AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387880 MtrunA17_Chr3g0121391 89.442 824 33 2 1 805 16 804 0.0 1423
Msa0387880 MtrunA17_Chr4g0018581 27.820 266 110 8 53 288 95 308 9.95e-19 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387880 AT3G32940.1 41.980 293 107 6 8 296 2 235 7.13e-59 211
Msa0387880 AT5G51300.1 27.757 263 104 9 60 288 125 335 6.94e-18 89.0
Msa0387880 AT5G51300.2 27.757 263 104 9 60 288 125 335 6.94e-18 89.0
Msa0387880 AT5G51300.3 27.757 263 104 9 60 288 125 335 6.94e-18 89.0

Find 273 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAACCTCCACCTGTTTC+TGG 0.078271 3_1:+91990859 Msa0387880:CDS
AAATTTGTTGGTCTTATTTA+TGG 0.107351 3_1:+91989940 Msa0387880:CDS
AACTGCTGATTTGGAATAAA+TGG 0.142855 3_1:-91990889 None:intergenic
TCATTGTTTGTGATGGAAAA+TGG 0.154644 3_1:-91990807 None:intergenic
GTGAAAATATGATTATATTT+TGG 0.173420 3_1:-91992347 None:intergenic
TCAACTGGAAACCATTTATT+AGG 0.187606 3_1:+91991378 Msa0387880:CDS
ACACCTTCTGTATCTGTTTC+TGG 0.192170 3_1:+91990556 Msa0387880:CDS
ATTCCAACAACTTTGAAATT+TGG 0.216962 3_1:-91988650 None:intergenic
ACCCCTTTATTTGCTTCTTC+TGG 0.217183 3_1:+91990742 Msa0387880:CDS
TCTAAATTTGGTGCCAAATC+TGG 0.242872 3_1:+91988261 Msa0387880:CDS
AAAGAAAGGTTGGTTTAAAA+AGG 0.246602 3_1:-91992235 None:intergenic
TACGTCTCTGCTGCTCCTTT+TGG 0.246885 3_1:+91991732 Msa0387880:CDS
GGCCTCCATGCCTTCAAATT+CGG 0.255606 3_1:+91991503 Msa0387880:CDS
GAGCCAGACTTGCTTTCATC+TGG 0.258694 3_1:-91988726 None:intergenic
CACCAAATTTAGAGAGCTTT+TGG 0.259191 3_1:-91988251 None:intergenic
TCAAGTCTGATTTCAGCTTT+TGG 0.264980 3_1:+91990835 Msa0387880:CDS
GTCCGCGCACGCCGCCATTT+AGG 0.269653 3_1:+91991634 Msa0387880:CDS
ATTAACCCCTCACGGCAATA+TGG 0.272987 3_1:+91991167 Msa0387880:CDS
TAGCAAGGAGTTGTGGATTT+GGG 0.273271 3_1:-91990777 None:intergenic
TGCATAGAAAACTGCTGATT+TGG 0.275514 3_1:-91990898 None:intergenic
AGCCAAAAGCTCTCTAAATT+TGG 0.276842 3_1:+91988249 Msa0387880:CDS
CTAGCAAGGAGTTGTGGATT+TGG 0.279373 3_1:-91990778 None:intergenic
CTTATTACAGAAGGATTTCT+TGG 0.280524 3_1:-91990994 None:intergenic
ATGAAACAGGTCCTAATAAA+TGG 0.288884 3_1:-91991389 None:intergenic
GCCTCCATGCCTTCAAATTC+GGG 0.291164 3_1:+91991504 Msa0387880:CDS
TCCTAATCAATCATCACTAA+TGG 0.291760 3_1:-91992268 None:intergenic
CCAGTTGAATGAACAGTTCC+TGG 0.292551 3_1:-91991363 None:intergenic
TAAACCATGTAATATTCTTT+AGG 0.293815 3_1:+91992376 Msa0387880:three_prime_UTR
ACGAAAACAGCCAAGGAAAA+TGG 0.294817 3_1:-91989558 None:intergenic
ACCTAGACCACCATCGTCTT+TGG 0.295110 3_1:+91991332 Msa0387880:CDS
AATTTGTTGGTCTTATTTAT+GGG 0.300271 3_1:+91989941 Msa0387880:CDS
GCAACAGATGTAGGTGAAAA+TGG 0.302046 3_1:-91992029 None:intergenic
CGTGGAATCAGCAACATATT+TGG 0.304574 3_1:-91991273 None:intergenic
TGTCAGGAAGGCTAAGGTTT+TGG 0.306598 3_1:+91988437 Msa0387880:CDS
TGAATTTACACTCGATGTTT+TGG 0.310389 3_1:+91992420 Msa0387880:three_prime_UTR
TGCAGGATGTGCTGGCTTAC+CGG 0.312647 3_1:-91991991 None:intergenic
GTCGATTGTGCATACCTCTT+TGG 0.316372 3_1:-91991902 None:intergenic
ATTTGTACCCAGGATATTCT+TGG 0.322150 3_1:-91989921 None:intergenic
GAAAATGAGGGAATTGAATA+TGG 0.331793 3_1:+91992078 Msa0387880:exon
ACCAGGTGGAGGCTTGTAAC+TGG 0.338773 3_1:-91989024 None:intergenic
ACTTTCAATACTCTGGTTCA+TGG 0.339329 3_1:+91990698 Msa0387880:CDS
GGGGATAACAAATCCAGATT+TGG 0.341770 3_1:-91988274 None:intergenic
TGAGTAGTAGCTTGACTGTT+TGG 0.351937 3_1:-91991585 None:intergenic
GTGAAAATGGATCATAAATT+TGG 0.358289 3_1:-91992016 None:intergenic
TGCATTTGTGTACTGGCTGC+AGG 0.363665 3_1:-91990667 None:intergenic
GAAAACTAAGTTGCAGTATA+AGG 0.368463 3_1:+91989626 Msa0387880:CDS
GGACCAAATTTCAAAGTTGT+TGG 0.374888 3_1:+91988647 Msa0387880:CDS
CTGCCAGAAGAAGCAAATAA+AGG 0.376448 3_1:-91990745 None:intergenic
GGTACACAAGAGCCGCCTTC+TGG 0.377029 3_1:+91991612 Msa0387880:CDS
TTATTTCTAAGCAGAAAGTT+TGG 0.379477 3_1:+91992184 Msa0387880:three_prime_UTR
CCAGGAACTGTTCATTCAAC+TGG 0.379863 3_1:+91991363 Msa0387880:CDS
ATATTGCCGTGAGGGGTTAA+TGG 0.379988 3_1:-91991165 None:intergenic
CCGAGAGAAACGGGTCTTGT+AGG 0.385484 3_1:-91991216 None:intergenic
ATTCCTGATTGCTGAGCTAA+TGG 0.386076 3_1:-91991441 None:intergenic
CCCATTAGTGATGATTGATT+AGG 0.392472 3_1:+91992267 Msa0387880:three_prime_UTR
TGCCAGAAGAAGCAAATAAA+GGG 0.395738 3_1:-91990744 None:intergenic
ATTCAGGGGCATTCAGCTGC+TGG 0.396459 3_1:+91990529 Msa0387880:intron
TGGCCTCAAACAAATCCTTT+TGG 0.396828 3_1:+91990958 Msa0387880:CDS
GTTGGTTGGCTTAAAGAAAC+TGG 0.397405 3_1:-91991060 None:intergenic
TTAAGCCAACCAACACCAAC+TGG 0.398326 3_1:+91991069 Msa0387880:CDS
TTAACCCCTCACGGCAATAT+GGG 0.399508 3_1:+91991168 Msa0387880:CDS
ATCTCCTTGCATTTGTGTAC+TGG 0.400307 3_1:-91990674 None:intergenic
CATTGTTTGTGATGGAAAAT+GGG 0.401368 3_1:-91990806 None:intergenic
AAGCTTTGAAGAGGCTGATC+AGG 0.402278 3_1:-91991666 None:intergenic
AACATTCTTTCAAGAATATG+AGG 0.402387 3_1:-91989603 None:intergenic
TTCTGAGTGTCTCTAATCTC+TGG 0.413004 3_1:-91988681 None:intergenic
TCAGGCACAGCAAACCTAAA+TGG 0.414543 3_1:-91991648 None:intergenic
GGAAGTGGAGCGGATATTCT+TGG 0.414768 3_1:-91991420 None:intergenic
ATATGGAAATGCAGGGTGTC+TGG 0.421915 3_1:-91991784 None:intergenic
CCTAATCAATCATCACTAAT+GGG 0.422397 3_1:-91992267 None:intergenic
CTCGAAAAGCGGGAAGCAAT+AGG 0.424171 3_1:+91988884 Msa0387880:CDS
GGTGGCTTATATTCAACATC+TGG 0.425251 3_1:-91991246 None:intergenic
TGCATACCTCTTTGGACATC+AGG 0.425484 3_1:-91991894 None:intergenic
ATATACATTTATCAGGAAAC+TGG 0.426195 3_1:+91990103 Msa0387880:intron
AAAGCTGAAATCAGACTTGA+AGG 0.427089 3_1:-91990832 None:intergenic
AGTAGCTTGACTGTTTGGTC+TGG 0.429015 3_1:-91991580 None:intergenic
CCGATCTCTGCTTCCTTCAT+CGG 0.429253 3_1:+91987320 Msa0387880:five_prime_UTR
ATTTGTGGGACTTGAGATCT+TGG 0.429834 3_1:-91991822 None:intergenic
CCTAGACCACCATCGTCTTT+GGG 0.430690 3_1:+91991333 Msa0387880:CDS
ATTTGGTCTGCAGGATGTGC+TGG 0.431219 3_1:-91991999 None:intergenic
CGAGAGAAACGGGTCTTGTA+GGG 0.433708 3_1:-91991215 None:intergenic
GTTAATGGCTGGTTAGCTAT+TGG 0.434006 3_1:-91991150 None:intergenic
AAAGAGAAATTGCATGAGAA+GGG 0.436106 3_1:-91990618 None:intergenic
TGCCCCTCAAATGCAAAACT+TGG 0.437679 3_1:+91991866 Msa0387880:CDS
GTAAAATTTCCCGAATTTGA+AGG 0.438768 3_1:-91991513 None:intergenic
TAATTTCATAGATTAGTAAT+GGG 0.438971 3_1:+91992143 Msa0387880:three_prime_UTR
CTTCCATTAGCTCAGCAATC+AGG 0.444772 3_1:+91991438 Msa0387880:CDS
GAAAGAGAAATTGCATGAGA+AGG 0.446350 3_1:-91990619 None:intergenic
TCGACAAAGCTATCCTGCTC+AGG 0.450978 3_1:+91991920 Msa0387880:CDS
TAAAGGGGTATGAGATGGTA+AGG 0.453984 3_1:-91990728 None:intergenic
AACCCAGATGAAAGCAAGTC+TGG 0.456417 3_1:+91988723 Msa0387880:CDS
TATCCTGGGTACAAATTTGT+TGG 0.457043 3_1:+91989928 Msa0387880:CDS
GGATCATAAATTTGGTCTGC+AGG 0.458027 3_1:-91992008 None:intergenic
TCAACGCCTCAACCTTTGTC+TGG 0.458854 3_1:+91991114 Msa0387880:CDS
AACAATCCCTCCTTGGCGTC+CGG 0.461178 3_1:+91991972 Msa0387880:CDS
TTCTCTTTCTCTTGAAAACC+AGG 0.463182 3_1:+91990633 Msa0387880:CDS
AGCCAGACTTGCTTTCATCT+GGG 0.463396 3_1:-91988725 None:intergenic
CTAATTTCATAGATTAGTAA+TGG 0.464754 3_1:+91992142 Msa0387880:three_prime_UTR
AATGCATCCTGTGTCGGATC+AGG 0.465476 3_1:-91988414 None:intergenic
CCAGGATTACCTTTCGGGTG+TGG 0.466921 3_1:-91992056 None:intergenic
GGAAATTAGTAGTTCAATGA+TGG 0.468823 3_1:-91990352 None:intergenic
GGTTGTGGACCGAGAGAAAC+GGG 0.471798 3_1:-91991225 None:intergenic
