AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033650 MtrunA17_Chr1g0184791 96.104 231 8 1 3 232 4 234 1.15e-163 451
Msa0033650 MtrunA17_Chr7g0260641 68.571 245 58 7 1 232 1 239 5.54e-99 288
Msa0033650 MtrunA17_Chr1g0187921 64.348 230 57 7 14 232 10 225 8.74e-88 259
Msa0033650 MtrunA17_Chr1g0190711 62.232 233 67 6 14 232 17 242 2.99e-83 248
Msa0033650 MtrunA17_Chr5g0428141 64.667 150 49 3 83 232 191 336 9.63e-62 196
Msa0033650 MtrunA17_Chr5g0411501 62.658 158 54 4 77 232 170 324 1.33e-61 196
Msa0033650 MtrunA17_Chr2g0331411 64.901 151 48 4 83 231 167 314 3.50e-60 192
Msa0033650 MtrunA17_Chr8g0366881 62.821 156 52 4 79 232 186 337 1.34e-59 191
Msa0033650 MtrunA17_Chr6g0486121 51.759 199 82 4 35 232 58 243 4.80e-59 187
Msa0033650 MtrunA17_Chr8g0390281 60.000 155 53 4 81 231 132 281 3.57e-56 181
Msa0033650 MtrunA17_Chr1g0166011 44.105 229 74 6 12 232 1 183 1.53e-51 165
Msa0033650 MtrunA17_Chr1g0184801 43.333 240 90 7 1 232 1 202 1.86e-51 166
Msa0033650 MtrunA17_Chr1g0187961 41.739 230 68 7 9 231 8 178 2.14e-48 157
Msa0033650 MtrunA17_Chr7g0260621 42.735 234 87 6 9 232 6 202 1.17e-47 156
Msa0033650 MtrunA17_Chr4g0004181 50.676 148 40 5 86 232 52 167 5.45e-35 122
Msa0033650 MtrunA17_Chr2g0332141 57.426 101 32 4 126 223 8 100 2.09e-32 114
Msa0033650 MtrunA17_Chr2g0330951 34.100 261 135 8 6 232 4 261 5.14e-30 112
Msa0033650 MtrunA17_Chr8g0340731 33.984 256 130 6 7 224 3 257 1.33e-29 111
Msa0033650 MtrunA17_Chr1g0183251 34.538 249 108 8 21 232 27 257 2.71e-26 102
Msa0033650 MtrunA17_Chr4g0069561 36.129 155 65 6 80 228 58 184 7.41e-20 83.6
Msa0033650 MtrunA17_Chr3g0137601 30.282 142 79 3 88 228 88 210 1.81e-18 80.5
Msa0033650 MtrunA17_Chr1g0193861 38.835 103 50 1 122 224 81 170 3.90e-17 76.3
Msa0033650 MtrunA17_Chr7g0270851 32.824 131 68 3 94 224 45 155 5.43e-16 72.8
Msa0033650 MtrunA17_Chr4g0064131 29.710 138 74 3 89 226 93 207 9.81e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033650 AT4G14550.2 63.793 232 58 8 12 232 1 217 2.13e-87 258
Msa0033650 AT4G14550.1 63.636 231 58 8 12 231 1 216 9.48e-87 256
Msa0033650 AT3G23050.1 63.913 230 54 8 21 232 13 231 9.63e-87 257
Msa0033650 AT3G04730.1 60.256 234 64 7 14 231 4 224 2.91e-83 248
Msa0033650 AT1G04250.1 60.793 227 58 9 18 232 11 218 8.69e-80 239
Msa0033650 AT4G14550.3 61.905 210 54 8 12 210 1 195 1.06e-72 220
Msa0033650 AT3G23050.2 62.679 209 49 8 21 211 13 210 2.20e-72 219
Msa0033650 AT5G65670.2 53.333 210 82 6 35 232 120 325 1.33e-60 194
Msa0033650 AT5G65670.1 53.333 210 82 6 35 232 120 325 1.58e-60 193
Msa0033650 AT4G29080.1 58.989 178 60 5 63 232 122 294 4.29e-60 191
Msa0033650 AT2G22670.5 59.211 152 57 3 83 232 160 308 1.06e-55 181
Msa0033650 AT2G22670.2 59.211 152 57 3 83 232 160 308 1.06e-55 181
Msa0033650 AT2G22670.3 58.940 151 57 3 83 231 160 307 9.14e-55 178
Msa0033650 AT2G22670.1 58.940 151 57 3 83 231 160 307 9.14e-55 178
Msa0033650 AT2G22670.4 58.940 151 57 4 83 231 177 324 1.25e-54 178
Msa0033650 AT5G43700.1 58.667 150 36 5 84 232 58 182 6.30e-51 164
Msa0033650 AT1G04240.1 46.667 225 79 9 9 232 2 186 1.31e-49 160
Msa0033650 AT1G04240.2 46.667 225 79 9 9 232 102 286 1.71e-48 161
Msa0033650 AT3G23030.1 42.793 222 49 4 21 231 16 170 1.71e-48 157
Msa0033650 AT3G23030.2 42.793 222 49 4 21 231 103 257 1.08e-47 158
Msa0033650 AT4G14550.4 57.576 165 45 7 12 165 1 151 2.07e-44 147
Msa0033650 AT3G23050.3 57.317 164 42 7 21 166 13 166 3.26e-43 144
Msa0033650 AT4G14560.1 45.833 216 56 7 14 228 9 164 2.24e-40 136
Msa0033650 AT3G15540.1 40.175 229 92 7 8 232 2 189 2.52e-40 137
Msa0033650 AT2G33310.3 43.784 185 82 5 65 232 52 231 6.28e-38 132
Msa0033650 AT2G33310.1 43.784 185 82 5 65 232 52 231 6.28e-38 132
Msa0033650 AT1G15580.1 40.094 212 62 6 14 224 10 157 8.77e-38 130
Msa0033650 AT1G04550.2 43.850 187 76 5 65 231 46 223 2.05e-37 131
Msa0033650 AT2G33310.2 43.548 186 82 6 65 232 52 232 1.94e-36 129
Msa0033650 AT1G52830.1 36.638 232 90 8 9 232 3 185 1.15e-33 120
Msa0033650 AT3G16500.1 36.245 229 120 7 15 227 34 252 6.79e-33 120
Msa0033650 AT3G16500.2 36.245 229 120 6 15 227 34 252 7.68e-33 120
Msa0033650 AT4G28640.3 44.375 160 71 5 87 232 87 242 9.92e-33 119
Msa0033650 AT4G28640.1 44.304 158 70 5 87 230 87 240 2.20e-32 118
Msa0033650 AT4G28640.2 44.304 158 70 5 87 230 87 240 2.72e-31 117
Msa0033650 AT1G04100.1 40.588 170 70 6 90 232 95 260 5.66e-29 110
Msa0033650 AT1G51950.1 39.634 164 72 6 85 227 93 250 6.28e-27 104
Msa0033650 AT5G25890.1 36.986 146 68 2 87 232 47 168 9.28e-24 94.0
Msa0033650 AT3G17600.1 31.875 160 78 4 69 224 22 154 1.53e-20 85.1
Msa0033650 AT3G62100.1 38.532 109 51 2 118 224 74 168 1.69e-17 77.4
Msa0033650 AT2G46990.1 40.404 99 45 1 126 224 86 170 3.30e-17 76.6
Msa0033650 AT4G32280.1 26.627 169 76 4 87 226 93 242 2.99e-15 73.2
Msa0033650 AT4G32280.2 32.673 101 49 2 126 226 119 200 1.31e-14 70.5
Msa0033650 AT1G04550.1 36.066 122 59 3 65 167 46 167 4.04e-13 65.9
Msa0033650 AT2G46990.2 40.698 86 37 1 126 211 86 157 2.04e-12 63.5
Msa0033650 AT3G62100.2 37.500 96 44 2 118 211 74 155 3.54e-12 62.8
Msa0033650 AT1G15050.2 31.967 122 68 2 108 229 44 150 4.32e-11 59.7
Msa0033650 AT1G15050.1 29.630 135 76 3 95 229 67 182 9.84e-11 59.3

Find 73 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTCCACTGCTCTTT+TGG 0.091227 1_1:+61249749 None:intergenic
CTAACTTTCACAAAGCTTAT+TGG 0.130204 1_1:+61249697 None:intergenic
GGTAAAGGAGTTAAACATTT+TGG 0.221116 1_1:+61249597 None:intergenic
GCTCTTCTGCTCTCTGATTC+TGG 0.233246 1_1:-61250712 Msa0033650:CDS
GGTAACTCTTGTACATCTTT+AGG 0.262824 1_1:+61249641 None:intergenic
AAGCTTTGTGAAAGTTAGTA+TGG 0.303935 1_1:-61249692 Msa0033650:CDS
TTGTGAATCCCAAGGCATTA+AGG 0.313394 1_1:-61248874 Msa0033650:CDS
GGAAAACAACAGAAGTAATA+AGG 0.347716 1_1:-61250849 Msa0033650:CDS
GGAAGTTGCAGGGCTGAAAA+AGG 0.353058 1_1:-61250926 Msa0033650:CDS
AGCAGAAGAGCCTTCTCCTT+TGG 0.360991 1_1:+61250724 None:intergenic
CCATCTTTGTCTTCATAAGT+TGG 0.383939 1_1:+61248795 None:intergenic
CATGAAATCCTTAATGCCTT+GGG 0.384985 1_1:+61248866 None:intergenic
GAAGCTTAATCTTTCTACTA+AGG 0.400977 1_1:-61250773 Msa0033650:CDS
TCATGAAATCCTTAATGCCT+TGG 0.406074 1_1:+61248865 None:intergenic
CATCTTTGTCTTCATAAGTT+GGG 0.414636 1_1:+61248796 None:intergenic
AGGCTAGGACTTGGATTGCC+AGG 0.417824 1_1:-61250871 Msa0033650:CDS
TTCTCCTTTGGCTTAAATTG+TGG 0.418936 1_1:+61250736 None:intergenic
AGCATTCAGTGTGATTTGAT+TGG 0.424793 1_1:+61250993 None:intergenic
AACTTGATAATGGAAGTTGC+AGG 0.451323 1_1:-61250937 Msa0033650:exon
GAATGAGAGTAATAAGTTGA+TGG 0.457906 1_1:-61248844 Msa0033650:CDS
GCTAAGGCATCAGAGAGCTC+TGG 0.465095 1_1:+61249619 None:intergenic
GGAGGAAAAGATGGTGTTTG+AGG 0.477721 1_1:-61250905 Msa0033650:CDS
AGGTCTACTTTGCGGAGGTA+AGG 0.480055 1_1:+61249661 None:intergenic
GGGCAGCAAACATGTTCTTA+CGG 0.483487 1_1:+61249770 None:intergenic
CTTAATCTTTCTACTAAGGA+AGG 0.487124 1_1:-61250769 Msa0033650:CDS
GGAAAGGAAGCCATTGGACT+CGG 0.495438 1_1:-61248439 Msa0033650:CDS
TAATGAACAACTTACTTAGC+AGG 0.499421 1_1:+61250679 None:intergenic
TTTGTGACAATAATAGAGGA+AGG 0.505887 1_1:+61251016 None:intergenic
ATAGAGGAAGGGGTATAGAA+AGG 0.512057 1_1:+61251028 None:intergenic
AGGCAAGAGCACGTTGAAGT+GGG 0.512186 1_1:+61251048 None:intergenic
ACATCTTTAGGTCTACTTTG+CGG 0.517949 1_1:+61249653 None:intergenic
CTAAGGCATCAGAGAGCTCT+GGG 0.519415 1_1:+61249620 None:intergenic
ATGAAAGGAAAGGAAGCCAT+TGG 0.526527 1_1:-61248445 Msa0033650:CDS
TTGGTTTGTGACAATAATAG+AGG 0.530133 1_1:+61251012 None:intergenic
TTTGTGAAAGTTAGTATGGA+TGG 0.531648 1_1:-61249688 Msa0033650:CDS
TGTGACAATAATAGAGGAAG+GGG 0.540700 1_1:+61251018 None:intergenic
ACAATTTAAGCCAAAGGAGA+AGG 0.543283 1_1:-61250734 Msa0033650:CDS
ACTGAACTGAGGCTAGGACT+TGG 0.544230 1_1:-61250880 Msa0033650:CDS
ATGTTTAACTCCTTTACCAC+AGG 0.544923 1_1:-61249592 Msa0033650:intron
ACGTATAGGGCACAAGTGGT+AGG 0.553577 1_1:-61249814 Msa0033650:intron
CCAACTTATGAAGACAAAGA+TGG 0.567272 1_1:-61248795 Msa0033650:CDS
CGTATAGGGCACAAGTGGTA+GGG 0.568467 1_1:-61249813 Msa0033650:intron
AAGGCAAGAGCACGTTGAAG+TGG 0.578771 1_1:+61251047 None:intergenic
TGCTTGTCGGTGATGTACCA+TGG 0.581796 1_1:-61248764 Msa0033650:CDS
TTGTGACAATAATAGAGGAA+GGG 0.584516 1_1:+61251017 None:intergenic
GCAAGAGCACGTTGAAGTGG+GGG 0.588919 1_1:+61251050 None:intergenic
ATGAAGACAAAGATGGCGAC+TGG 0.589440 1_1:-61248788 Msa0033650:CDS
TTCATAAGTTGGGACATAGT+CGG 0.596025 1_1:+61248806 None:intergenic
TTTACGTATCATGAAAGGAA+AGG 0.596184 1_1:-61248455 Msa0033650:CDS
AGATCCACAATTTAAGCCAA+AGG 0.598269 1_1:-61250740 Msa0033650:CDS
GGCTAGGACTTGGATTGCCA+GGG 0.598855 1_1:-61250870 Msa0033650:CDS
AAGCGTTTACGTATCATGAA+AGG 0.600017 1_1:-61248460 Msa0033650:CDS
GGCAAGAGCACGTTGAAGTG+GGG 0.601053 1_1:+61251049 None:intergenic
GAATTGAAAACTTACTCCCA+TGG 0.601391 1_1:+61248747 None:intergenic
GATGGCGACTGGATGCTTGT+CGG 0.601801 1_1:-61248777 Msa0033650:CDS
TTACGGAATGACCGCACTGG+TGG 0.603134 1_1:+61249787 None:intergenic
GCTTGTCGGTGATGTACCAT+GGG 0.605812 1_1:-61248763 Msa0033650:CDS
GAGGAAACTGAACTGAGGCT+AGG 0.606535 1_1:-61250886 Msa0033650:CDS
TTCTTACGGAATGACCGCAC+TGG 0.606920 1_1:+61249784 None:intergenic
CTGTACGTATAGGGCACAAG+TGG 0.611935 1_1:-61249818 Msa0033650:intron
ACAGAAGTAATAAGGAAGAG+AGG 0.613004 1_1:-61250841 Msa0033650:CDS
GAAGGAAATTGTGAATCCCA+AGG 0.620096 1_1:-61248882 Msa0033650:intron
GCTGCCCAAAAGAGCAGTGG+AGG 0.620267 1_1:-61249754 Msa0033650:CDS
TGAACAACTTACTTAGCAGG+AGG 0.624213 1_1:+61250682 None:intergenic
ACTTGATAATGGAAGTTGCA+GGG 0.628469 1_1:-61250936 Msa0033650:exon
ATCATACTAACCGAGTCCAA+TGG 0.634399 1_1:+61248429 None:intergenic
CAAGAGCACGTTGAAGTGGG+GGG 0.644816 1_1:+61251051 None:intergenic
TCTTTAGGTCTACTTTGCGG+AGG 0.646104 1_1:+61249656 None:intergenic
TTTGCTGCCCAAAAGAGCAG+TGG 0.650500 1_1:-61249757 Msa0033650:CDS
TGGTAGGGTGGCCACCAGTG+CGG 0.683033 1_1:-61249798 Msa0033650:CDS
ATAGGGCACAAGTGGTAGGG+TGG 0.690264 1_1:-61249810 Msa0033650:intron
TGAAAGTGAAACAAACACTG+TGG 0.729821 1_1:-61250800 Msa0033650:CDS
TGTTTGAGGAAACTGAACTG+AGG 0.788719 1_1:-61250891 Msa0033650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAATATTTATTTTT+TGG - chr1_1:61250882-61250901 Msa0033650:CDS 0.0%
!! ATATAAATTATTAATCACAA+AGG + chr1_1:61249018-61249037 None:intergenic 10.0%
!!! TTTTAATTGTGAATTAAATA+TGG - chr1_1:61249345-61249364 Msa0033650:intron 10.0%
!!! TAAAAATAGTTCTATATTAA+AGG - chr1_1:61249405-61249424 Msa0033650:intron 10.0%
!! AAATTAAATTTATTCTTTCA+TGG + chr1_1:61250490-61250509 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG - chr1_1:61250498-61250517 Msa0033650:intron 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG - chr1_1:61250499-61250518 Msa0033650:intron 10.0%
!! GTAATGAAATAAATAAAATA+GGG + chr1_1:61250808-61250827 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAT+AGG + chr1_1:61250809-61250828 None:intergenic 10.0%
!!! TTATGTTCCAATTAATTTTA+TGG + chr1_1:61248952-61248971 None:intergenic 15.0%
!!! AAAATTTGCTATATTGTTAT+GGG + chr1_1:61249135-61249154 None:intergenic 15.0%
!! GATAACAATAGTATATAATA+AGG + chr1_1:61249298-61249317 None:intergenic 15.0%
!! AAACTATCAACTTTATAATA+AGG - chr1_1:61249443-61249462 Msa0033650:intron 15.0%
!! AATTTCATTGCTAAAATAAA+TGG - chr1_1:61249537-61249556 Msa0033650:intron 15.0%
!! TGATGAAATTCAATAAATAA+AGG - chr1_1:61250182-61250201 Msa0033650:intron 15.0%
!!! AATAAATAAAGGTATAATAG+CGG - chr1_1:61250193-61250212 Msa0033650:intron 15.0%
!! ATTACATACAATAAAATTTG+TGG + chr1_1:61250404-61250423 None:intergenic 15.0%
!! TTTATATTGAAATTGATTGA+AGG - chr1_1:61250601-61250620 Msa0033650:intron 15.0%
!!! TTCCAATTAATTTTATGGAT+CGG + chr1_1:61248947-61248966 None:intergenic 20.0%
!! AATTATTAATCACAAAGGAA+TGG + chr1_1:61249013-61249032 None:intergenic 20.0%
!!! AAATTTGCTATATTGTTATG+GGG + chr1_1:61249134-61249153 None:intergenic 20.0%
!!! CAAAATTTGCTATATTGTTA+TGG + chr1_1:61249136-61249155 None:intergenic 20.0%
!! TACTTATAGAAAAAAGTAAG+AGG + chr1_1:61249202-61249221 None:intergenic 20.0%
!! GTACAATAAAAACATATAGT+AGG + chr1_1:61249477-61249496 None:intergenic 20.0%
!! AGATAAAAAAAAATTACCTG+TGG + chr1_1:61249928-61249947 None:intergenic 20.0%
!!! ATTTTAGTATATGTTAGATG+AGG - chr1_1:61249955-61249974 Msa0033650:intron 20.0%
!!! TTTTAGTATATGTTAGATGA+GGG - chr1_1:61249956-61249975 Msa0033650:intron 20.0%
!! AATCATACAAAAACCTTAAA+CGG + chr1_1:61250066-61250085 None:intergenic 20.0%
!!! ATATTCTAAAATGATGTATG+TGG - chr1_1:61250240-61250259 Msa0033650:intron 20.0%
!! GCAATATTAAGACAAAATTA+AGG + chr1_1:61250447-61250466 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG - chr1_1:61250448-61250467 Msa0033650:intron 20.0%
!! AGATCAATATCAAGTATTAA+TGG - chr1_1:61250564-61250583 Msa0033650:intron 20.0%
! AGAGAGAAAAAACTTGATAA+TGG - chr1_1:61248554-61248573 Msa0033650:intron 25.0%
! TTACGCATGCTTAAATATTT+AGG + chr1_1:61248849-61248868 None:intergenic 25.0%
! TTCCGATCCATAAAATTAAT+TGG - chr1_1:61248942-61248961 Msa0033650:intron 25.0%
!! TAGTTCTATATTAAAGGACA+AGG - chr1_1:61249411-61249430 Msa0033650:intron 25.0%
!! GAAAATTCTCAAGTTTTTGA+AGG + chr1_1:61249603-61249622 None:intergenic 25.0%
! AAAAAAATTACCTGTGGTAA+AGG + chr1_1:61249922-61249941 None:intergenic 25.0%
!! ACTTTTGCTTATAATAGTGA+CGG - chr1_1:61250312-61250331 Msa0033650:intron 25.0%
!!! AGAAGACATATTATTTTGAG+AGG - chr1_1:61250360-61250379 Msa0033650:intron 25.0%
!!! GAAGACATATTATTTTGAGA+GGG - chr1_1:61250361-61250380 Msa0033650:intron 25.0%
! TTCGTTAGCTATATATATTG+TGG + chr1_1:61250974-61250993 None:intergenic 25.0%
TTGTGACAATAATAGAGGAA+GGG + chr1_1:61248487-61248506 None:intergenic 30.0%
TTTGTGACAATAATAGAGGA+AGG + chr1_1:61248488-61248507 None:intergenic 30.0%
!! TTGGTTTGTGACAATAATAG+AGG + chr1_1:61248492-61248511 None:intergenic 30.0%
GGAAAACAACAGAAGTAATA+AGG - chr1_1:61248652-61248671 Msa0033650:intron 30.0%
GAAGCTTAATCTTTCTACTA+AGG - chr1_1:61248728-61248747 Msa0033650:intron 30.0%
CTTAATCTTTCTACTAAGGA+AGG - chr1_1:61248732-61248751 Msa0033650:intron 30.0%
TAATGAACAACTTACTTAGC+AGG + chr1_1:61248825-61248844 None:intergenic 30.0%
ATAGAAAAAAGTAAGAGGCA+AGG + chr1_1:61249197-61249216 None:intergenic 30.0%
AGTTCATGATTGTATTGCTT+TGG + chr1_1:61249577-61249596 None:intergenic 30.0%
AAAGCAATACAATCATGAAC+TGG - chr1_1:61249576-61249595 Msa0033650:intron 30.0%
ACTAATTGAACTGTACGTAT+AGG - chr1_1:61249673-61249692 Msa0033650:CDS 30.0%
CTAATTGAACTGTACGTATA+GGG - chr1_1:61249674-61249693 Msa0033650:CDS 30.0%
CTAACTTTCACAAAGCTTAT+TGG + chr1_1:61249807-61249826 None:intergenic 30.0%
! AAGCTTTGTGAAAGTTAGTA+TGG - chr1_1:61249809-61249828 Msa0033650:CDS 30.0%
TTTGTGAAAGTTAGTATGGA+TGG - chr1_1:61249813-61249832 Msa0033650:intron 30.0%
! GGTAAAGGAGTTAAACATTT+TGG + chr1_1:61249907-61249926 None:intergenic 30.0%
CTCAAAATAATAGCCGTTTA+AGG - chr1_1:61250050-61250069 Msa0033650:intron 30.0%
! CTTTTGCTTATAATAGTGAC+GGG - chr1_1:61250313-61250332 Msa0033650:intron 30.0%
! GAATGAGAGTAATAAGTTGA+TGG - chr1_1:61250657-61250676 Msa0033650:intron 30.0%
CATCTTTGTCTTCATAAGTT+GGG + chr1_1:61250708-61250727 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG - chr1_1:61250776-61250795 Msa0033650:CDS 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG - chr1_1:61251000-61251019 Msa0033650:five_prime_UTR 30.0%
TTTACGTATCATGAAAGGAA+AGG - chr1_1:61251046-61251065 Msa0033650:five_prime_UTR 30.0%
TGTGACAATAATAGAGGAAG+GGG + chr1_1:61248486-61248505 None:intergenic 35.0%
AGCATTCAGTGTGATTTGAT+TGG + chr1_1:61248511-61248530 None:intergenic 35.0%
!! AACTTGATAATGGAAGTTGC+AGG - chr1_1:61248564-61248583 Msa0033650:intron 35.0%
!! ACTTGATAATGGAAGTTGCA+GGG - chr1_1:61248565-61248584 Msa0033650:intron 35.0%
!!! ATTACTTCTGTTGTTTTCCC+TGG + chr1_1:61248651-61248670 None:intergenic 35.0%
ACAGAAGTAATAAGGAAGAG+AGG - chr1_1:61248660-61248679 Msa0033650:intron 35.0%
TGAAAGTGAAACAAACACTG+TGG - chr1_1:61248701-61248720 Msa0033650:intron 35.0%
AGATCCACAATTTAAGCCAA+AGG - chr1_1:61248761-61248780 Msa0033650:intron 35.0%
! TTCTCCTTTGGCTTAAATTG+TGG + chr1_1:61248768-61248787 None:intergenic 35.0%
ACAATTTAAGCCAAAGGAGA+AGG - chr1_1:61248767-61248786 Msa0033650:CDS 35.0%
GAGTACACATCAAGACTAAT+TGG + chr1_1:61249110-61249129 None:intergenic 35.0%
! GAAGTGCTTGAGTATATACA+TGG + chr1_1:61249653-61249672 None:intergenic 35.0%
ACATCTTTAGGTCTACTTTG+CGG + chr1_1:61249851-61249870 None:intergenic 35.0%
GGTAACTCTTGTACATCTTT+AGG + chr1_1:61249863-61249882 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG + chr1_1:61249901-61249920 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG - chr1_1:61249909-61249928 Msa0033650:intron 35.0%
AGTGAATGAGCGAAATGATA+AGG + chr1_1:61249998-61250017 None:intergenic 35.0%
CATGAAATCCTTAATGCCTT+GGG + chr1_1:61250638-61250657 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG + chr1_1:61250639-61250658 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG + chr1_1:61250698-61250717 None:intergenic 35.0%
CCATCTTTGTCTTCATAAGT+TGG + chr1_1:61250709-61250728 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG - chr1_1:61250706-61250725 Msa0033650:CDS 35.0%
GAATTGAAAACTTACTCCCA+TGG + chr1_1:61250757-61250776 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG + chr1_1:61250786-61250805 None:intergenic 35.0%
TGAAATTAGTACACGTACTC+AGG + chr1_1:61250855-61250874 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG + chr1_1:61250968-61250987 None:intergenic 35.0%
AAGCGTTTACGTATCATGAA+AGG - chr1_1:61251041-61251060 Msa0033650:five_prime_UTR 35.0%
! ATAGAGGAAGGGGTATAGAA+AGG + chr1_1:61248476-61248495 None:intergenic 40.0%
GCTGAAAAAGGAGGAAAAGA+TGG - chr1_1:61248587-61248606 Msa0033650:intron 40.0%
TGTTTGAGGAAACTGAACTG+AGG - chr1_1:61248610-61248629 Msa0033650:intron 40.0%
TGAACAACTTACTTAGCAGG+AGG + chr1_1:61248822-61248841 None:intergenic 40.0%
ATCACAAAGGAATGGAACAC+AGG + chr1_1:61249005-61249024 None:intergenic 40.0%
CGTGCATGTGAATATACACA+TGG - chr1_1:61250540-61250559 Msa0033650:intron 40.0%
GAAGGAAATTGTGAATCCCA+AGG - chr1_1:61250619-61250638 Msa0033650:intron 40.0%
! TTGTGAATCCCAAGGCATTA+AGG - chr1_1:61250627-61250646 Msa0033650:intron 40.0%
ACGTACTCAGGTGTAATTGT+TGG + chr1_1:61250843-61250862 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG - chr1_1:61251056-61251075 Msa0033650:five_prime_UTR 40.0%
GGAGGAAAAGATGGTGTTTG+AGG - chr1_1:61248596-61248615 Msa0033650:intron 45.0%
GGGCAGCAAACATGTTCTTA+CGG + chr1_1:61249734-61249753 None:intergenic 45.0%
! TGATCCTCCACTGCTCTTTT+GGG + chr1_1:61249754-61249773 None:intergenic 45.0%
TCTTTAGGTCTACTTTGCGG+AGG + chr1_1:61249848-61249867 None:intergenic 45.0%
ATGAAGACAAAGATGGCGAC+TGG - chr1_1:61250713-61250732 Msa0033650:CDS 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG + chr1_1:61250949-61250968 None:intergenic 45.0%
!! AAAAATAAAAAAAAATAGTA+AGG + chr1_1:61249226-61249245 None:intergenic 5.0%
!!! ACTATTTTTTTTTATTTTTT+TGG - chr1_1:61249227-61249246 Msa0033650:intron 5.0%
!! AAAAAAAATAGTATATAATA+AGG + chr1_1:61249259-61249278 None:intergenic 5.0%
!!! AACTATTTTTAAAATTTATA+TGG + chr1_1:61249396-61249415 None:intergenic 5.0%
! AGGCAAGAGCACGTTGAAGT+GGG + chr1_1:61248456-61248475 None:intergenic 50.0%
! AAGGCAAGAGCACGTTGAAG+TGG + chr1_1:61248457-61248476 None:intergenic 50.0%
GGAAGTTGCAGGGCTGAAAA+AGG - chr1_1:61248575-61248594 Msa0033650:intron 50.0%
AGTTGCAGGGCTGAAAAAGG+AGG - chr1_1:61248578-61248597 Msa0033650:intron 50.0%
GAGGAAACTGAACTGAGGCT+AGG - chr1_1:61248615-61248634 Msa0033650:intron 50.0%
ACTGAACTGAGGCTAGGACT+TGG - chr1_1:61248621-61248640 Msa0033650:intron 50.0%
AGCAGAAGAGCCTTCTCCTT+TGG + chr1_1:61248780-61248799 None:intergenic 50.0%
GCTCTTCTGCTCTCTGATTC+TGG - chr1_1:61248789-61248808 Msa0033650:CDS 50.0%
CTGTACGTATAGGGCACAAG+TGG - chr1_1:61249683-61249702 Msa0033650:CDS 50.0%
ACGTATAGGGCACAAGTGGT+AGG - chr1_1:61249687-61249706 Msa0033650:CDS 50.0%
CGTATAGGGCACAAGTGGTA+GGG - chr1_1:61249688-61249707 Msa0033650:CDS 50.0%
TTCTTACGGAATGACCGCAC+TGG + chr1_1:61249720-61249739 None:intergenic 50.0%
TTTGCTGCCCAAAAGAGCAG+TGG - chr1_1:61249744-61249763 Msa0033650:CDS 50.0%
! CTGATCCTCCACTGCTCTTT+TGG + chr1_1:61249755-61249774 None:intergenic 50.0%
AGGTCTACTTTGCGGAGGTA+AGG + chr1_1:61249843-61249862 None:intergenic 50.0%
! CTAAGGCATCAGAGAGCTCT+GGG + chr1_1:61249884-61249903 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG - chr1_1:61250737-61250756 Msa0033650:CDS 50.0%
GCTTGTCGGTGATGTACCAT+GGG - chr1_1:61250738-61250757 Msa0033650:CDS 50.0%
GGAAAGGAAGCCATTGGACT+CGG - chr1_1:61251062-61251081 Msa0033650:five_prime_UTR 50.0%
! CAAGAGCACGTTGAAGTGGG+GGG + chr1_1:61248453-61248472 None:intergenic 55.0%
! GCAAGAGCACGTTGAAGTGG+GGG + chr1_1:61248454-61248473 None:intergenic 55.0%
! GGCAAGAGCACGTTGAAGTG+GGG + chr1_1:61248455-61248474 None:intergenic 55.0%
AGGCTAGGACTTGGATTGCC+AGG - chr1_1:61248630-61248649 Msa0033650:intron 55.0%
GGCTAGGACTTGGATTGCCA+GGG - chr1_1:61248631-61248650 Msa0033650:intron 55.0%
ATAGGGCACAAGTGGTAGGG+TGG - chr1_1:61249691-61249710 Msa0033650:CDS 55.0%
TTACGGAATGACCGCACTGG+TGG + chr1_1:61249717-61249736 None:intergenic 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG + chr1_1:61249885-61249904 None:intergenic 55.0%
GATGGCGACTGGATGCTTGT+CGG - chr1_1:61250724-61250743 Msa0033650:CDS 55.0%
GCTGCCCAAAAGAGCAGTGG+AGG - chr1_1:61249747-61249766 Msa0033650:CDS 60.0%
TGGTAGGGTGGCCACCAGTG+CGG - chr1_1:61249703-61249722 Msa0033650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61248435 61251088 61248435 ID=Msa0033650;Name=Msa0033650
chr1_1 mRNA 61248435 61251088 61248435 ID=Msa0033650-mRNA-1;Parent=Msa0033650;Name=Msa0033650-mRNA-1;_AED=0.25;_eAED=0.25;_QI=138|1|0.75|1|1|1|4|0|232
chr1_1 exon 61248435 61248501 61248435 ID=Msa0033650-mRNA-1:exon:19233;Parent=Msa0033650-mRNA-1
chr1_1 exon 61248762 61248900 61248762 ID=Msa0033650-mRNA-1:exon:19232;Parent=Msa0033650-mRNA-1
chr1_1 exon 61249593 61249828 61249593 ID=Msa0033650-mRNA-1:exon:19231;Parent=Msa0033650-mRNA-1
chr1_1 exon 61250694 61251088 61250694 ID=Msa0033650-mRNA-1:exon:19230;Parent=Msa0033650-mRNA-1
chr1_1 five_prime_UTR 61250951 61251088 61250951 ID=Msa0033650-mRNA-1:five_prime_utr;Parent=Msa0033650-mRNA-1
chr1_1 CDS 61250694 61250950 61250694 ID=Msa0033650-mRNA-1:cds;Parent=Msa0033650-mRNA-1
chr1_1 CDS 61249593 61249828 61249593 ID=Msa0033650-mRNA-1:cds;Parent=Msa0033650-mRNA-1
chr1_1 CDS 61248762 61248900 61248762 ID=Msa0033650-mRNA-1:cds;Parent=Msa0033650-mRNA-1
chr1_1 CDS 61248435 61248501 61248435 ID=Msa0033650-mRNA-1:cds;Parent=Msa0033650-mRNA-1
Gene Sequence

>Msa0033650

ATGGAAGTTGCAGGGCTGAAAAAGGAGGAAAAGATGGTGTTTGAGGAAACTGAACTGAGGCTAGGACTTGGATTGCCAGGGAAAACAACAGAAGTAATAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTGGATTTGAAGCTTAATCTTTCTACTAAGGAAGGAGCAACAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGTCAAGCCTCCTGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCCGTAAGAACATGTTTGCTGCCCAAAAGAGCAGTGGAGGATCAGAAGAAAGTGAAAAGAAGAATAGCACTAATCCAATAAGCTTTGTGAAAGTTAGTATGGATGGAGCACCTTACCTCCGCAAAGTAGACCTAAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGCCAAAATGTTTAACTCCTTTACCACAGGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGGTTAG

Protein sequence

>Msa0033650

MEVAGLKKEEKMVFEETELRLGLGLPGKTTEVIRKRGFSETESESETNTVDLKLNLSTKEGATDPQFKPKEKALLLSDSGVKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGSEESEKKNSTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLG*