55.0% | |
| AGCAGATGATGCAGAAGCCC+TGG | - | chr2_1:73488711-73488730 | Msa0223830:intron | 55.0% | |
| GCAGATGATGCAGAAGCCCT+GGG | - | chr2_1:73488712-73488731 | Msa0223830:intron | 55.0% | |
| !! | TTGGTGTCAGTGTCGTGTCC+GGG | + | chr2_1:73488811-73488830 | None:intergenic | 55.0% |
| ! | TGTCAGTGTCGTGTCGGTGT+TGG | - | chr2_1:73488867-73488886 | Msa0223830:intron | 55.0% |
| GACACACCTGGTCACACTCG+AGG | - | chr2_1:73487320-73487339 | Msa0223830:intron | 60.0% | |
| GAAGGAACCCCTCAGGAGGT+TGG | - | chr2_1:73487514-73487533 | Msa0223830:intron | 60.0% | |
| TCGATCCTATGCTGGCCACG+TGG | - | chr2_1:73488439-73488458 | Msa0223830:CDS | 60.0% | |
| ! | GGCTTGCCCACGGTGAGTTT+TGG | - | chr2_1:73488479-73488498 | Msa0223830:CDS | 60.0% |
| CAGTGTCGTGTCCGGGTCAA+TGG | + | chr2_1:73488804-73488823 | None:intergenic | 60.0% | |
| GGAAGCCACGTGGCCAGCAT+AGG | + | chr2_1:73488447-73488466 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73485053 | 73489201 | 73485053 | ID=Msa0223830;Name=Msa0223830 |
| chr2_1 | mRNA | 73485053 | 73489201 | 73485053 | ID=Msa0223830-mRNA-1;Parent=Msa0223830;Name=Msa0223830-mRNA-1;_AED=0.17;_eAED=0.17;_QI=42|1|1|1|1|1|8|436|365 |
| chr2_1 | exon | 73485053 | 73485635 | 73485053 | ID=Msa0223830-mRNA-1:exon:21576;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73485764 | 73485862 | 73485764 | ID=Msa0223830-mRNA-1:exon:21575;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73485959 | 73486033 | 73485959 | ID=Msa0223830-mRNA-1:exon:21574;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73486723 | 73486823 | 73486723 | ID=Msa0223830-mRNA-1:exon:21573;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73486913 | 73487036 | 73486913 | ID=Msa0223830-mRNA-1:exon:21572;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73487780 | 73487983 | 73487780 | ID=Msa0223830-mRNA-1:exon:21571;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73488375 | 73488560 | 73488375 | ID=Msa0223830-mRNA-1:exon:21570;Parent=Msa0223830-mRNA-1 |
| chr2_1 | exon | 73488998 | 73489201 | 73488998 | ID=Msa0223830-mRNA-1:exon:21569;Parent=Msa0223830-mRNA-1 |
| chr2_1 | five_prime_UTR | 73489160 | 73489201 | 73489160 | ID=Msa0223830-mRNA-1:five_prime_utr;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73488998 | 73489159 | 73488998 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73488375 | 73488560 | 73488375 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73487780 | 73487983 | 73487780 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73486913 | 73487036 | 73486913 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73486723 | 73486823 | 73486723 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73485959 | 73486033 | 73485959 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73485764 | 73485862 | 73485764 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | CDS | 73485489 | 73485635 | 73485489 | ID=Msa0223830-mRNA-1:cds;Parent=Msa0223830-mRNA-1 |
| chr2_1 | three_prime_UTR | 73485053 | 73485488 | 73485053 | ID=Msa0223830-mRNA-1:three_prime_utr;Parent=Msa0223830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