GGCGGCGTGCGCGGACCAGA+AGG 0.471854 3_1:-91991627 None:intergenic
GAATCAGCAACATATTTGGC+TGG 0.473232 3_1:-91991269 None:intergenic
CTTGGCGAAGGAAATGAAAC+AGG 0.476112 3_1:-91991402 None:intergenic
AATGAAAGTGAAGCATTTGT+TGG 0.476455 3_1:-91991036 None:intergenic
TGCCGTGAGGGGTTAATGGC+TGG 0.476961 3_1:-91991161 None:intergenic
AAGATCTCAAGTCCCACAAA+TGG 0.477988 3_1:+91991824 Msa0387880:CDS
TATGGGGCTGATGGCTCCAC+CGG 0.478931 3_1:+91991185 Msa0387880:CDS
AATGGGTGGAATCCAGAAAC+AGG 0.480800 3_1:-91990871 None:intergenic
ATTTCCCGAATTTGAAGGCA+TGG 0.481988 3_1:-91991508 None:intergenic
TCTGCACCACACAAGATGTC+TGG 0.482394 3_1:+91988201 Msa0387880:exon
TGACCAGCATATGGAAATGC+AGG 0.484597 3_1:-91991792 None:intergenic
CCCAAAGACGATGGTGGTCT+AGG 0.486702 3_1:-91991333 None:intergenic
TGAGAAGTTATTGGAGGGAG+AGG 0.486959 3_1:+91987222 None:intergenic
GTAGCTTGACTGTTTGGTCT+GGG 0.488055 3_1:-91991579 None:intergenic
AGAGGCCATGCTCCCTGAGC+AGG 0.492143 3_1:-91991933 None:intergenic
GGTGGCCCAACTTGACCAAA+AGG 0.492353 3_1:-91990973 None:intergenic
AAACAGTCAAGCTACTACTC+AGG 0.493193 3_1:+91991587 Msa0387880:CDS
CACCCTGCATTTCCATATGC+TGG 0.496063 3_1:+91991789 Msa0387880:CDS
GGTGCAGGTTGACCAGCATA+TGG 0.497213 3_1:-91991801 None:intergenic
CGACACAGGATGCATTTGTC+AGG 0.498014 3_1:+91988421 Msa0387880:CDS
GTTGTCCAGTTGGTGTTGGT+TGG 0.498904 3_1:-91991074 None:intergenic
TGACCAAAAGGATTTGTTTG+AGG 0.501608 3_1:-91990961 None:intergenic
AAGTTCCTCATACCCATTTG+TGG 0.502789 3_1:-91991837 None:intergenic
TTACAGGTCCAAGAATATCC+TGG 0.502819 3_1:+91989913 Msa0387880:intron
TGGAGTTGTCCAGTTGGTGT+TGG 0.507043 3_1:-91991078 None:intergenic
CCCAGTTACAAGCCTCCACC+TGG 0.509104 3_1:+91989023 Msa0387880:CDS
GGGACTTGAGATCTTGGTGC+AGG 0.510647 3_1:-91991816 None:intergenic
ACTTGATAGTAGTCTGCATT+GGG 0.511196 3_1:-91991552 None:intergenic
AAGTCCCACAAATGGGTATG+AGG 0.511470 3_1:+91991832 Msa0387880:CDS
TCACGGCAATATGGGGCTGA+TGG 0.513585 3_1:+91991176 Msa0387880:CDS
CACTTGATAGTAGTCTGCAT+TGG 0.513755 3_1:-91991553 None:intergenic
AGTTCCTCATACCCATTTGT+GGG 0.517946 3_1:-91991836 None:intergenic
GGAGATCACTTTCAATACTC+TGG 0.518595 3_1:+91990691 Msa0387880:CDS
GATTGCTGAGCTAATGGAAG+TGG 0.519966 3_1:-91991435 None:intergenic
CACTCAGAACTCAACGTTGG+TGG 0.520133 3_1:+91988695 Msa0387880:CDS
ACTGCTGATTTGGAATAAAT+GGG 0.521311 3_1:-91990888 None:intergenic
ATATGTTGACATGCATCTCT+TGG 0.521419 3_1:-91990293 None:intergenic
TAATCAGAAGCGACTGGAGA+AGG 0.523062 3_1:+91989975 Msa0387880:CDS
GGAATACAGTAAGTCATCAA+AGG 0.524589 3_1:-91992214 None:intergenic
GAGAGAGAGAGTACCGATGA+AGG 0.525455 3_1:-91987333 None:intergenic
CCACACCCGAAAGGTAATCC+TGG 0.525917 3_1:+91992056 Msa0387880:CDS
GCGTTGAAGAGACTGATGTC+TGG 0.527033 3_1:-91991098 None:intergenic
AAATTGAGAGGAAATCAAGA+TGG 0.527290 3_1:+91988388 Msa0387880:CDS
TCAGCCCCATATTGCCGTGA+GGG 0.531656 3_1:-91991173 None:intergenic
CTGCAGGTTGAAACACAGCC+TGG 0.532102 3_1:-91990651 None:intergenic
GAATACAGTAAGTCATCAAA+GGG 0.532760 3_1:-91992213 None:intergenic
TATGGAAATGCAGGGTGTCT+GGG 0.533513 3_1:-91991783 None:intergenic
AATTGAGAGGAAATCAAGAT+GGG 0.534663 3_1:+91988389 Msa0387880:CDS
GAATGAACAGTTCCTGGCAT+TGG 0.534901 3_1:-91991357 None:intergenic
AGCCTCTTCAAAGCTTTCAA+AGG 0.535341 3_1:+91991673 Msa0387880:CDS
AAAGGTAATCCTGGAAAATG+AGG 0.535442 3_1:+91992065 Msa0387880:CDS
GTTTAGCAACAATCCCTCCT+TGG 0.535610 3_1:+91991965 Msa0387880:CDS
TGCATTTGTCAGGAAGGCTA+AGG 0.536700 3_1:+91988431 Msa0387880:CDS
GAACCAATACTTACAGGCAA+AGG 0.537584 3_1:-91989077 None:intergenic
TGCTGGCTTACCGGACGCCA+AGG 0.537749 3_1:-91991982 None:intergenic
TCGTCTTTGGGACCAATGCC+AGG 0.538288 3_1:+91991345 Msa0387880:CDS
GCATCTCTTGGTAACCGCAC+TGG 0.538752 3_1:-91990281 None:intergenic
AGATCTCAAGTCCCACAAAT+GGG 0.542336 3_1:+91991825 Msa0387880:CDS
GCTATCCTGCTCAGGGAGCA+TGG 0.543642 3_1:+91991928 Msa0387880:CDS
AATCAGCAACATATTTGGCT+GGG 0.544073 3_1:-91991268 None:intergenic
CCTACAAGACCCGTTTCTCT+CGG 0.545468 3_1:+91991216 Msa0387880:CDS
AGCAACATATTTGGCTGGGG+TGG 0.546173 3_1:-91991264 None:intergenic
GACACAAGTCTCCAACCAGC+TGG 0.547951 3_1:+91991695 Msa0387880:CDS
AGCAAGGAGTTGTGGATTTG+GGG 0.548336 3_1:-91990776 None:intergenic
TTGCTAAACTTCTGATTCAG+AGG 0.548374 3_1:-91991951 None:intergenic
GGCTTACCGGACGCCAAGGA+GGG 0.550715 3_1:-91991978 None:intergenic
GGCGTGCGCGGACCAGAAGG+CGG 0.551050 3_1:-91991624 None:intergenic
ATTACAGAAGGATTTCTTGG+TGG 0.551389 3_1:-91990991 None:intergenic
GCAAATAAAGGGGTATGAGA+TGG 0.551801 3_1:-91990733 None:intergenic
GTCCTTTGAAAGCTTTGAAG+AGG 0.552634 3_1:-91991675 None:intergenic
AATGCTAGAACTCGAAAAGC+GGG 0.554196 3_1:+91988874 Msa0387880:CDS
AACCTAAATGGCGGCGTGCG+CGG 0.558256 3_1:-91991636 None:intergenic
TTCCAGGGTGAAATTAAACC+AGG 0.558811 3_1:+91990249 Msa0387880:intron
ACACTGACAAATACGAAATG+AGG 0.559712 3_1:+91992114 Msa0387880:three_prime_UTR
CTGACAAATGCATCCTGTGT+CGG 0.560067 3_1:-91988420 None:intergenic
AGGTGATAATCAGAAGCGAC+TGG 0.560138 3_1:+91989969 Msa0387880:CDS
TTTAACAATGGTTTAAAACC+AGG 0.560425 3_1:-91989041 None:intergenic
GGTCTTATTTATGGGACTGA+AGG 0.561574 3_1:+91989949 Msa0387880:CDS
CCAGGTGGAGGCTTGTAACT+GGG 0.561595 3_1:-91989023 None:intergenic
TTATATTCAACATCTGGTTG+TGG 0.562195 3_1:-91991240 None:intergenic
TTATGTGCACTTATTACAGA+AGG 0.562966 3_1:-91991003 None:intergenic
TGGTTGTGGACCGAGAGAAA+CGG 0.564956 3_1:-91991226 None:intergenic
TTTGAAGGCATGGAGGCCAA+TGG 0.565210 3_1:-91991498 None:intergenic
TACAGGTCCAAGAATATCCT+GGG 0.566528 3_1:+91989914 Msa0387880:intron
GCAGAGACGTAAGCTTCAGA+TGG 0.570381 3_1:-91991720 None:intergenic
ACCTCTTTGGACATCAGGAC+TGG 0.571413 3_1:-91991889 None:intergenic
ATATCCTAAAGAATATTACA+TGG 0.574779 3_1:-91992380 None:intergenic
ATACGCCCACGTAAAACCAT+TGG 0.575532 3_1:+91991482 Msa0387880:CDS
GAAGGGCTCATTGTTTGTGA+TGG 0.577438 3_1:-91990814 None:intergenic
GAAAATGGGGTGCTCTAGCA+AGG 0.579347 3_1:-91990792 None:intergenic
ACTACTAATTTCCTCTGTAA+CGG 0.580767 3_1:+91990362 Msa0387880:CDS
ATTGGGCCGCTGTCCTTGAA+AGG 0.581635 3_1:-91991535 None:intergenic
GGATTACCTTTCGGGTGTGG+AGG 0.584094 3_1:-91992053 None:intergenic
CCGCACTGGACATCAGTGCC+TGG 0.584220 3_1:-91990267 None:intergenic
CCGATGAAGGAAGCAGAGAT+CGG 0.584547 3_1:-91987320 None:intergenic
AGTATTCATCCACATCATGC+AGG 0.586151 3_1:+91991303 Msa0387880:CDS
GGTGCTCTAGCAAGGAGTTG+TGG 0.586973 3_1:-91990784 None:intergenic
GATATACCAGACAAAGGTTG+AGG 0.588352 3_1:-91991120 None:intergenic
AACAGTCAAGCTACTACTCA+GGG 0.591753 3_1:+91991588 Msa0387880:CDS
TGTAAGATTTGTGTCGGTGG+TGG 0.592288 3_1:-91990925 None:intergenic
TGGCTCTCAAATTAATAGCA+AGG 0.592840 3_1:+91988743 Msa0387880:CDS
TTCCATCACGAAAACAGCCA+AGG 0.593130 3_1:-91989565 None:intergenic
CGACAAAGCTATCCTGCTCA+GGG 0.593335 3_1:+91991921 Msa0387880:CDS
TGTGGAGGTGCAACAGATGT+AGG 0.593982 3_1:-91992038 None:intergenic
AGAAATTGCATGAGAAGGGG+TGG 0.595200 3_1:-91990614 None:intergenic
AAAGTTCAAAACAAATTGAG+AGG 0.599794 3_1:+91988376 Msa0387880:CDS
ATCAGCAACATATTTGGCTG+GGG 0.601455 3_1:-91991267 None:intergenic
TTCAGATGGATCCAGCTGGT+TGG 0.603188 3_1:-91991706 None:intergenic
GGCTGGTTAGCTATTGGTGA+CGG 0.603499 3_1:-91991144 None:intergenic
GATGTCTGGAGTTGTCCAGT+TGG 0.603942 3_1:-91991084 None:intergenic
GGAGCGGATATTCTTGGCGA+AGG 0.604340 3_1:-91991414 None:intergenic
GCGTATTGAGAGGCAGAAGT+AGG 0.604696 3_1:-91991465 None:intergenic
