AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033600 MtrunA17_Chr1g0184791 96.104 231 8 1 3 232 4 234 1.15e-163 451
Msa0033600 MtrunA17_Chr7g0260641 68.571 245 58 7 1 232 1 239 5.54e-99 288
Msa0033600 MtrunA17_Chr1g0187921 64.348 230 57 7 14 232 10 225 8.74e-88 259
Msa0033600 MtrunA17_Chr1g0190711 62.232 233 67 6 14 232 17 242 2.99e-83 248
Msa0033600 MtrunA17_Chr5g0428141 64.667 150 49 3 83 232 191 336 9.63e-62 196
Msa0033600 MtrunA17_Chr5g0411501 62.658 158 54 4 77 232 170 324 1.33e-61 196
Msa0033600 MtrunA17_Chr2g0331411 64.901 151 48 4 83 231 167 314 3.50e-60 192
Msa0033600 MtrunA17_Chr8g0366881 62.821 156 52 4 79 232 186 337 1.34e-59 191
Msa0033600 MtrunA17_Chr6g0486121 51.759 199 82 4 35 232 58 243 4.80e-59 187
Msa0033600 MtrunA17_Chr8g0390281 60.000 155 53 4 81 231 132 281 3.57e-56 181
Msa0033600 MtrunA17_Chr1g0166011 44.105 229 74 6 12 232 1 183 1.53e-51 165
Msa0033600 MtrunA17_Chr1g0184801 43.333 240 90 7 1 232 1 202 1.86e-51 166
Msa0033600 MtrunA17_Chr1g0187961 41.739 230 68 7 9 231 8 178 2.14e-48 157
Msa0033600 MtrunA17_Chr7g0260621 42.735 234 87 6 9 232 6 202 1.17e-47 156
Msa0033600 MtrunA17_Chr4g0004181 50.676 148 40 5 86 232 52 167 5.45e-35 122
Msa0033600 MtrunA17_Chr2g0332141 57.426 101 32 4 126 223 8 100 2.09e-32 114
Msa0033600 MtrunA17_Chr2g0330951 34.100 261 135 8 6 232 4 261 5.14e-30 112
Msa0033600 MtrunA17_Chr8g0340731 33.984 256 130 6 7 224 3 257 1.33e-29 111
Msa0033600 MtrunA17_Chr1g0183251 34.538 249 108 8 21 232 27 257 2.71e-26 102
Msa0033600 MtrunA17_Chr4g0069561 36.129 155 65 6 80 228 58 184 7.41e-20 83.6
Msa0033600 MtrunA17_Chr3g0137601 30.282 142 79 3 88 228 88 210 1.81e-18 80.5
Msa0033600 MtrunA17_Chr1g0193861 38.835 103 50 1 122 224 81 170 3.90e-17 76.3
Msa0033600 MtrunA17_Chr7g0270851 32.824 131 68 3 94 224 45 155 5.43e-16 72.8
Msa0033600 MtrunA17_Chr4g0064131 29.710 138 74 3 89 226 93 207 9.81e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033600 AT4G14550.2 63.793 232 58 8 12 232 1 217 2.13e-87 258
Msa0033600 AT4G14550.1 63.636 231 58 8 12 231 1 216 9.48e-87 256
Msa0033600 AT3G23050.1 63.913 230 54 8 21 232 13 231 9.63e-87 257
Msa0033600 AT3G04730.1 60.256 234 64 7 14 231 4 224 2.91e-83 248
Msa0033600 AT1G04250.1 60.793 227 58 9 18 232 11 218 8.69e-80 239
Msa0033600 AT4G14550.3 61.905 210 54 8 12 210 1 195 1.06e-72 220
Msa0033600 AT3G23050.2 62.679 209 49 8 21 211 13 210 2.20e-72 219
Msa0033600 AT5G65670.2 53.333 210 82 6 35 232 120 325 1.33e-60 194
Msa0033600 AT5G65670.1 53.333 210 82 6 35 232 120 325 1.58e-60 193
Msa0033600 AT4G29080.1 58.989 178 60 5 63 232 122 294 4.29e-60 191
Msa0033600 AT2G22670.5 59.211 152 57 3 83 232 160 308 1.06e-55 181
Msa0033600 AT2G22670.2 59.211 152 57 3 83 232 160 308 1.06e-55 181
Msa0033600 AT2G22670.3 58.940 151 57 3 83 231 160 307 9.14e-55 178
Msa0033600 AT2G22670.1 58.940 151 57 3 83 231 160 307 9.14e-55 178
Msa0033600 AT2G22670.4 58.940 151 57 4 83 231 177 324 1.25e-54 178
Msa0033600 AT5G43700.1 58.667 150 36 5 84 232 58 182 6.30e-51 164
Msa0033600 AT1G04240.1 46.667 225 79 9 9 232 2 186 1.31e-49 160
Msa0033600 AT1G04240.2 46.667 225 79 9 9 232 102 286 1.71e-48 161
Msa0033600 AT3G23030.1 42.793 222 49 4 21 231 16 170 1.71e-48 157
Msa0033600 AT3G23030.2 42.793 222 49 4 21 231 103 257 1.08e-47 158
Msa0033600 AT4G14550.4 57.576 165 45 7 12 165 1 151 2.07e-44 147
Msa0033600 AT3G23050.3 57.317 164 42 7 21 166 13 166 3.26e-43 144
Msa0033600 AT4G14560.1 45.833 216 56 7 14 228 9 164 2.24e-40 136
Msa0033600 AT3G15540.1 40.175 229 92 7 8 232 2 189 2.52e-40 137
Msa0033600 AT2G33310.3 43.784 185 82 5 65 232 52 231 6.28e-38 132
Msa0033600 AT2G33310.1 43.784 185 82 5 65 232 52 231 6.28e-38 132
Msa0033600 AT1G15580.1 40.094 212 62 6 14 224 10 157 8.77e-38 130
Msa0033600 AT1G04550.2 43.850 187 76 5 65 231 46 223 2.05e-37 131
Msa0033600 AT2G33310.2 43.548 186 82 6 65 232 52 232 1.94e-36 129
Msa0033600 AT1G52830.1 36.638 232 90 8 9 232 3 185 1.15e-33 120
Msa0033600 AT3G16500.1 36.245 229 120 7 15 227 34 252 6.79e-33 120
Msa0033600 AT3G16500.2 36.245 229 120 6 15 227 34 252 7.68e-33 120
Msa0033600 AT4G28640.3 44.375 160 71 5 87 232 87 242 9.92e-33 119
Msa0033600 AT4G28640.1 44.304 158 70 5 87 230 87 240 2.20e-32 118
Msa0033600 AT4G28640.2 44.304 158 70 5 87 230 87 240 2.72e-31 117
Msa0033600 AT1G04100.1 40.588 170 70 6 90 232 95 260 5.66e-29 110
Msa0033600 AT1G51950.1 39.634 164 72 6 85 227 93 250 6.28e-27 104
Msa0033600 AT5G25890.1 36.986 146 68 2 87 232 47 168 9.28e-24 94.0
Msa0033600 AT3G17600.1 31.875 160 78 4 69 224 22 154 1.53e-20 85.1
Msa0033600 AT3G62100.1 38.532 109 51 2 118 224 74 168 1.69e-17 77.4
Msa0033600 AT2G46990.1 40.404 99 45 1 126 224 86 170 3.30e-17 76.6
Msa0033600 AT4G32280.1 26.627 169 76 4 87 226 93 242 2.99e-15 73.2
Msa0033600 AT4G32280.2 32.673 101 49 2 126 226 119 200 1.31e-14 70.5
Msa0033600 AT1G04550.1 36.066 122 59 3 65 167 46 167 4.04e-13 65.9
Msa0033600 AT2G46990.2 40.698 86 37 1 126 211 86 157 2.04e-12 63.5
Msa0033600 AT3G62100.2 37.500 96 44 2 118 211 74 155 3.54e-12 62.8
Msa0033600 AT1G15050.2 31.967 122 68 2 108 229 44 150 4.32e-11 59.7
Msa0033600 AT1G15050.1 29.630 135 76 3 95 229 67 182 9.84e-11 59.3

Find 73 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTCCACTGCTCTTT+TGG 0.091227 1_1:-61184574 None:intergenic
CTAACTTTCACAAAGCTTAT+TGG 0.130204 1_1:-61184626 None:intergenic
GGTAAAGGAGTTAAACATTT+TGG 0.221116 1_1:-61184726 None:intergenic
GCTCTTCTGCTCTCTGATTC+TGG 0.233246 1_1:+61183614 Msa0033600:CDS
GGTAACTCTTGTACATCTTT+AGG 0.262824 1_1:-61184682 None:intergenic
AAGCTTTGTGAAAGTTAGTA+TGG 0.303935 1_1:+61184631 Msa0033600:CDS
TTGTGAATCCCAAGGCATTA+AGG 0.313394 1_1:+61185448 Msa0033600:CDS
GGAAAACAACAGAAGTAATA+AGG 0.347716 1_1:+61183477 Msa0033600:CDS
GGAAGTTGCAGGGCTGAAAA+AGG 0.353058 1_1:+61183400 Msa0033600:CDS
AGCAGAAGAGCCTTCTCCTT+TGG 0.360991 1_1:-61183602 None:intergenic
CCATCTTTGTCTTCATAAGT+TGG 0.383939 1_1:-61185527 None:intergenic
CATGAAATCCTTAATGCCTT+GGG 0.384985 1_1:-61185456 None:intergenic
GAAGCTTAATCTTTCTACTA+AGG 0.400977 1_1:+61183553 Msa0033600:CDS
TCATGAAATCCTTAATGCCT+TGG 0.406074 1_1:-61185457 None:intergenic
CATCTTTGTCTTCATAAGTT+GGG 0.414636 1_1:-61185526 None:intergenic
AGGCTAGGACTTGGATTGCC+AGG 0.417824 1_1:+61183455 Msa0033600:CDS
TTCTCCTTTGGCTTAAATTG+TGG 0.418936 1_1:-61183590 None:intergenic
AGCATTCAGTGTGATTTGAT+TGG 0.424793 1_1:-61183333 None:intergenic
AACTTGATAATGGAAGTTGC+AGG 0.451323 1_1:+61183389 Msa0033600:exon
GAATGAGAGTAATAAGTTGA+TGG 0.457906 1_1:+61185478 Msa0033600:CDS
GCTAAGGCATCAGAGAGCTC+TGG 0.465095 1_1:-61184704 None:intergenic
GGAGGAAAAGATGGTGTTTG+AGG 0.477721 1_1:+61183421 Msa0033600:CDS
AGGTCTACTTTGCGGAGGTA+AGG 0.480055 1_1:-61184662 None:intergenic
GGGCAGCAAACATGTTCTTA+CGG 0.483487 1_1:-61184553 None:intergenic
CTTAATCTTTCTACTAAGGA+AGG 0.487124 1_1:+61183557 Msa0033600:CDS
GGAAAGGAAGCCATTGGACT+CGG 0.495438 1_1:+61185882 Msa0033600:CDS
TAATGAACAACTTACTTAGC+AGG 0.499421 1_1:-61183647 None:intergenic
TTTGTGACAATAATAGAGGA+AGG 0.505887 1_1:-61183310 None:intergenic
ATAGAGGAAGGGGTATAGAA+AGG 0.512057 1_1:-61183298 None:intergenic
AGGCAAGAGCACGTTGAAGT+GGG 0.512186 1_1:-61183278 None:intergenic
ACATCTTTAGGTCTACTTTG+CGG 0.517949 1_1:-61184670 None:intergenic
CTAAGGCATCAGAGAGCTCT+GGG 0.519415 1_1:-61184703 None:intergenic
ATGAAAGGAAAGGAAGCCAT+TGG 0.526527 1_1:+61185876 Msa0033600:CDS
TTGGTTTGTGACAATAATAG+AGG 0.530133 1_1:-61183314 None:intergenic
TTTGTGAAAGTTAGTATGGA+TGG 0.531648 1_1:+61184635 Msa0033600:CDS
TGTGACAATAATAGAGGAAG+GGG 0.540700 1_1:-61183308 None:intergenic
ACAATTTAAGCCAAAGGAGA+AGG 0.543283 1_1:+61183592 Msa0033600:CDS
ACTGAACTGAGGCTAGGACT+TGG 0.544230 1_1:+61183446 Msa0033600:CDS
ATGTTTAACTCCTTTACCAC+AGG 0.544923 1_1:+61184731 Msa0033600:CDS
ACGTATAGGGCACAAGTGGT+AGG 0.553577 1_1:+61184509 Msa0033600:intron
CCAACTTATGAAGACAAAGA+TGG 0.567272 1_1:+61185527 Msa0033600:CDS
CGTATAGGGCACAAGTGGTA+GGG 0.568467 1_1:+61184510 Msa0033600:intron
AAGGCAAGAGCACGTTGAAG+TGG 0.578771 1_1:-61183279 None:intergenic
TGCTTGTCGGTGATGTACCA+TGG 0.581796 1_1:+61185558 Msa0033600:CDS
TTGTGACAATAATAGAGGAA+GGG 0.584516 1_1:-61183309 None:intergenic
GCAAGAGCACGTTGAAGTGG+GGG 0.588919 1_1:-61183276 None:intergenic
ATGAAGACAAAGATGGCGAC+TGG 0.589440 1_1:+61185534 Msa0033600:CDS
TTCATAAGTTGGGACATAGT+CGG 0.596025 1_1:-61185516 None:intergenic
TTTACGTATCATGAAAGGAA+AGG 0.596184 1_1:+61185866 Msa0033600:CDS
AGATCCACAATTTAAGCCAA+AGG 0.598269 1_1:+61183586 Msa0033600:CDS
GGCTAGGACTTGGATTGCCA+GGG 0.598855 1_1:+61183456 Msa0033600:CDS
AAGCGTTTACGTATCATGAA+AGG 0.600017 1_1:+61185861 Msa0033600:CDS
GGCAAGAGCACGTTGAAGTG+GGG 0.601053 1_1:-61183277 None:intergenic
GAATTGAAAACTTACTCCCA+TGG 0.601391 1_1:-61185575 None:intergenic
GATGGCGACTGGATGCTTGT+CGG 0.601801 1_1:+61185545 Msa0033600:CDS
TTACGGAATGACCGCACTGG+TGG 0.603134 1_1:-61184536 None:intergenic
GCTTGTCGGTGATGTACCAT+GGG 0.605812 1_1:+61185559 Msa0033600:CDS
GAGGAAACTGAACTGAGGCT+AGG 0.606535 1_1:+61183440 Msa0033600:CDS
TTCTTACGGAATGACCGCAC+TGG 0.606920 1_1:-61184539 None:intergenic
CTGTACGTATAGGGCACAAG+TGG 0.611935 1_1:+61184505 Msa0033600:intron
ACAGAAGTAATAAGGAAGAG+AGG 0.613004 1_1:+61183485 Msa0033600:CDS
GAAGGAAATTGTGAATCCCA+AGG 0.620096 1_1:+61185440 Msa0033600:intron
GCTGCCCAAAAGAGCAGTGG+AGG 0.620267 1_1:+61184569 Msa0033600:CDS
TGAACAACTTACTTAGCAGG+AGG 0.624213 1_1:-61183644 None:intergenic
ACTTGATAATGGAAGTTGCA+GGG 0.628469 1_1:+61183390 Msa0033600:exon
ATCATACTAACCGAGTCCAA+TGG 0.634399 1_1:-61185892 None:intergenic
CAAGAGCACGTTGAAGTGGG+GGG 0.644816 1_1:-61183275 None:intergenic
TCTTTAGGTCTACTTTGCGG+AGG 0.646104 1_1:-61184667 None:intergenic
TTTGCTGCCCAAAAGAGCAG+TGG 0.650500 1_1:+61184566 Msa0033600:CDS
TGGTAGGGTGGCCACCAGTG+CGG 0.683033 1_1:+61184525 Msa0033600:CDS
ATAGGGCACAAGTGGTAGGG+TGG 0.690264 1_1:+61184513 Msa0033600:intron
TGAAAGTGAAACAAACACTG+TGG 0.729821 1_1:+61183526 Msa0033600:CDS
TGTTTGAGGAAACTGAACTG+AGG 0.788719 1_1:+61183435 Msa0033600:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAAATATTTATTTTT+TGG + chr1_1:61185702-61185721 Msa0033600:intron 0.0%
!! ATATAAATTATTAATCACAA+AGG - chr1_1:61183843-61183862 None:intergenic 10.0%
!!! TTTTAATTGTGAATTAAATA+TGG + chr1_1:61184169-61184188 Msa0033600:intron 10.0%
!!! GAACTATTTTAAAATTTATA+TGG - chr1_1:61184219-61184238 None:intergenic 10.0%
!!! TTAAAATAGTTCTATATTAA+AGG + chr1_1:61184227-61184246 Msa0033600:intron 10.0%
!! AAATTAAATTTATTCTTTCA+TGG - chr1_1:61185311-61185330 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG + chr1_1:61185319-61185338 Msa0033600:intron 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG + chr1_1:61185320-61185339 Msa0033600:intron 10.0%
!! GTAATGAAATAAATAAAATA+GGG - chr1_1:61185629-61185648 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAT+AGG - chr1_1:61185630-61185649 None:intergenic 10.0%
!!! TTATGTTCCAATTAATTTTA+TGG - chr1_1:61183777-61183796 None:intergenic 15.0%
!!! AAAATTTGCTATATTGTTAT+GGG - chr1_1:61183960-61183979 None:intergenic 15.0%
!! GATAACAATAGTATATAATA+AGG - chr1_1:61184122-61184141 None:intergenic 15.0%
!! AAACTATCAACTTTATAATA+AGG + chr1_1:61184265-61184284 Msa0033600:intron 15.0%
!! AATTTCATTGCTAAAATAAA+TGG + chr1_1:61184359-61184378 Msa0033600:intron 15.0%
!! TGATGAAATTCAATAAATAA+AGG + chr1_1:61185004-61185023 Msa0033600:intron 15.0%
!!! AATAAATAAAGGTATAATAG+CGG + chr1_1:61185015-61185034 Msa0033600:intron 15.0%
!! ATTACATACAATAAAATTTG+TGG - chr1_1:61185225-61185244 None:intergenic 15.0%
!! TTTATATTGAAATTGATTGA+AGG + chr1_1:61185422-61185441 Msa0033600:intron 15.0%
!!! TTCCAATTAATTTTATGGAT+CGG - chr1_1:61183772-61183791 None:intergenic 20.0%
!! AATTATTAATCACAAAGGAA+TGG - chr1_1:61183838-61183857 None:intergenic 20.0%
!!! AAATTTGCTATATTGTTATG+GGG - chr1_1:61183959-61183978 None:intergenic 20.0%
!!! CAAAATTTGCTATATTGTTA+TGG - chr1_1:61183961-61183980 None:intergenic 20.0%
!! TACTTATAGAAAAAAGTAAG+AGG - chr1_1:61184027-61184046 None:intergenic 20.0%
!! GTACAATAAAAACATATAGT+AGG - chr1_1:61184299-61184318 None:intergenic 20.0%
!! AGATAAAAAAAAATTACCTG+TGG - chr1_1:61184750-61184769 None:intergenic 20.0%
!!! ATTTTAGTATATGTTAGATG+AGG + chr1_1:61184777-61184796 Msa0033600:intron 20.0%
!!! TTTTAGTATATGTTAGATGA+GGG + chr1_1:61184778-61184797 Msa0033600:intron 20.0%
!! AATCATACAAAAACCTTAAA+CGG - chr1_1:61184888-61184907 None:intergenic 20.0%
!!! ATATTCTAAAATGATGTATG+TGG + chr1_1:61185062-61185081 Msa0033600:intron 20.0%
!! GCAATATTAAGACAAAATTA+AGG - chr1_1:61185268-61185287 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG + chr1_1:61185269-61185288 Msa0033600:intron 20.0%
!! AGATCAATATCAAGTATTAA+TGG + chr1_1:61185385-61185404 Msa0033600:intron 20.0%
! AGAGAGAAAAAACTTGATAA+TGG + chr1_1:61183379-61183398 Msa0033600:exon 25.0%
! TTACGCATGCTTAAATATTT+AGG - chr1_1:61183674-61183693 None:intergenic 25.0%
! TTCCGATCCATAAAATTAAT+TGG + chr1_1:61183767-61183786 Msa0033600:intron 25.0%
!! TAGTTCTATATTAAAGGACA+AGG + chr1_1:61184233-61184252 Msa0033600:intron 25.0%
!! GAAAATTCTCAAGTTTTTGA+AGG - chr1_1:61184425-61184444 None:intergenic 25.0%
! AAAAAAATTACCTGTGGTAA+AGG - chr1_1:61184744-61184763 None:intergenic 25.0%
!! ACTTTTGCTTATAATAGTGA+CGG + chr1_1:61185133-61185152 Msa0033600:intron 25.0%
!!! AGAAGACATATTATTTTGAG+AGG + chr1_1:61185181-61185200 Msa0033600:intron 25.0%
!!! GAAGACATATTATTTTGAGA+GGG + chr1_1:61185182-61185201 Msa0033600:intron 25.0%
! TTCGTTAGCTATATATATTG+TGG - chr1_1:61185794-61185813 None:intergenic 25.0%
TTGTGACAATAATAGAGGAA+GGG - chr1_1:61183312-61183331 None:intergenic 30.0%
TTTGTGACAATAATAGAGGA+AGG - chr1_1:61183313-61183332 None:intergenic 30.0%
!! TTGGTTTGTGACAATAATAG+AGG - chr1_1:61183317-61183336 None:intergenic 30.0%
GGAAAACAACAGAAGTAATA+AGG + chr1_1:61183477-61183496 Msa0033600:CDS 30.0%
GAAGCTTAATCTTTCTACTA+AGG + chr1_1:61183553-61183572 Msa0033600:CDS 30.0%
CTTAATCTTTCTACTAAGGA+AGG + chr1_1:61183557-61183576 Msa0033600:CDS 30.0%
TAATGAACAACTTACTTAGC+AGG - chr1_1:61183650-61183669 None:intergenic 30.0%
ATAGAAAAAAGTAAGAGGCA+AGG - chr1_1:61184022-61184041 None:intergenic 30.0%
AGTTCATGATTGTATTGCTT+TGG - chr1_1:61184399-61184418 None:intergenic 30.0%
AAAGCAATACAATCATGAAC+TGG + chr1_1:61184398-61184417 Msa0033600:intron 30.0%
ACTAATTGAACTGTACGTAT+AGG + chr1_1:61184495-61184514 Msa0033600:intron 30.0%
CTAATTGAACTGTACGTATA+GGG + chr1_1:61184496-61184515 Msa0033600:intron 30.0%
CTAACTTTCACAAAGCTTAT+TGG - chr1_1:61184629-61184648 None:intergenic 30.0%
! AAGCTTTGTGAAAGTTAGTA+TGG + chr1_1:61184631-61184650 Msa0033600:CDS 30.0%
TTTGTGAAAGTTAGTATGGA+TGG + chr1_1:61184635-61184654 Msa0033600:CDS 30.0%
! GGTAAAGGAGTTAAACATTT+TGG - chr1_1:61184729-61184748 None:intergenic 30.0%
CTCAAAATAATAGCCGTTTA+AGG + chr1_1:61184872-61184891 Msa0033600:intron 30.0%
! CTTTTGCTTATAATAGTGAC+GGG + chr1_1:61185134-61185153 Msa0033600:intron 30.0%
! GAATGAGAGTAATAAGTTGA+TGG + chr1_1:61185478-61185497 Msa0033600:CDS 30.0%
CATCTTTGTCTTCATAAGTT+GGG - chr1_1:61185529-61185548 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG + chr1_1:61185597-61185616 Msa0033600:intron 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG + chr1_1:61185820-61185839 Msa0033600:intron 30.0%
TTTACGTATCATGAAAGGAA+AGG + chr1_1:61185866-61185885 Msa0033600:CDS 30.0%
TGTGACAATAATAGAGGAAG+GGG - chr1_1:61183311-61183330 None:intergenic 35.0%
AGCATTCAGTGTGATTTGAT+TGG - chr1_1:61183336-61183355 None:intergenic 35.0%
!! AACTTGATAATGGAAGTTGC+AGG + chr1_1:61183389-61183408 Msa0033600:exon 35.0%
!! ACTTGATAATGGAAGTTGCA+GGG + chr1_1:61183390-61183409 Msa0033600:exon 35.0%
!!! ATTACTTCTGTTGTTTTCCC+TGG - chr1_1:61183476-61183495 None:intergenic 35.0%
ACAGAAGTAATAAGGAAGAG+AGG + chr1_1:61183485-61183504 Msa0033600:CDS 35.0%
TGAAAGTGAAACAAACACTG+TGG + chr1_1:61183526-61183545 Msa0033600:CDS 35.0%
AGATCCACAATTTAAGCCAA+AGG + chr1_1:61183586-61183605 Msa0033600:CDS 35.0%
! TTCTCCTTTGGCTTAAATTG+TGG - chr1_1:61183593-61183612 None:intergenic 35.0%
ACAATTTAAGCCAAAGGAGA+AGG + chr1_1:61183592-61183611 Msa0033600:CDS 35.0%
GAGTACACATCAAGACTAAT+TGG - chr1_1:61183935-61183954 None:intergenic 35.0%
! GAAGTGCTTGAGTATATACA+TGG - chr1_1:61184475-61184494 None:intergenic 35.0%
ACATCTTTAGGTCTACTTTG+CGG - chr1_1:61184673-61184692 None:intergenic 35.0%
GGTAACTCTTGTACATCTTT+AGG - chr1_1:61184685-61184704 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG - chr1_1:61184723-61184742 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG + chr1_1:61184731-61184750 Msa0033600:CDS 35.0%
AGTGAATGAGCGAAATGATA+AGG - chr1_1:61184820-61184839 None:intergenic 35.0%
CATGAAATCCTTAATGCCTT+GGG - chr1_1:61185459-61185478 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG - chr1_1:61185460-61185479 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG - chr1_1:61185519-61185538 None:intergenic 35.0%
CCATCTTTGTCTTCATAAGT+TGG - chr1_1:61185530-61185549 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG + chr1_1:61185527-61185546 Msa0033600:CDS 35.0%
GAATTGAAAACTTACTCCCA+TGG - chr1_1:61185578-61185597 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG - chr1_1:61185607-61185626 None:intergenic 35.0%
TGAAATTAGTACACGTACTC+AGG - chr1_1:61185676-61185695 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG - chr1_1:61185788-61185807 None:intergenic 35.0%
AAGCGTTTACGTATCATGAA+AGG + chr1_1:61185861-61185880 Msa0033600:CDS 35.0%
! ATAGAGGAAGGGGTATAGAA+AGG - chr1_1:61183301-61183320 None:intergenic 40.0%
GCTGAAAAAGGAGGAAAAGA+TGG + chr1_1:61183412-61183431 Msa0033600:CDS 40.0%
TGTTTGAGGAAACTGAACTG+AGG + chr1_1:61183435-61183454 Msa0033600:CDS 40.0%
TGAACAACTTACTTAGCAGG+AGG - chr1_1:61183647-61183666 None:intergenic 40.0%
ATCACAAAGGAATGGAACAC+AGG - chr1_1:61183830-61183849 None:intergenic 40.0%
CGTGCATGTGAATATACACA+TGG + chr1_1:61185361-61185380 Msa0033600:intron 40.0%
GAAGGAAATTGTGAATCCCA+AGG + chr1_1:61185440-61185459 Msa0033600:intron 40.0%
! TTGTGAATCCCAAGGCATTA+AGG + chr1_1:61185448-61185467 Msa0033600:CDS 40.0%
ACGTACTCAGGTGTAATTGT+TGG - chr1_1:61185664-61185683 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG + chr1_1:61185876-61185895 Msa0033600:CDS 40.0%
GGAGGAAAAGATGGTGTTTG+AGG + chr1_1:61183421-61183440 Msa0033600:CDS 45.0%
GGGCAGCAAACATGTTCTTA+CGG - chr1_1:61184556-61184575 None:intergenic 45.0%
! TGATCCTCCACTGCTCTTTT+GGG - chr1_1:61184576-61184595 None:intergenic 45.0%
TCTTTAGGTCTACTTTGCGG+AGG - chr1_1:61184670-61184689 None:intergenic 45.0%
ATGAAGACAAAGATGGCGAC+TGG + chr1_1:61185534-61185553 Msa0033600:CDS 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG - chr1_1:61185769-61185788 None:intergenic 45.0%
!! AAAAATAAAAAAAAATAGTA+AGG - chr1_1:61184051-61184070 None:intergenic 5.0%
!!! ACTATTTTTTTTTATTTTTT+TGG + chr1_1:61184052-61184071 Msa0033600:intron 5.0%
!! AAAAAAAAAATAGTATAATA+AGG - chr1_1:61184084-61184103 None:intergenic 5.0%
! AGGCAAGAGCACGTTGAAGT+GGG - chr1_1:61183281-61183300 None:intergenic 50.0%
! AAGGCAAGAGCACGTTGAAG+TGG - chr1_1:61183282-61183301 None:intergenic 50.0%
GGAAGTTGCAGGGCTGAAAA+AGG + chr1_1:61183400-61183419 Msa0033600:CDS 50.0%
AGTTGCAGGGCTGAAAAAGG+AGG + chr1_1:61183403-61183422 Msa0033600:CDS 50.0%
GAGGAAACTGAACTGAGGCT+AGG + chr1_1:61183440-61183459 Msa0033600:CDS 50.0%
ACTGAACTGAGGCTAGGACT+TGG + chr1_1:61183446-61183465 Msa0033600:CDS 50.0%
AGCAGAAGAGCCTTCTCCTT+TGG - chr1_1:61183605-61183624 None:intergenic 50.0%
GCTCTTCTGCTCTCTGATTC+TGG + chr1_1:61183614-61183633 Msa0033600:CDS 50.0%
CTGTACGTATAGGGCACAAG+TGG + chr1_1:61184505-61184524 Msa0033600:intron 50.0%
ACGTATAGGGCACAAGTGGT+AGG + chr1_1:61184509-61184528 Msa0033600:intron 50.0%
CGTATAGGGCACAAGTGGTA+GGG + chr1_1:61184510-61184529 Msa0033600:intron 50.0%
TTCTTACGGAATGACCGCAC+TGG - chr1_1:61184542-61184561 None:intergenic 50.0%
TTTGCTGCCCAAAAGAGCAG+TGG + chr1_1:61184566-61184585 Msa0033600:CDS 50.0%
! CTGATCCTCCACTGCTCTTT+TGG - chr1_1:61184577-61184596 None:intergenic 50.0%
AGGTCTACTTTGCGGAGGTA+AGG - chr1_1:61184665-61184684 None:intergenic 50.0%
! CTAAGGCATCAGAGAGCTCT+GGG - chr1_1:61184706-61184725 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG + chr1_1:61185558-61185577 Msa0033600:CDS 50.0%
GCTTGTCGGTGATGTACCAT+GGG + chr1_1:61185559-61185578 Msa0033600:CDS 50.0%
GGAAAGGAAGCCATTGGACT+CGG + chr1_1:61185882-61185901 Msa0033600:CDS 50.0%
! CAAGAGCACGTTGAAGTGGG+GGG - chr1_1:61183278-61183297 None:intergenic 55.0%
! GCAAGAGCACGTTGAAGTGG+GGG - chr1_1:61183279-61183298 None:intergenic 55.0%
! GGCAAGAGCACGTTGAAGTG+GGG - chr1_1:61183280-61183299 None:intergenic 55.0%
AGGCTAGGACTTGGATTGCC+AGG + chr1_1:61183455-61183474 Msa0033600:CDS 55.0%
GGCTAGGACTTGGATTGCCA+GGG + chr1_1:61183456-61183475 Msa0033600:CDS 55.0%
ATAGGGCACAAGTGGTAGGG+TGG + chr1_1:61184513-61184532 Msa0033600:intron 55.0%
TTACGGAATGACCGCACTGG+TGG - chr1_1:61184539-61184558 None:intergenic 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG - chr1_1:61184707-61184726 None:intergenic 55.0%
GATGGCGACTGGATGCTTGT+CGG + chr1_1:61185545-61185564 Msa0033600:CDS 55.0%
GCTGCCCAAAAGAGCAGTGG+AGG + chr1_1:61184569-61184588 Msa0033600:CDS 60.0%
TGGTAGGGTGGCCACCAGTG+CGG + chr1_1:61184525-61184544 Msa0033600:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61183260 61185908 61183260 ID=Msa0033600;Name=Msa0033600
chr1_1 mRNA 61183260 61185908 61183260 ID=Msa0033600-mRNA-1;Parent=Msa0033600;Name=Msa0033600-mRNA-1;_AED=0.25;_eAED=0.25;_QI=138|1|0.75|1|1|1|4|0|232
chr1_1 exon 61183260 61183654 61183260 ID=Msa0033600-mRNA-1:exon:19214;Parent=Msa0033600-mRNA-1
chr1_1 exon 61184517 61184752 61184517 ID=Msa0033600-mRNA-1:exon:19215;Parent=Msa0033600-mRNA-1
chr1_1 exon 61185444 61185582 61185444 ID=Msa0033600-mRNA-1:exon:19216;Parent=Msa0033600-mRNA-1
chr1_1 exon 61185842 61185908 61185842 ID=Msa0033600-mRNA-1:exon:19217;Parent=Msa0033600-mRNA-1
chr1_1 five_prime_UTR 61183260 61183397 61183260 ID=Msa0033600-mRNA-1:five_prime_utr;Parent=Msa0033600-mRNA-1
chr1_1 CDS 61183398 61183654 61183398 ID=Msa0033600-mRNA-1:cds;Parent=Msa0033600-mRNA-1
chr1_1 CDS 61184517 61184752 61184517 ID=Msa0033600-mRNA-1:cds;Parent=Msa0033600-mRNA-1
chr1_1 CDS 61185444 61185582 61185444 ID=Msa0033600-mRNA-1:cds;Parent=Msa0033600-mRNA-1
chr1_1 CDS 61185842 61185908 61185842 ID=Msa0033600-mRNA-1:cds;Parent=Msa0033600-mRNA-1
Gene Sequence

>Msa0033600

ATGGAAGTTGCAGGGCTGAAAAAGGAGGAAAAGATGGTGTTTGAGGAAACTGAACTGAGGCTAGGACTTGGATTGCCAGGGAAAACAACAGAAGTAATAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTGGATTTGAAGCTTAATCTTTCTACTAAGGAAGGAGCAACAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGTCAAGCCTCCTGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCCGTAAGAACATGTTTGCTGCCCAAAAGAGCAGTGGAGGATCAGAAGAAAGTGAAAAGAAGAATAGCACTAATCCAATAAGCTTTGTGAAAGTTAGTATGGATGGAGCACCTTACCTCCGCAAAGTAGACCTAAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTAGCCAAAATGTTTAACTCCTTTACCACAGGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGGTTAG

Protein sequence

>Msa0033600

MEVAGLKKEEKMVFEETELRLGLGLPGKTTEVIRKRGFSETESESETNTVDLKLNLSTKEGATDPQFKPKEKALLLSDSGVKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGSEESEKKNSTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNSFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLG*