AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421300 MtrunA17_Chr3g0121391 89.442 824 33 2 1 805 16 804 0.0 1423
Msa0421300 MtrunA17_Chr4g0018581 27.820 266 110 8 53 288 95 308 9.95e-19 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421300 AT3G32940.1 41.980 293 107 6 8 296 2 235 7.13e-59 211
Msa0421300 AT5G51300.1 27.757 263 104 9 60 288 125 335 6.94e-18 89.0
Msa0421300 AT5G51300.2 27.757 263 104 9 60 288 125 335 6.94e-18 89.0
Msa0421300 AT5G51300.3 27.757 263 104 9 60 288 125 335 6.94e-18 89.0

Find 273 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAACCTCCACCTGTTTC+TGG 0.078271 3_2:-70171156 Msa0421300:CDS
AAATTTGTTGGTCTTATTTA+TGG 0.107351 3_2:-70172075 Msa0421300:CDS
AACTGCTGATTTGGAATAAA+TGG 0.142855 3_2:+70171126 None:intergenic
TCATTGTTTGTGATGGAAAA+TGG 0.154644 3_2:+70171208 None:intergenic
GTGAAAATATGATTATATTT+TGG 0.173420 3_2:+70169668 None:intergenic
TCAACTGGAAACCATTTATT+AGG 0.187606 3_2:-70170637 Msa0421300:CDS
ACACCTTCTGTATCTGTTTC+TGG 0.192170 3_2:-70171459 Msa0421300:CDS
ATTCCAACAACTTTGAAATT+TGG 0.216962 3_2:+70173365 None:intergenic
ACCCCTTTATTTGCTTCTTC+TGG 0.217183 3_2:-70171273 Msa0421300:CDS
TCTAAATTTGGTGCCAAATC+TGG 0.242872 3_2:-70173754 Msa0421300:CDS
AAAGAAAGGTTGGTTTAAAA+AGG 0.246602 3_2:+70169780 None:intergenic
TACGTCTCTGCTGCTCCTTT+TGG 0.246885 3_2:-70170283 Msa0421300:CDS
GGCCTCCATGCCTTCAAATT+CGG 0.255606 3_2:-70170512 Msa0421300:CDS
GAGCCAGACTTGCTTTCATC+TGG 0.258694 3_2:+70173289 None:intergenic
CACCAAATTTAGAGAGCTTT+TGG 0.259191 3_2:+70173764 None:intergenic
TCAAGTCTGATTTCAGCTTT+TGG 0.264980 3_2:-70171180 Msa0421300:CDS
GTCCGCGCACGCCGCCATTT+AGG 0.269653 3_2:-70170381 Msa0421300:CDS
ATTAACCCCTCACGGCAATA+TGG 0.272987 3_2:-70170848 Msa0421300:CDS
TAGCAAGGAGTTGTGGATTT+GGG 0.273271 3_2:+70171238 None:intergenic
TGCATAGAAAACTGCTGATT+TGG 0.275514 3_2:+70171117 None:intergenic
AGCCAAAAGCTCTCTAAATT+TGG 0.276842 3_2:-70173766 Msa0421300:CDS
CTAGCAAGGAGTTGTGGATT+TGG 0.279373 3_2:+70171237 None:intergenic
CTTATTACAGAAGGATTTCT+TGG 0.280524 3_2:+70171021 None:intergenic
ATGAAACAGGTCCTAATAAA+TGG 0.288884 3_2:+70170626 None:intergenic
GCCTCCATGCCTTCAAATTC+GGG 0.291164 3_2:-70170511 Msa0421300:CDS
TCCTAATCAATCATCACTAA+TGG 0.291760 3_2:+70169747 None:intergenic
CCAGTTGAATGAACAGTTCC+TGG 0.292551 3_2:+70170652 None:intergenic
TAAACCATGTAATATTCTTT+AGG 0.293815 3_2:-70169639 Msa0421300:three_prime_UTR
ACGAAAACAGCCAAGGAAAA+TGG 0.294817 3_2:+70172457 None:intergenic
ACCTAGACCACCATCGTCTT+TGG 0.295110 3_2:-70170683 Msa0421300:CDS
AATTTGTTGGTCTTATTTAT+GGG 0.300271 3_2:-70172074 Msa0421300:CDS
GCAACAGATGTAGGTGAAAA+TGG 0.302046 3_2:+70169986 None:intergenic
CGTGGAATCAGCAACATATT+TGG 0.304574 3_2:+70170742 None:intergenic
TGTCAGGAAGGCTAAGGTTT+TGG 0.306598 3_2:-70173578 Msa0421300:CDS
TGAATTTACACTCGATGTTT+TGG 0.310389 3_2:-70169595 Msa0421300:three_prime_UTR
TGCAGGATGTGCTGGCTTAC+CGG 0.312647 3_2:+70170024 None:intergenic
GTCGATTGTGCATACCTCTT+TGG 0.316372 3_2:+70170113 None:intergenic
ATTTGTACCCAGGATATTCT+TGG 0.322150 3_2:+70172094 None:intergenic
GAAAATGAGGGAATTGAATA+TGG 0.331793 3_2:-70169937 Msa0421300:exon
ACCAGGTGGAGGCTTGTAAC+TGG 0.338773 3_2:+70172991 None:intergenic
ACTTTCAATACTCTGGTTCA+TGG 0.339329 3_2:-70171317 Msa0421300:CDS
GGGGATAACAAATCCAGATT+TGG 0.341770 3_2:+70173741 None:intergenic
TGAGTAGTAGCTTGACTGTT+TGG 0.351937 3_2:+70170430 None:intergenic
GTGAAAATGGATCATAAATT+TGG 0.358289 3_2:+70169999 None:intergenic
TGCATTTGTGTACTGGCTGC+AGG 0.363665 3_2:+70171348 None:intergenic
GAAAACTAAGTTGCAGTATA+AGG 0.368463 3_2:-70172389 Msa0421300:intron
GGACCAAATTTCAAAGTTGT+TGG 0.374888 3_2:-70173368 Msa0421300:CDS
CTGCCAGAAGAAGCAAATAA+AGG 0.376448 3_2:+70171270 None:intergenic
TTATTTCTAAGCAGAAAGTT+TGG 0.379477 3_2:-70169831 Msa0421300:three_prime_UTR
CCAGGAACTGTTCATTCAAC+TGG 0.379863 3_2:-70170652 Msa0421300:CDS
ATATTGCCGTGAGGGGTTAA+TGG 0.379988 3_2:+70170850 None:intergenic
CCGAGAGAAACGGGTCTTGT+AGG 0.385484 3_2:+70170799 None:intergenic
ATTCCTGATTGCTGAGCTAA+TGG 0.386076 3_2:+70170574 None:intergenic
CCCATTAGTGATGATTGATT+AGG 0.392472 3_2:-70169748 Msa0421300:three_prime_UTR
TGCCAGAAGAAGCAAATAAA+GGG 0.395738 3_2:+70171271 None:intergenic
ATTCAGGGGCATTCAGCTGC+TGG 0.396459 3_2:-70171486 Msa0421300:intron
TGGCCTCAAACAAATCCTTT+TGG 0.396828 3_2:-70171057 Msa0421300:CDS
GTTGGTTGGCTTAAAGAAAC+TGG 0.397405 3_2:+70170955 None:intergenic
TTAAGCCAACCAACACCAAC+TGG 0.398326 3_2:-70170946 Msa0421300:CDS
TTAACCCCTCACGGCAATAT+GGG 0.399508 3_2:-70170847 Msa0421300:CDS
ATCTCCTTGCATTTGTGTAC+TGG 0.400307 3_2:+70171341 None:intergenic
CATTGTTTGTGATGGAAAAT+GGG 0.401368 3_2:+70171209 None:intergenic
AAGCTTTGAAGAGGCTGATC+AGG 0.402278 3_2:+70170349 None:intergenic
AACATTCTTTCAAGAATATG+AGG 0.402387 3_2:+70172412 None:intergenic
TTCTGAGTGTCTCTAATCTC+TGG 0.413004 3_2:+70173334 None:intergenic
TCAGGCACAGCAAACCTAAA+TGG 0.414543 3_2:+70170367 None:intergenic
GGAAGTGGAGCGGATATTCT+TGG 0.414768 3_2:+70170595 None:intergenic
GGTACACAAGAGCCACCTTC+TGG 0.421759 3_2:-70170403 Msa0421300:CDS
ATATGGAAATGCAGGGTGTC+TGG 0.421915 3_2:+70170231 None:intergenic
CCTAATCAATCATCACTAAT+GGG 0.422397 3_2:+70169748 None:intergenic
CTCGAAAAGCGGGAAGCAAT+AGG 0.424171 3_2:-70173131 Msa0421300:intron
GGTGGCTTATATTCAACATC+TGG 0.425251 3_2:+70170769 None:intergenic
TGCATACCTCTTTGGACATC+AGG 0.425484 3_2:+70170121 None:intergenic
ATATACATTTATCAGGAAAC+TGG 0.426195 3_2:-70171912 Msa0421300:intron
AAAGCTGAAATCAGACTTGA+AGG 0.427089 3_2:+70171183 None:intergenic
AGTAGCTTGACTGTTTGGTC+TGG 0.429015 3_2:+70170435 None:intergenic
CCGATCTCTGCTTCCTTCAT+CGG 0.429253 3_2:-70174651 Msa0421300:intron
ATTTGTGGGACTTGAGATCT+TGG 0.429834 3_2:+70170193 None:intergenic
CCTAGACCACCATCGTCTTT+GGG 0.430690 3_2:-70170682 Msa0421300:CDS
ATTTGGTCTGCAGGATGTGC+TGG 0.431219 3_2:+70170016 None:intergenic
CGAGAGAAACGGGTCTTGTA+GGG 0.433708 3_2:+70170800 None:intergenic
GTTAATGGCTGGTTAGCTAT+TGG 0.434006 3_2:+70170865 None:intergenic
AAAGAGAAATTGCATGAGAA+GGG 0.436106 3_2:+70171397 None:intergenic
TGCCCCTCAAATGCAAAACT+TGG 0.437679 3_2:-70170149 Msa0421300:CDS
GTAAAATTTCCCGAATTTGA+AGG 0.438768 3_2:+70170502 None:intergenic
TAATTTCATAGATTAGTAAT+GGG 0.438971 3_2:-70169872 Msa0421300:three_prime_UTR
CTTCCATTAGCTCAGCAATC+AGG 0.444772 3_2:-70170577 Msa0421300:CDS
GAAAGAGAAATTGCATGAGA+AGG 0.446350 3_2:+70171396 None:intergenic
TCGACAAAGCTATCCTGCTC+AGG 0.450978 3_2:-70170095 Msa0421300:CDS
TAAAGGGGTATGAGATGGTA+AGG 0.453984 3_2:+70171287 None:intergenic
AACCCAGATGAAAGCAAGTC+TGG 0.456417 3_2:-70173292 Msa0421300:CDS
TATCCTGGGTACAAATTTGT+TGG 0.457043 3_2:-70172087 Msa0421300:CDS
GGATCATAAATTTGGTCTGC+AGG 0.458027 3_2:+70170007 None:intergenic
TCAACGCCTCAACCTTTGTC+TGG 0.458854 3_2:-70170901 Msa0421300:CDS
AACAATCCCTCCTTGGCGTC+CGG 0.461178 3_2:-70170043 Msa0421300:CDS
TTCTCTTTCTCTTGAAAACC+AGG 0.463182 3_2:-70171382 Msa0421300:CDS
AGCCAGACTTGCTTTCATCT+GGG 0.463396 3_2:+70173290 None:intergenic
CTAATTTCATAGATTAGTAA+TGG 0.464754 3_2:-70169873 Msa0421300:three_prime_UTR
AATGCATCCTGTGTCGGATC+AGG 0.465476 3_2:+70173601 None:intergenic
CCAGGATTACCTTTCGGGTG+TGG 0.466921 3_2:+70169959 None:intergenic
GGAAATTAGTAGTTCAATGA+TGG 0.468823 3_2:+70171663 None:intergenic
GGTTGTGGACCGAGAGAAAC+GGG 0.471798 3_2:+70170790 None:intergenic
GAATCAGCAACATATTTGGC+TGG 0.473232 3_2:+70170746 None:intergenic
CTTGGCGAAGGAAATGAAAC+AGG 0.476112 3_2:+70170613 None:intergenic
AATGAAAGTGAAGCATTTGT+TGG 0.476455 3_2:+70170979 None:intergenic
TGCCGTGAGGGGTTAATGGC+TGG 0.476961 3_2:+70170854 None:intergenic
AAGATCTCAAGTCCCACAAA+TGG 0.477988 3_2:-70170191 Msa0421300:CDS
TATGGGGCTGATGGCTCCAC+CGG 0.478931 3_2:-70170830 Msa0421300:CDS
AATGGGTGGAATCCAGAAAC+AGG 0.480800 3_2:+70171144 None:intergenic
ATTTCCCGAATTTGAAGGCA+TGG 0.481988 3_2:+70170507 None:intergenic
TCTGCACCACACAAGATGTC+TGG 0.482394 3_2:-70173814 Msa0421300:exon
TGACCAGCATATGGAAATGC+AGG 0.484597 3_2:+70170223 None:intergenic
CCCAAAGACGATGGTGGTCT+AGG 0.486702 3_2:+70170682 None:intergenic
TGAGAAGTTATTGGAGGGAG+AGG 0.486959 3_2:-70174749 None:intergenic
GTAGCTTGACTGTTTGGTCT+GGG 0.488055 3_2:+70170436 None:intergenic
GAGAGAGAGAGTACCGATGA+AGG 0.491632 3_2:+70174638 None:intergenic
AGAGGCCATGCTCCCTGAGC+AGG 0.492143 3_2:+70170082 None:intergenic
GGTGGCCCAACTTGACCAAA+AGG 0.492353 3_2:+70171042 None:intergenic
AAACAGTCAAGCTACTACTC+AGG 0.493193 3_2:-70170428 Msa0421300:CDS
CACCCTGCATTTCCATATGC+TGG 0.496063 3_2:-70170226 Msa0421300:CDS
GGTGCAGGTTGACCAGCATA+TGG 0.497213 3_2:+70170214 None:intergenic
CGACACAGGATGCATTTGTC+AGG 0.498014 3_2:-70173594 Msa0421300:CDS
GTTGTCCAGTTGGTGTTGGT+TGG 0.498904 3_2:+70170941 None:intergenic
TGACCAAAAGGATTTGTTTG+AGG 0.501608 3_2:+70171054 None:intergenic
AAGTTCCTCATACCCATTTG+TGG 0.502789 3_2:+70170178 None:intergenic
TTACAGGTCCAAGAATATCC+TGG 0.502819 3_2:-70172102 Msa0421300:intron
GGCGGCGTGCGCGGACCAGA+AGG 0.506734 3_2:+70170388 None:intergenic
TGGAGTTGTCCAGTTGGTGT+TGG 0.507043 3_2:+70170937 None:intergenic
CCCAGTTACAAGCCTCCACC+TGG 0.509104 3_2:-70172992 Msa0421300:CDS
GGGACTTGAGATCTTGGTGC+AGG 0.510647 3_2:+70170199 None:intergenic
ACTTGATAGTAGTCTGCATT+GGG 0.511196 3_2:+70170463 None:intergenic
AAGTCCCACAAATGGGTATG+AGG 0.511470 3_2:-70170183 Msa0421300:CDS
TCACGGCAATATGGGGCTGA+TGG 0.513585 3_2:-70170839 Msa0421300:CDS
CACTTGATAGTAGTCTGCAT+TGG 0.513755 3_2:+70170462 None:intergenic
AGTTCCTCATACCCATTTGT+GGG 0.517946 3_2:+70170179 None:intergenic
GGAGATCACTTTCAATACTC+TGG 0.518595 3_2:-70171324 Msa0421300:CDS
GATTGCTGAGCTAATGGAAG+TGG 0.519966 3_2:+70170580 None:intergenic
CACTCAGAACTCAACGTTGG+TGG 0.520133 3_2:-70173320 Msa0421300:CDS
ACTGCTGATTTGGAATAAAT+GGG 0.521311 3_2:+70171127 None:intergenic
ATATGTTGACATGCATCTCT+TGG 0.521419 3_2:+70171722 None:intergenic
TAATCAGAAGCGACTGGAGA+AGG 0.523062 3_2:-70172040 Msa0421300:intron
GGAATACAGTAAGTCATCAA+AGG 0.524589 3_2:+70169801 None:intergenic
CCACACCCGAAAGGTAATCC+TGG 0.525917 3_2:-70169959 Msa0421300:CDS
GCGTTGAAGAGACTGATGTC+TGG 0.527033 3_2:+70170917 None:intergenic
AAATTGAGAGGAAATCAAGA+TGG 0.527290 3_2:-70173627 Msa0421300:CDS
TCAGCCCCATATTGCCGTGA+GGG 0.531656 3_2:+70170842 None:intergenic
CTGCAGGTTGAAACACAGCC+TGG 0.532102 3_2:+70171364 None:intergenic
GAATACAGTAAGTCATCAAA+GGG 0.532760 3_2:+70169802 None:intergenic
TATGGAAATGCAGGGTGTCT+GGG 0.533513 3_2:+70170232 None:intergenic
AATTGAGAGGAAATCAAGAT+GGG 0.534663 3_2:-70173626 Msa0421300:CDS
GAATGAACAGTTCCTGGCAT+TGG 0.534901 3_2:+70170658 None:intergenic
AGCCTCTTCAAAGCTTTCAA+AGG 0.535341 3_2:-70170342 Msa0421300:CDS
AAAGGTAATCCTGGAAAATG+AGG 0.535442 3_2:-70169950 Msa0421300:exon
GTTTAGCAACAATCCCTCCT+TGG 0.535610 3_2:-70170050 Msa0421300:CDS
TGCATTTGTCAGGAAGGCTA+AGG 0.536700 3_2:-70173584 Msa0421300:CDS
GAACCAATACTTACAGGCAA+AGG 0.537584 3_2:+70172938 None:intergenic
TGCTGGCTTACCGGACGCCA+AGG 0.537749 3_2:+70170033 None:intergenic
TCGTCTTTGGGACCAATGCC+AGG 0.538288 3_2:-70170670 Msa0421300:CDS
GCATCTCTTGGTAACCGCAC+TGG 0.538752 3_2:+70171734 None:intergenic
AGATCTCAAGTCCCACAAAT+GGG 0.542336 3_2:-70170190 Msa0421300:CDS
GCTATCCTGCTCAGGGAGCA+TGG 0.543642 3_2:-70170087 Msa0421300:CDS
AATCAGCAACATATTTGGCT+GGG 0.544073 3_2:+70170747 None:intergenic
CCTACAAGACCCGTTTCTCT+CGG 0.545468 3_2:-70170799 Msa0421300:CDS
AGCAACATATTTGGCTGGGG+TGG 0.546173 3_2:+70170751 None:intergenic
GACACAAGTCTCCAACCAGC+TGG 0.547951 3_2:-70170320 Msa0421300:CDS
AGCAAGGAGTTGTGGATTTG+GGG 0.548336 3_2:+70171239 None:intergenic
TTGCTAAACTTCTGATTCAG+AGG 0.548374 3_2:+70170064 None:intergenic
GGCTTACCGGACGCCAAGGA+GGG 0.550715 3_2:+70170037 None:intergenic
ATTACAGAAGGATTTCTTGG+TGG 0.551389 3_2:+70171024 None:intergenic
GCAAATAAAGGGGTATGAGA+TGG 0.551801 3_2:+70171282 None:intergenic
GTCCTTTGAAAGCTTTGAAG+AGG 0.552634 3_2:+70170340 None:intergenic
AATGCTAGAACTCGAAAAGC+GGG 0.554196 3_2:-70173141 Msa0421300:CDS
AACCTAAATGGCGGCGTGCG+CGG 0.558256 3_2:+70170379 None:intergenic
TTCCAGGGTGAAATTAAACC+AGG 0.558811 3_2:-70171766 Msa0421300:intron
ACACTGACAAATACGAAATG+AGG 0.559712 3_2:-70169901 Msa0421300:three_prime_UTR
CTGACAAATGCATCCTGTGT+CGG 0.560067 3_2:+70173595 None:intergenic
AGGTGATAATCAGAAGCGAC+TGG 0.560138 3_2:-70172046 Msa0421300:CDS
TTTAACAATGGTTTAAAACC+AGG 0.560425 3_2:+70172974 None:intergenic
GGTCTTATTTATGGGACTGA+AGG 0.561574 3_2:-70172066 Msa0421300:CDS
CCAGGTGGAGGCTTGTAACT+GGG 0.561595 3_2:+70172992 None:intergenic
TTATATTCAACATCTGGTTG+TGG 0.562195 3_2:+70170775 None:intergenic
TTATGTGCACTTATTACAGA+AGG 0.562966 3_2:+70171012 None:intergenic
TGGTTGTGGACCGAGAGAAA+CGG 0.564956 3_2:+70170789 None:intergenic
TTTGAAGGCATGGAGGCCAA+TGG 0.565210 3_2:+70170517 None:intergenic
TACAGGTCCAAGAATATCCT+GGG 0.566528 3_2:-70172101 Msa0421300:intron
GCAGAGACGTAAGCTTCAGA+TGG 0.570381 3_2:+70170295 None:intergenic
ACCTCTTTGGACATCAGGAC+TGG 0.571413 3_2:+70170126 None:intergenic
ATATCCTAAAGAATATTACA+TGG 0.574779 3_2:+70169635 None:intergenic
ATACGCCCACGTAAAACCAT+TGG 0.575532 3_2:-70170533 Msa0421300:CDS
GAAGGGCTCATTGTTTGTGA+TGG 0.577438 3_2:+70171201 None:intergenic
GAAAATGGGGTGCTCTAGCA+AGG 0.579347 3_2:+70171223 None:intergenic
ACTACTAATTTCCTCTGTAA+CGG 0.580767 3_2:-70171653 Msa0421300:intron
ATTGGGCCGCTGTCCTTGAA+AGG 0.581635 3_2:+70170480 None:intergenic
GGATTACCTTTCGGGTGTGG+AGG 0.584094 3_2:+70169962 None:intergenic
CCGCACTGGACATCAGTGCC+TGG 0.584220 3_2:+70171748 None:intergenic
CCGATGAAGGAAGCAGAGAT+CGG 0.584547 3_2:+70174651 None:intergenic
AGTATTCATCCACATCATGC+AGG 0.586151 3_2:-70170712 Msa0421300:CDS
GGTGCTCTAGCAAGGAGTTG+TGG 0.586973 3_2:+70171231 None:intergenic
GATATACCAGACAAAGGTTG+AGG 0.588352 3_2:+70170895 None:intergenic
GGCGTGCGCGGACCAGAAGG+TGG 0.590028 3_2:+70170391 None:intergenic
AACAGTCAAGCTACTACTCA+GGG 0.591753 3_2:-70170427 Msa0421300:CDS
TGTAAGATTTGTGTCGGTGG+TGG 0.592288 3_2:+70171090 None:intergenic
TGGCTCTCAAATTAATAGCA+AGG 0.592840 3_2:-70173272 Msa0421300:intron
TTCCATCACGAAAACAGCCA+AGG 0.593130 3_2:+70172450 None:intergenic
CGACAAAGCTATCCTGCTCA+GGG 0.593335 3_2:-70170094 Msa0421300:CDS
TGTGGAGGTGCAACAGATGT+AGG 0.593982 3_2:+70169977 None:intergenic
AGAAATTGCATGAGAAGGGG+TGG 0.595200 3_2:+70171401 None:intergenic
AAAGTTCAAAACAAATTGAG+AGG 0.599794 3_2:-70173639 Msa0421300:CDS
ATCAGCAACATATTTGGCTG+GGG 0.601455 3_2:+70170748 None:intergenic
TTCAGATGGATCCAGCTGGT+TGG 0.603188 3_2:+70170309 None:intergenic
GGCTGGTTAGCTATTGGTGA+CGG 0.603499 3_2:+70170871 None:intergenic
GATGTCTGGAGTTGTCCAGT+TGG 0.603942 3_2:+70170931 None:intergenic
GGAGCGGATATTCTTGGCGA+AGG 0.604340 3_2:+70170601 None:intergenic
GCGTATTGAGAGGCAGAAGT+AGG 0.604696 3_2:+70170550 None:intergenic
AACAATGGTTTAAAACCAGG+TGG 0.604788 3_2:+70172977 None:intergenic
