AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123940 MtrunA17_Chr1g0184791 88.843 242 8 2 3 225 4 245 7.16e-154 426
Msa0123940 MtrunA17_Chr7g0260641 65.234 256 52 8 1 225 1 250 5.57e-94 275
Msa0123940 MtrunA17_Chr1g0187921 60.166 241 53 8 14 225 10 236 2.55e-81 243
Msa0123940 MtrunA17_Chr1g0190711 57.787 244 64 7 14 225 17 253 3.28e-77 233
Msa0123940 MtrunA17_Chr5g0411501 57.988 169 48 5 77 225 170 335 1.01e-55 180
Msa0123940 MtrunA17_Chr6g0486121 49.048 210 75 5 35 225 58 254 2.98e-55 177
Msa0123940 MtrunA17_Chr5g0428141 58.385 161 45 4 83 225 191 347 5.98e-55 179
Msa0123940 MtrunA17_Chr8g0366881 58.084 167 46 5 79 225 186 348 9.73e-55 178
Msa0123940 MtrunA17_Chr2g0331411 57.055 163 47 5 83 225 167 326 5.18e-53 173
Msa0123940 MtrunA17_Chr8g0390281 55.689 167 47 6 81 225 132 293 8.99e-52 169
Msa0123940 MtrunA17_Chr1g0184801 42.478 226 94 7 1 214 1 202 1.59e-45 150
Msa0123940 MtrunA17_Chr1g0166011 41.176 221 74 7 12 214 1 183 1.08e-43 145
Msa0123940 MtrunA17_Chr7g0260621 42.727 220 89 6 9 214 6 202 2.26e-43 145
Msa0123940 MtrunA17_Chr1g0187961 41.014 217 70 6 9 213 8 178 6.88e-43 142
Msa0123940 MtrunA17_Chr4g0004181 49.275 138 47 4 86 217 52 172 3.87e-32 115
Msa0123940 MtrunA17_Chr2g0332141 52.632 95 28 4 126 205 8 100 1.21e-25 97.1
Msa0123940 MtrunA17_Chr2g0330951 31.559 263 125 8 6 216 4 263 5.44e-24 96.3
Msa0123940 MtrunA17_Chr1g0183251 33.202 253 100 8 21 220 27 263 4.13e-23 94.0
Msa0123940 MtrunA17_Chr8g0340731 36.943 157 67 4 85 209 104 260 2.09e-22 92.4
Msa0123940 MtrunA17_Chr4g0069561 34.722 144 64 6 80 210 58 184 3.47e-15 70.9
Msa0123940 MtrunA17_Chr4g0064131 32.000 125 70 3 89 208 93 207 5.23e-15 71.2
Msa0123940 MtrunA17_Chr3g0137601 28.030 132 77 4 88 210 88 210 1.07e-13 67.8
Msa0123940 MtrunA17_Chr1g0193861 42.222 90 47 2 122 206 81 170 2.00e-12 63.5
Msa0123940 MtrunA17_Chr7g0270851 32.500 120 65 4 94 206 45 155 1.84e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123940 AT4G14550.1 58.848 243 56 9 12 225 1 228 1.91e-79 238
Msa0123940 AT3G23050.1 59.504 242 50 10 21 225 13 243 6.91e-79 237
Msa0123940 AT3G04730.1 56.911 246 59 8 14 225 4 236 1.95e-78 235
Msa0123940 AT1G04250.1 56.723 238 54 9 18 225 11 229 7.40e-76 229
Msa0123940 AT4G14550.2 56.897 232 56 9 12 214 1 217 3.64e-71 217
Msa0123940 AT4G14550.3 54.762 210 51 9 12 192 1 195 2.55e-57 180
Msa0123940 AT3G23050.2 55.502 209 46 9 21 193 13 210 1.13e-56 179
Msa0123940 AT4G29080.1 53.191 188 57 6 63 224 122 304 1.45e-54 177
Msa0123940 AT5G65670.2 49.321 221 78 7 35 225 120 336 7.96e-54 176
Msa0123940 AT5G65670.1 48.879 223 78 8 35 225 120 338 7.01e-52 171
Msa0123940 AT2G22670.3 51.852 162 55 4 83 224 160 318 1.14e-46 157
Msa0123940 AT2G22670.1 51.852 162 55 4 83 224 160 318 1.14e-46 157
Msa0123940 AT2G22670.4 51.852 162 55 4 83 224 177 335 1.39e-46 157
Msa0123940 AT1G04240.1 45.238 210 86 7 9 214 2 186 1.43e-43 145
Msa0123940 AT5G43700.1 57.037 135 44 3 84 214 58 182 1.61e-43 145
Msa0123940 AT2G22670.5 50.617 162 55 6 83 224 160 316 2.05e-43 149
Msa0123940 AT2G22670.2 50.617 162 55 6 83 224 160 316 2.05e-43 149
Msa0123940 AT1G04240.2 45.238 210 86 7 9 214 102 286 1.94e-42 145
Msa0123940 AT3G23030.1 48.993 149 25 3 83 213 55 170 5.63e-39 133
Msa0123940 AT3G23030.2 48.993 149 25 3 83 213 142 257 2.35e-38 134
Msa0123940 AT3G15540.1 40.351 228 89 9 8 220 2 197 2.74e-38 132
Msa0123940 AT2G33310.3 40.642 187 77 4 65 219 52 236 4.64e-34 122
Msa0123940 AT2G33310.1 40.642 187 77 4 65 219 52 236 4.64e-34 122
Msa0123940 AT4G14550.4 55.172 145 40 7 12 145 1 131 1.81e-33 119
Msa0123940 AT1G15580.1 41.026 195 66 6 14 206 10 157 1.98e-33 118