AACAATGGTTTAAAACCAGG+TGG 0.604788 3_1:-91989038 None:intergenic
AACCAGCCATTAACCCCTCA+CGG 0.606869 3_1:+91991159 Msa0387880:CDS
AAGAGAAATTGCATGAGAAG+GGG 0.608351 3_1:-91990617 None:intergenic
TAACCCCTCACGGCAATATG+GGG 0.609736 3_1:+91991169 Msa0387880:CDS
AAGCTGAAATCAGACTTGAA+GGG 0.612202 3_1:-91990831 None:intergenic
AATGGTTTAAAACCAGGTGG+AGG 0.613040 3_1:-91989035 None:intergenic
TGGCTTACCGGACGCCAAGG+AGG 0.615968 3_1:-91991979 None:intergenic
TCATAGATTAGTAATGGGCA+CGG 0.617986 3_1:+91992148 Msa0387880:three_prime_UTR
GGATGAATACTACCAGGTCG+TGG 0.617992 3_1:-91991291 None:intergenic
AGAAACAGATACAGAAGGTG+TGG 0.618597 3_1:-91990554 None:intergenic
AAGCTTCAGATGGATCCAGC+TGG 0.622116 3_1:-91991710 None:intergenic
ACAGGATGCATTTGTCAGGA+AGG 0.622340 3_1:+91988425 Msa0387880:CDS
GGTGACATTCCTGCATGATG+TGG 0.623925 3_1:-91991312 None:intergenic
TGGAATCCAGAAACAGGTGG+AGG 0.625781 3_1:-91990865 None:intergenic
TGCTGTAAGATTTGTGTCGG+TGG 0.629521 3_1:-91990928 None:intergenic
GAGTGCTGTAAGATTTGTGT+CGG 0.632626 3_1:-91990931 None:intergenic
AAGGTAATCCTGGAAAATGA+GGG 0.633788 3_1:+91992066 Msa0387880:CDS
TTCGTGATGGAAAATGCTGT+CGG 0.635641 3_1:+91989576 Msa0387880:CDS
ATGGGGACCTGATCCGACAC+AGG 0.637383 3_1:+91988407 Msa0387880:CDS
GCAAGGAGTTGTGGATTTGG+GGG 0.641065 3_1:-91990775 None:intergenic
AAATGCTAGAACTCGAAAAG+CGG 0.642409 3_1:+91988873 Msa0387880:CDS
CAGCCCCATATTGCCGTGAG+GGG 0.643697 3_1:-91991172 None:intergenic
GAGAGAAACGGGTCTTGTAG+GGG 0.644488 3_1:-91991214 None:intergenic
GCCAGTCCTGATGTCCAAAG+AGG 0.645143 3_1:+91991888 Msa0387880:CDS
ATGTTGCTGATTCCACGACC+TGG 0.646953 3_1:+91991279 Msa0387880:CDS
GGCATTGGTCCCAAAGACGA+TGG 0.647277 3_1:-91991342 None:intergenic
AGAGAAACGGGTCTTGTAGG+GGG 0.647357 3_1:-91991213 None:intergenic
ATGTCAACTCACCGTTACAG+AGG 0.648823 3_1:-91990373 None:intergenic
CTGAGCTAATGGAAGTGGAG+CGG 0.650968 3_1:-91991430 None:intergenic
GGAAATGCAGGGTGTCTGGG+TGG 0.652818 3_1:-91991780 None:intergenic
TCATTAGTCCCTATTATCCG+AGG 0.654001 3_1:+91988315 Msa0387880:CDS
TGAGCTACGTCAGACCACTA+CGG 0.654542 3_1:+91987261 Msa0387880:five_prime_UTR
AAATCTTACAGCACTCACAA+TGG 0.658430 3_1:+91990938 Msa0387880:CDS
ATTGTTTGTGATGGAAAATG+GGG 0.661649 3_1:-91990805 None:intergenic
GACCAGCATATGGAAATGCA+GGG 0.662409 3_1:-91991791 None:intergenic
AGACCAACAAATTTGTACCC+AGG 0.663255 3_1:-91989931 None:intergenic
GTTGCACCTCCACACCCGAA+AGG 0.663887 3_1:+91992047 Msa0387880:CDS
ATTGGTCCCAAAGACGATGG+TGG 0.664092 3_1:-91991339 None:intergenic
CAATGCAGACTACTATCAAG+TGG 0.664785 3_1:+91991554 Msa0387880:CDS
ATCAGCCCCATATTGCCGTG+AGG 0.664920 3_1:-91991174 None:intergenic
GCAGCCAGTACACAAATGCA+AGG 0.664990 3_1:+91990670 Msa0387880:CDS
GGCACAGCAAACCTAAATGG+CGG 0.665012 3_1:-91991645 None:intergenic
GCCAGAAGAAGCAAATAAAG+GGG 0.669347 3_1:-91990743 None:intergenic
GGGTGGAATCCAGAAACAGG+TGG 0.670920 3_1:-91990868 None:intergenic
GCTGATTTGGAATAAATGGG+TGG 0.671775 3_1:-91990885 None:intergenic
TCTCCAGAAACAGATACAGA+AGG 0.675375 3_1:-91990559 None:intergenic
AAAGGGGTATGAGATGGTAA+GGG 0.676939 3_1:-91990727 None:intergenic
CATGGAACAAAAGCAGACAC+AGG 0.677149 3_1:+91990142 Msa0387880:CDS
TCCCGAATTTGAAGGCATGG+AGG 0.679044 3_1:-91991505 None:intergenic
GTGATGGAAAATGCTGTCGG+AGG 0.689250 3_1:+91989579 Msa0387880:CDS
AGACACTCAGAACTCAACGT+TGG 0.697590 3_1:+91988692 Msa0387880:CDS
ATTGAGAGGAAATCAAGATG+GGG 0.702113 3_1:+91988390 Msa0387880:CDS
GACGGCGATATACCAGACAA+AGG 0.704314 3_1:-91991126 None:intergenic
TGATGTGGATGAATACTACC+AGG 0.708791 3_1:-91991297 None:intergenic
AGTGCGCGTAGCCACCGTAG+TGG 0.717946 3_1:-91987275 None:intergenic
AGTCAAGCTACTACTCAGGG+TGG 0.734032 3_1:+91991591 Msa0387880:CDS
GTAGCTCCAGACATCTTGTG+TGG 0.735809 3_1:-91988207 None:intergenic
CCAGGCACTGATGTCCAGTG+CGG 0.751204 3_1:+91990267 Msa0387880:CDS
GCTACGTCAGACCACTACGG+TGG 0.768773 3_1:+91987264 Msa0387880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAGTATATATTAG+TGG + chr3_1:91988059-91988078 Msa0387880:intron 10.0%
!! ATTTAATATATACATTTATC+AGG + chr3_1:91990096-91990115 Msa0387880:intron 10.0%
!!! TGAAAGTATAAACATTAATT+TGG - chr3_1:91987507-91987526 None:intergenic 15.0%
!! ATAAAATGCTTAATATAGTT+GGG + chr3_1:91987548-91987567 Msa0387880:intron 15.0%
!!! TATTTTTCTTTTCTAAATCA+AGG - chr3_1:91987781-91987800 None:intergenic 15.0%
!! CTAAAATTACATTATAAGTT+GGG + chr3_1:91988524-91988543 Msa0387880:intron 15.0%
!! AAAAAGGAAATATATACTTA+AGG - chr3_1:91988918-91988937 None:intergenic 15.0%
!! AATCCATATTATCATTATTA+AGG + chr3_1:91989299-91989318 Msa0387880:intron 15.0%
!! ATCCATATTATCATTATTAA+GGG + chr3_1:91989300-91989319 Msa0387880:intron 15.0%
!! AATATCTTAATGTTATCATT+TGG + chr3_1:91989776-91989795 Msa0387880:intron 15.0%
!! TTAAAAAGTTATACAACAAA+GGG - chr3_1:91989805-91989824 None:intergenic 15.0%
!! AAAGATTAGAATTTAATTCA+GGG - chr3_1:91990064-91990083 None:intergenic 15.0%
!! AAAAGATTAGAATTTAATTC+AGG - chr3_1:91990065-91990084 None:intergenic 15.0%
!!! ACATAACATTTTATGATTTA+TGG + chr3_1:91990409-91990428 Msa0387880:intron 15.0%
!! TAATTTCATAGATTAGTAAT+GGG + chr3_1:91992143-91992162 Msa0387880:three_prime_UTR 15.0%
!!! GTGAAAATATGATTATATTT+TGG - chr3_1:91992350-91992369 None:intergenic 15.0%
!! ATTAATGTTTATACTTTCAG+AGG + chr3_1:91987508-91987527 Msa0387880:intron 20.0%
!! CATAAAATGCTTAATATAGT+TGG + chr3_1:91987547-91987566 Msa0387880:intron 20.0%
!! GAAATATTCTCATATGATAA+AGG + chr3_1:91987875-91987894 Msa0387880:intron 20.0%
!! TTTGATTATATAACTACCAA+CGG - chr3_1:91988040-91988059 None:intergenic 20.0%
!!! ACAAAATAGTTTGTGTTATT+TGG + chr3_1:91988087-91988106 Msa0387880:intron 20.0%
!! GCTAAAATTACATTATAAGT+TGG + chr3_1:91988523-91988542 Msa0387880:intron 20.0%
!! AAACTACTGATGTTTATTTA+TGG + chr3_1:91988836-91988855 Msa0387880:intron 20.0%
!! AACAACAAATTTAAATAGCA+CGG - chr3_1:91989125-91989144 None:intergenic 20.0%
!! TCATTAGTTATGAAAAGTAA+AGG + chr3_1:91989157-91989176 Msa0387880:intron 20.0%
!! TCCATATTATCATTATTAAG+GGG + chr3_1:91989301-91989320 Msa0387880:intron 20.0%
!! CAACATAAAGAAATACTATA+AGG - chr3_1:91989347-91989366 None:intergenic 20.0%
!! GAATATCGTAATTGTAATAT+AGG - chr3_1:91989698-91989717 None:intergenic 20.0%
!! CTTAAAAAGTTATACAACAA+AGG - chr3_1:91989806-91989825 None:intergenic 20.0%
!!! AAATTTGTTGGTCTTATTTA+TGG + chr3_1:91989940-91989959 Msa0387880:CDS 20.0%
!!! AATTTGTTGGTCTTATTTAT+GGG + chr3_1:91989941-91989960 Msa0387880:CDS 20.0%
!! CTAATTTCATAGATTAGTAA+TGG + chr3_1:91992142-91992161 Msa0387880:three_prime_UTR 20.0%
!! TAAACCATGTAATATTCTTT+AGG + chr3_1:91992376-91992395 Msa0387880:three_prime_UTR 20.0%
!! ATATCCTAAAGAATATTACA+TGG - chr3_1:91992383-91992402 None:intergenic 20.0%
!! TATAAACATTAATTTGGCGT+TGG - chr3_1:91987501-91987520 None:intergenic 25.0%
!!! CTATTTTCAGCTTATTTTCA+TGG + chr3_1:91987702-91987721 Msa0387880:intron 25.0%
! TAATAAACTACTGTTACTGA+TGG + chr3_1:91987920-91987939 Msa0387880:intron 25.0%
! TACAAATGTTTACTCTACAT+AGG + chr3_1:91987992-91988011 Msa0387880:intron 25.0%
! ACAAATGTTTACTCTACATA+GGG + chr3_1:91987993-91988012 Msa0387880:intron 25.0%
!!! ATCCTAATAACTTGTTTTTG+GGG - chr3_1:91988296-91988315 None:intergenic 25.0%
!!! GATCCTAATAACTTGTTTTT+GGG - chr3_1:91988297-91988316 None:intergenic 25.0%
!!! TGATCCTAATAACTTGTTTT+TGG - chr3_1:91988298-91988317 None:intergenic 25.0%
! AAAGTTCAAAACAAATTGAG+AGG + chr3_1:91988376-91988395 Msa0387880:CDS 25.0%
!!! ATTCCAACAACTTTGAAATT+TGG - chr3_1:91988653-91988672 None:intergenic 25.0%
!!! TCTAATTTTAGTATTTCACC+TGG - chr3_1:91989002-91989021 None:intergenic 25.0%
!! TTTAACAATGGTTTAAAACC+AGG - chr3_1:91989044-91989063 None:intergenic 25.0%
!! ACATTGTCTTCTTTTAACAA+TGG - chr3_1:91989056-91989075 None:intergenic 25.0%
!!! ATTTTAGAACCAATACTTAC+AGG - chr3_1:91989086-91989105 None:intergenic 25.0%
! AATTTAAATAGCACGGAATT+GGG - chr3_1:91989118-91989137 None:intergenic 25.0%
! AAATTTAAATAGCACGGAAT+TGG - chr3_1:91989119-91989138 None:intergenic 25.0%
! AAAGTAAAGGATACATTTAC+TGG + chr3_1:91989170-91989189 Msa0387880:intron 25.0%
! ATGATAATATGGATTTGACA+AGG - chr3_1:91989294-91989313 None:intergenic 25.0%
! ACCCCTTAATAATGATAATA+TGG - chr3_1:91989305-91989324 None:intergenic 25.0%
!!! GCCTTATTTTATTTCTTCAT+GGG + chr3_1:91989423-91989442 Msa0387880:intron 25.0%
! ACCCATGAAGAAATAAAATA+AGG - chr3_1:91989427-91989446 None:intergenic 25.0%
! AACATTCTTTCAAGAATATG+AGG - chr3_1:91989606-91989625 None:intergenic 25.0%
! TACAATTACGATATTCAAGT+AGG + chr3_1:91989702-91989721 Msa0387880:intron 25.0%
! AAGATTAGATACCAACAAAA+TGG - chr3_1:91990006-91990025 None:intergenic 25.0%
! ATATACATTTATCAGGAAAC+TGG + chr3_1:91990103-91990122 Msa0387880:intron 25.0%
!! TGTTCCATGAATTTTTATCT+TGG - chr3_1:91990131-91990150 None:intergenic 25.0%
! AGAAAGTAAGTTCTTTAATG+TGG + chr3_1:91990167-91990186 Msa0387880:intron 25.0%
! GTGAAAATGGATCATAAATT+TGG - chr3_1:91992019-91992038 None:intergenic 25.0%
!!! TTATTTCTAAGCAGAAAGTT+TGG + chr3_1:91992184-91992203 Msa0387880:three_prime_UTR 25.0%
!!! AAAGAAAGGTTGGTTTAAAA+AGG - chr3_1:91992238-91992257 None:intergenic 25.0%
CGTAAATGAAGATTTGAAGA+GGG - chr3_1:91987402-91987421 None:intergenic 30.0%
TCGTAAATGAAGATTTGAAG+AGG - chr3_1:91987403-91987422 None:intergenic 30.0%
! CCTATGTTTAAGTTTGAATC+AGG - chr3_1:91987441-91987460 None:intergenic 30.0%
CCTGATTCAAACTTAAACAT+AGG + chr3_1:91987438-91987457 Msa0387880:intron 30.0%
ATGTTTATACTTTCAGAGGT+CGG + chr3_1:91987512-91987531 Msa0387880:intron 30.0%
GTTAGTAGATAAGCTTAAAG+AGG - chr3_1:91987633-91987652 None:intergenic 30.0%
!! CTACTAACATAAGTTTTGTG+AGG + chr3_1:91987645-91987664 Msa0387880:intron 30.0%
ATCAAGGAAGCTATAAAATG+AGG - chr3_1:91987765-91987784 None:intergenic 30.0%
! ATCATTTCTAAGGGTATGTT+TGG - chr3_1:91987834-91987853 None:intergenic 30.0%
GCACTTAGTATCATTTCTAA+GGG - chr3_1:91987843-91987862 None:intergenic 30.0%
AGCACTTAGTATCATTTCTA+AGG - chr3_1:91987844-91987863 None:intergenic 30.0%
!! CAAAAAAGTACTGTTACTGT+TGG + chr3_1:91987949-91987968 Msa0387880:intron 30.0%
TTGTACATGTGATCAAAGAT+TGG - chr3_1:91988134-91988153 None:intergenic 30.0%
GATCACATGTACAAAGTTAT+TGG + chr3_1:91988140-91988159 Msa0387880:intron 30.0%
ATCCCCAAAAACAAGTTATT+AGG + chr3_1:91988291-91988310 Msa0387880:CDS 30.0%
AAATTGAGAGGAAATCAAGA+TGG + chr3_1:91988388-91988407 Msa0387880:CDS 30.0%
AATTGAGAGGAAATCAAGAT+GGG + chr3_1:91988389-91988408 Msa0387880:CDS 30.0%
ATAACAGAGAATGCTTAGAA+AGG - chr3_1:91988485-91988504 None:intergenic 30.0%
TTAATAATTCGCATGAGTTC+TGG + chr3_1:91988569-91988588 Msa0387880:intron 30.0%
!! ATTGGTTCTAAAATTCTGCT+AGG + chr3_1:91989092-91989111 Msa0387880:intron 30.0%
ATTATCATTATTAAGGGGTG+TGG + chr3_1:91989306-91989325 Msa0387880:intron 30.0%
GATTTGCACCAATACATATT+AGG + chr3_1:91989393-91989412 Msa0387880:intron 30.0%
!!! GGCCTTATTTTATTTCTTCA+TGG + chr3_1:91989422-91989441 Msa0387880:intron 30.0%
TAACACTCATTAACATGCTA+AGG - chr3_1:91989472-91989491 None:intergenic 30.0%
TTAGTTAACTGCTCAAAAAC+AGG + chr3_1:91989489-91989508 Msa0387880:intron 30.0%
GAAAACTAAGTTGCAGTATA+AGG + chr3_1:91989626-91989645 Msa0387880:CDS 30.0%
ATCGTAATTGTAATATAGGC+TGG - chr3_1:91989694-91989713 None:intergenic 30.0%
! AGAAGGTAAAACCATTTTGT+TGG + chr3_1:91989992-91990011 Msa0387880:intron 30.0%
GGTACCAAGATAAAAATTCA+TGG + chr3_1:91990124-91990143 Msa0387880:CDS 30.0%
!!! AGCTGATAGTTTTGATAAAG+TGG + chr3_1:91990317-91990336 Msa0387880:CDS 30.0%
GGAAATTAGTAGTTCAATGA+TGG - chr3_1:91990355-91990374 None:intergenic 30.0%
ACTACTAATTTCCTCTGTAA+CGG + chr3_1:91990362-91990381 Msa0387880:CDS 30.0%
AAAGAGAAATTGCATGAGAA+GGG - chr3_1:91990621-91990640 None:intergenic 30.0%
! ATTGTTTGTGATGGAAAATG+GGG - chr3_1:91990808-91990827 None:intergenic 30.0%
! CATTGTTTGTGATGGAAAAT+GGG - chr3_1:91990809-91990828 None:intergenic 30.0%
! TCATTGTTTGTGATGGAAAA+TGG - chr3_1:91990810-91990829 None:intergenic 30.0%
!! ACTGCTGATTTGGAATAAAT+GGG - chr3_1:91990891-91990910 None:intergenic 30.0%
!! AACTGCTGATTTGGAATAAA+TGG - chr3_1:91990892-91990911 None:intergenic 30.0%
CTTATTACAGAAGGATTTCT+TGG - chr3_1:91990997-91991016 None:intergenic 30.0%
TTATGTGCACTTATTACAGA+AGG - chr3_1:91991006-91991025 None:intergenic 30.0%
! AATGAAAGTGAAGCATTTGT+TGG - chr3_1:91991039-91991058 None:intergenic 30.0%
TTATATTCAACATCTGGTTG+TGG - chr3_1:91991243-91991262 None:intergenic 30.0%
TCAACTGGAAACCATTTATT+AGG + chr3_1:91991378-91991397 Msa0387880:CDS 30.0%
ATGAAACAGGTCCTAATAAA+TGG - chr3_1:91991392-91991411 None:intergenic 30.0%
GTAAAATTTCCCGAATTTGA+AGG - chr3_1:91991516-91991535 None:intergenic 30.0%
GAAAATGAGGGAATTGAATA+TGG + chr3_1:91992078-91992097 Msa0387880:exon 30.0%
GAATACAGTAAGTCATCAAA+GGG - chr3_1:91992216-91992235 None:intergenic 30.0%
CCTAATCAATCATCACTAAT+GGG - chr3_1:91992270-91992289 None:intergenic 30.0%
TCCTAATCAATCATCACTAA+TGG - chr3_1:91992271-91992290 None:intergenic 30.0%
! TGAATTTACACTCGATGTTT+TGG + chr3_1:91992420-91992439 Msa0387880:three_prime_UTR 30.0%
! TATGTTTGGATGGAGGATTT+TGG - chr3_1:91987820-91987839 None:intergenic 35.0%
! TTTCTAAGGGTATGTTTGGA+TGG - chr3_1:91987830-91987849 None:intergenic 35.0%
TACATGTGATCAAAGATTGG+TGG - chr3_1:91988131-91988150 None:intergenic 35.0%
AGCCAAAAGCTCTCTAAATT+TGG + chr3_1:91988249-91988268 Msa0387880:CDS 35.0%
! CACCAAATTTAGAGAGCTTT+TGG - chr3_1:91988254-91988273 None:intergenic 35.0%
!! TCTAAATTTGGTGCCAAATC+TGG + chr3_1:91988261-91988280 Msa0387880:CDS 35.0%
!!! TTTTAGCTCCTCGGATAATA+GGG - chr3_1:91988326-91988345 None:intergenic 35.0%
!!! TTTTTAGCTCCTCGGATAAT+AGG - chr3_1:91988327-91988346 None:intergenic 35.0%
ATTGAGAGGAAATCAAGATG+GGG + chr3_1:91988390-91988409 Msa0387880:CDS 35.0%
GGACCAAATTTCAAAGTTGT+TGG + chr3_1:91988647-91988666 Msa0387880:CDS 35.0%
TGGCTCTCAAATTAATAGCA+AGG + chr3_1:91988743-91988762 Msa0387880:CDS 35.0%
AAATGCTAGAACTCGAAAAG+CGG + chr3_1:91988873-91988892 Msa0387880:CDS 35.0%
ATTAAAGGGGAGGAACAAAA+AGG - chr3_1:91988934-91988953 None:intergenic 35.0%
GCAGGCTATAAGAATTAAAG+GGG - chr3_1:91988947-91988966 None:intergenic 35.0%
CGCAGGCTATAAGAATTAAA+GGG - chr3_1:91988948-91988967 None:intergenic 35.0%
ACGCAGGCTATAAGAATTAA+AGG - chr3_1:91988949-91988968 None:intergenic 35.0%
CCTGGATATGATTAACATCA+AGG - chr3_1:91988984-91989003 None:intergenic 35.0%
CCTTGATGTTAATCATATCC+AGG + chr3_1:91988981-91989000 Msa0387880:intron 35.0%
! AACAATGGTTTAAAACCAGG+TGG - chr3_1:91989041-91989060 None:intergenic 35.0%
TGCAATATCTTCCCAGTTAT+TGG + chr3_1:91989236-91989255 Msa0387880:intron 35.0%
GTGAATAGCAGCAATATACT+CGG + chr3_1:91989258-91989277 Msa0387880:intron 35.0%
TTTATGTTGTGAGCTGATGA+GGG + chr3_1:91989358-91989377 Msa0387880:intron 35.0%
TTGCACCAATACATATTAGG+CGG + chr3_1:91989396-91989415 Msa0387880:intron 35.0%
TCATGGGTTCAAATTGAACA+TGG + chr3_1:91989439-91989458 Msa0387880:intron 35.0%
! TTCTGGAAAAGGAAAAGTTC+TGG - chr3_1:91989525-91989544 None:intergenic 35.0%
! GAGAAGAACATTTCTGGAAA+AGG - chr3_1:91989536-91989555 None:intergenic 35.0%
ATGGATGAGAAGAACATTTC+TGG - chr3_1:91989542-91989561 None:intergenic 35.0%
! TTCTTCTCATCCATTTTCCT+TGG + chr3_1:91989548-91989567 Msa0387880:CDS 35.0%
! AGTTTTCGTTGTAGAACTTC+AGG - chr3_1:91989874-91989893 None:intergenic 35.0%
ATATGCAGTACCATCTTTAC+AGG + chr3_1:91989897-91989916 Msa0387880:intron 35.0%
TATTCTTGGACCTGTAAAGA+TGG - chr3_1:91989910-91989929 None:intergenic 35.0%
ATTTGTACCCAGGATATTCT+TGG - chr3_1:91989924-91989943 None:intergenic 35.0%
TATCCTGGGTACAAATTTGT+TGG + chr3_1:91989928-91989947 Msa0387880:CDS 35.0%
AGATAGGGATTGCATATAAG+AGG - chr3_1:91990029-91990048 None:intergenic 35.0%
GGGATGTCAATCAAAAGATA+GGG - chr3_1:91990044-91990063 None:intergenic 35.0%
AGGGATGTCAATCAAAAGAT+AGG - chr3_1:91990045-91990064 None:intergenic 35.0%
CTTTGTATGTTCCATTTCCA+GGG + chr3_1:91990234-91990253 Msa0387880:intron 35.0%
! GTTTAATTTCACCCTGGAAA+TGG - chr3_1:91990248-91990267 None:intergenic 35.0%
ATATGTTGACATGCATCTCT+TGG - chr3_1:91990296-91990315 None:intergenic 35.0%
TCTTCTATGCTCTTCTATTC+AGG + chr3_1:91990513-91990532 Msa0387880:intron 35.0%
CTTCTATGCTCTTCTATTCA+GGG + chr3_1:91990514-91990533 Msa0387880:intron 35.0%
TTCTATGCTCTTCTATTCAG+GGG + chr3_1:91990515-91990534 Msa0387880:intron 35.0%
AAGAGAAATTGCATGAGAAG+GGG - chr3_1:91990620-91990639 None:intergenic 35.0%
GAAAGAGAAATTGCATGAGA+AGG - chr3_1:91990622-91990641 None:intergenic 35.0%
TTCTCTTTCTCTTGAAAACC+AGG + chr3_1:91990633-91990652 Msa0387880:CDS 35.0%
! ACTTTCAATACTCTGGTTCA+TGG + chr3_1:91990698-91990717 Msa0387880:CDS 35.0%
TGCCAGAAGAAGCAAATAAA+GGG - chr3_1:91990747-91990766 None:intergenic 35.0%
AAGCTGAAATCAGACTTGAA+GGG - chr3_1:91990834-91990853 None:intergenic 35.0%
AAAGCTGAAATCAGACTTGA+AGG - chr3_1:91990835-91990854 None:intergenic 35.0%
! TCAAGTCTGATTTCAGCTTT+TGG + chr3_1:91990835-91990854 Msa0387880:CDS 35.0%
! TGCATAGAAAACTGCTGATT+TGG - chr3_1:91990901-91990920 None:intergenic 35.0%
AAATCTTACAGCACTCACAA+TGG + chr3_1:91990938-91990957 Msa0387880:CDS 35.0%
! TGACCAAAAGGATTTGTTTG+AGG - chr3_1:91990964-91990983 None:intergenic 35.0%
! ACAAATCCTTTTGGTCAAGT+TGG + chr3_1:91990967-91990986 Msa0387880:CDS 35.0%
! CAAATCCTTTTGGTCAAGTT+GGG + chr3_1:91990968-91990987 Msa0387880:CDS 35.0%
ATTACAGAAGGATTTCTTGG+TGG - chr3_1:91990994-91991013 None:intergenic 35.0%
AATCAGCAACATATTTGGCT+GGG - chr3_1:91991271-91991290 None:intergenic 35.0%
! TCGGGAAATTTTACCTTTCA+AGG + chr3_1:91991522-91991541 Msa0387880:CDS 35.0%
! ATTTTACCTTTCAAGGACAG+CGG + chr3_1:91991529-91991548 Msa0387880:CDS 35.0%
! ACTTGATAGTAGTCTGCATT+GGG - chr3_1:91991555-91991574 None:intergenic 35.0%
TTGCTAAACTTCTGATTCAG+AGG - chr3_1:91991954-91991973 None:intergenic 35.0%
! ATTTTCCAGGATTACCTTTC+GGG - chr3_1:91992064-91992083 None:intergenic 35.0%
! CATTTTCCAGGATTACCTTT+CGG - chr3_1:91992065-91992084 None:intergenic 35.0%
AAAGGTAATCCTGGAAAATG+AGG + chr3_1:91992065-91992084 Msa0387880:CDS 35.0%
AAGGTAATCCTGGAAAATGA+GGG + chr3_1:91992066-91992085 Msa0387880:CDS 35.0%
! ATTCAATTCCCTCATTTTCC+AGG - chr3_1:91992077-91992096 None:intergenic 35.0%
ACACTGACAAATACGAAATG+AGG + chr3_1:91992114-91992133 Msa0387880:three_prime_UTR 35.0%
!! TCATAGATTAGTAATGGGCA+CGG + chr3_1:91992148-91992167 Msa0387880:three_prime_UTR 35.0%
GGAATACAGTAAGTCATCAA+AGG - chr3_1:91992217-91992236 None:intergenic 35.0%
GCATTCAGAAAAAGAAAGGT+TGG - chr3_1:91992248-91992267 None:intergenic 35.0%
ATGGGCATTCAGAAAAAGAA+AGG - chr3_1:91992252-91992271 None:intergenic 35.0%
CCCATTAGTGATGATTGATT+AGG + chr3_1:91992267-91992286 Msa0387880:three_prime_UTR 35.0%
! TTTGGATGGAGGATTTTGGA+GGG - chr3_1:91987816-91987835 None:intergenic 40.0%
CATAGGGAATGCATGTTCTT+TGG + chr3_1:91988009-91988028 Msa0387880:intron 40.0%
ATGTTCTTTGGTATTGCCGT+TGG + chr3_1:91988021-91988040 Msa0387880:intron 40.0%
GGGGATAACAAATCCAGATT+TGG - chr3_1:91988277-91988296 None:intergenic 40.0%
TCATTAGTCCCTATTATCCG+AGG + chr3_1:91988315-91988334 Msa0387880:CDS 40.0%
ATCCGAGGAGCTAAAAAAGA+TGG + chr3_1:91988330-91988349 Msa0387880:CDS 40.0%
TCCGAGGAGCTAAAAAAGAT+GGG + chr3_1:91988331-91988350 Msa0387880:CDS 40.0%
GCTAAAAAAGATGGGGTTAC+TGG + chr3_1:91988339-91988358 Msa0387880:CDS 40.0%
AGCATCACTTATTCAGACCT+TGG - chr3_1:91988598-91988617 None:intergenic 40.0%
! ACACCTTTTGTAGATTCGTG+TGG + chr3_1:91988626-91988645 Msa0387880:intron 40.0%
TTCTGAGTGTCTCTAATCTC+TGG - chr3_1:91988684-91988703 None:intergenic 40.0%
AATGCTAGAACTCGAAAAGC+GGG + chr3_1:91988874-91988893 Msa0387880:CDS 40.0%
GGCTATAAGAATTAAAGGGG+AGG - chr3_1:91988944-91988963 None:intergenic 40.0%
AAGGTCATTATCGAATACGC+AGG - chr3_1:91988965-91988984 None:intergenic 40.0%
! AATGGTTTAAAACCAGGTGG+AGG - chr3_1:91989038-91989057 None:intergenic 40.0%
GTTCCTTTGCCTGTAAGTAT+TGG + chr3_1:91989074-91989093 Msa0387880:intron 40.0%
GAACCAATACTTACAGGCAA+AGG - chr3_1:91989080-91989099 None:intergenic 40.0%
GCTGCTATTCACCAATAACT+GGG - chr3_1:91989250-91989269 None:intergenic 40.0%
TGCTGCTATTCACCAATAAC+TGG - chr3_1:91989251-91989270 None:intergenic 40.0%
CTTTATGTTGTGAGCTGATG+AGG + chr3_1:91989357-91989376 Msa0387880:intron 40.0%
TTATGTTGTGAGCTGATGAG+GGG + chr3_1:91989359-91989378 Msa0387880:intron 40.0%
! AGCTGATGAGGGGAAATTTT+AGG + chr3_1:91989369-91989388 Msa0387880:intron 40.0%
ACGAAAACAGCCAAGGAAAA+TGG - chr3_1:91989561-91989580 None:intergenic 40.0%
! TTCGTGATGGAAAATGCTGT+CGG + chr3_1:91989576-91989595 Msa0387880:CDS 40.0%
TTACAGGTCCAAGAATATCC+TGG + chr3_1:91989913-91989932 Msa0387880:intron 40.0%
TACAGGTCCAAGAATATCCT+GGG + chr3_1:91989914-91989933 Msa0387880:intron 40.0%
AGACCAACAAATTTGTACCC+AGG - chr3_1:91989934-91989953 None:intergenic 40.0%
!! GGTCTTATTTATGGGACTGA+AGG + chr3_1:91989949-91989968 Msa0387880:CDS 40.0%
! GTGGCTTTTATTCTGCATCA+AGG + chr3_1:91990186-91990205 Msa0387880:intron 40.0%
GCTTTGTATGTTCCATTTCC+AGG + chr3_1:91990233-91990252 Msa0387880:intron 40.0%
TTCCAGGGTGAAATTAAACC+AGG + chr3_1:91990249-91990268 Msa0387880:intron 40.0%
AGAAACAGATACAGAAGGTG+TGG - chr3_1:91990557-91990576 None:intergenic 40.0%
ACACCTTCTGTATCTGTTTC+TGG + chr3_1:91990556-91990575 Msa0387880:CDS 40.0%
TCTCCAGAAACAGATACAGA+AGG - chr3_1:91990562-91990581 None:intergenic 40.0%
ATCTCCTTGCATTTGTGTAC+TGG - chr3_1:91990677-91990696 None:intergenic 40.0%
GGAGATCACTTTCAATACTC+TGG + chr3_1:91990691-91990710 Msa0387880:CDS 40.0%
! AAAGGGGTATGAGATGGTAA+GGG - chr3_1:91990730-91990749 None:intergenic 40.0%
! TAAAGGGGTATGAGATGGTA+AGG - chr3_1:91990731-91990750 None:intergenic 40.0%
! GCAAATAAAGGGGTATGAGA+TGG - chr3_1:91990736-91990755 None:intergenic 40.0%
! ACCCCTTTATTTGCTTCTTC+TGG + chr3_1:91990742-91990761 Msa0387880:CDS 40.0%
GCCAGAAGAAGCAAATAAAG+GGG - chr3_1:91990746-91990765 None:intergenic 40.0%
CTGCCAGAAGAAGCAAATAA+AGG - chr3_1:91990748-91990767 None:intergenic 40.0%
TAGCAAGGAGTTGTGGATTT+GGG - chr3_1:91990780-91990799 None:intergenic 40.0%
!! GCTGATTTGGAATAAATGGG+TGG - chr3_1:91990888-91990907 None:intergenic 40.0%
! GAGTGCTGTAAGATTTGTGT+CGG - chr3_1:91990934-91990953 None:intergenic 40.0%
! TGGCCTCAAACAAATCCTTT+TGG + chr3_1:91990958-91990977 Msa0387880:CDS 40.0%
!! GTTGGTTGGCTTAAAGAAAC+TGG - chr3_1:91991063-91991082 None:intergenic 40.0%
GATATACCAGACAAAGGTTG+AGG - chr3_1:91991123-91991142 None:intergenic 40.0%
! GTTAATGGCTGGTTAGCTAT+TGG - chr3_1:91991153-91991172 None:intergenic 40.0%
GGTGGCTTATATTCAACATC+TGG - chr3_1:91991249-91991268 None:intergenic 40.0%
ATCAGCAACATATTTGGCTG+GGG - chr3_1:91991270-91991289 None:intergenic 40.0%
GAATCAGCAACATATTTGGC+TGG - chr3_1:91991272-91991291 None:intergenic 40.0%
CGTGGAATCAGCAACATATT+TGG - chr3_1:91991276-91991295 None:intergenic 40.0%
TGATGTGGATGAATACTACC+AGG - chr3_1:91991300-91991319 None:intergenic 40.0%
AGTATTCATCCACATCATGC+AGG + chr3_1:91991303-91991322 Msa0387880:CDS 40.0%
ATTCCTGATTGCTGAGCTAA+TGG - chr3_1:91991444-91991463 None:intergenic 40.0%
ATTTCCCGAATTTGAAGGCA+TGG - chr3_1:91991511-91991530 None:intergenic 40.0%
! CACTTGATAGTAGTCTGCAT+TGG - chr3_1:91991556-91991575 None:intergenic 40.0%
CAATGCAGACTACTATCAAG+TGG + chr3_1:91991554-91991573 Msa0387880:CDS 40.0%
TGAGTAGTAGCTTGACTGTT+TGG - chr3_1:91991588-91991607 None:intergenic 40.0%
AAACAGTCAAGCTACTACTC+AGG + chr3_1:91991587-91991606 Msa0387880:CDS 40.0%
AACAGTCAAGCTACTACTCA+GGG + chr3_1:91991588-91991607 Msa0387880:CDS 40.0%
AGCCTCTTCAAAGCTTTCAA+AGG + chr3_1:91991673-91991692 Msa0387880:CDS 40.0%
!! GTCCTTTGAAAGCTTTGAAG+AGG - chr3_1:91991678-91991697 None:intergenic 40.0%
ATTTGTGGGACTTGAGATCT+TGG - chr3_1:91991825-91991844 None:intergenic 40.0%
AAGATCTCAAGTCCCACAAA+TGG + chr3_1:91991824-91991843 Msa0387880:CDS 40.0%
AGATCTCAAGTCCCACAAAT+GGG + chr3_1:91991825-91991844 Msa0387880:CDS 40.0%
AGTTCCTCATACCCATTTGT+GGG - chr3_1:91991839-91991858 None:intergenic 40.0%
AAGTTCCTCATACCCATTTG+TGG - chr3_1:91991840-91991859 None:intergenic 40.0%
! TGGCCAAGTTTTGCATTTGA+GGG - chr3_1:91991872-91991891 None:intergenic 40.0%
GGATCATAAATTTGGTCTGC+AGG - chr3_1:91992011-91992030 None:intergenic 40.0%
GCAACAGATGTAGGTGAAAA+TGG - chr3_1:91992032-91992051 None:intergenic 40.0%
!! TTGGATGGAGGATTTTGGAG+GGG - chr3_1:91987815-91987834 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG - chr3_1:91987817-91987836 None:intergenic 45.0%
! CTAAGGGTATGTTTGGATGG+AGG - chr3_1:91987827-91987846 None:intergenic 45.0%
!! GAGAGCTTTTGGCTACTAGA+AGG - chr3_1:91988243-91988262 None:intergenic 45.0%
!!! CCCCATCTTTTTTAGCTCCT+CGG - chr3_1:91988335-91988354 None:intergenic 45.0%
CCGAGGAGCTAAAAAAGATG+GGG + chr3_1:91988332-91988351 Msa0387880:CDS 45.0%
CTGACAAATGCATCCTGTGT+CGG - chr3_1:91988423-91988442 None:intergenic 45.0%
ACAGGATGCATTTGTCAGGA+AGG + chr3_1:91988425-91988444 Msa0387880:CDS 45.0%
TGCATTTGTCAGGAAGGCTA+AGG + chr3_1:91988431-91988450 Msa0387880:CDS 45.0%
! TGTCAGGAAGGCTAAGGTTT+TGG + chr3_1:91988437-91988456 Msa0387880:CDS 45.0%
! TTGGCATTGCAGGTGTTTTC+TGG + chr3_1:91988456-91988475 Msa0387880:intron 45.0%
GGTCCACACGAATCTACAAA+AGG - chr3_1:91988632-91988651 None:intergenic 45.0%
AGACACTCAGAACTCAACGT+TGG + chr3_1:91988692-91988711 Msa0387880:CDS 45.0%
AACCCAGATGAAAGCAAGTC+TGG + chr3_1:91988723-91988742 Msa0387880:CDS 45.0%
! AGCCAGACTTGCTTTCATCT+GGG - chr3_1:91988728-91988747 None:intergenic 45.0%
! ATTATTAAGGGGTGTGGCCA+AGG + chr3_1:91989312-91989331 Msa0387880:intron 45.0%
CTATAAGGCCCACAAAACCT+TGG - chr3_1:91989332-91989351 None:intergenic 45.0%
CCTCACCGCCTAATATGTAT+TGG - chr3_1:91989404-91989423 None:intergenic 45.0%
CCAATACATATTAGGCGGTG+AGG + chr3_1:91989401-91989420 Msa0387880:intron 45.0%
!! TTCCTTGGCTGTTTTCGTGA+TGG + chr3_1:91989563-91989582 Msa0387880:CDS 45.0%
TTCCATCACGAAAACAGCCA+AGG - chr3_1:91989568-91989587 None:intergenic 45.0%
AGGTGATAATCAGAAGCGAC+TGG + chr3_1:91989969-91989988 Msa0387880:CDS 45.0%
TAATCAGAAGCGACTGGAGA+AGG + chr3_1:91989975-91989994 Msa0387880:CDS 45.0%
CATGGAACAAAAGCAGACAC+AGG + chr3_1:91990142-91990161 Msa0387880:CDS 45.0%
! TGCCTGGTTTAATTTCACCC+TGG - chr3_1:91990254-91990273 None:intergenic 45.0%
ATGTCAACTCACCGTTACAG+AGG - chr3_1:91990376-91990395 None:intergenic 45.0%
AGAAATTGCATGAGAAGGGG+TGG - chr3_1:91990617-91990636 None:intergenic 45.0%
AGCAAGGAGTTGTGGATTTG+GGG - chr3_1:91990779-91990798 None:intergenic 45.0%
CTAGCAAGGAGTTGTGGATT+TGG - chr3_1:91990781-91990800 None:intergenic 45.0%
GAAGGGCTCATTGTTTGTGA+TGG - chr3_1:91990817-91990836 None:intergenic 45.0%
AATGGGTGGAATCCAGAAAC+AGG - chr3_1:91990874-91990893 None:intergenic 45.0%
! TGTAAGATTTGTGTCGGTGG+TGG - chr3_1:91990928-91990947 None:intergenic 45.0%
TGCTGTAAGATTTGTGTCGG+TGG - chr3_1:91990931-91990950 None:intergenic 45.0%
TTAAGCCAACCAACACCAAC+TGG + chr3_1:91991069-91991088 Msa0387880:CDS 45.0%
ATATTGCCGTGAGGGGTTAA+TGG - chr3_1:91991168-91991187 None:intergenic 45.0%
ATTAACCCCTCACGGCAATA+TGG + chr3_1:91991167-91991186 Msa0387880:CDS 45.0%
TTAACCCCTCACGGCAATAT+GGG + chr3_1:91991168-91991187 Msa0387880:CDS 45.0%
GAATGAACAGTTCCTGGCAT+TGG - chr3_1:91991360-91991379 None:intergenic 45.0%
CCAGTTGAATGAACAGTTCC+TGG - chr3_1:91991366-91991385 None:intergenic 45.0%
CCAGGAACTGTTCATTCAAC+TGG + chr3_1:91991363-91991382 Msa0387880:CDS 45.0%
CTTGGCGAAGGAAATGAAAC+AGG - chr3_1:91991405-91991424 None:intergenic 45.0%
GATTGCTGAGCTAATGGAAG+TGG - chr3_1:91991438-91991457 None:intergenic 45.0%
CTTCCATTAGCTCAGCAATC+AGG + chr3_1:91991438-91991457 Msa0387880:CDS 45.0%
! TTTTACGTGGGCGTATTGAG+AGG - chr3_1:91991478-91991497 None:intergenic 45.0%
ATACGCCCACGTAAAACCAT+TGG + chr3_1:91991482-91991501 Msa0387880:CDS 45.0%
GTAGCTTGACTGTTTGGTCT+GGG - chr3_1:91991582-91991601 None:intergenic 45.0%
AGTAGCTTGACTGTTTGGTC+TGG - chr3_1:91991583-91991602 None:intergenic 45.0%
TCAGGCACAGCAAACCTAAA+TGG - chr3_1:91991651-91991670 None:intergenic 45.0%
!! AAGCTTTGAAGAGGCTGATC+AGG - chr3_1:91991669-91991688 None:intergenic 45.0%
! TATGGAAATGCAGGGTGTCT+GGG - chr3_1:91991786-91991805 None:intergenic 45.0%
! ATATGGAAATGCAGGGTGTC+TGG - chr3_1:91991787-91991806 None:intergenic 45.0%
GACCAGCATATGGAAATGCA+GGG - chr3_1:91991794-91991813 None:intergenic 45.0%
TGACCAGCATATGGAAATGC+AGG - chr3_1:91991795-91991814 None:intergenic 45.0%
AAGTCCCACAAATGGGTATG+AGG + chr3_1:91991832-91991851 Msa0387880:CDS 45.0%
! AAGTTTTGCATTTGAGGGGC+AGG - chr3_1:91991867-91991886 None:intergenic 45.0%
TGCCCCTCAAATGCAAAACT+TGG + chr3_1:91991866-91991885 Msa0387880:CDS 45.0%
! GGCCAAGTTTTGCATTTGAG+GGG - chr3_1:91991871-91991890 None:intergenic 45.0%
! CTGGCCAAGTTTTGCATTTG+AGG - chr3_1:91991873-91991892 None:intergenic 45.0%
TGCATACCTCTTTGGACATC+AGG - chr3_1:91991897-91991916 None:intergenic 45.0%
GTCGATTGTGCATACCTCTT+TGG - chr3_1:91991905-91991924 None:intergenic 45.0%
GTTTAGCAACAATCCCTCCT+TGG + chr3_1:91991965-91991984 Msa0387880:CDS 45.0%
TGAGCTACGTCAGACCACTA+CGG + chr3_1:91987261-91987280 Msa0387880:five_prime_UTR 50.0%
CCGATGAAGGAAGCAGAGAT+CGG - chr3_1:91987323-91987342 None:intergenic 50.0%
CCGATCTCTGCTTCCTTCAT+CGG + chr3_1:91987320-91987339 Msa0387880:five_prime_UTR 50.0%
!! GAGAGAGAGAGTACCGATGA+AGG - chr3_1:91987336-91987355 None:intergenic 50.0%
!! ATGGAGGATTTTGGAGGGGA+GGG - chr3_1:91987811-91987830 None:intergenic 50.0%
TCTGCACCACACAAGATGTC+TGG + chr3_1:91988201-91988220 Msa0387880:exon 50.0%
GTAGCTCCAGACATCTTGTG+TGG - chr3_1:91988210-91988229 None:intergenic 50.0%
AATGCATCCTGTGTCGGATC+AGG - chr3_1:91988417-91988436 None:intergenic 50.0%
CGACACAGGATGCATTTGTC+AGG + chr3_1:91988421-91988440 Msa0387880:CDS 50.0%
!! GGCTAAGGTTTTGGCATTGC+AGG + chr3_1:91988446-91988465 Msa0387880:CDS 50.0%
!! CGCATGAGTTCTGGTTTCCA+AGG + chr3_1:91988578-91988597 Msa0387880:intron 50.0%
CACTCAGAACTCAACGTTGG+TGG + chr3_1:91988695-91988714 Msa0387880:CDS 50.0%
! GAGCCAGACTTGCTTTCATC+TGG - chr3_1:91988729-91988748 None:intergenic 50.0%
CTCGAAAAGCGGGAAGCAAT+AGG + chr3_1:91988884-91988903 Msa0387880:CDS 50.0%
! GTGATGGAAAATGCTGTCGG+AGG + chr3_1:91989579-91989598 Msa0387880:CDS 50.0%
!! TGCATTTGTGTACTGGCTGC+AGG - chr3_1:91990670-91990689 None:intergenic 50.0%
GCAGCCAGTACACAAATGCA+AGG + chr3_1:91990670-91990689 Msa0387880:CDS 50.0%
GCAAGGAGTTGTGGATTTGG+GGG - chr3_1:91990778-91990797 None:intergenic 50.0%
! GAAAATGGGGTGCTCTAGCA+AGG - chr3_1:91990795-91990814 None:intergenic 50.0%
TGGAATCCAGAAACAGGTGG+AGG - chr3_1:91990868-91990887 None:intergenic 50.0%
!! GTTGTCCAGTTGGTGTTGGT+TGG - chr3_1:91991077-91991096 None:intergenic 50.0%
! TGGAGTTGTCCAGTTGGTGT+TGG - chr3_1:91991081-91991100 None:intergenic 50.0%
! GATGTCTGGAGTTGTCCAGT+TGG - chr3_1:91991087-91991106 None:intergenic 50.0%
GCGTTGAAGAGACTGATGTC+TGG - chr3_1:91991101-91991120 None:intergenic 50.0%
TCAACGCCTCAACCTTTGTC+TGG + chr3_1:91991114-91991133 Msa0387880:CDS 50.0%
GACGGCGATATACCAGACAA+AGG - chr3_1:91991129-91991148 None:intergenic 50.0%
! GGCTGGTTAGCTATTGGTGA+CGG - chr3_1:91991147-91991166 None:intergenic 50.0%
AACCAGCCATTAACCCCTCA+CGG + chr3_1:91991159-91991178 Msa0387880:CDS 50.0%
TAACCCCTCACGGCAATATG+GGG + chr3_1:91991169-91991188 Msa0387880:CDS 50.0%
! AGAGAAACGGGTCTTGTAGG+GGG - chr3_1:91991216-91991235 None:intergenic 50.0%
! GAGAGAAACGGGTCTTGTAG+GGG - chr3_1:91991217-91991236 None:intergenic 50.0%
! CGAGAGAAACGGGTCTTGTA+GGG - chr3_1:91991218-91991237 None:intergenic 50.0%
CCTACAAGACCCGTTTCTCT+CGG + chr3_1:91991216-91991235 Msa0387880:CDS 50.0%
TGGTTGTGGACCGAGAGAAA+CGG - chr3_1:91991229-91991248 None:intergenic 50.0%
AGCAACATATTTGGCTGGGG+TGG - chr3_1:91991267-91991286 None:intergenic 50.0%
!! ATGTTGCTGATTCCACGACC+TGG + chr3_1:91991279-91991298 Msa0387880:CDS 50.0%
GGATGAATACTACCAGGTCG+TGG - chr3_1:91991294-91991313 None:intergenic 50.0%
GGTGACATTCCTGCATGATG+TGG - chr3_1:91991315-91991334 None:intergenic 50.0%
ACCTAGACCACCATCGTCTT+TGG + chr3_1:91991332-91991351 Msa0387880:CDS 50.0%
CCTAGACCACCATCGTCTTT+GGG + chr3_1:91991333-91991352 Msa0387880:CDS 50.0%
ATTGGTCCCAAAGACGATGG+TGG - chr3_1:91991342-91991361 None:intergenic 50.0%
GGAAGTGGAGCGGATATTCT+TGG - chr3_1:91991423-91991442 None:intergenic 50.0%
CTGAGCTAATGGAAGTGGAG+CGG - chr3_1:91991433-91991452 None:intergenic 50.0%
GCGTATTGAGAGGCAGAAGT+AGG - chr3_1:91991468-91991487 None:intergenic 50.0%
!! GGAGGCCAATGGTTTTACGT+GGG - chr3_1:91991490-91991509 None:intergenic 50.0%
!! TGGAGGCCAATGGTTTTACG+TGG - chr3_1:91991491-91991510 None:intergenic 50.0%
! TTTGAAGGCATGGAGGCCAA+TGG - chr3_1:91991501-91991520 None:intergenic 50.0%
GGCCTCCATGCCTTCAAATT+CGG + chr3_1:91991503-91991522 Msa0387880:CDS 50.0%
GCCTCCATGCCTTCAAATTC+GGG + chr3_1:91991504-91991523 Msa0387880:CDS 50.0%
! TCCCGAATTTGAAGGCATGG+AGG - chr3_1:91991508-91991527 None:intergenic 50.0%
AGTCAAGCTACTACTCAGGG+TGG + chr3_1:91991591-91991610 Msa0387880:CDS 50.0%
GGCACAGCAAACCTAAATGG+CGG - chr3_1:91991648-91991667 None:intergenic 50.0%
TTCAGATGGATCCAGCTGGT+TGG - chr3_1:91991709-91991728 None:intergenic 50.0%
AAGCTTCAGATGGATCCAGC+TGG - chr3_1:91991713-91991732 None:intergenic 50.0%
GCAGAGACGTAAGCTTCAGA+TGG - chr3_1:91991723-91991742 None:intergenic 50.0%
! TACGTCTCTGCTGCTCCTTT+TGG + chr3_1:91991732-91991751 Msa0387880:CDS 50.0%
! ACGTCTCTGCTGCTCCTTTT+GGG + chr3_1:91991733-91991752 Msa0387880:CDS 50.0%
GAACCTGAACTTCCCCCAAA+AGG - chr3_1:91991750-91991769 None:intergenic 50.0%
CACCCTGCATTTCCATATGC+TGG + chr3_1:91991789-91991808 Msa0387880:CDS 50.0%
ACCTCTTTGGACATCAGGAC+TGG - chr3_1:91991892-91991911 None:intergenic 50.0%
TCGACAAAGCTATCCTGCTC+AGG + chr3_1:91991920-91991939 Msa0387880:CDS 50.0%
CGACAAAGCTATCCTGCTCA+GGG + chr3_1:91991921-91991940 Msa0387880:CDS 50.0%
ATTTGGTCTGCAGGATGTGC+TGG - chr3_1:91992002-91992021 None:intergenic 50.0%
! TGTGGAGGTGCAACAGATGT+AGG - chr3_1:91992041-91992060 None:intergenic 50.0%
!! TGGAGGATTTTGGAGGGGAG+GGG - chr3_1:91987810-91987829 None:intergenic 55.0%
!! GATGGAGGATTTTGGAGGGG+AGG - chr3_1:91987812-91987831 None:intergenic 55.0%
CCAGGTGGAGGCTTGTAACT+GGG - chr3_1:91989026-91989045 None:intergenic 55.0%
ACCAGGTGGAGGCTTGTAAC+TGG - chr3_1:91989027-91989046 None:intergenic 55.0%
!! GGGTGTGGCCAAGGTTTTGT+GGG + chr3_1:91989321-91989340 Msa0387880:intron 55.0%
! GCATCTCTTGGTAACCGCAC+TGG - chr3_1:91990284-91990303 None:intergenic 55.0%
!! ATTCAGGGGCATTCAGCTGC+TGG + chr3_1:91990529-91990548 Msa0387880:intron 55.0%
! CTGCAGGTTGAAACACAGCC+TGG - chr3_1:91990654-91990673 None:intergenic 55.0%
GGTGCTCTAGCAAGGAGTTG+TGG - chr3_1:91990787-91990806 None:intergenic 55.0%
GCTCAACCTCCACCTGTTTC+TGG + chr3_1:91990859-91990878 Msa0387880:CDS 55.0%
GGGTGGAATCCAGAAACAGG+TGG - chr3_1:91990871-91990890 None:intergenic 55.0%
GGTGGCCCAACTTGACCAAA+AGG - chr3_1:91990976-91990995 None:intergenic 55.0%
TCAGCCCCATATTGCCGTGA+GGG - chr3_1:91991176-91991195 None:intergenic 55.0%
ATCAGCCCCATATTGCCGTG+AGG - chr3_1:91991177-91991196 None:intergenic 55.0%
TCACGGCAATATGGGGCTGA+TGG + chr3_1:91991176-91991195 Msa0387880:CDS 55.0%
! CCGAGAGAAACGGGTCTTGT+AGG - chr3_1:91991219-91991238 None:intergenic 55.0%
GGTTGTGGACCGAGAGAAAC+GGG - chr3_1:91991228-91991247 None:intergenic 55.0%
! CCCAAAGACGATGGTGGTCT+AGG - chr3_1:91991336-91991355 None:intergenic 55.0%
!! GGCATTGGTCCCAAAGACGA+TGG - chr3_1:91991345-91991364 None:intergenic 55.0%
!! TCGTCTTTGGGACCAATGCC+AGG + chr3_1:91991345-91991364 Msa0387880:CDS 55.0%
GGAGCGGATATTCTTGGCGA+AGG - chr3_1:91991417-91991436 None:intergenic 55.0%
ATTGGGCCGCTGTCCTTGAA+AGG - chr3_1:91991538-91991557 None:intergenic 55.0%
GACACAAGTCTCCAACCAGC+TGG + chr3_1:91991695-91991714 Msa0387880:CDS 55.0%
! CGTCTCTGCTGCTCCTTTTG+GGG + chr3_1:91991734-91991753 Msa0387880:CDS 55.0%
! GTCTCTGCTGCTCCTTTTGG+GGG + chr3_1:91991735-91991754 Msa0387880:CDS 55.0%
!! GCTCCTTTTGGGGGAAGTTC+AGG + chr3_1:91991744-91991763 Msa0387880:CDS 55.0%
! GGTGCAGGTTGACCAGCATA+TGG - chr3_1:91991804-91991823 None:intergenic 55.0%
! GGGACTTGAGATCTTGGTGC+AGG - chr3_1:91991819-91991838 None:intergenic 55.0%
GCCAGTCCTGATGTCCAAAG+AGG + chr3_1:91991888-91991907 Msa0387880:CDS 55.0%
AACAATCCCTCCTTGGCGTC+CGG + chr3_1:91991972-91991991 Msa0387880:CDS 55.0%
!! TGCAGGATGTGCTGGCTTAC+CGG - chr3_1:91991994-91992013 None:intergenic 55.0%
! GGATTACCTTTCGGGTGTGG+AGG - chr3_1:91992056-91992075 None:intergenic 55.0%
! CCAGGATTACCTTTCGGGTG+TGG - chr3_1:91992059-91992078 None:intergenic 55.0%
CCACACCCGAAAGGTAATCC+TGG + chr3_1:91992056-91992075 Msa0387880:CDS 55.0%
GCTACGTCAGACCACTACGG+TGG + chr3_1:91987264-91987283 Msa0387880:five_prime_UTR 60.0%
!! GGATTTTGGAGGGGAGGGGA+GGG - chr3_1:91987806-91987825 None:intergenic 60.0%
!! AGGATTTTGGAGGGGAGGGG+AGG - chr3_1:91987807-91987826 None:intergenic 60.0%
ATGGGGACCTGATCCGACAC+AGG + chr3_1:91988407-91988426 Msa0387880:CDS 60.0%
CCCAGTTACAAGCCTCCACC+TGG + chr3_1:91989023-91989042 Msa0387880:CDS 60.0%
! GGGGTGTGGCCAAGGTTTTG+TGG + chr3_1:91989320-91989339 Msa0387880:intron 60.0%
!! CCAGGCACTGATGTCCAGTG+CGG + chr3_1:91990267-91990286 Msa0387880:CDS 60.0%
TGCCGTGAGGGGTTAATGGC+TGG - chr3_1:91991164-91991183 None:intergenic 60.0%
CAGCCCCATATTGCCGTGAG+GGG - chr3_1:91991175-91991194 None:intergenic 60.0%
TATGGGGCTGATGGCTCCAC+CGG + chr3_1:91991185-91991204 Msa0387880:CDS 60.0%
! GGTCTTGTAGGGGGAACTGC+CGG - chr3_1:91991207-91991226 None:intergenic 60.0%
GGTACACAAGAGCCGCCTTC+TGG + chr3_1:91991612-91991631 Msa0387880:CDS 60.0%
AACCTAAATGGCGGCGTGCG+CGG - chr3_1:91991639-91991658 None:intergenic 60.0%
! GGAAATGCAGGGTGTCTGGG+TGG - chr3_1:91991783-91991802 None:intergenic 60.0%
GCTATCCTGCTCAGGGAGCA+TGG + chr3_1:91991928-91991947 Msa0387880:CDS 60.0%
GTTGCACCTCCACACCCGAA+AGG + chr3_1:91992047-91992066 Msa0387880:CDS 60.0%
AGTGCGCGTAGCCACCGTAG+TGG - chr3_1:91987278-91987297 None:intergenic 65.0%
CCGCACTGGACATCAGTGCC+TGG - chr3_1:91990270-91990289 None:intergenic 65.0%
CTTGTAGGGGGAACTGCCGG+TGG - chr3_1:91991204-91991223 None:intergenic 65.0%
AGAGGCCATGCTCCCTGAGC+AGG - chr3_1:91991936-91991955 None:intergenic 65.0%
GGCTTACCGGACGCCAAGGA+GGG - chr3_1:91991981-91992000 None:intergenic 65.0%
TGGCTTACCGGACGCCAAGG+AGG - chr3_1:91991982-91992001 None:intergenic 65.0%
!! TGCTGGCTTACCGGACGCCA+AGG - chr3_1:91991985-91992004 None:intergenic 65.0%
GTCCGCGCACGCCGCCATTT+AGG + chr3_1:91991634-91991653 Msa0387880:CDS 70.0%
GGCGTGCGCGGACCAGAAGG+CGG - chr3_1:91991627-91991646 None:intergenic 75.0%
! GGCGGCGTGCGCGGACCAGA+AGG - chr3_1:91991630-91991649 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 91987237 91992451 91987237 ID=Msa0387880;Name=Msa0387880
chr3_1 mRNA 91987237 91992451 91987237 ID=Msa0387880-mRNA-1;Parent=Msa0387880;Name=Msa0387880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=165|0.88|0.9|1|0.88|0.8|10|366|805
chr3_1 exon 91987237 91987341 91987237 ID=Msa0387880-mRNA-1:exon:25789;Parent=Msa0387880-mRNA-1
chr3_1 exon 91988156 91988467 91988156 ID=Msa0387880-mRNA-1:exon:25790;Parent=Msa0387880-mRNA-1
chr3_1 exon 91988639 91988764 91988639 ID=Msa0387880-mRNA-1:exon:25791;Parent=Msa0387880-mRNA-1
chr3_1 exon 91988866 91988905 91988866 ID=Msa0387880-mRNA-1:exon:25792;Parent=Msa0387880-mRNA-1
chr3_1 exon 91989003 91989085 91989003 ID=Msa0387880-mRNA-1:exon:25793;Parent=Msa0387880-mRNA-1
chr3_1 exon 91989543 91989647 91989543 ID=Msa0387880-mRNA-1:exon:25794;Parent=Msa0387880-mRNA-1
chr3_1 exon 91989919 91989996 91989919 ID=Msa0387880-mRNA-1:exon:25795;Parent=Msa0387880-mRNA-1
chr3_1 exon 91990118 91990171 91990118 ID=Msa0387880-mRNA-1:exon:25796;Parent=Msa0387880-mRNA-1
chr3_1 exon 91990255 91990383 91990255 ID=Msa0387880-mRNA-1:exon:25797;Parent=Msa0387880-mRNA-1
chr3_1 exon 91990535 91992451 91990535 ID=Msa0387880-mRNA-1:exon:25798;Parent=Msa0387880-mRNA-1
chr3_1 five_prime_UTR 91987237 91987341 91987237 ID=Msa0387880-mRNA-1:five_prime_utr;Parent=Msa0387880-mRNA-1
chr3_1 five_prime_UTR 91988156 91988215 91988156 ID=Msa0387880-mRNA-1:five_prime_utr;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91988216 91988467 91988216 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91988639 91988764 91988639 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91988866 91988905 91988866 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91989003 91989085 91989003 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91989543 91989647 91989543 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91989919 91989996 91989919 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91990118 91990171 91990118 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91990255 91990383 91990255 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 CDS 91990535 91992085 91990535 ID=Msa0387880-mRNA-1:cds;Parent=Msa0387880-mRNA-1
chr3_1 three_prime_UTR 91992086 91992451 91992086 ID=Msa0387880-mRNA-1:three_prime_utr;Parent=Msa0387880-mRNA-1
Gene Sequence

>Msa0387880

ATGTCTGGAGCTACATCTACAACACCTTCTAGTAGCCAAAAGCTCTCTAAATTTGGTGCCAAATCTGGATTTGTTATCCCCAAAAACAAGTTATTAGGATCATTAGTCCCTATTATCCGAGGAGCTAAAAAAGATGGGGTTACTGGAGTTGTCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCAAGATGGGGACCTGATCCGACACAGGATGCATTTGTCAGGAAGGCTAAGGTTTTGGCATTGCAGATTCGTGTGGACCAAATTTCAAAGTTGTTGGAATCAGAAAATCCAGAGATTAGAGACACTCAGAACTCAACGTTGGTGGATGAGAACCCAGATGAAAGCAAGTCTGGCTCTCAAATTAATAGCAAGAAGTCAGAAATGCTAGAACTCGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAATGTTCCTTTGCCTAAATGTTCTTCTCATCCATTTTCCTTGGCTGTTTTCGTGATGGAAAATGCTGTCGGAGGTCCTCATATTCTTGAAAGAATGTTGAAAACTAAGTTGCAGTATAAGGTCCAAGAATATCCTGGGTACAAATTTGTTGGTCTTATTTATGGGACTGAAGGTGATAATCAGAAGCGACTGGAGAAGGAAACTGGTACCAAGATAAAAATTCATGGAACAAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGCACTGATGTCCAGTGCGGTTACCAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACGGGGCATTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCTGGAGACACAACTAATGTTTTGAATCAAAACGAAGACACCACCCCTTCTCATGCAATTTCTCTTTCTCTTGAAAACCAGGCTGTGTTTCAACCTGCAGCCAGTACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCACCCTTACCATCTCATACCCCTTTATTTGCTTCTTCTGGCAGTGTAGTTCCCCCAAATCCACAACTCCTTGCTAGAGCACCCCATTTTCCATCACAAACAATGAGCCCTTCAAGTCTGATTTCAGCTTTTGGTGCTCAACCTCCACCTGTTTCTGGATTCCACCCATTTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAAATCTTACAGCACTCACAATGGCCTCAAACAAATCCTTTTGGTCAAGTTGGGCCACCAAGAAATCCTTCTGTAATAAGTGCACATAATTTGTCAGCACCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTAAGCCAACCAACACCAACTGGACAACTCCAGACATCAGTCTCTTCAACGCCTCAACCTTTGTCTGGTATATCGCCGTCACCAATAGCTAACCAGCCATTAACCCCTCACGGCAATATGGGGCTGATGGCTCCACCGGCAGTTCCCCCTACAAGACCCGTTTCTCTCGGTCCACAACCAGATGTTGAATATAAGCCACCCCAGCCAAATATGTTGCTGATTCCACGACCTGGTAGTATTCATCCACATCATGCAGGAATGTCACCTAGACCACCATCGTCTTTGGGACCAATGCCAGGAACTGTTCATTCAACTGGAAACCATTTATTAGGACCTGTTTCATTTCCTTCGCCAAGAATATCCGCTCCACTTCCATTAGCTCAGCAATCAGGAATACCTACTTCTGCCTCTCAATACGCCCACGTAAAACCATTGGCCTCCATGCCTTCAAATTCGGGAAATTTTACCTTTCAAGGACAGCGGCCCAATGCAGACTACTATCAAGTGGTTCCCAGACCAAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCGCCTTCTGGTCCGCGCACGCCGCCATTTAGGTTTGCTGTGCCTGATCAGCCTCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCAGCTGGATCCATCTGAAGCTTACGTCTCTGCTGCTCCTTTTGGGGGAAGTTCAGGTTCTGTCTCATTTCCACCCAGACACCCTGCATTTCCATATGCTGGTCAACCTGCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTGCCCCTCAAATGCAAAACTTGGCCAGTCCTGATGTCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAGCATGGCCTCTGAATCAGAAGTTTAGCAACAATCCCTCCTTGGCGTCCGGTAAGCCAGCACATCCTGCAGACCAAATTTATGATCCATTTTCACCTACATCTGTTGCACCTCCACACCCGAAAGGTAATCCTGGAAAATGA
Protein sequence

>Msa0387880

MSGATSTTPSSSQKLSKFGAKSGFVIPKNKLLGSLVPIIRGAKKDGVTGVVNEESSKQIERKSRWGPDPTQDAFVRKAKVLALQIRVDQISKLLESENPEIRDTQNSTLVDENPDESKSGSQINSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPKCSSHPFSLAVFVMENAVGGPHILERMLKTKLQYKVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQEMHVNISADSFDKVDAAISIIELLISSVTGHSAAGSTPSVSVSGDTTNVLNQNEDTTPSHAISLSLENQAVFQPAASTQMQGDHFQYSGSWFSPLPSHTPLFASSGSVVPPNPQLLARAPHFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQVGPPRNPSVISAHNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQPLTPHGNMGLMAPPAVPPTRPVSLGPQPDVEYKPPQPNMLLIPRPGSIHPHHAGMSPRPPSSLGPMPGTVHSTGNHLLGPVSFPSPRISAPLPLAQQSGIPTSASQYAHVKPLASMPSNSGNFTFQGQRPNADYYQVVPRPNSQATTQGGTQEPPSGPRTPPFRFAVPDQPLQSFQRTQVSNQLDPSEAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPAPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHPADQIYDPFSPTSVAPPHPKGNPGK*