AACCAGCCATTAACCCCTCA+CGG 0.606869 3_2:-70170856 Msa0421300:CDS
AAGAGAAATTGCATGAGAAG+GGG 0.608351 3_2:+70171398 None:intergenic
TAACCCCTCACGGCAATATG+GGG 0.609736 3_2:-70170846 Msa0421300:CDS
AAGCTGAAATCAGACTTGAA+GGG 0.612202 3_2:+70171184 None:intergenic
AATGGTTTAAAACCAGGTGG+AGG 0.613040 3_2:+70172980 None:intergenic
TGGCTTACCGGACGCCAAGG+AGG 0.615968 3_2:+70170036 None:intergenic
TCATAGATTAGTAATGGGCA+CGG 0.617986 3_2:-70169867 Msa0421300:three_prime_UTR
GGATGAATACTACCAGGTCG+TGG 0.617992 3_2:+70170724 None:intergenic
AGAAACAGATACAGAAGGTG+TGG 0.618597 3_2:+70171461 None:intergenic
AAGCTTCAGATGGATCCAGC+TGG 0.622116 3_2:+70170305 None:intergenic
ACAGGATGCATTTGTCAGGA+AGG 0.622340 3_2:-70173590 Msa0421300:CDS
GGTGACATTCCTGCATGATG+TGG 0.623925 3_2:+70170703 None:intergenic
TGGAATCCAGAAACAGGTGG+AGG 0.625781 3_2:+70171150 None:intergenic
TGCTGTAAGATTTGTGTCGG+TGG 0.629521 3_2:+70171087 None:intergenic
GAGTGCTGTAAGATTTGTGT+CGG 0.632626 3_2:+70171084 None:intergenic
AAGGTAATCCTGGAAAATGA+GGG 0.633788 3_2:-70169949 Msa0421300:exon
TTCGTGATGGAAAATGCTGT+CGG 0.635641 3_2:-70172439 Msa0421300:CDS
ATGGGGACCTGATCCGACAC+AGG 0.637383 3_2:-70173608 Msa0421300:CDS
GCAAGGAGTTGTGGATTTGG+GGG 0.641065 3_2:+70171240 None:intergenic
AAATGCTAGAACTCGAAAAG+CGG 0.642409 3_2:-70173142 Msa0421300:CDS
CAGCCCCATATTGCCGTGAG+GGG 0.643697 3_2:+70170843 None:intergenic
GAGAGAAACGGGTCTTGTAG+GGG 0.644488 3_2:+70170801 None:intergenic
GCCAGTCCTGATGTCCAAAG+AGG 0.645143 3_2:-70170127 Msa0421300:CDS
ATGTTGCTGATTCCACGACC+TGG 0.646953 3_2:-70170736 Msa0421300:CDS
GGCATTGGTCCCAAAGACGA+TGG 0.647277 3_2:+70170673 None:intergenic
AGAGAAACGGGTCTTGTAGG+GGG 0.647357 3_2:+70170802 None:intergenic
ATGTCAACTCACCGTTACAG+AGG 0.648823 3_2:+70171642 None:intergenic
CTGAGCTAATGGAAGTGGAG+CGG 0.650968 3_2:+70170585 None:intergenic
GGAAATGCAGGGTGTCTGGG+TGG 0.652818 3_2:+70170235 None:intergenic
TCATTAGTCCCTATTATCCG+AGG 0.654001 3_2:-70173700 Msa0421300:CDS
TGAGCTACGTCAGACCACTA+CGG 0.654542 3_2:-70174710 Msa0421300:five_prime_UTR
AAATCTTACAGCACTCACAA+TGG 0.658430 3_2:-70171077 Msa0421300:CDS
ATTGTTTGTGATGGAAAATG+GGG 0.661649 3_2:+70171210 None:intergenic
GACCAGCATATGGAAATGCA+GGG 0.662409 3_2:+70170224 None:intergenic
AGACCAACAAATTTGTACCC+AGG 0.663255 3_2:+70172084 None:intergenic
GTTGCACCTCCACACCCGAA+AGG 0.663887 3_2:-70169968 Msa0421300:CDS
ATTGGTCCCAAAGACGATGG+TGG 0.664092 3_2:+70170676 None:intergenic
CAATGCAGACTACTATCAAG+TGG 0.664785 3_2:-70170461 Msa0421300:CDS
ATCAGCCCCATATTGCCGTG+AGG 0.664920 3_2:+70170841 None:intergenic
GCAGCCAGTACACAAATGCA+AGG 0.664990 3_2:-70171345 Msa0421300:CDS
GGCACAGCAAACCTAAATGG+CGG 0.665012 3_2:+70170370 None:intergenic
GCCAGAAGAAGCAAATAAAG+GGG 0.669347 3_2:+70171272 None:intergenic
GGGTGGAATCCAGAAACAGG+TGG 0.670920 3_2:+70171147 None:intergenic
GCTGATTTGGAATAAATGGG+TGG 0.671775 3_2:+70171130 None:intergenic
TCTCCAGAAACAGATACAGA+AGG 0.675375 3_2:+70171456 None:intergenic
AAAGGGGTATGAGATGGTAA+GGG 0.676939 3_2:+70171288 None:intergenic
CATGGAACAAAAGCAGACAC+AGG 0.677149 3_2:-70171873 Msa0421300:CDS
TCCCGAATTTGAAGGCATGG+AGG 0.679044 3_2:+70170510 None:intergenic
GTGATGGAAAATGCTGTCGG+AGG 0.689250 3_2:-70172436 Msa0421300:CDS
AGACACTCAGAACTCAACGT+TGG 0.697590 3_2:-70173323 Msa0421300:CDS
ATTGAGAGGAAATCAAGATG+GGG 0.702113 3_2:-70173625 Msa0421300:CDS
GACGGCGATATACCAGACAA+AGG 0.704314 3_2:+70170889 None:intergenic
TGATGTGGATGAATACTACC+AGG 0.708791 3_2:+70170718 None:intergenic
AGTGCGCGTAGCCACCGTAG+TGG 0.717946 3_2:+70174696 None:intergenic
AGTCAAGCTACTACTCAGGG+TGG 0.734032 3_2:-70170424 Msa0421300:CDS
GTAGCTCCAGACATCTTGTG+TGG 0.735809 3_2:+70173808 None:intergenic
CCAGGCACTGATGTCCAGTG+CGG 0.751204 3_2:-70171748 Msa0421300:CDS
GCTACGTCAGACCACTACGG+TGG 0.768773 3_2:-70174707 Msa0421300:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAGTATATATTAG+TGG - chr3_2:70170364-70170383 Msa0421300:CDS 10.0%
!! ATTTAATATATACATTTATC+AGG - chr3_2:70172401-70172420 Msa0421300:CDS 10.0%
!!! TGAAAGTATAAACATTAATT+TGG + chr3_2:70169812-70169831 None:intergenic 15.0%
!! ATAAAATGCTTAATATAGTT+GGG - chr3_2:70169853-70169872 Msa0421300:three_prime_UTR 15.0%
!!! TATTTTTCTTTTCTAAATCA+AGG + chr3_2:70170086-70170105 None:intergenic 15.0%
!! CTAAAATTACATTATAAGTT+GGG - chr3_2:70170829-70170848 Msa0421300:CDS 15.0%
!! AAAAAGGAAATATATACTTA+AGG + chr3_2:70171223-70171242 None:intergenic 15.0%
!! AATCCATATTATCATTATTA+AGG - chr3_2:70171604-70171623 Msa0421300:intron 15.0%
!! ATCCATATTATCATTATTAA+GGG - chr3_2:70171605-70171624 Msa0421300:intron 15.0%
!! AATATCTTAATGTTATCATT+TGG - chr3_2:70172081-70172100 Msa0421300:CDS 15.0%
!! TTAAAAAGTTATACAACAAA+GGG + chr3_2:70172110-70172129 None:intergenic 15.0%
!! AAAGATTAGAATTTAATTCA+GGG + chr3_2:70172369-70172388 None:intergenic 15.0%
!! AAAAGATTAGAATTTAATTC+AGG + chr3_2:70172370-70172389 None:intergenic 15.0%
!!! ACATAACATTTTATGATTTA+TGG - chr3_2:70172714-70172733 Msa0421300:intron 15.0%
!! TAATTTCATAGATTAGTAAT+GGG - chr3_2:70174448-70174467 Msa0421300:intron 15.0%
!!! GTGAAAATATGATTATATTT+TGG + chr3_2:70174655-70174674 None:intergenic 15.0%
!! ATTAATGTTTATACTTTCAG+AGG - chr3_2:70169813-70169832 Msa0421300:three_prime_UTR 20.0%
!! CATAAAATGCTTAATATAGT+TGG - chr3_2:70169852-70169871 Msa0421300:three_prime_UTR 20.0%
!! GAAATATTCTCATATGATAA+AGG - chr3_2:70170180-70170199 Msa0421300:CDS 20.0%
!! TTTGATTATATAACTACCAA+CGG + chr3_2:70170345-70170364 None:intergenic 20.0%
!!! ACAAAATAGTTTGTGTTATT+TGG - chr3_2:70170392-70170411 Msa0421300:CDS 20.0%
!! GCTAAAATTACATTATAAGT+TGG - chr3_2:70170828-70170847 Msa0421300:CDS 20.0%
!! AAACTACTGATGTTTATTTA+TGG - chr3_2:70171141-70171160 Msa0421300:CDS 20.0%
!! AACAACAAATTTAAATAGCA+CGG + chr3_2:70171430-70171449 None:intergenic 20.0%
!! TCATTAGTTATGAAAAGTAA+AGG - chr3_2:70171462-70171481 Msa0421300:CDS 20.0%
!! TCCATATTATCATTATTAAG+GGG - chr3_2:70171606-70171625 Msa0421300:intron 20.0%
!! CAACATAAAGAAATACTATA+AGG + chr3_2:70171652-70171671 None:intergenic 20.0%
!! GAATATCGTAATTGTAATAT+AGG + chr3_2:70172003-70172022 None:intergenic 20.0%
!! CTTAAAAAGTTATACAACAA+AGG + chr3_2:70172111-70172130 None:intergenic 20.0%
!!! AAATTTGTTGGTCTTATTTA+TGG - chr3_2:70172245-70172264 Msa0421300:intron 20.0%
!!! AATTTGTTGGTCTTATTTAT+GGG - chr3_2:70172246-70172265 Msa0421300:intron 20.0%
!! CTAATTTCATAGATTAGTAA+TGG - chr3_2:70174447-70174466 Msa0421300:intron 20.0%
!! TAAACCATGTAATATTCTTT+AGG - chr3_2:70174681-70174700 Msa0421300:five_prime_UTR 20.0%
!! ATATCCTAAAGAATATTACA+TGG + chr3_2:70174688-70174707 None:intergenic 20.0%
! AAAAAGACCTATGTTTAAGT+TGG + chr3_2:70169753-70169772 None:intergenic 25.0%
!! TATAAACATTAATTTGGCGT+TGG + chr3_2:70169806-70169825 None:intergenic 25.0%
!!! CTATTTTCAGCTTATTTTCA+TGG - chr3_2:70170007-70170026 Msa0421300:CDS 25.0%
! TAATAAACTACTGTTACTGA+TGG - chr3_2:70170225-70170244 Msa0421300:CDS 25.0%
! TACAAATGTTTACTCTACAT+AGG - chr3_2:70170297-70170316 Msa0421300:CDS 25.0%
! ACAAATGTTTACTCTACATA+GGG - chr3_2:70170298-70170317 Msa0421300:CDS 25.0%
!!! ATCCTAATAACTTGTTTTTG+GGG + chr3_2:70170601-70170620 None:intergenic 25.0%
!!! GATCCTAATAACTTGTTTTT+GGG + chr3_2:70170602-70170621 None:intergenic 25.0%
!!! TGATCCTAATAACTTGTTTT+TGG + chr3_2:70170603-70170622 None:intergenic 25.0%