Msa0123940 AT1G04550.2 42.703 185 77 6 65 220 46 230 3.97e-33 120
Msa0123940 AT4G14560.1 50.725 138 47 2 77 210 44 164 8.82e-33 117
Msa0123940 AT2G33310.2 40.426 188 77 5 65 219 52 237 1.08e-32 119
Msa0123940 AT3G23050.3 54.861 144 37 7 21 146 13 146 7.77e-32 114
Msa0123940 AT1G52830.1 35.586 222 88 8 9 214 3 185 4.09e-29 108
Msa0123940 AT4G28640.1 40.625 160 59 5 87 214 87 242 5.95e-27 103
Msa0123940 AT4G28640.3 40.506 158 58 5 87 212 87 240 9.26e-27 103
Msa0123940 AT3G16500.1 38.372 172 78 5 66 209 81 252 1.28e-26 103
Msa0123940 AT3G16500.2 38.372 172 78 5 66 209 81 252 1.31e-26 103
Msa0123940 AT4G28640.2 40.506 158 58 5 87 212 87 240 6.80e-26 102
Msa0123940 AT5G25890.1 40.769 130 71 2 87 216 47 170 1.78e-23 93.2
Msa0123940 AT1G04100.1 35.119 168 64 4 90 214 95 260 3.93e-23 94.4
Msa0123940 AT1G51950.1 36.875 160 64 6 85 209 93 250 1.12e-21 90.5
Msa0123940 AT3G17600.1 31.293 147 78 4 69 206 22 154 8.33e-18 77.8
Msa0123940 AT2G46990.1 43.529 85 44 1 126 206 86 170 1.90e-16 74.7
Msa0123940 AT3G62100.1 38.776 98 54 2 118 209 74 171 5.70e-16 73.2
Msa0123940 AT2G46990.2 44.444 72 36 1 126 193 86 157 1.11e-11 61.2
Msa0123940 AT4G32280.1 25.000 172 77 5 87 221 93 249 3.16e-11 61.6

Find 98 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCCTCCACTGCTCTTT+TGG 0.091227 1_3:+51300459 None:intergenic
CTAACTTTCACAAAGCTTAT+TGG 0.130204 1_3:+51300407 None:intergenic
TTTAGAGTCATTATCGTTTC+TGG 0.134360 1_3:+51298337 None:intergenic
TATTTAATTTGCATAGAAAT+TGG 0.213907 1_3:-51298084 Msa0123940:three_prime_UTR
GCTCTTCTGCTCTCTGATTC+TGG 0.233246 1_3:-51301420 Msa0123940:CDS
GGTAACTCTTGTACATCTTT+AGG 0.262824 1_3:+51300351 None:intergenic
AATCCACCTCCACCATGTTT+AGG 0.296733 1_3:+51298017 None:intergenic
AAGCTTTGTGAAAGTTAGTA+TGG 0.303935 1_3:-51300402 Msa0123940:CDS
GCTTCAGTTGCCAAGTCAAC+TGG 0.308202 1_3:+51298511 None:intergenic
TTGTGAATCCCAAGGCATTA+AGG 0.313394 1_3:-51299584 Msa0123940:CDS
CATGGTGGAGGTGGATTGAT+TGG 0.322396 1_3:-51298011 Msa0123940:three_prime_UTR
TGTGTATGTGTAACATTATA+TGG 0.333308 1_3:-51298422 Msa0123940:three_prime_UTR
GGAGGTGGATTGATTGGGTG+GGG 0.344659 1_3:-51298005 Msa0123940:three_prime_UTR
GGAAAACAACAGAAGTAATA+AGG 0.347716 1_3:-51301557 Msa0123940:CDS
ATCCACCTCCACCATGTTTA+GGG 0.351865 1_3:+51298018 None:intergenic
GGAAGTTGCAGGGCTGAAAA+AGG 0.353058 1_3:-51301634 Msa0123940:CDS
AGCAGAAGAGCCTTCTCCTT+TGG 0.360991 1_3:+51301432 None:intergenic
CCATCTTTGTCTTCATAAGT+TGG 0.383939 1_3:+51299505 None:intergenic
CATGAAATCCTTAATGCCTT+GGG 0.384985 1_3:+51299576 None:intergenic
GCATCACATGGAACAGGTTA+TGG 0.386712 1_3:+51298534 None:intergenic
AATCATTAATTTAATAGTAC+AGG 0.396023 1_3:+51298148 None:intergenic
GTGGAGGTGGATTGATTGGG+TGG 0.398888 1_3:-51298007 Msa0123940:three_prime_UTR
GAAGCTTAATCTTTCTACTA+AGG 0.400977 1_3:-51301481 Msa0123940:CDS
TTCTGGTCATAATTTATACT+TGG 0.403351 1_3:+51298354 None:intergenic
TCATGAAATCCTTAATGCCT+TGG 0.406074 1_3:+51299575 None:intergenic
CATCTTTGTCTTCATAAGTT+GGG 0.414636 1_3:+51299506 None:intergenic
AGGCTAGGACTTGGATTGCC+AGG 0.417824 1_3:-51301579 Msa0123940:CDS
TTCTCCTTTGGCTTAAATTG+TGG 0.418936 1_3:+51301444 None:intergenic
AGCATTCAGTGTGATTTGAT+TGG 0.424793 1_3:+51301701 None:intergenic
AACTTGATAATGGAAGTTGC+AGG 0.451323 1_3:-51301645 Msa0123940:exon
GAGGTGGATTGATTGGGTGG+GGG 0.454102 1_3:-51298004 Msa0123940:three_prime_UTR
GAATGAGAGTAATAAGTTGA+TGG 0.457906 1_3:-51299554 Msa0123940:CDS
GTCCCTAAACATGGTGGAGG+TGG 0.468896 1_3:-51298020 Msa0123940:three_prime_UTR
GGAGGAAAAGATGGTGTTTG+AGG 0.477721 1_3:-51301613 Msa0123940:CDS
AGGTCTACTTTGCGGAGGTA+AGG 0.480055 1_3:+51300371 None:intergenic
GGGCAGCAAACATGTTCTTA+CGG 0.483487 1_3:+51300480 None:intergenic
CTTAATCTTTCTACTAAGGA+AGG 0.487124 1_3:-51301477 Msa0123940:CDS
GGAAAGGAAGCCATTGGACT+CGG 0.495438 1_3:-51299149 Msa0123940:intron
TAATGAACAACTTACTTAGC+AGG 0.499421 1_3:+51301387 None:intergenic
AACTGGGCATCACATGGAAC+AGG 0.502457 1_3:+51298528 None:intergenic
TTTGTGACAATAATAGAGGA+AGG 0.505887 1_3:+51301724 None:intergenic
AAGAAAATTTAAAGACAACT+TGG 0.509922 1_3:+51298197 None:intergenic
TGGAGGTGGATTGATTGGGT+GGG 0.511444 1_3:-51298006 Msa0123940:three_prime_UTR
ATAGAGGAAGGGGTATAGAA+AGG 0.512057 1_3:+51301736 None:intergenic
AGGCAAGAGCACGTTGAAGT+GGG 0.512186 1_3:+51301756 None:intergenic
TAAGCTGCAGCAGAAACATA+TGG 0.513103 1_3:-51298483 Msa0123940:three_prime_UTR
CATGTGATGCCCAGTTGACT+TGG 0.514659 1_3:-51298521 Msa0123940:three_prime_UTR
ACATCTTTAGGTCTACTTTG+CGG 0.517949 1_3:+51300363 None:intergenic
ATGAAAGGAAAGGAAGCCAT+TGG 0.526527 1_3:-51299155 Msa0123940:CDS
TTGGTTTGTGACAATAATAG+AGG 0.530133 1_3:+51301720 None:intergenic
ATGGTGGAGGTGGATTGATT+GGG 0.531331 1_3:-51298010 Msa0123940:three_prime_UTR
TTTGTGAAAGTTAGTATGGA+TGG 0.531648 1_3:-51300398 Msa0123940:CDS
TGTGACAATAATAGAGGAAG+GGG 0.540700 1_3:+51301726 None:intergenic
ACAATTTAAGCCAAAGGAGA+AGG 0.543283 1_3:-51301442 Msa0123940:CDS
ACTGAACTGAGGCTAGGACT+TGG 0.544230 1_3:-51301588 Msa0123940:CDS
ACGTATAGGGCACAAGTGGT+AGG 0.553577 1_3:-51300524 Msa0123940:intron
CTTCAGTTGCCAAGTCAACT+GGG 0.554821 1_3:+51298512 None:intergenic
CCAACTTATGAAGACAAAGA+TGG 0.567272 1_3:-51299505 Msa0123940:CDS
CGTATAGGGCACAAGTGGTA+GGG 0.568467 1_3:-51300523 Msa0123940:intron
AAGGCAAGAGCACGTTGAAG+TGG 0.578771 1_3:+51301755 None:intergenic
TGCTTGTCGGTGATGTACCA+TGG 0.581796 1_3:-51299474 Msa0123940:CDS
TATATCAGCACCAAGAGCCA+TGG 0.584136 1_3:-51298599 Msa0123940:intron
TTGTGACAATAATAGAGGAA+GGG 0.584516 1_3:+51301725 None:intergenic
ATCATTAATTTAATAGTACA+GGG 0.588422 1_3:+51298149 None:intergenic
GCAAGAGCACGTTGAAGTGG+GGG 0.588919 1_3:+51301758 None:intergenic
ATGAAGACAAAGATGGCGAC+TGG 0.589440 1_3:-51299498 Msa0123940:CDS
TTCATAAGTTGGGACATAGT+CGG 0.596025 1_3:+51299516 None:intergenic
TTTACGTATCATGAAAGGAA+AGG 0.596184 1_3:-51299165 Msa0123940:CDS
AGATCCACAATTTAAGCCAA+AGG 0.598269 1_3:-51301448 Msa0123940:CDS
GGCTAGGACTTGGATTGCCA+GGG 0.598855 1_3:-51301578 Msa0123940:CDS
AAGCGTTTACGTATCATGAA+AGG 0.600017 1_3:-51299170 Msa0123940:CDS
GGCAAGAGCACGTTGAAGTG+GGG 0.601053 1_3:+51301757 None:intergenic
GAATTGAAAACTTACTCCCA+TGG 0.601391 1_3:+51299457 None:intergenic
GATGGCGACTGGATGCTTGT+CGG 0.601801 1_3:-51299487 Msa0123940:CDS
TTACGGAATGACCGCACTGG+TGG 0.603134 1_3:+51300497 None:intergenic
GCTTGTCGGTGATGTACCAT+GGG 0.605812 1_3:-51299473 Msa0123940:CDS
GAGGAAACTGAACTGAGGCT+AGG 0.606535 1_3:-51301594 Msa0123940:CDS
TTCTTACGGAATGACCGCAC+TGG 0.606920 1_3:+51300494 None:intergenic
CTAGTCCCTAAACATGGTGG+AGG 0.607718 1_3:-51298023 Msa0123940:three_prime_UTR
CTGTACGTATAGGGCACAAG+TGG 0.611935 1_3:-51300528 Msa0123940:intron
ACAGAAGTAATAAGGAAGAG+AGG 0.613004 1_3:-51301549 Msa0123940:CDS
CAAGTCAACTGGGCATCACA+TGG 0.614819 1_3:+51298522 None:intergenic
GCTGCCCAAAAGAGCAGTGG+AGG 0.620267 1_3:-51300464 Msa0123940:CDS
TCTTATGCAAGCACACAACA+AGG 0.621086 1_3:+51298279 None:intergenic
TGAACAACTTACTTAGCAGG+AGG 0.624213 1_3:+51301390 None:intergenic
ACTTGATAATGGAAGTTGCA+GGG 0.628469 1_3:-51301644 Msa0123940:exon
ATCATACTAACCGAGTCCAA+TGG 0.634399 1_3:+51299139 None:intergenic
GTAGGAAATTGTGAATCCCA+AGG 0.642438 1_3:-51299592 Msa0123940:intron
CAAGAGCACGTTGAAGTGGG+GGG 0.644816 1_3:+51301759 None:intergenic
TCTTTAGGTCTACTTTGCGG+AGG 0.646104 1_3:+51300366 None:intergenic
TTTGCTGCCCAAAAGAGCAG+TGG 0.650500 1_3:-51300467 Msa0123940:CDS
ATGCTATTTGAAAATGCACA+TGG 0.668928 1_3:+51297975 None:intergenic
TGGTAGGGTGGCCACCAGTG+CGG 0.683033 1_3:-51300508 Msa0123940:CDS
ATAGGGCACAAGTGGTAGGG+TGG 0.690264 1_3:-51300520 Msa0123940:intron
ACGTAGCTAGTCCCTAAACA+TGG 0.698273 1_3:-51298029 Msa0123940:three_prime_UTR
TAGCTAGTCCCTAAACATGG+TGG 0.721127 1_3:-51298026 Msa0123940:three_prime_UTR
TGAAAGTGAAACAAACACTG+TGG 0.729821 1_3:-51301508 Msa0123940:CDS
TGTTTGAGGAAACTGAACTG+AGG 0.788719 1_3:-51301599 Msa0123940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAATATTTATTTTT+TGG - chr1_3:51300422-51300441 Msa0123940:CDS 0.0%
!! ATATAAATTATTAATCACAA+AGG + chr1_3:51298560-51298579 None:intergenic 10.0%
!!! TTTTAATTGTGAATTAAATA+TGG - chr1_3:51298885-51298904 Msa0123940:intron 10.0%
!!! TAAAAATAGTTCTATATTAA+AGG - chr1_3:51298945-51298964 Msa0123940:intron 10.0%
!! AAATTAAATTTATTCTTTCA+TGG + chr1_3:51300030-51300049 None:intergenic 10.0%
!!! TAAATTTAATTTCATAGAAA+TGG - chr1_3:51300038-51300057 Msa0123940:intron 10.0%
!!! AAATTTAATTTCATAGAAAT+GGG - chr1_3:51300039-51300058 Msa0123940:intron 10.0%
!! GTAATGAAATAAATAAAATA+GGG + chr1_3:51300348-51300367 None:intergenic 10.0%
!! AGTAATGAAATAAATAAAAT+AGG + chr1_3:51300349-51300368 None:intergenic 10.0%
!!! AAATGATATTTTATTCTAAA+GGG + chr1_3:51301052-51301071 None:intergenic 10.0%
!!! TAAATGATATTTTATTCTAA+AGG + chr1_3:51301053-51301072 None:intergenic 10.0%
!!! TTATGTTCCAATTAATTTTA+TGG + chr1_3:51298494-51298513 None:intergenic 15.0%
!!! AAAATTTGCTATATTGTTAT+GGG + chr1_3:51298677-51298696 None:intergenic 15.0%
!! GATAACAATAGTATATAATA+AGG + chr1_3:51298838-51298857 None:intergenic 15.0%
!! AATTTCATTGCTAAAATAAA+TGG - chr1_3:51299077-51299096 Msa0123940:intron 15.0%
!! TGATGATATTCAATAAATAA+AGG - chr1_3:51299722-51299741 Msa0123940:intron 15.0%
!!! AATAAATAAAGGTATAATAG+CGG - chr1_3:51299733-51299752 Msa0123940:intron 15.0%
!! ATTACATACAATAAAATTTG+TGG + chr1_3:51299944-51299963 None:intergenic 15.0%
!! TTTATATTGAAATTGATTGT+AGG - chr1_3:51300141-51300160 Msa0123940:intron 15.0%
!! AAATAAAGTTTGTATTGAAA+TGG - chr1_3:51300661-51300680 Msa0123940:intron 15.0%
!! ATCAAATAAATGAGTTATAT+AGG + chr1_3:51300898-51300917 None:intergenic 15.0%
!! TTTGATTCAAACAATTTAAT+TGG - chr1_3:51300912-51300931 Msa0123940:intron 15.0%
!! ATCATTAATTTAATAGTACA+GGG + chr1_3:51301605-51301624 None:intergenic 15.0%
!! AATCATTAATTTAATAGTAC+AGG + chr1_3:51301606-51301625 None:intergenic 15.0%
!!! TATTTAATTTGCATAGAAAT+TGG - chr1_3:51301667-51301686 Msa0123940:five_prime_UTR 15.0%
!!! TTCCAATTAATTTTATGGAT+CGG + chr1_3:51298489-51298508 None:intergenic 20.0%
!! AATTATTAATCACAAAGGAA+TGG + chr1_3:51298555-51298574 None:intergenic 20.0%
!!! AAATTTGCTATATTGTTATG+GGG + chr1_3:51298676-51298695 None:intergenic 20.0%
!!! CAAAATTTGCTATATTGTTA+TGG + chr1_3:51298678-51298697 None:intergenic 20.0%
!! TACTTATAGAAAAAAGTAAG+AGG + chr1_3:51298744-51298763 None:intergenic 20.0%
!! GTACAATAAAAACATATAGT+AGG + chr1_3:51299017-51299036 None:intergenic 20.0%
!! AGATAAAAAAAAATTACCTG+TGG + chr1_3:51299468-51299487 None:intergenic 20.0%
!!! ATTTTAGTATATGTTAGATG+AGG - chr1_3:51299495-51299514 Msa0123940:CDS 20.0%
!!! TTTTAGTATATGTTAGATGA+GGG - chr1_3:51299496-51299515 Msa0123940:CDS 20.0%
!!! ATATTCTAAAATGATGTATG+TGG - chr1_3:51299780-51299799 Msa0123940:intron 20.0%
!! GCAATATTAAGACAAAATTA+AGG + chr1_3:51299987-51300006 None:intergenic 20.0%
!!! AATTTTGTCTTAATATTGCA+TGG - chr1_3:51299988-51300007 Msa0123940:intron 20.0%
!! AGATCAATATCAAGTATTAA+TGG - chr1_3:51300104-51300123 Msa0123940:intron 20.0%
!! TTAATAGTATGCTCATATAT+TGG - chr1_3:51300696-51300715 Msa0123940:intron 20.0%
!! CTCTTAGAAAAAGTTATATA+GGG + chr1_3:51300775-51300794 None:intergenic 20.0%
!! TCTCTTAGAAAAAGTTATAT+AGG + chr1_3:51300776-51300795 None:intergenic 20.0%
!! ATTCAAATGTTTAAAAGTTG+TGG + chr1_3:51301002-51301021 None:intergenic 20.0%
!! AAGAAAATTTAAAGACAACT+TGG + chr1_3:51301557-51301576 None:intergenic 20.0%
!!! TTGATCTTTTATTGTTAGTT+AGG - chr1_3:51301693-51301712 Msa0123940:five_prime_UTR 20.0%
! AGAGAGAAAAAACTTGATAA+TGG - chr1_3:51298096-51298115 Msa0123940:three_prime_UTR 25.0%
! TTACGCATGCTTAAATATTT+AGG + chr1_3:51298391-51298410 None:intergenic 25.0%
! TTCCGATCCATAAAATTAAT+TGG - chr1_3:51298484-51298503 Msa0123940:three_prime_UTR 25.0%
!! TAGTTCTATATTAAAGGACA+AGG - chr1_3:51298951-51298970 Msa0123940:intron 25.0%
!! GAAAATTCTCAAGTTTTTGA+AGG + chr1_3:51299143-51299162 None:intergenic 25.0%
! AAAAAAATTACCTGTGGTAA+AGG + chr1_3:51299462-51299481 None:intergenic 25.0%
! CTCAAAATAATAGTCGTTTA+AGG - chr1_3:51299590-51299609 Msa0123940:CDS 25.0%
!! ACTTTTGCTTATAATAGTGA+CGG - chr1_3:51299852-51299871 Msa0123940:intron 25.0%
!!! AGAAGACATAATATTTTGAG+AGG - chr1_3:51299900-51299919 Msa0123940:intron 25.0%
!!! GAAGACATAATATTTTGAGA+GGG - chr1_3:51299901-51299920 Msa0123940:intron 25.0%
! TTCGTTAGCTATATATATTG+TGG + chr1_3:51300514-51300533 None:intergenic 25.0%
! GATTCAAACAATTTAATTGG+CGG - chr1_3:51300915-51300934 Msa0123940:intron 25.0%
! TGACATTCTAAGCAAAATAA+CGG - chr1_3:51301113-51301132 Msa0123940:intron 25.0%
! TGTGTATGTGTAACATTATA+TGG - chr1_3:51301329-51301348 Msa0123940:intron 25.0%
! TTCTGGTCATAATTTATACT+TGG + chr1_3:51301400-51301419 None:intergenic 25.0%
TTGTGACAATAATAGAGGAA+GGG + chr1_3:51298029-51298048 None:intergenic 30.0%
TTTGTGACAATAATAGAGGA+AGG + chr1_3:51298030-51298049 None:intergenic 30.0%
!! TTGGTTTGTGACAATAATAG+AGG + chr1_3:51298034-51298053 None:intergenic 30.0%
GGAAAACAACAGAAGTAATA+AGG - chr1_3:51298194-51298213 Msa0123940:three_prime_UTR 30.0%
GAAGCTTAATCTTTCTACTA+AGG - chr1_3:51298270-51298289 Msa0123940:three_prime_UTR 30.0%
CTTAATCTTTCTACTAAGGA+AGG - chr1_3:51298274-51298293 Msa0123940:three_prime_UTR 30.0%
TAATGAACAACTTACTTAGC+AGG + chr1_3:51298367-51298386 None:intergenic 30.0%
ATAGAAAAAAGTAAGAGGCA+AGG + chr1_3:51298739-51298758 None:intergenic 30.0%
AGTTCATGATTGTATTGCTT+TGG + chr1_3:51299117-51299136 None:intergenic 30.0%
AAAGCAATACAATCATGAAC+TGG - chr1_3:51299116-51299135 Msa0123940:intron 30.0%
ACTAATTGAACTGTACGTAT+AGG - chr1_3:51299213-51299232 Msa0123940:intron 30.0%
CTAATTGAACTGTACGTATA+GGG - chr1_3:51299214-51299233 Msa0123940:intron 30.0%
CTAACTTTCACAAAGCTTAT+TGG + chr1_3:51299347-51299366 None:intergenic 30.0%
! AAGCTTTGTGAAAGTTAGTA+TGG - chr1_3:51299349-51299368 Msa0123940:intron 30.0%
TTTGTGAAAGTTAGTATGGA+TGG - chr1_3:51299353-51299372 Msa0123940:intron 30.0%
! GGTAAAGGAGTTAAACATTT+TGG + chr1_3:51299447-51299466 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+GGG - chr1_3:51299853-51299872 Msa0123940:intron 30.0%
! GAATGAGAGTAATAAGTTGA+TGG - chr1_3:51300197-51300216 Msa0123940:intron 30.0%
CATCTTTGTCTTCATAAGTT+GGG + chr1_3:51300248-51300267 None:intergenic 30.0%
CATTCTTCCACTGAATTAAT+TGG - chr1_3:51300316-51300335 Msa0123940:intron 30.0%
!! TTTATTTTCTTTGTGTCGAC+AGG - chr1_3:51300540-51300559 Msa0123940:intron 30.0%
TTTACGTATCATGAAAGGAA+AGG - chr1_3:51300586-51300605 Msa0123940:intron 30.0%
ATAGTATGCTCATATATTGG+TGG - chr1_3:51300699-51300718 Msa0123940:intron 30.0%
TAGTATGCTCATATATTGGT+GGG - chr1_3:51300700-51300719 Msa0123940:intron 30.0%
!!! TCTTTGTTTTGGTGATTAAG+TGG + chr1_3:51300749-51300768 None:intergenic 30.0%
!! ATATAGGGATCTCTTTGTTT+TGG + chr1_3:51300760-51300779 None:intergenic 30.0%
TCGCTGATAACATAGAATTA+GGG - chr1_3:51300948-51300967 Msa0123940:intron 30.0%
! TTTAGAGTCATTATCGTTTC+TGG + chr1_3:51301417-51301436 None:intergenic 30.0%
TGTGACAATAATAGAGGAAG+GGG + chr1_3:51298028-51298047 None:intergenic 35.0%
AGCATTCAGTGTGATTTGAT+TGG + chr1_3:51298053-51298072 None:intergenic 35.0%
!! AACTTGATAATGGAAGTTGC+AGG - chr1_3:51298106-51298125 Msa0123940:three_prime_UTR 35.0%
!! ACTTGATAATGGAAGTTGCA+GGG - chr1_3:51298107-51298126 Msa0123940:three_prime_UTR 35.0%
!!! ATTACTTCTGTTGTTTTCCC+TGG + chr1_3:51298193-51298212 None:intergenic 35.0%
ACAGAAGTAATAAGGAAGAG+AGG - chr1_3:51298202-51298221 Msa0123940:three_prime_UTR 35.0%
TGAAAGTGAAACAAACACTG+TGG - chr1_3:51298243-51298262 Msa0123940:three_prime_UTR 35.0%
AGATCCACAATTTAAGCCAA+AGG - chr1_3:51298303-51298322 Msa0123940:three_prime_UTR 35.0%
! TTCTCCTTTGGCTTAAATTG+TGG + chr1_3:51298310-51298329 None:intergenic 35.0%
ACAATTTAAGCCAAAGGAGA+AGG - chr1_3:51298309-51298328 Msa0123940:three_prime_UTR 35.0%
GAGTACACATCAAGACTAAT+TGG + chr1_3:51298652-51298671 None:intergenic 35.0%
! GAAGTGCTTGAGTATATACA+TGG + chr1_3:51299193-51299212 None:intergenic 35.0%
ACATCTTTAGGTCTACTTTG+CGG + chr1_3:51299391-51299410 None:intergenic 35.0%
GGTAACTCTTGTACATCTTT+AGG + chr1_3:51299403-51299422 None:intergenic 35.0%
!!! GGAGTTAAACATTTTGGCTA+AGG + chr1_3:51299441-51299460 None:intergenic 35.0%
ATGTTTAACTCCTTTACCAC+AGG - chr1_3:51299449-51299468 Msa0123940:intron 35.0%
AGTGAATGAGCGAAATGATA+AGG + chr1_3:51299538-51299557 None:intergenic 35.0%
CATGAAATCCTTAATGCCTT+GGG + chr1_3:51300178-51300197 None:intergenic 35.0%
TCATGAAATCCTTAATGCCT+TGG + chr1_3:51300179-51300198 None:intergenic 35.0%
! TTCATAAGTTGGGACATAGT+CGG + chr1_3:51300238-51300257 None:intergenic 35.0%
CCATCTTTGTCTTCATAAGT+TGG + chr1_3:51300249-51300268 None:intergenic 35.0%
CCAACTTATGAAGACAAAGA+TGG - chr1_3:51300246-51300265 Msa0123940:intron 35.0%
GAATTGAAAACTTACTCCCA+TGG + chr1_3:51300297-51300316 None:intergenic 35.0%
GTCACTACCAATTAATTCAG+TGG + chr1_3:51300326-51300345 None:intergenic 35.0%
TGAAATTAGTACACGTACTC+AGG + chr1_3:51300395-51300414 None:intergenic 35.0%
AGCTATATATATTGTGGTCG+TGG + chr1_3:51300508-51300527 None:intergenic 35.0%
AAGCGTTTACGTATCATGAA+AGG - chr1_3:51300581-51300600 Msa0123940:intron 35.0%
AGTATGCTCATATATTGGTG+GGG - chr1_3:51300701-51300720 Msa0123940:intron 35.0%
CTCGCTGATAACATAGAATT+AGG - chr1_3:51300947-51300966 Msa0123940:intron 35.0%
CGCTGATAACATAGAATTAG+GGG - chr1_3:51300949-51300968 Msa0123940:intron 35.0%
! ATAGAGGAAGGGGTATAGAA+AGG + chr1_3:51298018-51298037 None:intergenic 40.0%
GCTGAAAAAGGAGGAAAAGA+TGG - chr1_3:51298129-51298148 Msa0123940:three_prime_UTR 40.0%
TGTTTGAGGAAACTGAACTG+AGG - chr1_3:51298152-51298171 Msa0123940:three_prime_UTR 40.0%
TGAACAACTTACTTAGCAGG+AGG + chr1_3:51298364-51298383 None:intergenic 40.0%
ATCACAAAGGAATGGAACAC+AGG + chr1_3:51298547-51298566 None:intergenic 40.0%
CGTGCATGTGAATATACACA+TGG - chr1_3:51300080-51300099 Msa0123940:intron 40.0%
GTAGGAAATTGTGAATCCCA+AGG - chr1_3:51300159-51300178 Msa0123940:intron 40.0%
! TTGTGAATCCCAAGGCATTA+AGG - chr1_3:51300167-51300186 Msa0123940:intron 40.0%
ACGTACTCAGGTGTAATTGT+TGG + chr1_3:51300383-51300402 None:intergenic 40.0%
ATGAAAGGAAAGGAAGCCAT+TGG - chr1_3:51300596-51300615 Msa0123940:intron 40.0%
ATCATACTAACCGAGTCCAA+TGG + chr1_3:51300615-51300634 None:intergenic 40.0%
! TTGCATTTTTCCATGGCTCT+TGG + chr1_3:51301165-51301184 None:intergenic 40.0%
! CCTGTTCTTGCATTTTTCCA+TGG + chr1_3:51301172-51301191 None:intergenic 40.0%
CCATGGAAAAATGCAAGAAC+AGG - chr1_3:51301169-51301188 Msa0123940:intron 40.0%
TAAGCTGCAGCAGAAACATA+TGG - chr1_3:51301268-51301287 Msa0123940:intron 40.0%
TCTTATGCAAGCACACAACA+AGG + chr1_3:51301475-51301494 None:intergenic 40.0%
GGAGGAAAAGATGGTGTTTG+AGG - chr1_3:51298138-51298157 Msa0123940:three_prime_UTR 45.0%
GGGCAGCAAACATGTTCTTA+CGG + chr1_3:51299274-51299293 None:intergenic 45.0%
! TGATCCTCCACTGCTCTTTT+GGG + chr1_3:51299294-51299313 None:intergenic 45.0%
TCTTTAGGTCTACTTTGCGG+AGG + chr1_3:51299388-51299407 None:intergenic 45.0%
ATGAAGACAAAGATGGCGAC+TGG - chr1_3:51300253-51300272 Msa0123940:intron 45.0%
GTGGTTTCTCTGTCTCAGTA+TGG + chr1_3:51300489-51300508 None:intergenic 45.0%
TATATCAGCACCAAGAGCCA+TGG - chr1_3:51301152-51301171 Msa0123940:intron 45.0%
GCATCACATGGAACAGGTTA+TGG + chr1_3:51301220-51301239 None:intergenic 45.0%
CTTCAGTTGCCAAGTCAACT+GGG + chr1_3:51301242-51301261 None:intergenic 45.0%
ACGTAGCTAGTCCCTAAACA+TGG - chr1_3:51301722-51301741 Msa0123940:five_prime_UTR 45.0%
TAGCTAGTCCCTAAACATGG+TGG - chr1_3:51301725-51301744 Msa0123940:five_prime_UTR 45.0%
ATCCACCTCCACCATGTTTA+GGG + chr1_3:51301736-51301755 None:intergenic 45.0%
AATCCACCTCCACCATGTTT+AGG + chr1_3:51301737-51301756 None:intergenic 45.0%
!! ATGGTGGAGGTGGATTGATT+GGG - chr1_3:51301741-51301760 Msa0123940:five_prime_UTR 45.0%
!! AAAAATAAAAAAAAATAGTA+AGG + chr1_3:51298768-51298787 None:intergenic 5.0%
!!! ACTATTTTTTTTTATTTTTT+TGG - chr1_3:51298769-51298788 Msa0123940:intron 5.0%
!!! AAAAAAAAAAGTATATAATA+AGG + chr1_3:51298801-51298820 None:intergenic 5.0%
!!! AACTATTTTTAAAATTTATA+TGG + chr1_3:51298936-51298955 None:intergenic 5.0%
! AGGCAAGAGCACGTTGAAGT+GGG + chr1_3:51297998-51298017 None:intergenic 50.0%
! AAGGCAAGAGCACGTTGAAG+TGG + chr1_3:51297999-51298018 None:intergenic 50.0%
GGAAGTTGCAGGGCTGAAAA+AGG - chr1_3:51298117-51298136 Msa0123940:three_prime_UTR 50.0%
AGTTGCAGGGCTGAAAAAGG+AGG - chr1_3:51298120-51298139 Msa0123940:three_prime_UTR 50.0%
GAGGAAACTGAACTGAGGCT+AGG - chr1_3:51298157-51298176 Msa0123940:three_prime_UTR 50.0%
ACTGAACTGAGGCTAGGACT+TGG - chr1_3:51298163-51298182 Msa0123940:three_prime_UTR 50.0%
AGCAGAAGAGCCTTCTCCTT+TGG + chr1_3:51298322-51298341 None:intergenic 50.0%
GCTCTTCTGCTCTCTGATTC+TGG - chr1_3:51298331-51298350 Msa0123940:three_prime_UTR 50.0%
CTGTACGTATAGGGCACAAG+TGG - chr1_3:51299223-51299242 Msa0123940:intron 50.0%
ACGTATAGGGCACAAGTGGT+AGG - chr1_3:51299227-51299246 Msa0123940:intron 50.0%
CGTATAGGGCACAAGTGGTA+GGG - chr1_3:51299228-51299247 Msa0123940:intron 50.0%
TTCTTACGGAATGACCGCAC+TGG + chr1_3:51299260-51299279 None:intergenic 50.0%
TTTGCTGCCCAAAAGAGCAG+TGG - chr1_3:51299284-51299303 Msa0123940:intron 50.0%
! CTGATCCTCCACTGCTCTTT+TGG + chr1_3:51299295-51299314 None:intergenic 50.0%
AGGTCTACTTTGCGGAGGTA+AGG + chr1_3:51299383-51299402 None:intergenic 50.0%
! CTAAGGCATCAGAGAGCTCT+GGG + chr1_3:51299424-51299443 None:intergenic 50.0%
TGCTTGTCGGTGATGTACCA+TGG - chr1_3:51300277-51300296 Msa0123940:intron 50.0%
GCTTGTCGGTGATGTACCAT+GGG - chr1_3:51300278-51300297 Msa0123940:intron 50.0%
GGAAAGGAAGCCATTGGACT+CGG - chr1_3:51300602-51300621 Msa0123940:intron 50.0%
GGAGACATTATGTGAGACGC+AGG + chr1_3:51300981-51301000 None:intergenic 50.0%
AACTGGGCATCACATGGAAC+AGG + chr1_3:51301226-51301245 None:intergenic 50.0%
CAAGTCAACTGGGCATCACA+TGG + chr1_3:51301232-51301251 None:intergenic 50.0%
CATGTGATGCCCAGTTGACT+TGG - chr1_3:51301230-51301249 Msa0123940:intron 50.0%
GCTTCAGTTGCCAAGTCAAC+TGG + chr1_3:51301243-51301262 None:intergenic 50.0%
CTAGTCCCTAAACATGGTGG+AGG - chr1_3:51301728-51301747 Msa0123940:five_prime_UTR 50.0%
!! CATGGTGGAGGTGGATTGAT+TGG - chr1_3:51301740-51301759 Msa0123940:five_prime_UTR 50.0%
!! TGGAGGTGGATTGATTGGGT+GGG - chr1_3:51301745-51301764 Msa0123940:five_prime_UTR 50.0%
! CAAGAGCACGTTGAAGTGGG+GGG + chr1_3:51297995-51298014 None:intergenic 55.0%
! GCAAGAGCACGTTGAAGTGG+GGG + chr1_3:51297996-51298015 None:intergenic 55.0%
! GGCAAGAGCACGTTGAAGTG+GGG + chr1_3:51297997-51298016 None:intergenic 55.0%
AGGCTAGGACTTGGATTGCC+AGG - chr1_3:51298172-51298191 Msa0123940:three_prime_UTR 55.0%
GGCTAGGACTTGGATTGCCA+GGG - chr1_3:51298173-51298192 Msa0123940:three_prime_UTR 55.0%
ATAGGGCACAAGTGGTAGGG+TGG - chr1_3:51299231-51299250 Msa0123940:intron 55.0%
TTACGGAATGACCGCACTGG+TGG + chr1_3:51299257-51299276 None:intergenic 55.0%
! GCTAAGGCATCAGAGAGCTC+TGG + chr1_3:51299425-51299444 None:intergenic 55.0%
GATGGCGACTGGATGCTTGT+CGG - chr1_3:51300264-51300283 Msa0123940:intron 55.0%
! GTCCCTAAACATGGTGGAGG+TGG - chr1_3:51301731-51301750 Msa0123940:five_prime_UTR 55.0%
!! GTGGAGGTGGATTGATTGGG+TGG - chr1_3:51301744-51301763 Msa0123940:five_prime_UTR 55.0%
!! GGAGGTGGATTGATTGGGTG+GGG - chr1_3:51301746-51301765 Msa0123940:five_prime_UTR 55.0%
!! GAGGTGGATTGATTGGGTGG+GGG - chr1_3:51301747-51301766 Msa0123940:five_prime_UTR 55.0%
GCTGCCCAAAAGAGCAGTGG+AGG - chr1_3:51299287-51299306 Msa0123940:intron 60.0%
TGGTAGGGTGGCCACCAGTG+CGG - chr1_3:51299243-51299262 Msa0123940:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 51297977 51301796 51297977 ID=Msa0123940;Name=Msa0123940
chr1_3 mRNA 51297977 51301796 51297977 ID=Msa0123940-mRNA-1;Parent=Msa0123940;Name=Msa0123940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=138|0.75|0.8|1|0.75|0.8|5|599|225
chr1_3 exon 51297977 51298613 51297977 ID=Msa0123940-mRNA-1:exon:15694;Parent=Msa0123940-mRNA-1
chr1_3 exon 51299150 51299211 51299150 ID=Msa0123940-mRNA-1:exon:15693;Parent=Msa0123940-mRNA-1
chr1_3 exon 51299472 51299610 51299472 ID=Msa0123940-mRNA-1:exon:15692;Parent=Msa0123940-mRNA-1
chr1_3 exon 51300357 51300538 51300357 ID=Msa0123940-mRNA-1:exon:15691;Parent=Msa0123940-mRNA-1
chr1_3 exon 51301402 51301796 51301402 ID=Msa0123940-mRNA-1:exon:15690;Parent=Msa0123940-mRNA-1
chr1_3 five_prime_UTR 51301659 51301796 51301659 ID=Msa0123940-mRNA-1:five_prime_utr;Parent=Msa0123940-mRNA-1
chr1_3 CDS 51301402 51301658 51301402 ID=Msa0123940-mRNA-1:cds;Parent=Msa0123940-mRNA-1
chr1_3 CDS 51300357 51300538 51300357 ID=Msa0123940-mRNA-1:cds;Parent=Msa0123940-mRNA-1
chr1_3 CDS 51299472 51299610 51299472 ID=Msa0123940-mRNA-1:cds;Parent=Msa0123940-mRNA-1
chr1_3 CDS 51299150 51299211 51299150 ID=Msa0123940-mRNA-1:cds;Parent=Msa0123940-mRNA-1
chr1_3 CDS 51298576 51298613 51298576 ID=Msa0123940-mRNA-1:cds;Parent=Msa0123940-mRNA-1
chr1_3 three_prime_UTR 51297977 51298575 51297977 ID=Msa0123940-mRNA-1:three_prime_utr;Parent=Msa0123940-mRNA-1
Gene Sequence

>Msa0123940

ATGGAAGTTGCAGGGCTGAAAAAGGAGGAAAAGATGGTGTTTGAGGAAACTGAACTGAGGCTAGGACTTGGATTGCCAGGGAAAACAACAGAAGTAATAAGGAAGAGAGGTTTTTCTGAAACTGAGAGTGAAAGTGAAACAAACACTGTGGATTTGAAGCTTAATCTTTCTACTAAGGAAGGAGCAACAGATCCACAATTTAAGCCAAAGGAGAAGGCTCTTCTGCTCTCTGATTCTGGTGTCAAGCCTCCTGCTAAGGCACAAGTGGTAGGGTGGCCACCAGTGCGGTCATTCCGTAAGAACATGTTTGCTGCCCAAAAGAGCAGTGGAGGATCAGAAGAAAGTGAAAAGAAGAATAGCACTAATCCAATAAGCTTTGTGAAAGTTAGTATGGATGGAGCACCTTACCTCCGCAAAGTAGACCTAAAGATGTACAAGAGAAATTGTGAATCCCAAGGCATTAAGGATTTCATGAATGAGAGTAATAAGTTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAAGATGGCGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTATTGATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCCATTGGACTCGCACCAAGAGCCATGGAAAAATGCAAGAACAGGAGCTAG

Protein sequence

>Msa0123940

MEVAGLKKEEKMVFEETELRLGLGLPGKTTEVIRKRGFSETESESETNTVDLKLNLSTKEGATDPQFKPKEKALLLSDSGVKPPAKAQVVGWPPVRSFRKNMFAAQKSSGGSEESEKKNSTNPISFVKVSMDGAPYLRKVDLKMYKRNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKGKEAIGLAPRAMEKCKNRS*