Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660960 | XP_003597533.2 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660960 | sp|Q8LDW8|GLO2D_ARATH | 71.084 | 332 | 92 | 3 | 35 | 365 | 1 | 329 | 7.66e-178 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660960 | G7IS04 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0660960 | 0.801235 | 9.908183e-49 | -8.615850e-47 |
| Msa0002110 | Msa0660960 | 0.803355 | 3.627321e-49 | -8.615850e-47 |
| Msa0095230 | Msa0660960 | 0.802668 | 5.030146e-49 | -8.615850e-47 |
| Msa0113370 | Msa0660960 | 0.803413 | 3.528382e-49 | -8.615850e-47 |
| Msa0606640 | Msa0660960 | 0.852919 | 3.364379e-61 | -8.615850e-47 |
| Msa0660960 | Msa0686860 | 0.811435 | 7.010148e-51 | -8.615850e-47 |
| Msa0660960 | Msa0686950 | 0.839653 | 1.392804e-57 | -8.615850e-47 |
| Msa0660960 | Msa0687440 | -0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0660960 | Msa0788450 | 0.804828 | 1.790812e-49 | -8.615850e-47 |
| Msa0660960 | Msa0825570 | 0.805322 | 1.411762e-49 | -8.615850e-47 |
| Msa0660960 | Msa0826540 | 0.801183 | 1.015219e-48 | -8.615850e-47 |
| Msa0660960 | Msa0827520 | 0.838711 | 2.444249e-57 | -8.615850e-47 |
| Msa0660960 | Msa0833950 | 0.805107 | 1.566228e-49 | -8.615850e-47 |
| Msa0660960 | Msa0864820 | 0.821840 | 3.260269e-53 | -8.615850e-47 |
| Msa0660960 | Msa0881530 | 0.818343 | 2.059195e-52 | -8.615850e-47 |
| Msa0660960 | Msa0982090 | 0.817736 | 2.824383e-52 | -8.615850e-47 |
| Msa0660960 | Msa1085610 | 0.823908 | 1.075210e-53 | -8.615850e-47 |
| Msa0660960 | Msa1086200 | 0.803441 | 3.480421e-49 | -8.615850e-47 |
| Msa0660960 | Msa1086320 | 0.811556 | 6.600548e-51 | -8.615850e-47 |
| Msa0660960 | Msa1086490 | 0.820568 | 6.404667e-53 | -8.615850e-47 |
| Msa0660960 | Msa1086510 | 0.802616 | 5.156292e-49 | -8.615850e-47 |
| Msa0660960 | Msa1086670 | 0.827879 | 1.226139e-54 | -8.615850e-47 |
| Msa0660960 | Msa1086680 | 0.805332 | 1.404885e-49 | -8.615850e-47 |
| Msa0660960 | Msa1129480 | -0.803211 | 3.884316e-49 | -8.615850e-47 |
| Msa0660960 | Msa1342960 | 0.814948 | 1.187798e-51 | -8.615850e-47 |
| Msa0660960 | Msa1365030 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0660960 | Msa1367400 | 0.812178 | 4.830392e-51 | -8.615850e-47 |
| Msa0660960 | Msa1382380 | 0.817137 | 3.854252e-52 | -8.615850e-47 |
| Msa0660960 | Msa1388030 | 0.839240 | 1.783162e-57 | -8.615850e-47 |
| Msa0660960 | Msa1462680 | 0.809966 | 1.457307e-50 | -8.615850e-47 |
| Msa0223830 | Msa0660960 | 0.999126 | 1.552027e-291 | -8.615850e-47 |
| Msa0380400 | Msa0660960 | 0.803997 | 2.668631e-49 | -8.615850e-47 |
| Msa0476170 | Msa0660960 | 0.805603 | 1.232738e-49 | -8.615850e-47 |
| Msa0265010 | Msa0660960 | 0.830807 | 2.385070e-55 | -8.615850e-47 |
| Msa0268210 | Msa0660960 | 0.818048 | 2.402079e-52 | -8.615850e-47 |
| Msa0268450 | Msa0660960 | 0.814599 | 1.418960e-51 | -8.615850e-47 |
| Msa0268570 | Msa0660960 | 0.802743 | 4.854524e-49 | -8.615850e-47 |
| Msa0268670 | Msa0660960 | 0.821705 | 3.502814e-53 | -8.615850e-47 |
| Msa0268750 | Msa0660960 | 0.801405 | 9.143195e-49 | -8.615850e-47 |
| Msa0268880 | Msa0660960 | 0.828890 | 6.991883e-55 | -8.615850e-47 |
| Msa0269090 | Msa0660960 | 0.805358 | 1.387248e-49 | -8.615850e-47 |
| Msa0310720 | Msa0660960 | 0.827958 | 1.173275e-54 | -8.615850e-47 |
| Msa0310730 | Msa0660960 | 0.827038 | 1.951107e-54 | -8.615850e-47 |
| Msa0576080 | Msa0660960 | 0.805433 | 1.338239e-49 | -8.615850e-47 |
| Msa0576120 | Msa0660960 | 0.838870 | 2.223878e-57 | -8.615850e-47 |
| Msa0582860 | Msa0660960 | 0.808644 | 2.798977e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660960 | MtrunA17_Chr2g0329571 | 97.568 | 329 | 8 | 0 | 37 | 365 | 1 | 329 | 0.0 | 674 |
| Msa0660960 | MtrunA17_Chr4g0033721 | 76.452 | 310 | 72 | 1 | 56 | 365 | 7 | 315 | 1.32e-176 | 493 |
| Msa0660960 | MtrunA17_Chr5g0428611 | 40.840 | 262 | 141 | 7 | 112 | 365 | 1 | 256 | 1.48e-57 | 187 |
| Msa0660960 | MtrunA17_Chr2g0313641 | 31.818 | 176 | 103 | 7 | 121 | 282 | 56 | 228 | 5.03e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660960 | AT1G06130.2 | 71.299 | 331 | 92 | 2 | 35 | 365 | 1 | 328 | 0.0 | 504 |
| Msa0660960 | AT1G06130.1 | 71.084 | 332 | 92 | 3 | 35 | 365 | 1 | 329 | 7.79e-179 | 499 |
| Msa0660960 | AT2G31350.2 | 71.299 | 331 | 87 | 4 | 35 | 365 | 1 | 323 | 2.45e-175 | 490 |
| Msa0660960 | AT2G31350.1 | 71.299 | 331 | 88 | 4 | 35 | 365 | 1 | 324 | 2.65e-175 | 490 |
| Msa0660960 | AT2G43430.1 | 67.879 | 330 | 104 | 2 | 37 | 365 | 3 | 331 | 1.92e-166 | 468 |
| Msa0660960 | AT2G43430.2 | 68.269 | 312 | 98 | 1 | 54 | 365 | 3 | 313 | 1.69e-160 | 452 |
| Msa0660960 | AT2G43430.3 | 70.035 | 287 | 85 | 1 | 79 | 365 | 1 | 286 | 5.79e-149 | 422 |
| Msa0660960 | AT2G31350.3 | 71.200 | 250 | 65 | 4 | 35 | 284 | 1 | 243 | 2.93e-127 | 365 |
| Msa0660960 | AT3G10850.1 | 39.695 | 262 | 144 | 7 | 112 | 365 | 1 | 256 | 1.82e-58 | 190 |
Find 124 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTACTTTCCGGGATC+TGG | 0.175790 | 4_3:-72082853 | Msa0660960:CDS |
| GTATATATGTTTATCATTCT+TGG | 0.226183 | 4_3:-72081225 | Msa0660960:three_prime_UTR |
| CCACATCAGCTTCTACTTTC+CGG | 0.270037 | 4_3:-72082860 | Msa0660960:CDS |
| CTGGAATGTTTAACGATTGC+CGG | 0.288512 | 4_3:+72081608 | None:intergenic |
| AAATAGAAAAGTATATAAAA+AGG | 0.306392 | 4_3:-72085246 | None:intergenic |
| TTTGAGTTCATTCTTGTTCT+CGG | 0.306933 | 4_3:-72081278 | Msa0660960:three_prime_UTR |
| CCGTATCAATATCATGTAAA+AGG | 0.307674 | 4_3:+72083992 | None:intergenic |
| TATCATTCTCATATTGCTAT+TGG | 0.314958 | 4_3:+72081465 | None:intergenic |
| AAGGAAAGAGAGAGAAGAAA+TGG | 0.315953 | 4_3:+72085120 | None:intergenic |
| CACATCAGCTTCTACTTTCC+GGG | 0.337719 | 4_3:-72082859 | Msa0660960:CDS |
| TTGAAGCTTTAGAAAGCATT+TGG | 0.357702 | 4_3:+72085093 | None:intergenic |
| GTAGAATTAAAAGCAAGATA+TGG | 0.359608 | 4_3:-72083847 | Msa0660960:CDS |
| CAACCAAACAGTAAAATTAG+TGG | 0.367910 | 4_3:-72085147 | Msa0660960:CDS |
| CTTATGGTCGAAGGCTTGTT+TGG | 0.372291 | 4_3:+72081382 | None:intergenic |
| CTGCAATGAGGAAGACATAT+TGG | 0.381228 | 4_3:+72084444 | None:intergenic |
| CAGTGTCGTGTCCGGGTCAA+TGG | 0.381653 | 4_3:+72081491 | None:intergenic |
| CATGTTGCATTACAGGTGAT+TGG | 0.382874 | 4_3:-72083089 | Msa0660960:intron |
| GATCGAAGTTCCTTGTTTCC+AGG | 0.387556 | 4_3:+72081870 | None:intergenic |
| TAGAATTAAAAGCAAGATAT+GGG | 0.393374 | 4_3:-72083846 | Msa0660960:CDS |
| CTACGTAAAACCAACACTTA+TGG | 0.405208 | 4_3:+72081366 | None:intergenic |
| TTTAGAAAAGGAATTCTGTA+TGG | 0.405567 | 4_3:-72084553 | Msa0660960:CDS |
| GCTTCTACTTTCCGGGATCT+GGG | 0.408664 | 4_3:-72082852 | Msa0660960:CDS |
| ACCGACAACAAAAGGATTCC+TGG | 0.413397 | 4_3:-72083059 | Msa0660960:CDS |
| AGCAGTAACTGTGGCTCTAT+TGG | 0.416104 | 4_3:-72081115 | Msa0660960:three_prime_UTR |
| AAACAAAGTTGCCTCACATT+AGG | 0.419544 | 4_3:+72084574 | None:intergenic |
| TTGAGTTCATTCTTGTTCTC+GGG | 0.423353 | 4_3:-72081277 | Msa0660960:three_prime_UTR |
| TCTGCATCATCTGCTGTGGC+TGG | 0.424261 | 4_3:+72081589 | None:intergenic |
| TTACAGATGCAATCTTCTCT+TGG | 0.426089 | 4_3:-72082077 | Msa0660960:intron |
| TTCCTCATTGCAGATTGAAT+TGG | 0.430159 | 4_3:-72084434 | Msa0660960:intron |
| TGAGAGCTGGGTTTAGTGTC+TGG | 0.445616 | 4_3:-72084597 | Msa0660960:CDS |
| CATATAAAACGCTGCGTGGA+GGG | 0.449951 | 4_3:-72084507 | Msa0660960:CDS |
| TCATGCGGCAAACTCTTTGA+AGG | 0.453311 | 4_3:-72082796 | Msa0660960:CDS |
| AGGAAAGAGAGAGAAGAAAT+GGG | 0.454889 | 4_3:+72085121 | None:intergenic |
| GGTGATAAGTGGATGTTTGC+TGG | 0.459231 | 4_3:-72083014 | Msa0660960:CDS |
| ATTGGTGTCAGTGTCGTGTC+CGG | 0.459621 | 4_3:+72081483 | None:intergenic |
| AGCAGATGATGCAGAAGCCC+TGG | 0.460161 | 4_3:-72081581 | Msa0660960:CDS |
| TGTATGTTTGCAGAATAATA+CGG | 0.466239 | 4_3:-72081913 | Msa0660960:intron |
| GTACATCCAACGCACAAATC+CGG | 0.468577 | 4_3:-72081627 | Msa0660960:CDS |
| GTGGCTTCCCTTCGAAGTAA+AGG | 0.472139 | 4_3:-72081834 | Msa0660960:CDS |
| GTTCAGCAACCGACAACAAA+AGG | 0.473223 | 4_3:-72083067 | Msa0660960:CDS |
| TTCATTGACCTACTCTATAC+AGG | 0.474441 | 4_3:+72081521 | None:intergenic |
| ACTTATCACCGTCATTCAAA+TGG | 0.477333 | 4_3:+72083027 | None:intergenic |
| TTCGCATTGAGGCTCGAACC+TGG | 0.481254 | 4_3:-72081888 | Msa0660960:CDS |
| TGAAGAAGAAGGGGTGGTGG+TGG | 0.492021 | 4_3:-72085196 | Msa0660960:CDS |
| TTGCTCAATGCATCTATGAC+AGG | 0.496375 | 4_3:+72083934 | None:intergenic |
| GATATTGATACGGGCACAGT+TGG | 0.506415 | 4_3:-72083982 | Msa0660960:CDS |
| TTAGAAAGCATTTGGAAGGA+AGG | 0.508637 | 4_3:+72085101 | None:intergenic |
| GATTCCGACCACACTGAAGA+TGG | 0.510448 | 4_3:-72081674 | Msa0660960:CDS |
| TTGCTTGTCGGATGATACCC+AGG | 0.511740 | 4_3:+72081563 | None:intergenic |
| TGTCAGTGTCGTGTCGGTGT+TGG | 0.513449 | 4_3:-72081425 | Msa0660960:three_prime_UTR |
| CAGTATATACTTGTATCGTC+TGG | 0.514843 | 4_3:+72082038 | None:intergenic |
| GTCGCTCACTTAGAGTGGCT+CGG | 0.516030 | 4_3:-72084480 | Msa0660960:CDS |
| TTGGTGTCAGTGTCGTGTCC+GGG | 0.518088 | 4_3:+72081484 | None:intergenic |
| AAATGTGTTGATGAAGAAGA+AGG | 0.521915 | 4_3:-72085207 | Msa0660960:exon |
| CATCGAGAGACAAATCTACA+AGG | 0.524234 | 4_3:+72081168 | None:intergenic |
| CGATTGCCGGATTTGTGCGT+TGG | 0.527139 | 4_3:+72081621 | None:intergenic |
| AAGGAACTTCGATCCTATGC+TGG | 0.529395 | 4_3:-72081861 | Msa0660960:CDS |
| AAGCATAAATATTCCACAGA+TGG | 0.536492 | 4_3:+72081334 | None:intergenic |
| TGTCCATTACTTGCACCTCA+TGG | 0.537197 | 4_3:+72082991 | None:intergenic |
| GGGCAAGCCTTTACTTCGAA+GGG | 0.545894 | 4_3:+72081827 | None:intergenic |
| TAAAGACTCCTGTATAGAGT+AGG | 0.546403 | 4_3:-72081529 | Msa0660960:three_prime_UTR |
| GGAAGCCACGTGGCCAGCAT+AGG | 0.547492 | 4_3:+72081848 | None:intergenic |
| TGGGCAAGCCTTTACTTCGA+AGG | 0.550848 | 4_3:+72081826 | None:intergenic |
| GGCTTCTGCATCATCTGCTG+TGG | 0.554650 | 4_3:+72081585 | None:intergenic |
| GGTATGCATAATTGTCACTC+AGG | 0.558560 | 4_3:+72084013 | None:intergenic |
| TTCAAATGGATATCAATGCC+AGG | 0.559408 | 4_3:+72083041 | None:intergenic |
| ACTCTTTGAAGGAACCCCTC+AGG | 0.563265 | 4_3:-72082785 | Msa0660960:CDS |
| TGATGAAGAAGAAGGGGTGG+TGG | 0.565711 | 4_3:-72085199 | Msa0660960:CDS |
| GACCACACTGAAGATGGAAA+AGG | 0.569691 | 4_3:-72081668 | Msa0660960:CDS |
| AATGTGTTGATGAAGAAGAA+GGG | 0.575161 | 4_3:-72085206 | Msa0660960:exon |
| GGGTATCATCCGACAAGCAA+AGG | 0.576116 | 4_3:-72081560 | Msa0660960:CDS |
| GGCTAGTCGCTCACTTAGAG+TGG | 0.577501 | 4_3:-72084485 | Msa0660960:CDS |
| AGGTAAAACCAACCTCCTGA+GGG | 0.580185 | 4_3:+72082770 | None:intergenic |
| CAGGTAAAACCAACCTCCTG+AGG | 0.581515 | 4_3:+72082769 | None:intergenic |
| GCGTTGGATGTACGAAGGAA+TGG | 0.582552 | 4_3:+72081637 | None:intergenic |
| CTTCTACTTTCCGGGATCTG+GGG | 0.582769 | 4_3:-72082851 | Msa0660960:CDS |
| ATATAAAACGCTGCGTGGAG+GGG | 0.583237 | 4_3:-72084506 | Msa0660960:CDS |
| AGCTTTAGAAAGCATTTGGA+AGG | 0.583539 | 4_3:+72085097 | None:intergenic |
| CCATATAAAACGCTGCGTGG+AGG | 0.583820 | 4_3:-72084508 | Msa0660960:CDS |
| TGCTTGTCGGATGATACCCA+GGG | 0.585286 | 4_3:+72081564 | None:intergenic |
| ATTTGAATGACGGTGATAAG+TGG | 0.585793 | 4_3:-72083025 | Msa0660960:CDS |
| GAGGCTCGAACCTGGAAACA+AGG | 0.587160 | 4_3:-72081880 | Msa0660960:CDS |
| AAAAGCAAGATATGGGGCAA+AGG | 0.588467 | 4_3:-72083839 | Msa0660960:intron |
| CACCAATTCAATCTGCAATG+AGG | 0.598023 | 4_3:+72084432 | None:intergenic |
| AAGCCTTCGACCATAAGTGT+TGG | 0.604404 | 4_3:-72081376 | Msa0660960:three_prime_UTR |
| CACCAGTGTGATCATGATGA+TGG | 0.604627 | 4_3:+72083875 | None:intergenic |
| ATGACAGGCGTAGCTTCAGA+AGG | 0.605200 | 4_3:+72083949 | None:intergenic |
| GCAGATGATGCAGAAGCCCT+GGG | 0.608833 | 4_3:-72081580 | Msa0660960:CDS |
| GAATTCTGTATGGATTTATG+CGG | 0.611448 | 4_3:-72084543 | Msa0660960:CDS |
| CCGGAAAGTAGAAGCTGATG+TGG | 0.611653 | 4_3:+72082860 | None:intergenic |
| ATTGATATCCATTTGAATGA+CGG | 0.612448 | 4_3:-72083035 | Msa0660960:CDS |
| ATGTGACCTCGAGTGTGACC+AGG | 0.616405 | 4_3:+72082966 | None:intergenic |
| ATCGAGAGACAAATCTACAA+GGG | 0.619946 | 4_3:+72081169 | None:intergenic |
| CTTTGAAGGAACCCCTCAGG+AGG | 0.623384 | 4_3:-72082782 | Msa0660960:intron |
| GCATAATTGTCACTCAGGCA+AGG | 0.623799 | 4_3:+72084018 | None:intergenic |
| AAACCAACACTTATGGTCGA+AGG | 0.626558 | 4_3:+72081373 | None:intergenic |
| CACATGTGTCAGTGTCGTGT+CGG | 0.630652 | 4_3:-72081431 | Msa0660960:three_prime_UTR |
| ATAATACGGACTTCGCATTG+AGG | 0.642456 | 4_3:-72081899 | Msa0660960:CDS |
| TTAGTGTCTGGCCTAATGTG+AGG | 0.647103 | 4_3:-72084585 | Msa0660960:CDS |
| CATCATCATGATCACACTGG+TGG | 0.648943 | 4_3:-72083874 | Msa0660960:CDS |
| TGGCCATGAGGTGCAAGTAA+TGG | 0.649042 | 4_3:-72082994 | Msa0660960:CDS |
| ATGTGTTGATGAAGAAGAAG+GGG | 0.649395 | 4_3:-72085205 | Msa0660960:exon |
| GACACACCTGGTCACACTCG+AGG | 0.650356 | 4_3:-72082972 | Msa0660960:intron |
| GTAGTTAATGAATCCATCTG+TGG | 0.650438 | 4_3:-72081347 | Msa0660960:three_prime_UTR |
| TGAACTATGAACCATTGACC+CGG | 0.652621 | 4_3:-72081502 | Msa0660960:three_prime_UTR |
| ACGCCATATAAAACGCTGCG+TGG | 0.653296 | 4_3:-72084511 | Msa0660960:CDS |
| TCGAAGTAAAGGCTTGCCCA+CGG | 0.654918 | 4_3:-72081823 | Msa0660960:intron |
| AGAATTAAAAGCAAGATATG+GGG | 0.659094 | 4_3:-72083845 | Msa0660960:CDS |
| ACTTTGTTCAGCTTGTCATG+CGG | 0.663144 | 4_3:-72082811 | Msa0660960:CDS |
| TGTTGGATACTAACACATGT+CGG | 0.666015 | 4_3:-72081408 | Msa0660960:three_prime_UTR |
| AACATATATACACTACCATG+AGG | 0.666750 | 4_3:+72081237 | None:intergenic |
| GACGATACAAGTATATACTG+TGG | 0.667417 | 4_3:-72082035 | Msa0660960:CDS |
| CACCATCATCATGATCACAC+TGG | 0.670155 | 4_3:-72083877 | Msa0660960:CDS |
| TCGAGAGACAAATCTACAAG+GGG | 0.670813 | 4_3:+72081170 | None:intergenic |
| TTTGTGCGTTGGATGTACGA+AGG | 0.675267 | 4_3:+72081632 | None:intergenic |
| ACATATATACACTACCATGA+GGG | 0.677099 | 4_3:+72081238 | None:intergenic |
| TGTTGATGAAGAAGAAGGGG+TGG | 0.677937 | 4_3:-72085202 | Msa0660960:exon |
| GTGCAAGTAATGGACACACC+TGG | 0.681660 | 4_3:-72082984 | Msa0660960:CDS |
| CTGTGGACACGAGTACACAT+TGG | 0.683875 | 4_3:-72082018 | Msa0660960:intron |
| TCGATCCTATGCTGGCCACG+TGG | 0.686304 | 4_3:-72081853 | Msa0660960:CDS |
| TACTTCGAAGGGAAGCCACG+TGG | 0.689024 | 4_3:+72081838 | None:intergenic |
| GTGGATGTTTGCTGGCCATG+AGG | 0.690608 | 4_3:-72083006 | Msa0660960:CDS |
| ATACGTAAGAGCAGTAACTG+TGG | 0.714134 | 4_3:-72081124 | Msa0660960:three_prime_UTR |
| GGTAAAACCAACCTCCTGAG+GGG | 0.722369 | 4_3:+72082771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTGATAATTATTTGATT+TGG | - | chr4_3:72081510-72081529 | Msa0660960:three_prime_UTR | 15.0% |
| !!! | ATTATAATAACTTGTTCTAT+AGG | - | chr4_3:72081627-72081646 | Msa0660960:CDS | 15.0% |
| !!! | ATGATTATTCTTTGTTTTTT+AGG | - | chr4_3:72081732-72081751 | Msa0660960:intron | 15.0% |
| !!! | AATTTTTTAGTAAACTGTTA+AGG | - | chr4_3:72081957-72081976 | Msa0660960:intron | 15.0% |
| !! | CTATAGTAAAAGATAAAATA+AGG | + | chr4_3:72082143-72082162 | None:intergenic | 15.0% |
| !!! | CACATTTTTTTGAAATAATT+AGG | - | chr4_3:72082309-72082328 | Msa0660960:intron | 15.0% |
| !!! | TATTGACATTTTGATATATT+TGG | - | chr4_3:72083115-72083134 | Msa0660960:intron | 15.0% |
| !!! | TTTAATGAGCATAATTTTTA+GGG | - | chr4_3:72083781-72083800 | Msa0660960:intron | 15.0% |
| !!! | TTTCAATTTTTTTCGTTGTT+AGG | - | chr4_3:72081351-72081370 | Msa0660960:three_prime_UTR | 20.0% |
| !!! | TAGTGTTGATAATTTGATAA+TGG | - | chr4_3:72081689-72081708 | Msa0660960:intron | 20.0% |
| !! | TAGAATTAAAAGCAAGATAT+GGG | - | chr4_3:72082506-72082525 | Msa0660960:intron | 20.0% |
| !! | AAACGAAGAAAAAAATACAT+AGG | + | chr4_3:72082559-72082578 | None:intergenic | 20.0% |
| !! | AAGGATTAAAATACACAAAT+TGG | - | chr4_3:72082701-72082720 | Msa0660960:intron | 20.0% |
| !! | TCATACCTAACAATAATATT+TGG | - | chr4_3:72083058-72083077 | Msa0660960:CDS | 20.0% |
| !! | ATTATGCTCATTAAAGATAT+TGG | + | chr4_3:72083776-72083795 | None:intergenic | 20.0% |
| !!! | CTTTAATGAGCATAATTTTT+AGG | - | chr4_3:72083780-72083799 | Msa0660960:intron | 20.0% |
| !! | GTATATATGTTTATCATTCT+TGG | - | chr4_3:72085127-72085146 | Msa0660960:CDS | 20.0% |
| !! | CATTTAGAATTGCTTAATTC+TGG | - | chr4_3:72081545-72081564 | Msa0660960:exon | 25.0% |
| !! | ACTTATTACATTGACTGAAA+AGG | - | chr4_3:72081665-72081684 | Msa0660960:CDS | 25.0% |
| ! | TTTAGAAAAGGAATTCTGTA+TGG | - | chr4_3:72081799-72081818 | Msa0660960:intron | 25.0% |
| !! | CCTTTTACATGATATTGATA+CGG | - | chr4_3:72082360-72082379 | Msa0660960:intron | 25.0% |
| !! | CTTTTACATGATATTGATAC+GGG | - | chr4_3:72082361-72082380 | Msa0660960:intron | 25.0% |
| ! | GTAGAATTAAAAGCAAGATA+TGG | - | chr4_3:72082505-72082524 | Msa0660960:intron | 25.0% |
| ! | AGAATTAAAAGCAAGATATG+GGG | - | chr4_3:72082507-72082526 | Msa0660960:intron | 25.0% |
| ! | GTGTTTCAAATACAATTCAT+TGG | - | chr4_3:72082597-72082616 | Msa0660960:intron | 25.0% |
| ! | GCTTACAGAATATAGAAAAA+AGG | - | chr4_3:72082682-72082701 | Msa0660960:intron | 25.0% |
| !! | GAAAATTATTTGGTTAGTTG+TGG | + | chr4_3:72082826-72082845 | None:intergenic | 25.0% |
| !!! | GATCTTTTGGGAAAATTATT+TGG | + | chr4_3:72082836-72082855 | None:intergenic | 25.0% |
| ! | CAAAGAGTAAAATTAGAGAA+GGG | + | chr4_3:72082884-72082903 | None:intergenic | 25.0% |
| ! | TGTTGCCAAATATTATTGTT+AGG | + | chr4_3:72083066-72083085 | None:intergenic | 25.0% |
| !!! | ATTGATCGTATAGTTTTACT+TGG | - | chr4_3:72083175-72083194 | Msa0660960:intron | 25.0% |
| ! | TTTCTGTATATTATTATGCC+TGG | - | chr4_3:72083205-72083224 | Msa0660960:intron | 25.0% |
| ! | TATATTATTATGCCTGGTTA+TGG | - | chr4_3:72083211-72083230 | Msa0660960:intron | 25.0% |
| ! | ATTGATATCCATTTGAATGA+CGG | - | chr4_3:72083317-72083336 | Msa0660960:intron | 25.0% |
| ! | GTTTGACAATAATGCAAATA+AGG | + | chr4_3:72083417-72083436 | None:intergenic | 25.0% |
| ! | TGTTTATTTATACTGTAAGC+AGG | - | chr4_3:72083469-72083488 | Msa0660960:intron | 25.0% |
| !!! | ATAATTTTTAGGGCTTGTTT+GGG | - | chr4_3:72083791-72083810 | Msa0660960:intron | 25.0% |
| ! | TAAAAATGACTGAGTTCATT+CGG | - | chr4_3:72084021-72084040 | Msa0660960:CDS | 25.0% |
| ! | ATTTACTTGCATTTACAACT+AGG | + | chr4_3:72084174-72084193 | None:intergenic | 25.0% |
| ! | TGTATGTTTGCAGAATAATA+CGG | - | chr4_3:72084439-72084458 | Msa0660960:CDS | 25.0% |
| ! | ACTACTCATAAAGAATAACA+AGG | + | chr4_3:72084575-72084594 | None:intergenic | 25.0% |
| !! | ATGTGTCACTAATATTTCTT+TGG | - | chr4_3:72084596-72084615 | Msa0660960:CDS | 25.0% |
| ! | ACTCTTTAGATAAAAGCAAA+AGG | + | chr4_3:72084642-72084661 | None:intergenic | 25.0% |
| ! | TCTAAAGAGTAAGTATTCTT+TGG | - | chr4_3:72084652-72084671 | Msa0660960:intron | 25.0% |
| ! | CTAAAGAGTAAGTATTCTTT+GGG | - | chr4_3:72084653-72084672 | Msa0660960:intron | 25.0% |
| ! | AAAAATTATCCTTTGCTTGT+CGG | + | chr4_3:72084804-72084823 | None:intergenic | 25.0% |
| ! | TATCATTCTCATATTGCTAT+TGG | + | chr4_3:72084890-72084909 | None:intergenic | 25.0% |
| ! | AAATGTGTTGATGAAGAAGA+AGG | - | chr4_3:72081145-72081164 | Msa0660960:three_prime_UTR | 30.0% |
| ! | AATGTGTTGATGAAGAAGAA+GGG | - | chr4_3:72081146-72081165 | Msa0660960:three_prime_UTR | 30.0% |
| CAACCAAACAGTAAAATTAG+TGG | - | chr4_3:72081205-72081224 | Msa0660960:three_prime_UTR | 30.0% | |
| ! | TTGCCACTAATTTTACTGTT+TGG | + | chr4_3:72081211-72081230 | None:intergenic | 30.0% |
| !! | TTGAAGCTTTAGAAAGCATT+TGG | + | chr4_3:72081262-72081281 | None:intergenic | 30.0% |
| AAAAAAAAAAAGACGAACCC+TGG | + | chr4_3:72081315-72081334 | None:intergenic | 30.0% | |
| !!! | AGGCAACTTTGTTTTAGAAA+AGG | - | chr4_3:72081787-72081806 | Msa0660960:intron | 30.0% |
| GAATTCTGTATGGATTTATG+CGG | - | chr4_3:72081809-72081828 | Msa0660960:intron | 30.0% | |
| GGTGTAATTTGATTATCTTC+TGG | - | chr4_3:72081978-72081997 | Msa0660960:intron | 30.0% | |
| !!! | ATAAGTTTTGTGAGAGTGTT+TGG | - | chr4_3:72082002-72082021 | Msa0660960:intron | 30.0% |
| !!! | TAAGTTTTGTGAGAGTGTTT+GGG | - | chr4_3:72082003-72082022 | Msa0660960:intron | 30.0% |
| AATAAGCTGTAAATCCAAAC+TGG | - | chr4_3:72082217-72082236 | Msa0660960:intron | 30.0% | |
| ATAAGCTGTAAATCCAAACT+GGG | - | chr4_3:72082218-72082237 | Msa0660960:intron | 30.0% | |
| CCGTATCAATATCATGTAAA+AGG | + | chr4_3:72082363-72082382 | None:intergenic | 30.0% | |
| ATGCATTGAGCAAGAAAAAT+CGG | - | chr4_3:72082428-72082447 | Msa0660960:intron | 30.0% | |
| TAAAGAGCAAATTAGAAGTG+AGG | - | chr4_3:72082620-72082639 | Msa0660960:intron | 30.0% | |
| TTTCTATATTCTGTAAGCTG+CGG | + | chr4_3:72082680-72082699 | None:intergenic | 30.0% | |
| CCAAAGAGTAAAATTAGAGA+AGG | + | chr4_3:72082885-72082904 | None:intergenic | 30.0% | |
| ! | CCTTCTCTAATTTTACTCTT+TGG | - | chr4_3:72082882-72082901 | Msa0660960:intron | 30.0% |
| GAAGTTGTTGCAAATTTGAT+TGG | - | chr4_3:72083086-72083105 | Msa0660960:intron | 30.0% | |
| TTTCAAATTTCAAGGACTTC+TGG | + | chr4_3:72083696-72083715 | None:intergenic | 30.0% | |
| !!! | CATAATTTTTAGGGCTTGTT+TGG | - | chr4_3:72083790-72083809 | Msa0660960:intron | 30.0% |
| TCGTTGAATATGTCTTCTTA+AGG | - | chr4_3:72084056-72084075 | Msa0660960:intron | 30.0% | |
| TATGTATGTCGAAAAATGCT+TGG | - | chr4_3:72084095-72084114 | Msa0660960:intron | 30.0% | |
| AAAATGTTATTGCTGATGCA+AGG | - | chr4_3:72084148-72084167 | Msa0660960:intron | 30.0% | |
| !! | TACAAAAGTACTAGAGTCAA+TGG | + | chr4_3:72084423-72084442 | None:intergenic | 30.0% |
| AAGCATAAATATTCCACAGA+TGG | + | chr4_3:72085021-72085040 | None:intergenic | 30.0% | |
| ! | TTTGAGTTCATTCTTGTTCT+CGG | - | chr4_3:72085074-72085093 | Msa0660960:CDS | 30.0% |
| TTGTTCTCGGGTTTAAAAAT+AGG | - | chr4_3:72085087-72085106 | Msa0660960:CDS | 30.0% | |
| TAAAAATAGGTATTCCCTCA+TGG | - | chr4_3:72085100-72085119 | Msa0660960:CDS | 30.0% | |
| ACATATATACACTACCATGA+GGG | + | chr4_3:72085117-72085136 | None:intergenic | 30.0% | |
| AACATATATACACTACCATG+AGG | + | chr4_3:72085118-72085137 | None:intergenic | 30.0% | |
| TAAAAAGGAGAGAGAGAAAG+AGG | - | chr4_3:72081121-72081140 | Msa0660960:three_prime_UTR | 35.0% | |
| ! | ATGTGTTGATGAAGAAGAAG+GGG | - | chr4_3:72081147-72081166 | Msa0660960:three_prime_UTR | 35.0% |
| AGGAAAGAGAGAGAAGAAAT+GGG | + | chr4_3:72081234-72081253 | None:intergenic | 35.0% | |
| AAGGAAAGAGAGAGAAGAAA+TGG | + | chr4_3:72081235-72081254 | None:intergenic | 35.0% | |
| !! | TTAGAAAGCATTTGGAAGGA+AGG | + | chr4_3:72081254-72081273 | None:intergenic | 35.0% |
| !! | AGCTTTAGAAAGCATTTGGA+AGG | + | chr4_3:72081258-72081277 | None:intergenic | 35.0% |
| ATCTTGAAGCGTGATTATGA+AGG | - | chr4_3:72081378-72081397 | Msa0660960:three_prime_UTR | 35.0% | |
| !!! | TTTGTTTTTTAGGTGAGAGC+TGG | - | chr4_3:72081742-72081761 | Msa0660960:intron | 35.0% |
| !!! | TTGTTTTTTAGGTGAGAGCT+GGG | - | chr4_3:72081743-72081762 | Msa0660960:intron | 35.0% |
| AAACAAAGTTGCCTCACATT+AGG | + | chr4_3:72081781-72081800 | None:intergenic | 35.0% | |
| TTCCTCATTGCAGATTGAAT+TGG | - | chr4_3:72081918-72081937 | Msa0660960:intron | 35.0% | |
| TGATAACATAACCGCAGATT+AGG | + | chr4_3:72082291-72082310 | None:intergenic | 35.0% | |
| AAGCGTATGATAACTGCAAA+AGG | - | chr4_3:72082748-72082767 | Msa0660960:intron | 35.0% | |
| GATGAATATCCTAATGCTCA+CGG | - | chr4_3:72082770-72082789 | Msa0660960:intron | 35.0% | |
| ! | TAGTGAAAACGGGATCTTTT+GGG | + | chr4_3:72082848-72082867 | None:intergenic | 35.0% |
| ! | ATAGTGAAAACGGGATCTTT+TGG | + | chr4_3:72082849-72082868 | None:intergenic | 35.0% |
| TGACTGAAGGATAGTGAAAA+CGG | + | chr4_3:72082859-72082878 | None:intergenic | 35.0% | |
| ATGTGTAGACCCATATTTCT+AGG | + | chr4_3:72082923-72082942 | None:intergenic | 35.0% | |
| TGGGTCTACACATACATATA+TGG | - | chr4_3:72082930-72082949 | Msa0660960:intron | 35.0% | |
| GAGAAAATGCTAAGTAGACA+AGG | + | chr4_3:72083040-72083059 | None:intergenic | 35.0% | |
| TTCAAATGGATATCAATGCC+AGG | + | chr4_3:72083314-72083333 | None:intergenic | 35.0% | |
| ACTTATCACCGTCATTCAAA+TGG | + | chr4_3:72083328-72083347 | None:intergenic | 35.0% | |
| ATTTGAATGACGGTGATAAG+TGG | - | chr4_3:72083327-72083346 | Msa0660960:intron | 35.0% | |
| AAAAAGAACAAGTTAGTGCC+AGG | + | chr4_3:72083605-72083624 | None:intergenic | 35.0% | |
| ! | GCGGGTATTTTCAAATTTCA+AGG | + | chr4_3:72083704-72083723 | None:intergenic | 35.0% |
| AATTTGAAAATACCCGCACA+AGG | - | chr4_3:72083707-72083726 | Msa0660960:intron | 35.0% | |
| ATTTGAAAATACCCGCACAA+GGG | - | chr4_3:72083708-72083727 | Msa0660960:intron | 35.0% | |
| ATTTAAATTGCAGCCAAACG+AGG | - | chr4_3:72083738-72083757 | Msa0660960:intron | 35.0% | |
| TCGCTGTAATAATATGAGAG+TGG | - | chr4_3:72083814-72083833 | Msa0660960:intron | 35.0% | |
| CGCTGTAATAATATGAGAGT+GGG | - | chr4_3:72083815-72083834 | Msa0660960:intron | 35.0% | |
| TACACTAAGATTGCAGACTT+GGG | + | chr4_3:72083895-72083914 | None:intergenic | 35.0% | |
| GTTGTCAAGTCAGTTATACT+TGG | - | chr4_3:72084202-72084221 | Msa0660960:intron | 35.0% | |
| ACATCCCACATCTTCAATTA+TGG | - | chr4_3:72084237-72084256 | Msa0660960:intron | 35.0% | |
| CTCTCCATAATTGAAGATGT+GGG | + | chr4_3:72084244-72084263 | None:intergenic | 35.0% | |
| ACTCTCCATAATTGAAGATG+TGG | + | chr4_3:72084245-72084264 | None:intergenic | 35.0% | |
| AGAAGATTGCATCTGTAACA+GGG | + | chr4_3:72084273-72084292 | None:intergenic | 35.0% | |
| TTACAGATGCAATCTTCTCT+TGG | - | chr4_3:72084275-72084294 | Msa0660960:intron | 35.0% | |
| CAGTATATACTTGTATCGTC+TGG | + | chr4_3:72084317-72084336 | None:intergenic | 35.0% | |
| GACGATACAAGTATATACTG+TGG | - | chr4_3:72084317-72084336 | Msa0660960:intron | 35.0% | |
| AAACAAAGCAAAGAACACTG+AGG | + | chr4_3:72084380-72084399 | None:intergenic | 35.0% | |
| AAAAGGCCAATGATTGAAAC+AGG | + | chr4_3:72084625-72084644 | None:intergenic | 35.0% | |
| TAAAGACTCCTGTATAGAGT+AGG | - | chr4_3:72084823-72084842 | Msa0660960:intron | 35.0% | |
| TTCATTGACCTACTCTATAC+AGG | + | chr4_3:72084834-72084853 | None:intergenic | 35.0% | |
| TGTTGGATACTAACACATGT+CGG | - | chr4_3:72084944-72084963 | Msa0660960:intron | 35.0% | |
| CTACGTAAAACCAACACTTA+TGG | + | chr4_3:72084989-72085008 | None:intergenic | 35.0% | |
| GTAGTTAATGAATCCATCTG+TGG | - | chr4_3:72085005-72085024 | Msa0660960:intron | 35.0% | |
| TTGAGTTCATTCTTGTTCTC+GGG | - | chr4_3:72085075-72085094 | Msa0660960:CDS | 35.0% | |
| ATCGAGAGACAAATCTACAA+GGG | + | chr4_3:72085186-72085205 | None:intergenic | 35.0% | |
| CTGCAATGAGGAAGACATAT+TGG | + | chr4_3:72081911-72081930 | None:intergenic | 40.0% | |
| CACCAATTCAATCTGCAATG+AGG | + | chr4_3:72081923-72081942 | None:intergenic | 40.0% | |
| CTAAGTTTCCCAAGCTGATA+GGG | - | chr4_3:72082242-72082261 | Msa0660960:intron | 40.0% | |
| TTCAGAAACCCTATCAGCTT+GGG | + | chr4_3:72082253-72082272 | None:intergenic | 40.0% | |
| TATGCTGAAAGCCTAATCTG+CGG | - | chr4_3:72082277-72082296 | Msa0660960:intron | 40.0% | |
| GGTATGCATAATTGTCACTC+AGG | + | chr4_3:72082342-72082361 | None:intergenic | 40.0% | |
| TTGCTCAATGCATCTATGAC+AGG | + | chr4_3:72082421-72082440 | None:intergenic | 40.0% | |
| AAAAGCAAGATATGGGGCAA+AGG | - | chr4_3:72082513-72082532 | Msa0660960:intron | 40.0% | |
| GACTGAAGGATAGTGAAAAC+GGG | + | chr4_3:72082858-72082877 | None:intergenic | 40.0% | |
| TTAGAGAAGGGAATGACTGA+AGG | + | chr4_3:72082872-72082891 | None:intergenic | 40.0% | |
| CTCGCTAACTATCATTTCTG+TGG | - | chr4_3:72082968-72082987 | Msa0660960:intron | 40.0% | |
| TTGTCAAGGGGAGAAAGAAA+GGG | + | chr4_3:72082996-72083015 | None:intergenic | 40.0% | |
| ATTATGCCTGGTTATGGCAA+AGG | - | chr4_3:72083217-72083236 | Msa0660960:intron | 40.0% | |
| TTATGCCTGGTTATGGCAAA+GGG | - | chr4_3:72083218-72083237 | Msa0660960:intron | 40.0% | |
| CCTGTAATGCAACATGAGAA+GGG | + | chr4_3:72083259-72083278 | None:intergenic | 40.0% | |
| ACCTGTAATGCAACATGAGA+AGG | + | chr4_3:72083260-72083279 | None:intergenic | 40.0% | |
| CATGTTGCATTACAGGTGAT+TGG | - | chr4_3:72083263-72083282 | Msa0660960:intron | 40.0% | |
| ! | TGTCAAACCTTCTTGTTGTG+TGG | - | chr4_3:72083429-72083448 | Msa0660960:intron | 40.0% |
| ACTTTGTTCAGCTTGTCATG+CGG | - | chr4_3:72083541-72083560 | Msa0660960:intron | 40.0% | |
| TTTCAAGGACTTCTGGCAAA+GGG | + | chr4_3:72083689-72083708 | None:intergenic | 40.0% | |
| ATTTCAAGGACTTCTGGCAA+AGG | + | chr4_3:72083690-72083709 | None:intergenic | 40.0% | |
| TAAATCACAAGTCCCTTGTG+CGG | + | chr4_3:72083723-72083742 | None:intergenic | 40.0% | |
| ACACTAAGATTGCAGACTTG+GGG | + | chr4_3:72083894-72083913 | None:intergenic | 40.0% | |
| GTACACTAAGATTGCAGACT+TGG | + | chr4_3:72083896-72083915 | None:intergenic | 40.0% | |
| TGCAATCTTAGTGTACGAGA+AGG | - | chr4_3:72083900-72083919 | Msa0660960:CDS | 40.0% | |
| GCAATCTTAGTGTACGAGAA+GGG | - | chr4_3:72083901-72083920 | Msa0660960:CDS | 40.0% | |
| ! | TCATACACGTGCTGATCAAA+GGG | + | chr4_3:72083939-72083958 | None:intergenic | 40.0% |
| ! | TTCATACACGTGCTGATCAA+AGG | + | chr4_3:72083940-72083959 | None:intergenic | 40.0% |
| ! | CACGTGTATGAAGTGTTCAA+TGG | - | chr4_3:72083948-72083967 | Msa0660960:CDS | 40.0% |
| GAGAAGATTGCATCTGTAAC+AGG | + | chr4_3:72084274-72084293 | None:intergenic | 40.0% | |
| AAGTACTAGAGTCAATGGCA+CGG | + | chr4_3:72084418-72084437 | None:intergenic | 40.0% | |
| ATAATACGGACTTCGCATTG+AGG | - | chr4_3:72084453-72084472 | Msa0660960:CDS | 40.0% | |
| TGGTAGCCTGTTTCAATCAT+TGG | - | chr4_3:72084616-72084635 | Msa0660960:intron | 40.0% | |
| ! | TTTTCCATCTTCAGTGTGGT+CGG | + | chr4_3:72084685-72084704 | None:intergenic | 40.0% |
| CTGGAATGTTTAACGATTGC+CGG | + | chr4_3:72084747-72084766 | None:intergenic | 40.0% | |
| TGAACTATGAACCATTGACC+CGG | - | chr4_3:72084850-72084869 | Msa0660960:intron | 40.0% | |
| AAACCAACACTTATGGTCGA+AGG | + | chr4_3:72084982-72085001 | None:intergenic | 40.0% | |
| TCGAGAGACAAATCTACAAG+GGG | + | chr4_3:72085185-72085204 | None:intergenic | 40.0% | |
| CATCGAGAGACAAATCTACA+AGG | + | chr4_3:72085187-72085206 | None:intergenic | 40.0% | |
| ATACGTAAGAGCAGTAACTG+TGG | - | chr4_3:72085228-72085247 | Msa0660960:five_prime_UTR | 40.0% | |
| ! | TGTTGATGAAGAAGAAGGGG+TGG | - | chr4_3:72081150-72081169 | Msa0660960:three_prime_UTR | 45.0% |
| ACAGGAAGAAAAAGCGGACA+TGG | + | chr4_3:72081291-72081310 | None:intergenic | 45.0% | |
| CCTGGAACAGGAAGAAAAAG+CGG | + | chr4_3:72081297-72081316 | None:intergenic | 45.0% | |
| !!! | CGCTTTTTCTTCCTGTTCCA+GGG | - | chr4_3:72081295-72081314 | Msa0660960:three_prime_UTR | 45.0% |
| AAAAAGACGAACCCTGGAAC+AGG | + | chr4_3:72081309-72081328 | None:intergenic | 45.0% | |
| TTAGTGTCTGGCCTAATGTG+AGG | - | chr4_3:72081767-72081786 | Msa0660960:intron | 45.0% | |
| CATATAAAACGCTGCGTGGA+GGG | - | chr4_3:72081845-72081864 | Msa0660960:CDS | 45.0% | |
| ATATAAAACGCTGCGTGGAG+GGG | - | chr4_3:72081846-72081865 | Msa0660960:CDS | 45.0% | |
| CAGATTGAATTGGTGAGAGC+AGG | - | chr4_3:72081928-72081947 | Msa0660960:intron | 45.0% | |
| CCTATCAGCTTGGGAAACTT+AGG | + | chr4_3:72082244-72082263 | None:intergenic | 45.0% | |
| CCTAAGTTTCCCAAGCTGAT+AGG | - | chr4_3:72082241-72082260 | Msa0660960:intron | 45.0% | |
| CTTCAGAAACCCTATCAGCT+TGG | + | chr4_3:72082254-72082273 | None:intergenic | 45.0% | |
| GCATAATTGTCACTCAGGCA+AGG | + | chr4_3:72082337-72082356 | None:intergenic | 45.0% | |
| GATATTGATACGGGCACAGT+TGG | - | chr4_3:72082370-72082389 | Msa0660960:intron | 45.0% | |
| CACCATCATCATGATCACAC+TGG | - | chr4_3:72082475-72082494 | Msa0660960:intron | 45.0% | |
| CACCAGTGTGATCATGATGA+TGG | + | chr4_3:72082480-72082499 | None:intergenic | 45.0% | |
| CATCATCATGATCACACTGG+TGG | - | chr4_3:72082478-72082497 | Msa0660960:intron | 45.0% | |
| TCCAAGCAGGCCTAGAAATA+TGG | - | chr4_3:72082910-72082929 | Msa0660960:intron | 45.0% | |
| CCAAGCAGGCCTAGAAATAT+GGG | - | chr4_3:72082911-72082930 | Msa0660960:intron | 45.0% | |
| ! | AGTTAGCGAGACAGAGTGTT+AGG | + | chr4_3:72082958-72082977 | None:intergenic | 45.0% |
| CTTGTCAAGGGGAGAAAGAA+AGG | + | chr4_3:72082997-72083016 | None:intergenic | 45.0% | |
| TTCTTTCTCCCCTTGACAAG+CGG | - | chr4_3:72082997-72083016 | Msa0660960:CDS | 45.0% | |
| ATCTGTTTCCCGCTTGTCAA+GGG | + | chr4_3:72083009-72083028 | None:intergenic | 45.0% | |
| AATCTGTTTCCCGCTTGTCA+AGG | + | chr4_3:72083010-72083029 | None:intergenic | 45.0% | |
| CCCTTCTCATGTTGCATTAC+AGG | - | chr4_3:72083256-72083275 | Msa0660960:intron | 45.0% | |
| GTTCAGCAACCGACAACAAA+AGG | - | chr4_3:72083285-72083304 | Msa0660960:intron | 45.0% | |
| ACCGACAACAAAAGGATTCC+TGG | - | chr4_3:72083293-72083312 | Msa0660960:intron | 45.0% | |
| !! | GCCAGGAATCCTTTTGTTGT+CGG | + | chr4_3:72083297-72083316 | None:intergenic | 45.0% |
| GGTGATAAGTGGATGTTTGC+TGG | - | chr4_3:72083338-72083357 | Msa0660960:intron | 45.0% | |
| TGTCCATTACTTGCACCTCA+TGG | + | chr4_3:72083364-72083383 | None:intergenic | 45.0% | |
| AGAAGAGCCACACAACAAGA+AGG | + | chr4_3:72083439-72083458 | None:intergenic | 45.0% | |
| CCACATCAGCTTCTACTTTC+CGG | - | chr4_3:72083492-72083511 | Msa0660960:intron | 45.0% | |
| CACATCAGCTTCTACTTTCC+GGG | - | chr4_3:72083493-72083512 | Msa0660960:intron | 45.0% | |
| GTAAAAATTGCCCCAGATCC+CGG | + | chr4_3:72083514-72083533 | None:intergenic | 45.0% | |
| !! | GGATCTGGGGCAATTTTTAC+AGG | - | chr4_3:72083514-72083533 | Msa0660960:intron | 45.0% |
| TCATGCGGCAAACTCTTTGA+AGG | - | chr4_3:72083556-72083575 | Msa0660960:intron | 45.0% | |
| AGGTAAAACCAACCTCCTGA+GGG | + | chr4_3:72083585-72083604 | None:intergenic | 45.0% | |
| AAATCACAAGTCCCTTGTGC+GGG | + | chr4_3:72083722-72083741 | None:intergenic | 45.0% | |
| AGAGTTTGAGTGTAGTGCGA+TGG | - | chr4_3:72083847-72083866 | Msa0660960:CDS | 45.0% | |
| CACTAAGATTGCAGACTTGG+GGG | + | chr4_3:72083893-72083912 | None:intergenic | 45.0% | |
| ! | CATACACGTGCTGATCAAAG+GGG | + | chr4_3:72083938-72083957 | None:intergenic | 45.0% |
| AGATTGCATCTGTAACAGGG+AGG | + | chr4_3:72084270-72084289 | None:intergenic | 45.0% | |
| AGTCAATGGCACGGTACTTA+GGG | + | chr4_3:72084409-72084428 | None:intergenic | 45.0% | |
| ! | GATCGAAGTTCCTTGTTTCC+AGG | + | chr4_3:72084485-72084504 | None:intergenic | 45.0% |
| AAGGAACTTCGATCCTATGC+TGG | - | chr4_3:72084491-72084510 | Msa0660960:CDS | 45.0% | |
| GCAATTCCAAAACTCACCGT+GGG | + | chr4_3:72084548-72084567 | None:intergenic | 45.0% | |
| GACCACACTGAAGATGGAAA+AGG | - | chr4_3:72084684-72084703 | Msa0660960:intron | 45.0% | |
| ! | AGCCTTTTCCATCTTCAGTG+TGG | + | chr4_3:72084689-72084708 | None:intergenic | 45.0% |
| TTTGTGCGTTGGATGTACGA+AGG | + | chr4_3:72084723-72084742 | None:intergenic | 45.0% | |
| GTACATCCAACGCACAAATC+CGG | - | chr4_3:72084725-72084744 | Msa0660960:intron | 45.0% | |
| ! | CTTATGGTCGAAGGCTTGTT+TGG | + | chr4_3:72084973-72084992 | None:intergenic | 45.0% |
| AAGCCTTCGACCATAAGTGT+TGG | - | chr4_3:72084976-72084995 | Msa0660960:intron | 45.0% | |
| ! | AGCAGTAACTGTGGCTCTAT+TGG | - | chr4_3:72085237-72085256 | Msa0660960:five_prime_UTR | 45.0% |
| !!! | AAAAAATTGAAATTTTAATT+CGG | + | chr4_3:72081343-72081362 | None:intergenic | 5.0% |
| TGATGAAGAAGAAGGGGTGG+TGG | - | chr4_3:72081153-72081172 | Msa0660960:three_prime_UTR | 50.0% | |
| AGAAAAAGCGGACATGGCAG+TGG | + | chr4_3:72081285-72081304 | None:intergenic | 50.0% | |
| !!! | CCGCTTTTTCTTCCTGTTCC+AGG | - | chr4_3:72081294-72081313 | Msa0660960:three_prime_UTR | 50.0% |
| TGAGAGCTGGGTTTAGTGTC+TGG | - | chr4_3:72081755-72081774 | Msa0660960:intron | 50.0% | |
| ! | ACGCAGCGTTTTATATGGCG+TGG | + | chr4_3:72081842-72081861 | None:intergenic | 50.0% |
| ACGCCATATAAAACGCTGCG+TGG | - | chr4_3:72081841-72081860 | Msa0660960:CDS | 50.0% | |
| ! | CCTCCACGCAGCGTTTTATA+TGG | + | chr4_3:72081847-72081866 | None:intergenic | 50.0% |
| CCATATAAAACGCTGCGTGG+AGG | - | chr4_3:72081844-72081863 | Msa0660960:CDS | 50.0% | |
| TGGGAAACTTAGGCCCAGTT+TGG | + | chr4_3:72082234-72082253 | None:intergenic | 50.0% | |
| ATGACAGGCGTAGCTTCAGA+AGG | + | chr4_3:72082406-72082425 | None:intergenic | 50.0% | |
| AGCTTAGCTCCGTGAGCATT+AGG | + | chr4_3:72082782-72082801 | None:intergenic | 50.0% | |
| GGACAGAGAATGTTCCCTGT+AGG | + | chr4_3:72082805-72082824 | None:intergenic | 50.0% | |
| CTCTTTGGATGACTCCAAGC+AGG | - | chr4_3:72082897-72082916 | Msa0660960:intron | 50.0% | |
| !! | CCCATATTTCTAGGCCTGCT+TGG | + | chr4_3:72082914-72082933 | None:intergenic | 50.0% |
| TCTTTCTCCCCTTGACAAGC+GGG | - | chr4_3:72082998-72083017 | Msa0660960:CDS | 50.0% | |
| TCTGTTTCCCGCTTGTCAAG+GGG | + | chr4_3:72083008-72083027 | None:intergenic | 50.0% | |
| TGGCCATGAGGTGCAAGTAA+TGG | - | chr4_3:72083358-72083377 | Msa0660960:intron | 50.0% | |
| !! | GTGCAAGTAATGGACACACC+TGG | - | chr4_3:72083368-72083387 | Msa0660960:intron | 50.0% |
| CCGGAAAGTAGAAGCTGATG+TGG | + | chr4_3:72083495-72083514 | None:intergenic | 50.0% | |
| AGCTTCTACTTTCCGGGATC+TGG | - | chr4_3:72083499-72083518 | Msa0660960:intron | 50.0% | |
| GCTTCTACTTTCCGGGATCT+GGG | - | chr4_3:72083500-72083519 | Msa0660960:intron | 50.0% | |
| CTTCTACTTTCCGGGATCTG+GGG | - | chr4_3:72083501-72083520 | Msa0660960:intron | 50.0% | |
| ! | ACTCTTTGAAGGAACCCCTC+AGG | - | chr4_3:72083567-72083586 | Msa0660960:intron | 50.0% |
| GGTAAAACCAACCTCCTGAG+GGG | + | chr4_3:72083584-72083603 | None:intergenic | 50.0% | |
| CAGGTAAAACCAACCTCCTG+AGG | + | chr4_3:72083586-72083605 | None:intergenic | 50.0% | |
| !!! | CTCAGGAGGTTGGTTTTACC+TGG | - | chr4_3:72083584-72083603 | Msa0660960:intron | 50.0% |
| GTCACCACAAAGTCCTCGTT+TGG | + | chr4_3:72083754-72083773 | None:intergenic | 50.0% | |
| CTGTGGACACGAGTACACAT+TGG | - | chr4_3:72084334-72084353 | Msa0660960:intron | 50.0% | |
| GAGTCAATGGCACGGTACTT+AGG | + | chr4_3:72084410-72084429 | None:intergenic | 50.0% | |
| GTGGCTTCCCTTCGAAGTAA+AGG | - | chr4_3:72084518-72084537 | Msa0660960:CDS | 50.0% | |
| GGGCAAGCCTTTACTTCGAA+GGG | + | chr4_3:72084528-72084547 | None:intergenic | 50.0% | |
| TGGGCAAGCCTTTACTTCGA+AGG | + | chr4_3:72084529-72084548 | None:intergenic | 50.0% | |
| TCGAAGTAAAGGCTTGCCCA+CGG | - | chr4_3:72084529-72084548 | Msa0660960:CDS | 50.0% | |
| CGCAATTCCAAAACTCACCG+TGG | + | chr4_3:72084549-72084568 | None:intergenic | 50.0% | |
| GATTCCGACCACACTGAAGA+TGG | - | chr4_3:72084678-72084697 | Msa0660960:intron | 50.0% | |
| GCGTTGGATGTACGAAGGAA+TGG | + | chr4_3:72084718-72084737 | None:intergenic | 50.0% | |
| TGCTTGTCGGATGATACCCA+GGG | + | chr4_3:72084791-72084810 | None:intergenic | 50.0% | |
| TTGCTTGTCGGATGATACCC+AGG | + | chr4_3:72084792-72084811 | None:intergenic | 50.0% | |
| GGGTATCATCCGACAAGCAA+AGG | - | chr4_3:72084792-72084811 | Msa0660960:intron | 50.0% | |
| !! | ATTGGTGTCAGTGTCGTGTC+CGG | + | chr4_3:72084872-72084891 | None:intergenic | 50.0% |
| CACATGTGTCAGTGTCGTGT+CGG | - | chr4_3:72084921-72084940 | Msa0660960:intron | 50.0% | |
| ! | TGAAGAAGAAGGGGTGGTGG+TGG | - | chr4_3:72081156-72081175 | Msa0660960:three_prime_UTR | 55.0% |
| ! | GGCTAGTCGCTCACTTAGAG+TGG | - | chr4_3:72081867-72081886 | Msa0660960:CDS | 55.0% |
| GTCGCTCACTTAGAGTGGCT+CGG | - | chr4_3:72081872-72081891 | Msa0660960:CDS | 55.0% | |
| TCTGTAAGCTGCGGCGATTC+AGG | + | chr4_3:72082671-72082690 | None:intergenic | 55.0% | |
| TCACGGAGCTAAGCTCCTAC+AGG | - | chr4_3:72082787-72082806 | Msa0660960:CDS | 55.0% | |
| CACGGAGCTAAGCTCCTACA+GGG | - | chr4_3:72082788-72082807 | Msa0660960:CDS | 55.0% | |
| CACAGCCCTTTGCCATAACC+AGG | + | chr4_3:72083226-72083245 | None:intergenic | 55.0% | |
| ! | GTGGATGTTTGCTGGCCATG+AGG | - | chr4_3:72083346-72083365 | Msa0660960:intron | 55.0% |
| ATGTGACCTCGAGTGTGACC+AGG | + | chr4_3:72083389-72083408 | None:intergenic | 55.0% | |
| ! | CTTTGAAGGAACCCCTCAGG+AGG | - | chr4_3:72083570-72083589 | Msa0660960:intron | 55.0% |
| GCAGCCAAACGAGGACTTTG+TGG | - | chr4_3:72083747-72083766 | Msa0660960:intron | 55.0% | |
| TTCGCATTGAGGCTCGAACC+TGG | - | chr4_3:72084464-72084483 | Msa0660960:CDS | 55.0% | |
| GAGGCTCGAACCTGGAAACA+AGG | - | chr4_3:72084472-72084491 | Msa0660960:CDS | 55.0% | |
| TACTTCGAAGGGAAGCCACG+TGG | + | chr4_3:72084517-72084536 | None:intergenic | 55.0% | |
| CGATTGCCGGATTTGTGCGT+TGG | + | chr4_3:72084734-72084753 | None:intergenic | 55.0% | |
| TCTGCATCATCTGCTGTGGC+TGG | + | chr4_3:72084766-72084785 | None:intergenic | 55.0% | |
| GGCTTCTGCATCATCTGCTG+TGG | + | chr4_3:72084770-72084789 | None:intergenic | 55.0% | |
| AGCAGATGATGCAGAAGCCC+TGG | - | chr4_3:72084771-72084790 | Msa0660960:intron | 55.0% | |
| GCAGATGATGCAGAAGCCCT+GGG | - | chr4_3:72084772-72084791 | Msa0660960:intron | 55.0% | |
| !! | TTGGTGTCAGTGTCGTGTCC+GGG | + | chr4_3:72084871-72084890 | None:intergenic | 55.0% |
| ! | TGTCAGTGTCGTGTCGGTGT+TGG | - | chr4_3:72084927-72084946 | Msa0660960:intron | 55.0% |
| GACACACCTGGTCACACTCG+AGG | - | chr4_3:72083380-72083399 | Msa0660960:intron | 60.0% | |
| GAAGGAACCCCTCAGGAGGT+TGG | - | chr4_3:72083574-72083593 | Msa0660960:intron | 60.0% | |
| TCGATCCTATGCTGGCCACG+TGG | - | chr4_3:72084499-72084518 | Msa0660960:CDS | 60.0% | |
| ! | GGCTTGCCCACGGTGAGTTT+TGG | - | chr4_3:72084539-72084558 | Msa0660960:CDS | 60.0% |
| CAGTGTCGTGTCCGGGTCAA+TGG | + | chr4_3:72084864-72084883 | None:intergenic | 60.0% | |
| GGAAGCCACGTGGCCAGCAT+AGG | + | chr4_3:72084507-72084526 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 72081113 | 72085261 | 72081113 | ID=Msa0660960;Name=Msa0660960 |
| chr4_3 | mRNA | 72081113 | 72085261 | 72081113 | ID=Msa0660960-mRNA-1;Parent=Msa0660960;Name=Msa0660960-mRNA-1;_AED=0.17;_eAED=0.17;_QI=42|1|1|1|1|1|8|436|365 |
| chr4_3 | exon | 72081113 | 72081695 | 72081113 | ID=Msa0660960-mRNA-1:exon:21614;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72081824 | 72081922 | 72081824 | ID=Msa0660960-mRNA-1:exon:21613;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72082019 | 72082093 | 72082019 | ID=Msa0660960-mRNA-1:exon:21612;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72082783 | 72082883 | 72082783 | ID=Msa0660960-mRNA-1:exon:21611;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72082973 | 72083096 | 72082973 | ID=Msa0660960-mRNA-1:exon:21610;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72083840 | 72084043 | 72083840 | ID=Msa0660960-mRNA-1:exon:21609;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72084435 | 72084620 | 72084435 | ID=Msa0660960-mRNA-1:exon:21608;Parent=Msa0660960-mRNA-1 |
| chr4_3 | exon | 72085058 | 72085261 | 72085058 | ID=Msa0660960-mRNA-1:exon:21607;Parent=Msa0660960-mRNA-1 |
| chr4_3 | five_prime_UTR | 72085220 | 72085261 | 72085220 | ID=Msa0660960-mRNA-1:five_prime_utr;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72085058 | 72085219 | 72085058 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72084435 | 72084620 | 72084435 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72083840 | 72084043 | 72083840 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72082973 | 72083096 | 72082973 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72082783 | 72082883 | 72082783 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72082019 | 72082093 | 72082019 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72081824 | 72081922 | 72081824 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | CDS | 72081549 | 72081695 | 72081549 | ID=Msa0660960-mRNA-1:cds;Parent=Msa0660960-mRNA-1 |
| chr4_3 | three_prime_UTR | 72081113 | 72081548 | 72081113 | ID=Msa0660960-mRNA-1:three_prime_utr;Parent=Msa0660960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