! AAAGTTCAAAACAAATTGAG+AGG - chr3_2:70170681-70170700 Msa0421300:CDS 25.0%
!!! ATTCCAACAACTTTGAAATT+TGG + chr3_2:70170958-70170977 None:intergenic 25.0%
!!! TCTAATTTTAGTATTTCACC+TGG + chr3_2:70171307-70171326 None:intergenic 25.0%
!! TTTAACAATGGTTTAAAACC+AGG + chr3_2:70171349-70171368 None:intergenic 25.0%
!! ACATTGTCTTCTTTTAACAA+TGG + chr3_2:70171361-70171380 None:intergenic 25.0%
!!! ATTTTAGAACCAATACTTAC+AGG + chr3_2:70171391-70171410 None:intergenic 25.0%
! AATTTAAATAGCACGGAATT+GGG + chr3_2:70171423-70171442 None:intergenic 25.0%
! AAATTTAAATAGCACGGAAT+TGG + chr3_2:70171424-70171443 None:intergenic 25.0%
! AAAGTAAAGGATACATTTAC+TGG - chr3_2:70171475-70171494 Msa0421300:CDS 25.0%
! ATGATAATATGGATTTGACA+AGG + chr3_2:70171599-70171618 None:intergenic 25.0%
! ACCCCTTAATAATGATAATA+TGG + chr3_2:70171610-70171629 None:intergenic 25.0%
!!! GCCTTATTTTATTTCTTCAT+GGG - chr3_2:70171728-70171747 Msa0421300:CDS 25.0%
! ACCCATGAAGAAATAAAATA+AGG + chr3_2:70171732-70171751 None:intergenic 25.0%
! AACATTCTTTCAAGAATATG+AGG + chr3_2:70171911-70171930 None:intergenic 25.0%
! TACAATTACGATATTCAAGT+AGG - chr3_2:70172007-70172026 Msa0421300:intron 25.0%
! AAGATTAGATACCAACAAAA+TGG + chr3_2:70172311-70172330 None:intergenic 25.0%
! ATATACATTTATCAGGAAAC+TGG - chr3_2:70172408-70172427 Msa0421300:CDS 25.0%
!! TGTTCCATGAATTTTTATCT+TGG + chr3_2:70172436-70172455 None:intergenic 25.0%
! AGAAAGTAAGTTCTTTAATG+TGG - chr3_2:70172472-70172491 Msa0421300:CDS 25.0%
! GTGAAAATGGATCATAAATT+TGG + chr3_2:70174324-70174343 None:intergenic 25.0%
!!! TTATTTCTAAGCAGAAAGTT+TGG - chr3_2:70174489-70174508 Msa0421300:intron 25.0%
!!! AAAGAAAGGTTGGTTTAAAA+AGG + chr3_2:70174543-70174562 None:intergenic 25.0%
!! TATGTTTAAGTTGGAATCAG+AGG + chr3_2:70169744-70169763 None:intergenic 30.0%
TCTGATTCCAACTTAAACAT+AGG - chr3_2:70169743-70169762 Msa0421300:three_prime_UTR 30.0%
ATGTTTATACTTTCAGAGGT+CGG - chr3_2:70169817-70169836 Msa0421300:three_prime_UTR 30.0%
GTTAGTAGATAAGCTTAAAG+AGG + chr3_2:70169938-70169957 None:intergenic 30.0%
!! CTACTAACATAAGTTTTGTG+AGG - chr3_2:70169950-70169969 Msa0421300:exon 30.0%
ATCAAGGAAGCTATAAAATG+AGG + chr3_2:70170070-70170089 None:intergenic 30.0%
! ATCATTTCTAAGGGTATGTT+TGG + chr3_2:70170139-70170158 None:intergenic 30.0%
GCACTTAGTATCATTTCTAA+GGG + chr3_2:70170148-70170167 None:intergenic 30.0%
AGCACTTAGTATCATTTCTA+AGG + chr3_2:70170149-70170168 None:intergenic 30.0%
!! CAAAAAAGTACTGTTACTGT+TGG - chr3_2:70170254-70170273 Msa0421300:CDS 30.0%
TTGTACATGTGATCAAAGAT+TGG + chr3_2:70170439-70170458 None:intergenic 30.0%
GATCACATGTACAAAGTTAT+TGG - chr3_2:70170445-70170464 Msa0421300:CDS 30.0%
ATCCCCAAAAACAAGTTATT+AGG - chr3_2:70170596-70170615 Msa0421300:CDS 30.0%
AAATTGAGAGGAAATCAAGA+TGG - chr3_2:70170693-70170712 Msa0421300:CDS 30.0%
AATTGAGAGGAAATCAAGAT+GGG - chr3_2:70170694-70170713 Msa0421300:CDS 30.0%
ATAACAGAGAATGCTTAGAA+AGG + chr3_2:70170790-70170809 None:intergenic 30.0%
TTAATAATTCGCATGAGTTC+TGG - chr3_2:70170874-70170893 Msa0421300:CDS 30.0%
!! ATTGGTTCTAAAATTCTGCT+AGG - chr3_2:70171397-70171416 Msa0421300:CDS 30.0%
ATTATCATTATTAAGGGGTG+TGG - chr3_2:70171611-70171630 Msa0421300:intron 30.0%
GATTTGCACCAATACATATT+AGG - chr3_2:70171698-70171717 Msa0421300:CDS 30.0%
!!! GGCCTTATTTTATTTCTTCA+TGG - chr3_2:70171727-70171746 Msa0421300:CDS 30.0%
TAACACTCATTAACATGCTA+AGG + chr3_2:70171777-70171796 None:intergenic 30.0%
TTAGTTAACTGCTCAAAAAC+AGG - chr3_2:70171794-70171813 Msa0421300:intron 30.0%
GAAAACTAAGTTGCAGTATA+AGG - chr3_2:70171931-70171950 Msa0421300:intron 30.0%
ATCGTAATTGTAATATAGGC+TGG + chr3_2:70171999-70172018 None:intergenic 30.0%
! AGAAGGTAAAACCATTTTGT+TGG - chr3_2:70172297-70172316 Msa0421300:intron 30.0%
GGTACCAAGATAAAAATTCA+TGG - chr3_2:70172429-70172448 Msa0421300:CDS 30.0%
!!! AGCTGATAGTTTTGATAAAG+TGG - chr3_2:70172622-70172641 Msa0421300:intron 30.0%
GGAAATTAGTAGTTCAATGA+TGG + chr3_2:70172660-70172679 None:intergenic 30.0%
ACTACTAATTTCCTCTGTAA+CGG - chr3_2:70172667-70172686 Msa0421300:intron 30.0%
AAAGAGAAATTGCATGAGAA+GGG + chr3_2:70172926-70172945 None:intergenic 30.0%
! ATTGTTTGTGATGGAAAATG+GGG + chr3_2:70173113-70173132 None:intergenic 30.0%
! CATTGTTTGTGATGGAAAAT+GGG + chr3_2:70173114-70173133 None:intergenic 30.0%
! TCATTGTTTGTGATGGAAAA+TGG + chr3_2:70173115-70173134 None:intergenic 30.0%
!! ACTGCTGATTTGGAATAAAT+GGG + chr3_2:70173196-70173215 None:intergenic 30.0%
!! AACTGCTGATTTGGAATAAA+TGG + chr3_2:70173197-70173216 None:intergenic 30.0%
CTTATTACAGAAGGATTTCT+TGG + chr3_2:70173302-70173321 None:intergenic 30.0%
TTATGTGCACTTATTACAGA+AGG + chr3_2:70173311-70173330 None:intergenic 30.0%
! AATGAAAGTGAAGCATTTGT+TGG + chr3_2:70173344-70173363 None:intergenic 30.0%
TTATATTCAACATCTGGTTG+TGG + chr3_2:70173548-70173567 None:intergenic 30.0%
TCAACTGGAAACCATTTATT+AGG - chr3_2:70173683-70173702 Msa0421300:CDS 30.0%
ATGAAACAGGTCCTAATAAA+TGG + chr3_2:70173697-70173716 None:intergenic 30.0%
GTAAAATTTCCCGAATTTGA+AGG + chr3_2:70173821-70173840 None:intergenic 30.0%
GAAAATGAGGGAATTGAATA+TGG - chr3_2:70174383-70174402 Msa0421300:intron 30.0%
GAATACAGTAAGTCATCAAA+GGG + chr3_2:70174521-70174540 None:intergenic 30.0%
CCTAATCAATCATCACTAAT+GGG + chr3_2:70174575-70174594 None:intergenic 30.0%
TCCTAATCAATCATCACTAA+TGG + chr3_2:70174576-70174595 None:intergenic 30.0%
! TGAATTTACACTCGATGTTT+TGG - chr3_2:70174725-70174744 Msa0421300:five_prime_UTR 30.0%
! TATGTTTGGATGGAGGATTT+TGG + chr3_2:70170125-70170144 None:intergenic 35.0%
! TTTCTAAGGGTATGTTTGGA+TGG + chr3_2:70170135-70170154 None:intergenic 35.0%
TACATGTGATCAAAGATTGG+TGG + chr3_2:70170436-70170455 None:intergenic 35.0%
AGCCAAAAGCTCTCTAAATT+TGG - chr3_2:70170554-70170573 Msa0421300:CDS 35.0%
! CACCAAATTTAGAGAGCTTT+TGG + chr3_2:70170559-70170578 None:intergenic 35.0%
!! TCTAAATTTGGTGCCAAATC+TGG - chr3_2:70170566-70170585 Msa0421300:CDS 35.0%
!!! TTTTAGCTCCTCGGATAATA+GGG + chr3_2:70170631-70170650 None:intergenic 35.0%
!!! TTTTTAGCTCCTCGGATAAT+AGG + chr3_2:70170632-70170651 None:intergenic 35.0%
ATTGAGAGGAAATCAAGATG+GGG - chr3_2:70170695-70170714 Msa0421300:CDS 35.0%
GGACCAAATTTCAAAGTTGT+TGG - chr3_2:70170952-70170971 Msa0421300:CDS 35.0%
TGGCTCTCAAATTAATAGCA+AGG - chr3_2:70171048-70171067 Msa0421300:CDS 35.0%
AAATGCTAGAACTCGAAAAG+CGG - chr3_2:70171178-70171197 Msa0421300:CDS 35.0%
ATTAAAGGGGAGGAACAAAA+AGG + chr3_2:70171239-70171258 None:intergenic 35.0%
GCAGGCTATAAGAATTAAAG+GGG + chr3_2:70171252-70171271 None:intergenic 35.0%
CGCAGGCTATAAGAATTAAA+GGG + chr3_2:70171253-70171272 None:intergenic 35.0%
ACGCAGGCTATAAGAATTAA+AGG + chr3_2:70171254-70171273 None:intergenic 35.0%
CCTGGATATGATTAACATCA+AGG + chr3_2:70171289-70171308 None:intergenic 35.0%
CCTTGATGTTAATCATATCC+AGG - chr3_2:70171286-70171305 Msa0421300:CDS 35.0%
! AACAATGGTTTAAAACCAGG+TGG + chr3_2:70171346-70171365 None:intergenic 35.0%
TGCAATATCTTCCCAGTTAT+TGG - chr3_2:70171541-70171560 Msa0421300:intron 35.0%
GTGAATAGCAGCAATATACT+CGG - chr3_2:70171563-70171582 Msa0421300:intron 35.0%
TTTATGTTGTGAGCTGATGA+GGG - chr3_2:70171663-70171682 Msa0421300:CDS 35.0%
TTGCACCAATACATATTAGG+CGG - chr3_2:70171701-70171720 Msa0421300:CDS 35.0%
TCATGGGTTCAAATTGAACA+TGG - chr3_2:70171744-70171763 Msa0421300:CDS 35.0%
! TTCTGGAAAAGGAAAAGTTC+TGG + chr3_2:70171830-70171849 None:intergenic 35.0%
! GAGAAGAACATTTCTGGAAA+AGG + chr3_2:70171841-70171860 None:intergenic 35.0%
ATGGATGAGAAGAACATTTC+TGG + chr3_2:70171847-70171866 None:intergenic 35.0%
! TTCTTCTCATCCATTTTCCT+TGG - chr3_2:70171853-70171872 Msa0421300:intron 35.0%
! AGTTTTCGTTGTAGAACTTC+AGG + chr3_2:70172179-70172198 None:intergenic 35.0%
ATATGCAGTACCATCTTTAC+AGG - chr3_2:70172202-70172221 Msa0421300:intron 35.0%
TATTCTTGGACCTGTAAAGA+TGG + chr3_2:70172215-70172234 None:intergenic 35.0%
ATTTGTACCCAGGATATTCT+TGG + chr3_2:70172229-70172248 None:intergenic 35.0%
TATCCTGGGTACAAATTTGT+TGG - chr3_2:70172233-70172252 Msa0421300:intron 35.0%
GGATGTCAATCAAAAGATAG+GGG + chr3_2:70172348-70172367 None:intergenic 35.0%
GGGATGTCAATCAAAAGATA+GGG + chr3_2:70172349-70172368 None:intergenic 35.0%
AGGGATGTCAATCAAAAGAT+AGG + chr3_2:70172350-70172369 None:intergenic 35.0%
CTTTGTATGTTCCATTTCCA+GGG - chr3_2:70172539-70172558 Msa0421300:intron 35.0%
! GTTTAATTTCACCCTGGAAA+TGG + chr3_2:70172553-70172572 None:intergenic 35.0%
ATATGTTGACATGCATCTCT+TGG + chr3_2:70172601-70172620 None:intergenic 35.0%
TCTTCTATGCTCTTCTATTC+AGG - chr3_2:70172818-70172837 Msa0421300:intron 35.0%
CTTCTATGCTCTTCTATTCA+GGG - chr3_2:70172819-70172838 Msa0421300:intron 35.0%
TTCTATGCTCTTCTATTCAG+GGG - chr3_2:70172820-70172839 Msa0421300:intron 35.0%
AAGAGAAATTGCATGAGAAG+GGG + chr3_2:70172925-70172944 None:intergenic 35.0%
GAAAGAGAAATTGCATGAGA+AGG + chr3_2:70172927-70172946 None:intergenic 35.0%
TTCTCTTTCTCTTGAAAACC+AGG - chr3_2:70172938-70172957 Msa0421300:intron 35.0%
! ACTTTCAATACTCTGGTTCA+TGG - chr3_2:70173003-70173022 Msa0421300:CDS 35.0%
TGCCAGAAGAAGCAAATAAA+GGG + chr3_2:70173052-70173071 None:intergenic 35.0%
AAGCTGAAATCAGACTTGAA+GGG + chr3_2:70173139-70173158 None:intergenic 35.0%
AAAGCTGAAATCAGACTTGA+AGG + chr3_2:70173140-70173159 None:intergenic 35.0%
! TCAAGTCTGATTTCAGCTTT+TGG - chr3_2:70173140-70173159 Msa0421300:CDS 35.0%
! TGCATAGAAAACTGCTGATT+TGG + chr3_2:70173206-70173225 None:intergenic 35.0%
AAATCTTACAGCACTCACAA+TGG - chr3_2:70173243-70173262 Msa0421300:intron 35.0%
! TGACCAAAAGGATTTGTTTG+AGG + chr3_2:70173269-70173288 None:intergenic 35.0%
! ACAAATCCTTTTGGTCAAGT+TGG - chr3_2:70173272-70173291 Msa0421300:intron 35.0%
! CAAATCCTTTTGGTCAAGTT+GGG - chr3_2:70173273-70173292 Msa0421300:CDS 35.0%
ATTACAGAAGGATTTCTTGG+TGG + chr3_2:70173299-70173318 None:intergenic 35.0%
AATCAGCAACATATTTGGCT+GGG + chr3_2:70173576-70173595 None:intergenic 35.0%
! TCGGGAAATTTTACCTTTCA+AGG - chr3_2:70173827-70173846 Msa0421300:five_prime_UTR 35.0%
! ATTTTACCTTTCAAGGACAG+CGG - chr3_2:70173834-70173853 Msa0421300:five_prime_UTR 35.0%
! ACTTGATAGTAGTCTGCATT+GGG + chr3_2:70173860-70173879 None:intergenic 35.0%
TTGCTAAACTTCTGATTCAG+AGG + chr3_2:70174259-70174278 None:intergenic 35.0%
! ATTTTCCAGGATTACCTTTC+GGG + chr3_2:70174369-70174388 None:intergenic 35.0%
! CATTTTCCAGGATTACCTTT+CGG + chr3_2:70174370-70174389 None:intergenic 35.0%
AAAGGTAATCCTGGAAAATG+AGG - chr3_2:70174370-70174389 Msa0421300:intron 35.0%
AAGGTAATCCTGGAAAATGA+GGG - chr3_2:70174371-70174390 Msa0421300:intron 35.0%
! ATTCAATTCCCTCATTTTCC+AGG + chr3_2:70174382-70174401 None:intergenic 35.0%
ACACTGACAAATACGAAATG+AGG - chr3_2:70174419-70174438 Msa0421300:intron 35.0%
!! TCATAGATTAGTAATGGGCA+CGG - chr3_2:70174453-70174472 Msa0421300:intron 35.0%
GGAATACAGTAAGTCATCAA+AGG + chr3_2:70174522-70174541 None:intergenic 35.0%
GCATTCAGAAAAAGAAAGGT+TGG + chr3_2:70174553-70174572 None:intergenic 35.0%
ATGGGCATTCAGAAAAAGAA+AGG + chr3_2:70174557-70174576 None:intergenic 35.0%
CCCATTAGTGATGATTGATT+AGG - chr3_2:70174572-70174591 Msa0421300:intron 35.0%
! TTTGGATGGAGGATTTTGGA+GGG + chr3_2:70170121-70170140 None:intergenic 40.0%
CATAGGGAATGCATGTTCTT+TGG - chr3_2:70170314-70170333 Msa0421300:CDS 40.0%
ATGTTCTTTGGTATTGCCGT+TGG - chr3_2:70170326-70170345 Msa0421300:CDS 40.0%
GGGGATAACAAATCCAGATT+TGG + chr3_2:70170582-70170601 None:intergenic 40.0%
TCATTAGTCCCTATTATCCG+AGG - chr3_2:70170620-70170639 Msa0421300:CDS 40.0%
ATCCGAGGAGCTAAAAAAGA+TGG - chr3_2:70170635-70170654 Msa0421300:CDS 40.0%
TCCGAGGAGCTAAAAAAGAT+GGG - chr3_2:70170636-70170655 Msa0421300:CDS 40.0%
GCTAAAAAAGATGGGGTTAC+TGG - chr3_2:70170644-70170663 Msa0421300:CDS 40.0%
AGCATCACTTATTCAGACCT+TGG + chr3_2:70170903-70170922 None:intergenic 40.0%
! ACACCTTTTGTAGATTCGTG+TGG - chr3_2:70170931-70170950 Msa0421300:CDS 40.0%
TTCTGAGTGTCTCTAATCTC+TGG + chr3_2:70170989-70171008 None:intergenic 40.0%
AATGCTAGAACTCGAAAAGC+GGG - chr3_2:70171179-70171198 Msa0421300:CDS 40.0%
GGCTATAAGAATTAAAGGGG+AGG + chr3_2:70171249-70171268 None:intergenic 40.0%
AAGGTCATTATCGAATACGC+AGG + chr3_2:70171270-70171289 None:intergenic 40.0%
! AATGGTTTAAAACCAGGTGG+AGG + chr3_2:70171343-70171362 None:intergenic 40.0%
GTTCCTTTGCCTGTAAGTAT+TGG - chr3_2:70171379-70171398 Msa0421300:CDS 40.0%
GAACCAATACTTACAGGCAA+AGG + chr3_2:70171385-70171404 None:intergenic 40.0%
GCTGCTATTCACCAATAACT+GGG + chr3_2:70171555-70171574 None:intergenic 40.0%
TGCTGCTATTCACCAATAAC+TGG + chr3_2:70171556-70171575 None:intergenic 40.0%
CTTTATGTTGTGAGCTGATG+AGG - chr3_2:70171662-70171681 Msa0421300:CDS 40.0%
TTATGTTGTGAGCTGATGAG+GGG - chr3_2:70171664-70171683 Msa0421300:CDS 40.0%
! AGCTGATGAGGGGAAATTTT+AGG - chr3_2:70171674-70171693 Msa0421300:CDS 40.0%
ACGAAAACAGCCAAGGAAAA+TGG + chr3_2:70171866-70171885 None:intergenic 40.0%
! TTCGTGATGGAAAATGCTGT+CGG - chr3_2:70171881-70171900 Msa0421300:CDS 40.0%
TTACAGGTCCAAGAATATCC+TGG - chr3_2:70172218-70172237 Msa0421300:intron 40.0%
TACAGGTCCAAGAATATCCT+GGG - chr3_2:70172219-70172238 Msa0421300:intron 40.0%
AGACCAACAAATTTGTACCC+AGG + chr3_2:70172239-70172258 None:intergenic 40.0%
!! GGTCTTATTTATGGGACTGA+AGG - chr3_2:70172254-70172273 Msa0421300:intron 40.0%
AGATAGGGGTTGCATATAAG+AGG + chr3_2:70172334-70172353 None:intergenic 40.0%
! GTGGCTTTTATTCTGCATCA+AGG - chr3_2:70172491-70172510 Msa0421300:intron 40.0%
GCTTTGTATGTTCCATTTCC+AGG - chr3_2:70172538-70172557 Msa0421300:intron 40.0%
TTCCAGGGTGAAATTAAACC+AGG - chr3_2:70172554-70172573 Msa0421300:intron 40.0%
AGAAACAGATACAGAAGGTG+TGG + chr3_2:70172862-70172881 None:intergenic 40.0%
ACACCTTCTGTATCTGTTTC+TGG - chr3_2:70172861-70172880 Msa0421300:intron 40.0%
TCTCCAGAAACAGATACAGA+AGG + chr3_2:70172867-70172886 None:intergenic 40.0%
ATCTCCTTGCATTTGTGTAC+TGG + chr3_2:70172982-70173001 None:intergenic 40.0%
GGAGATCACTTTCAATACTC+TGG - chr3_2:70172996-70173015 Msa0421300:CDS 40.0%
! AAAGGGGTATGAGATGGTAA+GGG + chr3_2:70173035-70173054 None:intergenic 40.0%
! TAAAGGGGTATGAGATGGTA+AGG + chr3_2:70173036-70173055 None:intergenic 40.0%
! GCAAATAAAGGGGTATGAGA+TGG + chr3_2:70173041-70173060 None:intergenic 40.0%
! ACCCCTTTATTTGCTTCTTC+TGG - chr3_2:70173047-70173066 Msa0421300:intron 40.0%
GCCAGAAGAAGCAAATAAAG+GGG + chr3_2:70173051-70173070 None:intergenic 40.0%
CTGCCAGAAGAAGCAAATAA+AGG + chr3_2:70173053-70173072 None:intergenic 40.0%
TAGCAAGGAGTTGTGGATTT+GGG + chr3_2:70173085-70173104 None:intergenic 40.0%
!! GCTGATTTGGAATAAATGGG+TGG + chr3_2:70173193-70173212 None:intergenic 40.0%
! GAGTGCTGTAAGATTTGTGT+CGG + chr3_2:70173239-70173258 None:intergenic 40.0%
! TGGCCTCAAACAAATCCTTT+TGG - chr3_2:70173263-70173282 Msa0421300:intron 40.0%
!! GTTGGTTGGCTTAAAGAAAC+TGG + chr3_2:70173368-70173387 None:intergenic 40.0%
GATATACCAGACAAAGGTTG+AGG + chr3_2:70173428-70173447 None:intergenic 40.0%
! GTTAATGGCTGGTTAGCTAT+TGG + chr3_2:70173458-70173477 None:intergenic 40.0%
GGTGGCTTATATTCAACATC+TGG + chr3_2:70173554-70173573 None:intergenic 40.0%
ATCAGCAACATATTTGGCTG+GGG + chr3_2:70173575-70173594 None:intergenic 40.0%
GAATCAGCAACATATTTGGC+TGG + chr3_2:70173577-70173596 None:intergenic 40.0%
CGTGGAATCAGCAACATATT+TGG + chr3_2:70173581-70173600 None:intergenic 40.0%
TGATGTGGATGAATACTACC+AGG + chr3_2:70173605-70173624 None:intergenic 40.0%
AGTATTCATCCACATCATGC+AGG - chr3_2:70173608-70173627 Msa0421300:CDS 40.0%
ATTCCTGATTGCTGAGCTAA+TGG + chr3_2:70173749-70173768 None:intergenic 40.0%
ATTTCCCGAATTTGAAGGCA+TGG + chr3_2:70173816-70173835 None:intergenic 40.0%
! CACTTGATAGTAGTCTGCAT+TGG + chr3_2:70173861-70173880 None:intergenic 40.0%
CAATGCAGACTACTATCAAG+TGG - chr3_2:70173859-70173878 Msa0421300:five_prime_UTR 40.0%
TGAGTAGTAGCTTGACTGTT+TGG + chr3_2:70173893-70173912 None:intergenic 40.0%
AAACAGTCAAGCTACTACTC+AGG - chr3_2:70173892-70173911 Msa0421300:intron 40.0%
AACAGTCAAGCTACTACTCA+GGG - chr3_2:70173893-70173912 Msa0421300:intron 40.0%
AGCCTCTTCAAAGCTTTCAA+AGG - chr3_2:70173978-70173997 Msa0421300:intron 40.0%
!! GTCCTTTGAAAGCTTTGAAG+AGG + chr3_2:70173983-70174002 None:intergenic 40.0%
ATTTGTGGGACTTGAGATCT+TGG + chr3_2:70174130-70174149 None:intergenic 40.0%
AAGATCTCAAGTCCCACAAA+TGG - chr3_2:70174129-70174148 Msa0421300:intron 40.0%
AGATCTCAAGTCCCACAAAT+GGG - chr3_2:70174130-70174149 Msa0421300:intron 40.0%
AGTTCCTCATACCCATTTGT+GGG + chr3_2:70174144-70174163 None:intergenic 40.0%
AAGTTCCTCATACCCATTTG+TGG + chr3_2:70174145-70174164 None:intergenic 40.0%
! TGGCCAAGTTTTGCATTTGA+GGG + chr3_2:70174177-70174196 None:intergenic 40.0%
GGATCATAAATTTGGTCTGC+AGG + chr3_2:70174316-70174335 None:intergenic 40.0%
GCAACAGATGTAGGTGAAAA+TGG + chr3_2:70174337-70174356 None:intergenic 40.0%
!! TTGGATGGAGGATTTTGGAG+GGG + chr3_2:70170120-70170139 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG + chr3_2:70170122-70170141 None:intergenic 45.0%
! CTAAGGGTATGTTTGGATGG+AGG + chr3_2:70170132-70170151 None:intergenic 45.0%
!! GAGAGCTTTTGGCTACTAGA+AGG + chr3_2:70170548-70170567 None:intergenic 45.0%
!!! CCCCATCTTTTTTAGCTCCT+CGG + chr3_2:70170640-70170659 None:intergenic 45.0%
CCGAGGAGCTAAAAAAGATG+GGG - chr3_2:70170637-70170656 Msa0421300:CDS 45.0%
CTGACAAATGCATCCTGTGT+CGG + chr3_2:70170728-70170747 None:intergenic 45.0%
ACAGGATGCATTTGTCAGGA+AGG - chr3_2:70170730-70170749 Msa0421300:CDS 45.0%
TGCATTTGTCAGGAAGGCTA+AGG - chr3_2:70170736-70170755 Msa0421300:CDS 45.0%
! TGTCAGGAAGGCTAAGGTTT+TGG - chr3_2:70170742-70170761 Msa0421300:CDS 45.0%
! TTGGCATTGCAGGTGTTTTC+TGG - chr3_2:70170761-70170780 Msa0421300:CDS 45.0%
GGTCCACACGAATCTACAAA+AGG + chr3_2:70170937-70170956 None:intergenic 45.0%
AGACACTCAGAACTCAACGT+TGG - chr3_2:70170997-70171016 Msa0421300:CDS 45.0%
AACCCAGATGAAAGCAAGTC+TGG - chr3_2:70171028-70171047 Msa0421300:CDS 45.0%
! AGCCAGACTTGCTTTCATCT+GGG + chr3_2:70171033-70171052 None:intergenic 45.0%
! ATTATTAAGGGGTGTGGCCA+AGG - chr3_2:70171617-70171636 Msa0421300:intron 45.0%
CTATAAGGCCCACAAAACCT+TGG + chr3_2:70171637-70171656 None:intergenic 45.0%
CCTCACCGCCTAATATGTAT+TGG + chr3_2:70171709-70171728 None:intergenic 45.0%
CCAATACATATTAGGCGGTG+AGG - chr3_2:70171706-70171725 Msa0421300:CDS 45.0%
!! TTCCTTGGCTGTTTTCGTGA+TGG - chr3_2:70171868-70171887 Msa0421300:CDS 45.0%
TTCCATCACGAAAACAGCCA+AGG + chr3_2:70171873-70171892 None:intergenic 45.0%
AGGTGATAATCAGAAGCGAC+TGG - chr3_2:70172274-70172293 Msa0421300:intron 45.0%
TAATCAGAAGCGACTGGAGA+AGG - chr3_2:70172280-70172299 Msa0421300:intron 45.0%
CATGGAACAAAAGCAGACAC+AGG - chr3_2:70172447-70172466 Msa0421300:CDS 45.0%
! TGCCTGGTTTAATTTCACCC+TGG + chr3_2:70172559-70172578 None:intergenic 45.0%
ATGTCAACTCACCGTTACAG+AGG + chr3_2:70172681-70172700 None:intergenic 45.0%
AGAAATTGCATGAGAAGGGG+TGG + chr3_2:70172922-70172941 None:intergenic 45.0%
AGCAAGGAGTTGTGGATTTG+GGG + chr3_2:70173084-70173103 None:intergenic 45.0%
CTAGCAAGGAGTTGTGGATT+TGG + chr3_2:70173086-70173105 None:intergenic 45.0%
GAAGGGCTCATTGTTTGTGA+TGG + chr3_2:70173122-70173141 None:intergenic 45.0%
AATGGGTGGAATCCAGAAAC+AGG + chr3_2:70173179-70173198 None:intergenic 45.0%
! TGTAAGATTTGTGTCGGTGG+TGG + chr3_2:70173233-70173252 None:intergenic 45.0%
TGCTGTAAGATTTGTGTCGG+TGG + chr3_2:70173236-70173255 None:intergenic 45.0%
TTAAGCCAACCAACACCAAC+TGG - chr3_2:70173374-70173393 Msa0421300:CDS 45.0%
ATATTGCCGTGAGGGGTTAA+TGG + chr3_2:70173473-70173492 None:intergenic 45.0%
ATTAACCCCTCACGGCAATA+TGG - chr3_2:70173472-70173491 Msa0421300:intron 45.0%
TTAACCCCTCACGGCAATAT+GGG - chr3_2:70173473-70173492 Msa0421300:intron 45.0%
GAATGAACAGTTCCTGGCAT+TGG + chr3_2:70173665-70173684 None:intergenic 45.0%
CCAGTTGAATGAACAGTTCC+TGG + chr3_2:70173671-70173690 None:intergenic 45.0%
CCAGGAACTGTTCATTCAAC+TGG - chr3_2:70173668-70173687 Msa0421300:CDS 45.0%
CTTGGCGAAGGAAATGAAAC+AGG + chr3_2:70173710-70173729 None:intergenic 45.0%
GATTGCTGAGCTAATGGAAG+TGG + chr3_2:70173743-70173762 None:intergenic 45.0%
CTTCCATTAGCTCAGCAATC+AGG - chr3_2:70173743-70173762 Msa0421300:CDS 45.0%
! TTTTACGTGGGCGTATTGAG+AGG + chr3_2:70173783-70173802 None:intergenic 45.0%
ATACGCCCACGTAAAACCAT+TGG - chr3_2:70173787-70173806 Msa0421300:CDS 45.0%
GTAGCTTGACTGTTTGGTCT+GGG + chr3_2:70173887-70173906 None:intergenic 45.0%
AGTAGCTTGACTGTTTGGTC+TGG + chr3_2:70173888-70173907 None:intergenic 45.0%
TCAGGCACAGCAAACCTAAA+TGG + chr3_2:70173956-70173975 None:intergenic 45.0%
!! AAGCTTTGAAGAGGCTGATC+AGG + chr3_2:70173974-70173993 None:intergenic 45.0%
! TATGGAAATGCAGGGTGTCT+GGG + chr3_2:70174091-70174110 None:intergenic 45.0%
! ATATGGAAATGCAGGGTGTC+TGG + chr3_2:70174092-70174111 None:intergenic 45.0%
GACCAGCATATGGAAATGCA+GGG + chr3_2:70174099-70174118 None:intergenic 45.0%
TGACCAGCATATGGAAATGC+AGG + chr3_2:70174100-70174119 None:intergenic 45.0%
AAGTCCCACAAATGGGTATG+AGG - chr3_2:70174137-70174156 Msa0421300:intron 45.0%
! AAGTTTTGCATTTGAGGGGC+AGG + chr3_2:70174172-70174191 None:intergenic 45.0%
TGCCCCTCAAATGCAAAACT+TGG - chr3_2:70174171-70174190 Msa0421300:intron 45.0%
! GGCCAAGTTTTGCATTTGAG+GGG + chr3_2:70174176-70174195 None:intergenic 45.0%
! CTGGCCAAGTTTTGCATTTG+AGG + chr3_2:70174178-70174197 None:intergenic 45.0%
TGCATACCTCTTTGGACATC+AGG + chr3_2:70174202-70174221 None:intergenic 45.0%
GTCGATTGTGCATACCTCTT+TGG + chr3_2:70174210-70174229 None:intergenic 45.0%
GTTTAGCAACAATCCCTCCT+TGG - chr3_2:70174270-70174289 Msa0421300:intron 45.0%
TGAGCTACGTCAGACCACTA+CGG - chr3_2:70169610-70169629 Msa0421300:three_prime_UTR 50.0%
CCGATGAAGGAAGCAGAGAT+CGG + chr3_2:70169672-70169691 None:intergenic 50.0%
CCGATCTCTGCTTCCTTCAT+CGG - chr3_2:70169669-70169688 Msa0421300:three_prime_UTR 50.0%
!! GAGAGAGAGAGTACCGATGA+AGG + chr3_2:70169685-70169704 None:intergenic 50.0%
!! ATGGAGGATTTTGGAGGGGA+GGG + chr3_2:70170116-70170135 None:intergenic 50.0%
TCTGCACCACACAAGATGTC+TGG - chr3_2:70170506-70170525 Msa0421300:CDS 50.0%
GTAGCTCCAGACATCTTGTG+TGG + chr3_2:70170515-70170534 None:intergenic 50.0%
AATGCATCCTGTGTCGGATC+AGG + chr3_2:70170722-70170741 None:intergenic 50.0%
CGACACAGGATGCATTTGTC+AGG - chr3_2:70170726-70170745 Msa0421300:CDS 50.0%
!! GGCTAAGGTTTTGGCATTGC+AGG - chr3_2:70170751-70170770 Msa0421300:CDS 50.0%
!! CGCATGAGTTCTGGTTTCCA+AGG - chr3_2:70170883-70170902 Msa0421300:CDS 50.0%
CACTCAGAACTCAACGTTGG+TGG - chr3_2:70171000-70171019 Msa0421300:CDS 50.0%
! GAGCCAGACTTGCTTTCATC+TGG + chr3_2:70171034-70171053 None:intergenic 50.0%
CTCGAAAAGCGGGAAGCAAT+AGG - chr3_2:70171189-70171208 Msa0421300:CDS 50.0%
! GTGATGGAAAATGCTGTCGG+AGG - chr3_2:70171884-70171903 Msa0421300:CDS 50.0%
!! TGCATTTGTGTACTGGCTGC+AGG + chr3_2:70172975-70172994 None:intergenic 50.0%
GCAGCCAGTACACAAATGCA+AGG - chr3_2:70172975-70172994 Msa0421300:CDS 50.0%
GCAAGGAGTTGTGGATTTGG+GGG + chr3_2:70173083-70173102 None:intergenic 50.0%
! GAAAATGGGGTGCTCTAGCA+AGG + chr3_2:70173100-70173119 None:intergenic 50.0%
TGGAATCCAGAAACAGGTGG+AGG + chr3_2:70173173-70173192 None:intergenic 50.0%
!! GTTGTCCAGTTGGTGTTGGT+TGG + chr3_2:70173382-70173401 None:intergenic 50.0%
! TGGAGTTGTCCAGTTGGTGT+TGG + chr3_2:70173386-70173405 None:intergenic 50.0%
! GATGTCTGGAGTTGTCCAGT+TGG + chr3_2:70173392-70173411 None:intergenic 50.0%
GCGTTGAAGAGACTGATGTC+TGG + chr3_2:70173406-70173425 None:intergenic 50.0%
TCAACGCCTCAACCTTTGTC+TGG - chr3_2:70173419-70173438 Msa0421300:intron 50.0%
GACGGCGATATACCAGACAA+AGG + chr3_2:70173434-70173453 None:intergenic 50.0%
! GGCTGGTTAGCTATTGGTGA+CGG + chr3_2:70173452-70173471 None:intergenic 50.0%
AACCAGCCATTAACCCCTCA+CGG - chr3_2:70173464-70173483 Msa0421300:intron 50.0%
TAACCCCTCACGGCAATATG+GGG - chr3_2:70173474-70173493 Msa0421300:intron 50.0%
! AGAGAAACGGGTCTTGTAGG+GGG + chr3_2:70173521-70173540 None:intergenic 50.0%
! GAGAGAAACGGGTCTTGTAG+GGG + chr3_2:70173522-70173541 None:intergenic 50.0%
! CGAGAGAAACGGGTCTTGTA+GGG + chr3_2:70173523-70173542 None:intergenic 50.0%
CCTACAAGACCCGTTTCTCT+CGG - chr3_2:70173521-70173540 Msa0421300:intron 50.0%
TGGTTGTGGACCGAGAGAAA+CGG + chr3_2:70173534-70173553 None:intergenic 50.0%
AGCAACATATTTGGCTGGGG+TGG + chr3_2:70173572-70173591 None:intergenic 50.0%
!! ATGTTGCTGATTCCACGACC+TGG - chr3_2:70173584-70173603 Msa0421300:CDS 50.0%
GGATGAATACTACCAGGTCG+TGG + chr3_2:70173599-70173618 None:intergenic 50.0%
GGTGACATTCCTGCATGATG+TGG + chr3_2:70173620-70173639 None:intergenic 50.0%
ACCTAGACCACCATCGTCTT+TGG - chr3_2:70173637-70173656 Msa0421300:CDS 50.0%
CCTAGACCACCATCGTCTTT+GGG - chr3_2:70173638-70173657 Msa0421300:CDS 50.0%
ATTGGTCCCAAAGACGATGG+TGG + chr3_2:70173647-70173666 None:intergenic 50.0%
GGAAGTGGAGCGGATATTCT+TGG + chr3_2:70173728-70173747 None:intergenic 50.0%
CTGAGCTAATGGAAGTGGAG+CGG + chr3_2:70173738-70173757 None:intergenic 50.0%
GCGTATTGAGAGGCAGAAGT+AGG + chr3_2:70173773-70173792 None:intergenic 50.0%
!! GGAGGCCAATGGTTTTACGT+GGG + chr3_2:70173795-70173814 None:intergenic 50.0%
!! TGGAGGCCAATGGTTTTACG+TGG + chr3_2:70173796-70173815 None:intergenic 50.0%
! TTTGAAGGCATGGAGGCCAA+TGG + chr3_2:70173806-70173825 None:intergenic 50.0%
GGCCTCCATGCCTTCAAATT+CGG - chr3_2:70173808-70173827 Msa0421300:exon 50.0%
GCCTCCATGCCTTCAAATTC+GGG - chr3_2:70173809-70173828 Msa0421300:exon 50.0%
! TCCCGAATTTGAAGGCATGG+AGG + chr3_2:70173813-70173832 None:intergenic 50.0%
AGTCAAGCTACTACTCAGGG+TGG - chr3_2:70173896-70173915 Msa0421300:intron 50.0%
GGCACAGCAAACCTAAATGG+CGG + chr3_2:70173953-70173972 None:intergenic 50.0%
TTCAGATGGATCCAGCTGGT+TGG + chr3_2:70174014-70174033 None:intergenic 50.0%
AAGCTTCAGATGGATCCAGC+TGG + chr3_2:70174018-70174037 None:intergenic 50.0%
GCAGAGACGTAAGCTTCAGA+TGG + chr3_2:70174028-70174047 None:intergenic 50.0%
! TACGTCTCTGCTGCTCCTTT+TGG - chr3_2:70174037-70174056 Msa0421300:intron 50.0%
! ACGTCTCTGCTGCTCCTTTT+GGG - chr3_2:70174038-70174057 Msa0421300:intron 50.0%
GAACCTGAACTTCCCCCAAA+AGG + chr3_2:70174055-70174074 None:intergenic 50.0%
CACCCTGCATTTCCATATGC+TGG - chr3_2:70174094-70174113 Msa0421300:intron 50.0%
ACCTCTTTGGACATCAGGAC+TGG + chr3_2:70174197-70174216 None:intergenic 50.0%
TCGACAAAGCTATCCTGCTC+AGG - chr3_2:70174225-70174244 Msa0421300:intron 50.0%
CGACAAAGCTATCCTGCTCA+GGG - chr3_2:70174226-70174245 Msa0421300:intron 50.0%
ATTTGGTCTGCAGGATGTGC+TGG + chr3_2:70174307-70174326 None:intergenic 50.0%
! TGTGGAGGTGCAACAGATGT+AGG + chr3_2:70174346-70174365 None:intergenic 50.0%
!! TGGAGGATTTTGGAGGGGAG+GGG + chr3_2:70170115-70170134 None:intergenic 55.0%
!! GATGGAGGATTTTGGAGGGG+AGG + chr3_2:70170117-70170136 None:intergenic 55.0%
CCAGGTGGAGGCTTGTAACT+GGG + chr3_2:70171331-70171350 None:intergenic 55.0%
ACCAGGTGGAGGCTTGTAAC+TGG + chr3_2:70171332-70171351 None:intergenic 55.0%
!! GGGTGTGGCCAAGGTTTTGT+GGG - chr3_2:70171626-70171645 Msa0421300:intron 55.0%
! GCATCTCTTGGTAACCGCAC+TGG + chr3_2:70172589-70172608 None:intergenic 55.0%
!! ATTCAGGGGCATTCAGCTGC+TGG - chr3_2:70172834-70172853 Msa0421300:intron 55.0%
! CTGCAGGTTGAAACACAGCC+TGG + chr3_2:70172959-70172978 None:intergenic 55.0%
GGTGCTCTAGCAAGGAGTTG+TGG + chr3_2:70173092-70173111 None:intergenic 55.0%
GCTCAACCTCCACCTGTTTC+TGG - chr3_2:70173164-70173183 Msa0421300:intron 55.0%
GGGTGGAATCCAGAAACAGG+TGG + chr3_2:70173176-70173195 None:intergenic 55.0%
GGTGGCCCAACTTGACCAAA+AGG + chr3_2:70173281-70173300 None:intergenic 55.0%
TCAGCCCCATATTGCCGTGA+GGG + chr3_2:70173481-70173500 None:intergenic 55.0%
ATCAGCCCCATATTGCCGTG+AGG + chr3_2:70173482-70173501 None:intergenic 55.0%
TCACGGCAATATGGGGCTGA+TGG - chr3_2:70173481-70173500 Msa0421300:intron 55.0%
! CCGAGAGAAACGGGTCTTGT+AGG + chr3_2:70173524-70173543 None:intergenic 55.0%
GGTTGTGGACCGAGAGAAAC+GGG + chr3_2:70173533-70173552 None:intergenic 55.0%
! CCCAAAGACGATGGTGGTCT+AGG + chr3_2:70173641-70173660 None:intergenic 55.0%
!! GGCATTGGTCCCAAAGACGA+TGG + chr3_2:70173650-70173669 None:intergenic 55.0%
!! TCGTCTTTGGGACCAATGCC+AGG - chr3_2:70173650-70173669 Msa0421300:CDS 55.0%
GGAGCGGATATTCTTGGCGA+AGG + chr3_2:70173722-70173741 None:intergenic 55.0%
ATTGGGCCGCTGTCCTTGAA+AGG + chr3_2:70173843-70173862 None:intergenic 55.0%
GGTACACAAGAGCCACCTTC+TGG - chr3_2:70173917-70173936 Msa0421300:intron 55.0%
GACACAAGTCTCCAACCAGC+TGG - chr3_2:70174000-70174019 Msa0421300:intron 55.0%
! CGTCTCTGCTGCTCCTTTTG+GGG - chr3_2:70174039-70174058 Msa0421300:intron 55.0%
! GTCTCTGCTGCTCCTTTTGG+GGG - chr3_2:70174040-70174059 Msa0421300:intron 55.0%
!! GCTCCTTTTGGGGGAAGTTC+AGG - chr3_2:70174049-70174068 Msa0421300:intron 55.0%
! GGTGCAGGTTGACCAGCATA+TGG + chr3_2:70174109-70174128 None:intergenic 55.0%
! GGGACTTGAGATCTTGGTGC+AGG + chr3_2:70174124-70174143 None:intergenic 55.0%
GCCAGTCCTGATGTCCAAAG+AGG - chr3_2:70174193-70174212 Msa0421300:intron 55.0%
AACAATCCCTCCTTGGCGTC+CGG - chr3_2:70174277-70174296 Msa0421300:intron 55.0%
!! TGCAGGATGTGCTGGCTTAC+CGG + chr3_2:70174299-70174318 None:intergenic 55.0%
! GGATTACCTTTCGGGTGTGG+AGG + chr3_2:70174361-70174380 None:intergenic 55.0%
! CCAGGATTACCTTTCGGGTG+TGG + chr3_2:70174364-70174383 None:intergenic 55.0%
CCACACCCGAAAGGTAATCC+TGG - chr3_2:70174361-70174380 Msa0421300:intron 55.0%
GCTACGTCAGACCACTACGG+TGG - chr3_2:70169613-70169632 Msa0421300:three_prime_UTR 60.0%
!! GGATTTTGGAGGGGAGGGGA+GGG + chr3_2:70170111-70170130 None:intergenic 60.0%
!! AGGATTTTGGAGGGGAGGGG+AGG + chr3_2:70170112-70170131 None:intergenic 60.0%
ATGGGGACCTGATCCGACAC+AGG - chr3_2:70170712-70170731 Msa0421300:CDS 60.0%
CCCAGTTACAAGCCTCCACC+TGG - chr3_2:70171328-70171347 Msa0421300:CDS 60.0%
! GGGGTGTGGCCAAGGTTTTG+TGG - chr3_2:70171625-70171644 Msa0421300:intron 60.0%
!! CCAGGCACTGATGTCCAGTG+CGG - chr3_2:70172572-70172591 Msa0421300:intron 60.0%
TGCCGTGAGGGGTTAATGGC+TGG + chr3_2:70173469-70173488 None:intergenic 60.0%
CAGCCCCATATTGCCGTGAG+GGG + chr3_2:70173480-70173499 None:intergenic 60.0%
TATGGGGCTGATGGCTCCAC+CGG - chr3_2:70173490-70173509 Msa0421300:intron 60.0%
! GGTCTTGTAGGGGGAACTGC+CGG + chr3_2:70173512-70173531 None:intergenic 60.0%
AACCTAAATGGCGGCGTGCG+CGG + chr3_2:70173944-70173963 None:intergenic 60.0%
! GGAAATGCAGGGTGTCTGGG+TGG + chr3_2:70174088-70174107 None:intergenic 60.0%
GCTATCCTGCTCAGGGAGCA+TGG - chr3_2:70174233-70174252 Msa0421300:intron 60.0%
GTTGCACCTCCACACCCGAA+AGG - chr3_2:70174352-70174371 Msa0421300:intron 60.0%
AGTGCGCGTAGCCACCGTAG+TGG + chr3_2:70169627-70169646 None:intergenic 65.0%
CCGCACTGGACATCAGTGCC+TGG + chr3_2:70172575-70172594 None:intergenic 65.0%
CTTGTAGGGGGAACTGCCGG+TGG + chr3_2:70173509-70173528 None:intergenic 65.0%
AGAGGCCATGCTCCCTGAGC+AGG + chr3_2:70174241-70174260 None:intergenic 65.0%
GGCTTACCGGACGCCAAGGA+GGG + chr3_2:70174286-70174305 None:intergenic 65.0%
TGGCTTACCGGACGCCAAGG+AGG + chr3_2:70174287-70174306 None:intergenic 65.0%
!! TGCTGGCTTACCGGACGCCA+AGG + chr3_2:70174290-70174309 None:intergenic 65.0%
GTCCGCGCACGCCGCCATTT+AGG - chr3_2:70173939-70173958 Msa0421300:intron 70.0%
GGCGTGCGCGGACCAGAAGG+TGG + chr3_2:70173932-70173951 None:intergenic 75.0%
! GGCGGCGTGCGCGGACCAGA+AGG + chr3_2:70173935-70173954 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70169586 70174756 70169586 ID=Msa0421300;Name=Msa0421300
chr3_2 mRNA 70169586 70174756 70169586 ID=Msa0421300-mRNA-1;Parent=Msa0421300;Name=Msa0421300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=165|0.88|0.9|1|0.88|0.8|10|366|805
chr3_2 exon 70169586 70171502 70169586 ID=Msa0421300-mRNA-1:exon:16814;Parent=Msa0421300-mRNA-1
chr3_2 exon 70171654 70171782 70171654 ID=Msa0421300-mRNA-1:exon:16813;Parent=Msa0421300-mRNA-1
chr3_2 exon 70171866 70171919 70171866 ID=Msa0421300-mRNA-1:exon:16812;Parent=Msa0421300-mRNA-1
chr3_2 exon 70172041 70172118 70172041 ID=Msa0421300-mRNA-1:exon:16811;Parent=Msa0421300-mRNA-1
chr3_2 exon 70172390 70172494 70172390 ID=Msa0421300-mRNA-1:exon:16810;Parent=Msa0421300-mRNA-1
chr3_2 exon 70172952 70173034 70172952 ID=Msa0421300-mRNA-1:exon:16809;Parent=Msa0421300-mRNA-1
chr3_2 exon 70173132 70173171 70173132 ID=Msa0421300-mRNA-1:exon:16808;Parent=Msa0421300-mRNA-1
chr3_2 exon 70173273 70173398 70173273 ID=Msa0421300-mRNA-1:exon:16807;Parent=Msa0421300-mRNA-1
chr3_2 exon 70173570 70173881 70173570 ID=Msa0421300-mRNA-1:exon:16806;Parent=Msa0421300-mRNA-1
chr3_2 exon 70174652 70174756 70174652 ID=Msa0421300-mRNA-1:exon:16805;Parent=Msa0421300-mRNA-1
chr3_2 five_prime_UTR 70174652 70174756 70174652 ID=Msa0421300-mRNA-1:five_prime_utr;Parent=Msa0421300-mRNA-1
chr3_2 five_prime_UTR 70173822 70173881 70173822 ID=Msa0421300-mRNA-1:five_prime_utr;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70173570 70173821 70173570 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70173273 70173398 70173273 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70173132 70173171 70173132 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70172952 70173034 70172952 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70172390 70172494 70172390 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70172041 70172118 70172041 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70171866 70171919 70171866 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70171654 70171782 70171654 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 CDS 70169952 70171502 70169952 ID=Msa0421300-mRNA-1:cds;Parent=Msa0421300-mRNA-1
chr3_2 three_prime_UTR 70169586 70169951 70169586 ID=Msa0421300-mRNA-1:three_prime_utr;Parent=Msa0421300-mRNA-1
Gene Sequence

>Msa0421300

ATGTCTGGAGCTACATCTACAACACCTTCTAGTAGCCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTTATCCCCAAAAACAAGTTATTAGGATCATTAGTCCCTATTATCCGAGGAGCTAAAAAAGATGGGGTTACTGGAGTTGTCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAGATGGGGACCTGATCCGACACAGGATGCATTTGTCAGGAAGGCTAAGGTTTTGGCATTGCAGATTCGTGTGGACCAAATTTCAAAGTTGTTGGAATCAGAAAATCCAGAGATTAGAGACACTCAGAACTCAACGTTGGTGGATGAGAACCCAGATGAAAGCAAGTCTGGCTCTCAAATTAATAGCAAGAAGTCAGAAATGCTAGAACTCGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAATGTTCCTTTGCCTAAATGTTCTTCTCATCCATTTTCCTTGGCTGTTTTCGTGATGGAAAATGCTGTCGGAGGTCCTCATATTCTTGAAAGAATGTTGAAAACTAAGTTGCAGTATAAGGTCCAAGAATATCCTGGGTACAAATTTGTTGGTCTTATTTATGGGACTGAAGGTGATAATCAGAAGCGACTGGAGAAGGAAACTGGTACCAAGATAAAAATTCATGGAACAAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGCACTGATGTCCAGTGCGGTTACCAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACGGGGCATTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCTGGAGACACAACTAATGTTTTGAATCAAAACGAAGACACCACCCCTTCTCATGCAATTTCTCTTTCTCTTGAAAACCAGGCTGTGTTTCAACCTGCAGCCAGTACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCACCCTTACCATCTCATACCCCTTTATTTGCTTCTTCTGGCAGTGTAGTTCCCCCAAATCCACAACTCCTTGCTAGAGCACCCCATTTTCCATCACAAACAATGAGCCCTTCAAGTCTGATTTCAGCTTTTGGTGCTCAACCTCCACCTGTTTCTGGATTCCACCCATTTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAAATCTTACAGCACTCACAATGGCCTCAAACAAATCCTTTTGGTCAAGTTGGGCCACCAAGAAATCCTTCTGTAATAAGTGCACATAATTTGTCAGCACCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTAAGCCAACCAACACCAACTGGACAACTCCAGACATCAGTCTCTTCAACGCCTCAACCTTTGTCTGGTATATCGCCGTCACCAATAGCTAACCAGCCATTAACCCCTCACGGCAATATGGGGCTGATGGCTCCACCGGCAGTTCCCCCTACAAGACCCGTTTCTCTCGGTCCACAACCAGATGTTGAATATAAGCCACCCCAGCCAAATATGTTGCTGATTCCACGACCTGGTAGTATTCATCCACATCATGCAGGAATGTCACCTAGACCACCATCGTCTTTGGGACCAATGCCAGGAACTGTTCATTCAACTGGAAACCATTTATTAGGACCTGTTTCATTTCCTTCGCCAAGAATATCCGCTCCACTTCCATTAGCTCAGCAATCAGGAATACCTACTTCTGCCTCTCAATACGCCCACGTAAAACCATTGGCCTCCATGCCTTCAAATTCGGGAAATTTTACCTTTCAAGGACAGCGGCCCAATGCAGACTACTATCAAGTGGTTCCCAGACCAAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCACCTTCTGGTCCGCGCACGCCGCCATTTAGGTTTGCTGTGCCTGATCAGCCTCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCAGCTGGATCCATCTGAAGCTTACGTCTCTGCTGCTCCTTTTGGGGGAAGTTCAGGTTCTGTCTCATTTCCACCCAGACACCCTGCATTTCCATATGCTGGTCAACCTGCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTGCCCCTCAAATGCAAAACTTGGCCAGTCCTGATGTCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAGCATGGCCTCTGAATCAGAAGTTTAGCAACAATCCCTCCTTGGCGTCCGGTAAGCCAGCACATCCTGCAGACCAAATTTATGATCCATTTTCACCTACATCTGTTGCACCTCCACACCCGAAAGGTAATCCTGGAAAATGA
Protein sequence

>Msa0421300

MSGATSTTPSSSQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKDGVTGVVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKLLESENPEIRDTQNSTLVDENPDESKSGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPKCSSHPFSLAVFVMENAVGGPHILERMLKTKLQYKVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQEMHVNISADSFDKVDAAISIIELLISSVTGHSAAGSTPSVSVSGDTTNVLNQNEDTTPSHAISLSLENQAVFQPAASTQMQGDHFQYSGSWFSPLPSHTPLFASSGSVVPPNPQLLARAPHFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQVGPPRNPSVISAHNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQPLTPHGNMGLMAPPAVPPTRPVSLGPQPDVEYKPPQPNMLLIPRPGSIHPHHAGMSPRPPSSLGPMPGTVHSTGNHLLGPVSFPSPRISAPLPLAQQSGIPTSASQYAHVKPLASMPSNSGNFTFQGQRPNADYYQVVPRPNSQATTQGGTQEPPSGPRTPPFRFAVPDQPLQSFQRTQVSNQLDPSEAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPAPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHPADQIYDPFSPTSVAPPHPKGNPGK*