AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467260 MtrunA17_Chr3g0121391 92.628 624 27 1 111 715 181 804 0.0 1123
Msa0467260 MtrunA17_Chr4g0018581 38.739 111 48 3 96 198 210 308 6.73e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467260 AT3G32940.1 33.889 180 100 5 41 206 61 235 1.29e-24 109
Msa0467260 AT5G51300.1 34.234 111 53 3 96 198 237 335 3.64e-11 67.0
Msa0467260 AT5G51300.2 34.234 111 53 3 96 198 237 335 3.64e-11 67.0
Msa0467260 AT5G51300.3 34.234 111 53 3 96 198 237 335 3.64e-11 67.0

Find 273 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCAACCTCCACCTGTTTC+TGG 0.078271 3_3:-68463995 Msa0467260:CDS
AAATTTGTTGGTCTTATTTA+TGG 0.107351 3_3:-68464914 Msa0467260:CDS
AAACTACTGATGTTTATTTA+TGG 0.135102 3_3:-68466018 Msa0467260:CDS
AACTGCTGATTTGGAATAAA+TGG 0.142855 3_3:+68463965 None:intergenic
TCATTGTTTGTGATGGAAAA+TGG 0.154644 3_3:+68464047 None:intergenic
GTGAAAATATGATTATATTT+TGG 0.173420 3_3:+68462507 None:intergenic
TCAACTGGAAACCATTTATT+AGG 0.187606 3_3:-68463476 Msa0467260:CDS
ACACCTTCTGTATCTGTTTC+TGG 0.192170 3_3:-68464298 Msa0467260:CDS
ATTCCAACAACTTTGAAATT+TGG 0.216962 3_3:+68466204 None:intergenic
ACCCCTTTATTTGCTTCTTC+TGG 0.217183 3_3:-68464112 Msa0467260:CDS
TCTAAATTTGGTGCCAAATC+TGG 0.242872 3_3:-68466593 Msa0467260:five_prime_UTR
AAAGAAAGGTTGGTTTAAAA+AGG 0.246602 3_3:+68462619 None:intergenic
TACGTCTCTGCTGCTCCTTT+TGG 0.246885 3_3:-68463122 Msa0467260:CDS
GGCCTCCATGCCTTCAAATT+CGG 0.255606 3_3:-68463351 Msa0467260:CDS
CACCAAATTTAGAGAGCTTT+TGG 0.259191 3_3:+68466603 None:intergenic
TCAAGTCTGATTTCAGCTTT+TGG 0.264980 3_3:-68464019 Msa0467260:CDS
GTCCGCGCACGCCGCCATTT+AGG 0.269653 3_3:-68463220 Msa0467260:CDS
ATTAACCCCTCACGGCAATA+TGG 0.272987 3_3:-68463687 Msa0467260:CDS
TAGCAAGGAGTTGTGGATTT+GGG 0.273271 3_3:+68464077 None:intergenic
TGCATAGAAAACTGCTGATT+TGG 0.275514 3_3:+68463956 None:intergenic
AGCCAAAAGCTCTCTAAATT+TGG 0.276842 3_3:-68466605 Msa0467260:five_prime_UTR
CTAGCAAGGAGTTGTGGATT+TGG 0.279373 3_3:+68464076 None:intergenic
CTTATTACAGAAGGATTTCT+TGG 0.280524 3_3:+68463860 None:intergenic
ATGAAACAGGTCCTAATAAA+TGG 0.288884 3_3:+68463465 None:intergenic
ATATGCAGTACCATCTTTAC+AGG 0.289181 3_3:-68464957 Msa0467260:CDS
GCCTCCATGCCTTCAAATTC+GGG 0.291164 3_3:-68463350 Msa0467260:CDS
CCAGTTGAATGAACAGTTCC+TGG 0.292551 3_3:+68463491 None:intergenic
TAAACCATGTAATATTCTTT+AGG 0.293815 3_3:-68462478 Msa0467260:three_prime_UTR
ACGAAAACAGCCAAGGAAAA+TGG 0.294817 3_3:+68465296 None:intergenic
ACCTAGACCACCATCGTCTT+TGG 0.295110 3_3:-68463522 Msa0467260:CDS
AATTTGTTGGTCTTATTTAT+GGG 0.300271 3_3:-68464913 Msa0467260:CDS
GCAACAGATGTAGGTGAAAA+TGG 0.302046 3_3:+68462825 None:intergenic
CGTGGAATCAGCAACATATT+TGG 0.304574 3_3:+68463581 None:intergenic
TGTCAGGAAGGCTAAGGTTT+TGG 0.306598 3_3:-68466417 Msa0467260:five_prime_UTR
TGAATTTACACTCGATGTTT+TGG 0.310389 3_3:-68462434 Msa0467260:three_prime_UTR
TGCAGGATGTGCTGGCTTAC+CGG 0.312647 3_3:+68462863 None:intergenic
GTCGATTGTGCATACCTCTT+TGG 0.316372 3_3:+68462952 None:intergenic
ATTTGTACCCAGGATATTCT+TGG 0.322150 3_3:+68464933 None:intergenic
GAAAATGAGGGAATTGAATA+TGG 0.331793 3_3:-68462776 Msa0467260:exon
ACCAGGTGGAGGCTTGTAAC+TGG 0.338773 3_3:+68465830 None:intergenic
ACTTTCAATACTCTGGTTCA+TGG 0.339329 3_3:-68464156 Msa0467260:CDS
GGGGATAACAAATCCAGATT+TGG 0.341770 3_3:+68466580 None:intergenic
TGAGTAGTAGCTTGACTGTT+TGG 0.351937 3_3:+68463269 None:intergenic
TAATTTCATAGATTAGTAAT+AGG 0.352142 3_3:-68462711 Msa0467260:three_prime_UTR
GTGAAAATGGATCATAAATT+TGG 0.358289 3_3:+68462838 None:intergenic
TGCATTTGTGTACTGGCTGC+AGG 0.363665 3_3:+68464187 None:intergenic
GAAAACTAAGTTGCAGTATA+AGG 0.368463 3_3:-68465228 Msa0467260:intron
GGACCAAATTTCAAAGTTGT+TGG 0.374888 3_3:-68466207 Msa0467260:five_prime_UTR
CTGCCAGAAGAAGCAAATAA+AGG 0.376448 3_3:+68464109 None:intergenic
TTATTTCTAAGCAGAAAGTT+TGG 0.379477 3_3:-68462670 Msa0467260:three_prime_UTR
CCAGGAACTGTTCATTCAAC+TGG 0.379863 3_3:-68463491 Msa0467260:CDS
ATATTGCCGTGAGGGGTTAA+TGG 0.379988 3_3:+68463689 None:intergenic
CCGAGAGAAACGGGTCTTGT+AGG 0.385484 3_3:+68463638 None:intergenic
ATTCCTGATTGCTGAGCTAA+TGG 0.386076 3_3:+68463413 None:intergenic
TGCCAGAAGAAGCAAATAAA+GGG 0.395738 3_3:+68464110 None:intergenic
ATTCAGGGGCATTCAGCTGC+TGG 0.396459 3_3:-68464325 Msa0467260:intron
TGGCCTCAAACAAATCCTTT+TGG 0.396828 3_3:-68463896 Msa0467260:CDS
GTTGGTTGGCTTAAAGAAAC+TGG 0.397405 3_3:+68463794 None:intergenic
TTAAGCCAACCAACACCAAC+TGG 0.398326 3_3:-68463785 Msa0467260:CDS
TTAACCCCTCACGGCAATAT+GGG 0.399508 3_3:-68463686 Msa0467260:CDS
ATCTCCTTGCATTTGTGTAC+TGG 0.400307 3_3:+68464180 None:intergenic
CATTGTTTGTGATGGAAAAT+GGG 0.401368 3_3:+68464048 None:intergenic
AAGCTTTGAAGAGGCTGATC+AGG 0.402278 3_3:+68463188 None:intergenic
AACATTCTTTCAAGAATATG+AGG 0.402387 3_3:+68465251 None:intergenic
TTCTGAGTGTCTCTAATCTC+TGG 0.413004 3_3:+68466173 None:intergenic
TCAGGCACAGCAAACCTAAA+TGG 0.414543 3_3:+68463206 None:intergenic
GGAAGTGGAGCGGATATTCT+TGG 0.414768 3_3:+68463434 None:intergenic
GGTACACAAGAGCCACCTTT+TGG 0.417527 3_3:-68463242 Msa0467260:CDS
ATATGGAAATGCAGGGTGTC+TGG 0.421915 3_3:+68463070 None:intergenic
CTCGAAAAGCGGGAAGCAAT+AGG 0.424171 3_3:-68465970 Msa0467260:intron
GGTGGCTTATATTCAACATC+TGG 0.425251 3_3:+68463608 None:intergenic
TGCATACCTCTTTGGACATC+AGG 0.425484 3_3:+68462960 None:intergenic
ATATACATTTATCAGGAAAC+TGG 0.426195 3_3:-68464751 Msa0467260:intron
AAAGCTGAAATCAGACTTGA+AGG 0.427089 3_3:+68464022 None:intergenic
AGTAGCTTGACTGTTTGGTC+TGG 0.429015 3_3:+68463274 None:intergenic
CCGATCTCTGCTTCCTTCAT+CGG 0.429253 3_3:-68467538 Msa0467260:intron
ATTTGTGGGACTTGAGATCT+TGG 0.429834 3_3:+68463032 None:intergenic
CCTAGACCACCATCGTCTTT+GGG 0.430690 3_3:-68463521 Msa0467260:CDS
ATTTGGTCTGCAGGATGTGC+TGG 0.431219 3_3:+68462855 None:intergenic
CGAGAGAAACGGGTCTTGTA+GGG 0.433708 3_3:+68463639 None:intergenic
GTTAATGGCTGGTTAGCTAT+TGG 0.434006 3_3:+68463704 None:intergenic
AAAGAGAAATTGCATGAGAA+GGG 0.436106 3_3:+68464236 None:intergenic
AACCCAGATAAAAGCAAGTC+TGG 0.436335 3_3:-68466131 Msa0467260:five_prime_UTR
TGCCCCTCAAATGCAAAACT+TGG 0.437679 3_3:-68462988 Msa0467260:CDS
GTAAAATTTCCCGAATTTGA+AGG 0.438768 3_3:+68463341 None:intergenic
CTTCCATTAGCTCAGCAATC+AGG 0.444772 3_3:-68463416 Msa0467260:CDS
GAAAGAGAAATTGCATGAGA+AGG 0.446350 3_3:+68464235 None:intergenic
TCGACAAAGCTATCCTGCTC+AGG 0.450978 3_3:-68462934 Msa0467260:CDS
TAAAGGGGTATGAGATGGTA+AGG 0.453984 3_3:+68464126 None:intergenic
TATCCTGGGTACAAATTTGT+TGG 0.457043 3_3:-68464926 Msa0467260:CDS
GGATCATAAATTTGGTCTGC+AGG 0.458027 3_3:+68462846 None:intergenic
TCAACGCCTCAACCTTTGTC+TGG 0.458854 3_3:-68463740 Msa0467260:CDS
AACAATCCCTCCTTGGCGTC+CGG 0.461178 3_3:-68462882 Msa0467260:CDS
TTCTCTTTCTCTTGAAAACC+AGG 0.463182 3_3:-68464221 Msa0467260:CDS
AATGCATCCTGTGTCGGATC+AGG 0.465476 3_3:+68466440 None:intergenic
CCAGGATTACCTTTCGGGTG+TGG 0.466921 3_3:+68462798 None:intergenic
GGAAATTAGTAGTTCAATGA+TGG 0.468823 3_3:+68464502 None:intergenic
CCCATCAGTGATGATTGATT+AGG 0.470157 3_3:-68462587 Msa0467260:three_prime_UTR
GGTTGTGGACCGAGAGAAAC+GGG 0.471798 3_3:+68463629 None:intergenic
GAATCAGCAACATATTTGGC+TGG 0.473232 3_3:+68463585 None:intergenic
GGCGGCGTGCGCGGACCAAA+AGG 0.474482 3_3:+68463227 None:intergenic
CTTGGCGAAGGAAATGAAAC+AGG 0.476112 3_3:+68463452 None:intergenic
AATGAAAGTGAAGCATTTGT+TGG 0.476455 3_3:+68463818 None:intergenic
TGCCGTGAGGGGTTAATGGC+TGG 0.476961 3_3:+68463693 None:intergenic
AAGATCTCAAGTCCCACAAA+TGG 0.477988 3_3:-68463030 Msa0467260:CDS
TATGGGGCTGATGGCTCCAC+CGG 0.478931 3_3:-68463669 Msa0467260:CDS
AATGGGTGGAATCCAGAAAC+AGG 0.480800 3_3:+68463983 None:intergenic
ATTTCCCGAATTTGAAGGCA+TGG 0.481988 3_3:+68463346 None:intergenic
TCTGCACCACACAAGATGTC+TGG 0.482394 3_3:-68466653 Msa0467260:five_prime_UTR
TGACCAGCATATGGAAATGC+AGG 0.484597 3_3:+68463062 None:intergenic
CCCAAAGACGATGGTGGTCT+AGG 0.486702 3_3:+68463521 None:intergenic
TGAGAAGTTATTGGAGGGAG+AGG 0.486959 3_3:-68467636 None:intergenic
GTAGCTTGACTGTTTGGTCT+GGG 0.488055 3_3:+68463275 None:intergenic
AGAGGCCATGCTCCCTGAGC+AGG 0.492143 3_3:+68462921 None:intergenic
GGTGGCCCAACTTGACCAAA+AGG 0.492353 3_3:+68463881 None:intergenic
AAACAGTCAAGCTACTACTC+AGG 0.493193 3_3:-68463267 Msa0467260:CDS
CACCCTGCATTTCCATATGC+TGG 0.496063 3_3:-68463065 Msa0467260:CDS
GGTGCAGGTTGACCAGCATA+TGG 0.497213 3_3:+68463053 None:intergenic
CGACACAGGATGCATTTGTC+AGG 0.498014 3_3:-68466433 Msa0467260:five_prime_UTR
GTTGTCCAGTTGGTGTTGGT+TGG 0.498904 3_3:+68463780 None:intergenic
TGACCAAAAGGATTTGTTTG+AGG 0.501608 3_3:+68463893 None:intergenic
AAGTTCCTCATACCCATTTG+TGG 0.502789 3_3:+68463017 None:intergenic
TTACAGGTCCAAGAATATCC+TGG 0.502819 3_3:-68464941 Msa0467260:CDS
TCCTAATCAATCATCACTGA+TGG 0.503064 3_3:+68462586 None:intergenic
TGGAGTTGTCCAGTTGGTGT+TGG 0.507043 3_3:+68463776 None:intergenic
CCCAGTTACAAGCCTCCACC+TGG 0.509104 3_3:-68465831 Msa0467260:CDS
GGGACTTGAGATCTTGGTGC+AGG 0.510647 3_3:+68463038 None:intergenic
ACTTGATAGTAGTCTGCATT+GGG 0.511196 3_3:+68463302 None:intergenic
AAGTCCCACAAATGGGTATG+AGG 0.511470 3_3:-68463022 Msa0467260:CDS
TCACGGCAATATGGGGCTGA+TGG 0.513585 3_3:-68463678 Msa0467260:CDS
CACTTGATAGTAGTCTGCAT+TGG 0.513755 3_3:+68463301 None:intergenic
AGTTCCTCATACCCATTTGT+GGG 0.517946 3_3:+68463018 None:intergenic
GGAGATCACTTTCAATACTC+TGG 0.518595 3_3:-68464163 Msa0467260:CDS
GATTGCTGAGCTAATGGAAG+TGG 0.519966 3_3:+68463419 None:intergenic
CACTCAGAACTCAACGTTGG+TGG 0.520133 3_3:-68466159 Msa0467260:five_prime_UTR
ACTGCTGATTTGGAATAAAT+GGG 0.521311 3_3:+68463966 None:intergenic
ATATGTTGACATGCATCTCT+TGG 0.521419 3_3:+68464561 None:intergenic
TAATCAGAAGCGACTGGAGA+AGG 0.523062 3_3:-68464879 Msa0467260:intron
GGAATACAGTAAGTCATCAA+AGG 0.524589 3_3:+68462640 None:intergenic
GAGAGAGAGAGTACCGATGA+AGG 0.525455 3_3:+68467525 None:intergenic
CCACACCCGAAAGGTAATCC+TGG 0.525917 3_3:-68462798 Msa0467260:CDS
GCGTTGAAGAGACTGATGTC+TGG 0.527033 3_3:+68463756 None:intergenic
AAATTGAGAGGAAATCAAGA+TGG 0.527290 3_3:-68466466 Msa0467260:five_prime_UTR
TCAGCCCCATATTGCCGTGA+GGG 0.531656 3_3:+68463681 None:intergenic
CTGCAGGTTGAAACACAGCC+TGG 0.532102 3_3:+68464203 None:intergenic
GAATACAGTAAGTCATCAAA+GGG 0.532760 3_3:+68462641 None:intergenic
TATGGAAATGCAGGGTGTCT+GGG 0.533513 3_3:+68463071 None:intergenic
AATTGAGAGGAAATCAAGAT+GGG 0.534663 3_3:-68466465 Msa0467260:five_prime_UTR
GAATGAACAGTTCCTGGCAT+TGG 0.534901 3_3:+68463497 None:intergenic
AGCCTCTTCAAAGCTTTCAA+AGG 0.535341 3_3:-68463181 Msa0467260:CDS
AAAGGTAATCCTGGAAAATG+AGG 0.535442 3_3:-68462789 Msa0467260:exon
GTTTAGCAACAATCCCTCCT+TGG 0.535610 3_3:-68462889 Msa0467260:CDS
TGCATTTGTCAGGAAGGCTA+AGG 0.536700 3_3:-68466423 Msa0467260:five_prime_UTR
GAACCAATACTTACAGGCAA+AGG 0.537584 3_3:+68465777 None:intergenic
TGCTGGCTTACCGGACGCCA+AGG 0.537749 3_3:+68462872 None:intergenic
TCGTCTTTGGGACCAATGCC+AGG 0.538288 3_3:-68463509 Msa0467260:CDS
GCATCTCTTGGTAACCGCAC+TGG 0.538752 3_3:+68464573 None:intergenic
AGATCTCAAGTCCCACAAAT+GGG 0.542336 3_3:-68463029 Msa0467260:CDS
GCTATCCTGCTCAGGGAGCA+TGG 0.543642 3_3:-68462926 Msa0467260:CDS
AATCAGCAACATATTTGGCT+GGG 0.544073 3_3:+68463586 None:intergenic
CCTACAAGACCCGTTTCTCT+CGG 0.545468 3_3:-68463638 Msa0467260:CDS
AGCAACATATTTGGCTGGGG+TGG 0.546173 3_3:+68463590 None:intergenic
GACACAAGTCTCCAACCAGC+TGG 0.547951 3_3:-68463159 Msa0467260:CDS
AGCAAGGAGTTGTGGATTTG+GGG 0.548336 3_3:+68464078 None:intergenic
TTGCTAAACTTCTGATTCAG+AGG 0.548374 3_3:+68462903 None:intergenic
GGCTTACCGGACGCCAAGGA+GGG 0.550715 3_3:+68462876 None:intergenic
ATTACAGAAGGATTTCTTGG+TGG 0.551389 3_3:+68463863 None:intergenic
GCAAATAAAGGGGTATGAGA+TGG 0.551801 3_3:+68464121 None:intergenic
GTCCTTTGAAAGCTTTGAAG+AGG 0.552634 3_3:+68463179 None:intergenic
AATGCTAGAACTCGAAAAGC+GGG 0.554196 3_3:-68465980 Msa0467260:CDS
AACCTAAATGGCGGCGTGCG+CGG 0.558256 3_3:+68463218 None:intergenic
TATTCTTGGACCTGTAAAGA+TGG 0.558367 3_3:+68464947 None:intergenic
TTCCAGGGTGAAATTAAACC+AGG 0.558811 3_3:-68464605 Msa0467260:intron
ACACTGACAAATACGAAATG+AGG 0.559712 3_3:-68462740 Msa0467260:three_prime_UTR
CTGACAAATGCATCCTGTGT+CGG 0.560067 3_3:+68466434 None:intergenic
AGGTGATAATCAGAAGCGAC+TGG 0.560138 3_3:-68464885 Msa0467260:CDS
TTTAACAATGGTTTAAAACC+AGG 0.560425 3_3:+68465813 None:intergenic
GGTCTTATTTATGGGACTGA+AGG 0.561574 3_3:-68464905 Msa0467260:CDS
CCAGGTGGAGGCTTGTAACT+GGG 0.561595 3_3:+68465831 None:intergenic
TTATATTCAACATCTGGTTG+TGG 0.562195 3_3:+68463614 None:intergenic
TTATGTGCACTTATTACAGA+AGG 0.562966 3_3:+68463851 None:intergenic
TGGTTGTGGACCGAGAGAAA+CGG 0.564956 3_3:+68463628 None:intergenic
TTTGAAGGCATGGAGGCCAA+TGG 0.565210 3_3:+68463356 None:intergenic
TACAGGTCCAAGAATATCCT+GGG 0.566528 3_3:-68464940 Msa0467260:CDS
GCAGAGACGTAAGCTTCAGA+TGG 0.570381 3_3:+68463134 None:intergenic
ACCTCTTTGGACATCAGGAC+TGG 0.571413 3_3:+68462965 None:intergenic
ATATCCTAAAGAATATTACA+TGG 0.574779 3_3:+68462474 None:intergenic
ATACGCCCACGTAAAACCAT+TGG 0.575532 3_3:-68463372 Msa0467260:CDS
GAAGGGCTCATTGTTTGTGA+TGG 0.577438 3_3:+68464040 None:intergenic
GAAAATGGGGTGCTCTAGCA+AGG 0.579347 3_3:+68464062 None:intergenic
ACTACTAATTTCCTCTGTAA+CGG 0.580767 3_3:-68464492 Msa0467260:intron
ATTGGGCCGCTGTCCTTGAA+AGG 0.581635 3_3:+68463319 None:intergenic
GGATTACCTTTCGGGTGTGG+AGG 0.584094 3_3:+68462801 None:intergenic
CCGCACTGGACATCAGTGCC+TGG 0.584220 3_3:+68464587 None:intergenic
CCGATGAAGGAAGCAGAGAT+CGG 0.584547 3_3:+68467538 None:intergenic
AGTATTCATCCACATCATGC+AGG 0.586151 3_3:-68463551 Msa0467260:CDS
GGTGCTCTAGCAAGGAGTTG+TGG 0.586973 3_3:+68464070 None:intergenic
GATATACCAGACAAAGGTTG+AGG 0.588352 3_3:+68463734 None:intergenic
AACAGTCAAGCTACTACTCA+GGG 0.591753 3_3:-68463266 Msa0467260:CDS
TGTAAGATTTGTGTCGGTGG+TGG 0.592288 3_3:+68463929 None:intergenic
TGGCTCTCAAATTAATAGCA+AGG 0.592840 3_3:-68466111 Msa0467260:five_prime_UTR
TTCCATCACGAAAACAGCCA+AGG 0.593130 3_3:+68465289 None:intergenic
CGACAAAGCTATCCTGCTCA+GGG 0.593335 3_3:-68462933 Msa0467260:CDS
TGTGGAGGTGCAACAGATGT+AGG 0.593982 3_3:+68462816 None:intergenic
AGAAATTGCATGAGAAGGGG+TGG 0.595200 3_3:+68464240 None:intergenic
CCTAATCAATCATCACTGAT+GGG 0.597079 3_3:+68462587 None:intergenic
AAAGTTCAAAACAAATTGAG+AGG 0.599794 3_3:-68466478 Msa0467260:five_prime_UTR
ATCAGCAACATATTTGGCTG+GGG 0.601455 3_3:+68463587 None:intergenic
TTCAGATGGATCCAGCTGGT+TGG 0.603188 3_3:+68463148 None:intergenic
GGCTGGTTAGCTATTGGTGA+CGG 0.603499 3_3:+68463710 None:intergenic
GATGTCTGGAGTTGTCCAGT+TGG 0.603942 3_3:+68463770 None:intergenic
GGAGCGGATATTCTTGGCGA+AGG 0.604340 3_3:+68463440 None:intergenic
GCGTATTGAGAGGCAGAAGT+AGG 0.604696 3_3:+68463389 None:intergenic
AACAATGGTTTAAAACCAGG+TGG 0.604788 3_3:+68465816 None:intergenic
AACCAGCCATTAACCCCTCA+CGG 0.606869 3_3:-68463695 Msa0467260:CDS
GGCGTGCGCGGACCAAAAGG+TGG 0.607996 3_3:+68463230 None:intergenic
AAGAGAAATTGCATGAGAAG+GGG 0.608351 3_3:+68464237 None:intergenic
TAACCCCTCACGGCAATATG+GGG 0.609736 3_3:-68463685 Msa0467260:CDS
AAGCTGAAATCAGACTTGAA+GGG 0.612202 3_3:+68464023 None:intergenic
AATGGTTTAAAACCAGGTGG+AGG 0.613040 3_3:+68465819 None:intergenic
TGGCTTACCGGACGCCAAGG+AGG 0.615968 3_3:+68462875 None:intergenic
GGATGAATACTACCAGGTCG+TGG 0.617992 3_3:+68463563 None:intergenic
AGAAACAGATACAGAAGGTG+TGG 0.618597 3_3:+68464300 None:intergenic
AAGCTTCAGATGGATCCAGC+TGG 0.622116 3_3:+68463144 None:intergenic
ACAGGATGCATTTGTCAGGA+AGG 0.622340 3_3:-68466429 Msa0467260:five_prime_UTR
GGTGACATTCCTGCATGATG+TGG 0.623925 3_3:+68463542 None:intergenic
TGGAATCCAGAAACAGGTGG+AGG 0.625781 3_3:+68463989 None:intergenic
TCATAGATTAGTAATAGGCA+CGG 0.629023 3_3:-68462706 Msa0467260:three_prime_UTR
TGCTGTAAGATTTGTGTCGG+TGG 0.629521 3_3:+68463926 None:intergenic
GAGTGCTGTAAGATTTGTGT+CGG 0.632626 3_3:+68463923 None:intergenic
AAGGTAATCCTGGAAAATGA+GGG 0.633788 3_3:-68462788 Msa0467260:exon
TTCGTGATGGAAAATGCTGT+CGG 0.635641 3_3:-68465278 Msa0467260:CDS
ATGGGGACCTGATCCGACAC+AGG 0.637383 3_3:-68466447 Msa0467260:five_prime_UTR
GCAAGGAGTTGTGGATTTGG+GGG 0.641065 3_3:+68464079 None:intergenic
AAATGCTAGAACTCGAAAAG+CGG 0.642409 3_3:-68465981 Msa0467260:CDS
CAGCCCCATATTGCCGTGAG+GGG 0.643697 3_3:+68463682 None:intergenic
GAGAGAAACGGGTCTTGTAG+GGG 0.644488 3_3:+68463640 None:intergenic
GCCAGTCCTGATGTCCAAAG+AGG 0.645143 3_3:-68462966 Msa0467260:CDS
ATGTTGCTGATTCCACGACC+TGG 0.646953 3_3:-68463575 Msa0467260:CDS
GGCATTGGTCCCAAAGACGA+TGG 0.647277 3_3:+68463512 None:intergenic
AGAGAAACGGGTCTTGTAGG+GGG 0.647357 3_3:+68463641 None:intergenic
ATGTCAACTCACCGTTACAG+AGG 0.648823 3_3:+68464481 None:intergenic
CTGAGCTAATGGAAGTGGAG+CGG 0.650968 3_3:+68463424 None:intergenic
GGAAATGCAGGGTGTCTGGG+TGG 0.652818 3_3:+68463074 None:intergenic
TCATTAGTCCCTATTATCCG+AGG 0.654001 3_3:-68466539 Msa0467260:five_prime_UTR
TGAGCTACGTCAGACCACTA+CGG 0.654542 3_3:-68467597 Msa0467260:five_prime_UTR
AAATCTTACAGCACTCACAA+TGG 0.658430 3_3:-68463916 Msa0467260:CDS
ATTGTTTGTGATGGAAAATG+GGG 0.661649 3_3:+68464049 None:intergenic
GACCAGCATATGGAAATGCA+GGG 0.662409 3_3:+68463063 None:intergenic
AGACCAACAAATTTGTACCC+AGG 0.663255 3_3:+68464923 None:intergenic
GTTGCACCTCCACACCCGAA+AGG 0.663887 3_3:-68462807 Msa0467260:CDS
ATTGGTCCCAAAGACGATGG+TGG 0.664092 3_3:+68463515 None:intergenic
CAATGCAGACTACTATCAAG+TGG 0.664785 3_3:-68463300 Msa0467260:CDS
ATCAGCCCCATATTGCCGTG+AGG 0.664920 3_3:+68463680 None:intergenic
GCAGCCAGTACACAAATGCA+AGG 0.664990 3_3:-68464184 Msa0467260:CDS
GGCACAGCAAACCTAAATGG+CGG 0.665012 3_3:+68463209 None:intergenic
GCCAGAAGAAGCAAATAAAG+GGG 0.669347 3_3:+68464111 None:intergenic
GGGTGGAATCCAGAAACAGG+TGG 0.670920 3_3:+68463986 None:intergenic
GCTGATTTGGAATAAATGGG+TGG 0.671775 3_3:+68463969 None:intergenic
TCTCCAGAAACAGATACAGA+AGG 0.675375 3_3:+68464295 None:intergenic
AAAGGGGTATGAGATGGTAA+GGG 0.676939 3_3:+68464127 None:intergenic
CATGGAACAAAAGCAGACAC+AGG 0.677149 3_3:-68464712 Msa0467260:CDS
TCCCGAATTTGAAGGCATGG+AGG 0.679044 3_3:+68463349 None:intergenic
GTGATGGAAAATGCTGTCGG+AGG 0.689250 3_3:-68465275 Msa0467260:CDS
AGACACTCAGAACTCAACGT+TGG 0.697590 3_3:-68466162 Msa0467260:five_prime_UTR
ATTGAGAGGAAATCAAGATG+GGG 0.702113 3_3:-68466464 Msa0467260:five_prime_UTR
GACGGCGATATACCAGACAA+AGG 0.704314 3_3:+68463728 None:intergenic
TGATGTGGATGAATACTACC+AGG 0.708791 3_3:+68463557 None:intergenic
AGTGCGCGTAGCCACCGTAG+TGG 0.717946 3_3:+68467583 None:intergenic
AGTCAAGCTACTACTCAGGG+TGG 0.734032 3_3:-68463263 Msa0467260:CDS
GTAGCTCCAGACATCTTGTG+TGG 0.735809 3_3:+68466647 None:intergenic
CCAGGCACTGATGTCCAGTG+CGG 0.751204 3_3:-68464587 Msa0467260:CDS
GCTACGTCAGACCACTACGG+TGG 0.768773 3_3:-68467594 Msa0467260:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTAGTATATATTAG+TGG - chr3_3:68463251-68463270 Msa0467260:CDS 10.0%
!! ATTTAATATATACATTTATC+AGG - chr3_3:68465288-68465307 Msa0467260:CDS 10.0%
!!! TGAAAGTATAAACATTAATT+TGG + chr3_3:68462699-68462718 None:intergenic 15.0%
!! ATAAAATGCTTAATATAGTT+GGG - chr3_3:68462740-68462759 Msa0467260:three_prime_UTR 15.0%
!!! TATTTTTCTTTTCTAAATCA+AGG + chr3_3:68462973-68462992 None:intergenic 15.0%
!! CTAAAATTACATTATAAGTT+GGG - chr3_3:68463716-68463735 Msa0467260:CDS 15.0%
!! AAAAAGGAAATATATACTTA+AGG + chr3_3:68464110-68464129 None:intergenic 15.0%
!! AATCCATATTATCATTATTA+AGG - chr3_3:68464491-68464510 Msa0467260:intron 15.0%
!! ATCCATATTATCATTATTAA+GGG - chr3_3:68464492-68464511 Msa0467260:intron 15.0%
!! AATATCTTAATGTTATCATT+TGG - chr3_3:68464968-68464987 Msa0467260:CDS 15.0%
!! TTAAAAAGTTATACAACAAA+GGG + chr3_3:68464997-68465016 None:intergenic 15.0%
!! AAAGATTAGAATTTAATTCA+GGG + chr3_3:68465256-68465275 None:intergenic 15.0%
!! AAAAGATTAGAATTTAATTC+AGG + chr3_3:68465257-68465276 None:intergenic 15.0%
!!! ACATAACATTTTATGATTTA+TGG - chr3_3:68465601-68465620 Msa0467260:intron 15.0%
!! TAATTTCATAGATTAGTAAT+AGG - chr3_3:68467335-68467354 Msa0467260:intron 15.0%
!!! GTGAAAATATGATTATATTT+TGG + chr3_3:68467542-68467561 None:intergenic 15.0%
!! ATTAATGTTTATACTTTCAG+AGG - chr3_3:68462700-68462719 Msa0467260:three_prime_UTR 20.0%
!! CATAAAATGCTTAATATAGT+TGG - chr3_3:68462739-68462758 Msa0467260:three_prime_UTR 20.0%
!! GAAATATTCTCATATGATAA+AGG - chr3_3:68463067-68463086 Msa0467260:CDS 20.0%
!! TTTGATTATATAACTACCAA+CGG + chr3_3:68463232-68463251 None:intergenic 20.0%
!!! ACAAAATAGTTTGTGTTATT+TGG - chr3_3:68463279-68463298 Msa0467260:CDS 20.0%
!! GCTAAAATTACATTATAAGT+TGG - chr3_3:68463715-68463734 Msa0467260:CDS 20.0%
!! AAACTACTGATGTTTATTTA+TGG - chr3_3:68464028-68464047 Msa0467260:CDS 20.0%
!! AACAACAAATTTAAATAGCA+CGG + chr3_3:68464317-68464336 None:intergenic 20.0%
!! TCATTAGTTATGAAAAGTAA+AGG - chr3_3:68464349-68464368 Msa0467260:intron 20.0%
!! TCCATATTATCATTATTAAG+GGG - chr3_3:68464493-68464512 Msa0467260:CDS 20.0%
!! CAACATAAAGAAATACTATA+AGG + chr3_3:68464539-68464558 None:intergenic 20.0%
!! GAATATCGTAATTGTAATAT+AGG + chr3_3:68464890-68464909 None:intergenic 20.0%
!! CTTAAAAAGTTATACAACAA+AGG + chr3_3:68464998-68465017 None:intergenic 20.0%
!!! AAATTTGTTGGTCTTATTTA+TGG - chr3_3:68465132-68465151 Msa0467260:intron 20.0%
!!! AATTTGTTGGTCTTATTTAT+GGG - chr3_3:68465133-68465152 Msa0467260:intron 20.0%
!! TAAACCATGTAATATTCTTT+AGG - chr3_3:68467568-68467587 Msa0467260:five_prime_UTR 20.0%
!! ATATCCTAAAGAATATTACA+TGG + chr3_3:68467575-68467594 None:intergenic 20.0%
!! TATAAACATTAATTTGGCGT+TGG + chr3_3:68462693-68462712 None:intergenic 25.0%
!!! CTATTTTCAGCTTATTTTCA+TGG - chr3_3:68462894-68462913 Msa0467260:CDS 25.0%
! TAATAAACTACTGTTACTGA+TGG - chr3_3:68463112-68463131 Msa0467260:CDS 25.0%
! TACAAATGTTTACTCTACAT+AGG - chr3_3:68463184-68463203 Msa0467260:CDS 25.0%
! ACAAATGTTTACTCTACATA+GGG - chr3_3:68463185-68463204 Msa0467260:CDS 25.0%
!!! ATCCTAATAACTTGTTTTTG+GGG + chr3_3:68463488-68463507 None:intergenic 25.0%
!!! GATCCTAATAACTTGTTTTT+GGG + chr3_3:68463489-68463508 None:intergenic 25.0%
!!! TGATCCTAATAACTTGTTTT+TGG + chr3_3:68463490-68463509 None:intergenic 25.0%
! AAAGTTCAAAACAAATTGAG+AGG - chr3_3:68463568-68463587 Msa0467260:CDS 25.0%
!!! ATTCCAACAACTTTGAAATT+TGG + chr3_3:68463845-68463864 None:intergenic 25.0%
!!! TCTAATTTTAGTATTTCACC+TGG + chr3_3:68464194-68464213 None:intergenic 25.0%
!! TTTAACAATGGTTTAAAACC+AGG + chr3_3:68464236-68464255 None:intergenic 25.0%
!! ACATTGTCTTCTTTTAACAA+TGG + chr3_3:68464248-68464267 None:intergenic 25.0%
!!! ATTTTAGAACCAATACTTAC+AGG + chr3_3:68464278-68464297 None:intergenic 25.0%
! AATTTAAATAGCACGGAATT+GGG + chr3_3:68464310-68464329 None:intergenic 25.0%
! AAATTTAAATAGCACGGAAT+TGG + chr3_3:68464311-68464330 None:intergenic 25.0%
! AAAGTAAAGGATACATTTAC+TGG - chr3_3:68464362-68464381 Msa0467260:intron 25.0%
! ATGATAATATGGATTTGACA+AGG + chr3_3:68464486-68464505 None:intergenic 25.0%
! ACCCCTTAATAATGATAATA+TGG + chr3_3:68464497-68464516 None:intergenic 25.0%
!!! GCCTTATTTTATTTCTTCAT+GGG - chr3_3:68464615-68464634 Msa0467260:intron 25.0%
! ACCCATGAAGAAATAAAATA+AGG + chr3_3:68464619-68464638 None:intergenic 25.0%
! AACATTCTTTCAAGAATATG+AGG + chr3_3:68464798-68464817 None:intergenic 25.0%
! TACAATTACGATATTCAAGT+AGG - chr3_3:68464894-68464913 Msa0467260:CDS 25.0%
! AAGATTAGATACCAACAAAA+TGG + chr3_3:68465198-68465217 None:intergenic 25.0%
! ATATACATTTATCAGGAAAC+TGG - chr3_3:68465295-68465314 Msa0467260:CDS 25.0%
!! TGTTCCATGAATTTTTATCT+TGG + chr3_3:68465323-68465342 None:intergenic 25.0%
! AGAAAGTAAGTTCTTTAATG+TGG - chr3_3:68465359-68465378 Msa0467260:intron 25.0%
! GTGAAAATGGATCATAAATT+TGG + chr3_3:68467211-68467230 None:intergenic 25.0%
!!! TTATTTCTAAGCAGAAAGTT+TGG - chr3_3:68467376-68467395 Msa0467260:intron 25.0%
!!! AAAGAAAGGTTGGTTTAAAA+AGG + chr3_3:68467430-68467449 None:intergenic 25.0%
CGTAAATGAAGATTTGAAGA+GGG + chr3_3:68462594-68462613 None:intergenic 30.0%
TCGTAAATGAAGATTTGAAG+AGG + chr3_3:68462595-68462614 None:intergenic 30.0%
! CCTATGTTTAAGTTTGAATC+AGG + chr3_3:68462633-68462652 None:intergenic 30.0%
CCTGATTCAAACTTAAACAT+AGG - chr3_3:68462630-68462649 Msa0467260:three_prime_UTR 30.0%
ATGTTTATACTTTCAGAGGT+CGG - chr3_3:68462704-68462723 Msa0467260:three_prime_UTR 30.0%
GTTAGTAGATAAGCTTAAAG+AGG + chr3_3:68462825-68462844 None:intergenic 30.0%
!! CTACTAACATAAGTTTTGTG+AGG - chr3_3:68462837-68462856 Msa0467260:CDS 30.0%
ATCAAGGAAGCTATAAAATG+AGG + chr3_3:68462957-68462976 None:intergenic 30.0%
! ATCATTTCTAAGGGTATGTT+TGG + chr3_3:68463026-68463045 None:intergenic 30.0%
GCACTTAGTATCATTTCTAA+GGG + chr3_3:68463035-68463054 None:intergenic 30.0%
AGCACTTAGTATCATTTCTA+AGG + chr3_3:68463036-68463055 None:intergenic 30.0%
!! CAAAAAAGTACTGTTACTGT+TGG - chr3_3:68463141-68463160 Msa0467260:CDS 30.0%
TTGTACATGTGATCAAAGAT+TGG + chr3_3:68463326-68463345 None:intergenic 30.0%
GATCACATGTACAAAGTTAT+TGG - chr3_3:68463332-68463351 Msa0467260:CDS 30.0%
ATCCCCAAAAACAAGTTATT+AGG - chr3_3:68463483-68463502 Msa0467260:CDS 30.0%
AAATTGAGAGGAAATCAAGA+TGG - chr3_3:68463580-68463599 Msa0467260:CDS 30.0%
AATTGAGAGGAAATCAAGAT+GGG - chr3_3:68463581-68463600 Msa0467260:CDS 30.0%
ATAACAGAGAATGCTTAGAA+AGG + chr3_3:68463677-68463696 None:intergenic 30.0%
TTAATAATTCGCATGAGTTC+TGG - chr3_3:68463761-68463780 Msa0467260:CDS 30.0%
!! ATTGGTTCTAAAATTCTGCT+AGG - chr3_3:68464284-68464303 Msa0467260:CDS 30.0%
ATTATCATTATTAAGGGGTG+TGG - chr3_3:68464498-68464517 Msa0467260:CDS 30.0%
GATTTGCACCAATACATATT+AGG - chr3_3:68464585-68464604 Msa0467260:CDS 30.0%
!!! GGCCTTATTTTATTTCTTCA+TGG - chr3_3:68464614-68464633 Msa0467260:intron 30.0%
TAACACTCATTAACATGCTA+AGG + chr3_3:68464664-68464683 None:intergenic 30.0%
TTAGTTAACTGCTCAAAAAC+AGG - chr3_3:68464681-68464700 Msa0467260:intron 30.0%
GAAAACTAAGTTGCAGTATA+AGG - chr3_3:68464818-68464837 Msa0467260:intron 30.0%
ATCGTAATTGTAATATAGGC+TGG + chr3_3:68464886-68464905 None:intergenic 30.0%
! AGAAGGTAAAACCATTTTGT+TGG - chr3_3:68465184-68465203 Msa0467260:intron 30.0%
GGTACCAAGATAAAAATTCA+TGG - chr3_3:68465316-68465335 Msa0467260:intron 30.0%
!!! AGCTGATAGTTTTGATAAAG+TGG - chr3_3:68465509-68465528 Msa0467260:intron 30.0%
GGAAATTAGTAGTTCAATGA+TGG + chr3_3:68465547-68465566 None:intergenic 30.0%
ACTACTAATTTCCTCTGTAA+CGG - chr3_3:68465554-68465573 Msa0467260:intron 30.0%
AAAGAGAAATTGCATGAGAA+GGG + chr3_3:68465813-68465832 None:intergenic 30.0%
! ATTGTTTGTGATGGAAAATG+GGG + chr3_3:68466000-68466019 None:intergenic 30.0%
! CATTGTTTGTGATGGAAAAT+GGG + chr3_3:68466001-68466020 None:intergenic 30.0%
! TCATTGTTTGTGATGGAAAA+TGG + chr3_3:68466002-68466021 None:intergenic 30.0%
!! ACTGCTGATTTGGAATAAAT+GGG + chr3_3:68466083-68466102 None:intergenic 30.0%
!! AACTGCTGATTTGGAATAAA+TGG + chr3_3:68466084-68466103 None:intergenic 30.0%
CTTATTACAGAAGGATTTCT+TGG + chr3_3:68466189-68466208 None:intergenic 30.0%
TTATGTGCACTTATTACAGA+AGG + chr3_3:68466198-68466217 None:intergenic 30.0%
! AATGAAAGTGAAGCATTTGT+TGG + chr3_3:68466231-68466250 None:intergenic 30.0%
TTATATTCAACATCTGGTTG+TGG + chr3_3:68466435-68466454 None:intergenic 30.0%
TCAACTGGAAACCATTTATT+AGG - chr3_3:68466570-68466589 Msa0467260:five_prime_UTR 30.0%
ATGAAACAGGTCCTAATAAA+TGG + chr3_3:68466584-68466603 None:intergenic 30.0%
GTAAAATTTCCCGAATTTGA+AGG + chr3_3:68466708-68466727 None:intergenic 30.0%
GAAAATGAGGGAATTGAATA+TGG - chr3_3:68467270-68467289 Msa0467260:intron 30.0%
TCATAGATTAGTAATAGGCA+CGG - chr3_3:68467340-68467359 Msa0467260:intron 30.0%
GAATACAGTAAGTCATCAAA+GGG + chr3_3:68467408-68467427 None:intergenic 30.0%
! TGAATTTACACTCGATGTTT+TGG - chr3_3:68467612-68467631 Msa0467260:five_prime_UTR 30.0%
! TATGTTTGGATGGAGGATTT+TGG + chr3_3:68463012-68463031 None:intergenic 35.0%
! TTTCTAAGGGTATGTTTGGA+TGG + chr3_3:68463022-68463041 None:intergenic 35.0%
TACATGTGATCAAAGATTGG+TGG + chr3_3:68463323-68463342 None:intergenic 35.0%
AGCCAAAAGCTCTCTAAATT+TGG - chr3_3:68463441-68463460 Msa0467260:CDS 35.0%
! CACCAAATTTAGAGAGCTTT+TGG + chr3_3:68463446-68463465 None:intergenic 35.0%
!! TCTAAATTTGGTGCCAAATC+TGG - chr3_3:68463453-68463472 Msa0467260:CDS 35.0%
!!! TTTTAGCTCCTCGGATAATA+GGG + chr3_3:68463518-68463537 None:intergenic 35.0%
!!! TTTTTAGCTCCTCGGATAAT+AGG + chr3_3:68463519-68463538 None:intergenic 35.0%
ATTGAGAGGAAATCAAGATG+GGG - chr3_3:68463582-68463601 Msa0467260:CDS 35.0%
GGACCAAATTTCAAAGTTGT+TGG - chr3_3:68463839-68463858 Msa0467260:CDS 35.0%
TGGCTCTCAAATTAATAGCA+AGG - chr3_3:68463935-68463954 Msa0467260:CDS 35.0%
AAATGCTAGAACTCGAAAAG+CGG - chr3_3:68464065-68464084 Msa0467260:CDS 35.0%
ATTAAAGGGGAGGAACAAAA+AGG + chr3_3:68464126-68464145 None:intergenic 35.0%
GCAGGCTATAAGAATTAAAG+GGG + chr3_3:68464139-68464158 None:intergenic 35.0%
CGCAGGCTATAAGAATTAAA+GGG + chr3_3:68464140-68464159 None:intergenic 35.0%
ACGCAGGCTATAAGAATTAA+AGG + chr3_3:68464141-68464160 None:intergenic 35.0%
CCTGGATATGATTAACATCA+AGG + chr3_3:68464176-68464195 None:intergenic 35.0%
CCTTGATGTTAATCATATCC+AGG - chr3_3:68464173-68464192 Msa0467260:CDS 35.0%
! AACAATGGTTTAAAACCAGG+TGG + chr3_3:68464233-68464252 None:intergenic 35.0%
TGCAATATCTTCCCAGTTAT+TGG - chr3_3:68464428-68464447 Msa0467260:intron 35.0%
GTGAATAGCAGCAATATACT+CGG - chr3_3:68464450-68464469 Msa0467260:intron 35.0%
TTTATGTTGTGAGCTGATGA+GGG - chr3_3:68464550-68464569 Msa0467260:CDS 35.0%
TTGCACCAATACATATTAGG+CGG - chr3_3:68464588-68464607 Msa0467260:CDS 35.0%
TCATGGGTTCAAATTGAACA+TGG - chr3_3:68464631-68464650 Msa0467260:intron 35.0%
! TTCTGGAAAAGGAAAAGTTC+TGG + chr3_3:68464717-68464736 None:intergenic 35.0%
! GAGAAGAACATTTCTGGAAA+AGG + chr3_3:68464728-68464747 None:intergenic 35.0%
ATGGATGAGAAGAACATTTC+TGG + chr3_3:68464734-68464753 None:intergenic 35.0%
! TTCTTCTCATCCATTTTCCT+TGG - chr3_3:68464740-68464759 Msa0467260:intron 35.0%
! AGTTTTCGTTGTAGAACTTC+AGG + chr3_3:68465066-68465085 None:intergenic 35.0%
ATATGCAGTACCATCTTTAC+AGG - chr3_3:68465089-68465108 Msa0467260:intron 35.0%
TATTCTTGGACCTGTAAAGA+TGG + chr3_3:68465102-68465121 None:intergenic 35.0%
ATTTGTACCCAGGATATTCT+TGG + chr3_3:68465116-68465135 None:intergenic 35.0%
TATCCTGGGTACAAATTTGT+TGG - chr3_3:68465120-68465139 Msa0467260:intron 35.0%
GGATGTCAATCAAAAGATAG+GGG + chr3_3:68465235-68465254 None:intergenic 35.0%
GGGATGTCAATCAAAAGATA+GGG + chr3_3:68465236-68465255 None:intergenic 35.0%
AGGGATGTCAATCAAAAGAT+AGG + chr3_3:68465237-68465256 None:intergenic 35.0%
CTTTGTATGTTCCATTTCCA+GGG - chr3_3:68465426-68465445 Msa0467260:intron 35.0%
! GTTTAATTTCACCCTGGAAA+TGG + chr3_3:68465440-68465459 None:intergenic 35.0%
ATATGTTGACATGCATCTCT+TGG + chr3_3:68465488-68465507 None:intergenic 35.0%
TCTTCTATGCTCTTCTATTC+AGG - chr3_3:68465705-68465724 Msa0467260:intron 35.0%
CTTCTATGCTCTTCTATTCA+GGG - chr3_3:68465706-68465725 Msa0467260:intron 35.0%
TTCTATGCTCTTCTATTCAG+GGG - chr3_3:68465707-68465726 Msa0467260:intron 35.0%
AAGAGAAATTGCATGAGAAG+GGG + chr3_3:68465812-68465831 None:intergenic 35.0%
GAAAGAGAAATTGCATGAGA+AGG + chr3_3:68465814-68465833 None:intergenic 35.0%
TTCTCTTTCTCTTGAAAACC+AGG - chr3_3:68465825-68465844 Msa0467260:CDS 35.0%
! ACTTTCAATACTCTGGTTCA+TGG - chr3_3:68465890-68465909 Msa0467260:intron 35.0%
TGCCAGAAGAAGCAAATAAA+GGG + chr3_3:68465939-68465958 None:intergenic 35.0%
AAGCTGAAATCAGACTTGAA+GGG + chr3_3:68466026-68466045 None:intergenic 35.0%
AAAGCTGAAATCAGACTTGA+AGG + chr3_3:68466027-68466046 None:intergenic 35.0%
! TCAAGTCTGATTTCAGCTTT+TGG - chr3_3:68466027-68466046 Msa0467260:CDS 35.0%
! TGCATAGAAAACTGCTGATT+TGG + chr3_3:68466093-68466112 None:intergenic 35.0%
AAATCTTACAGCACTCACAA+TGG - chr3_3:68466130-68466149 Msa0467260:five_prime_UTR 35.0%
! TGACCAAAAGGATTTGTTTG+AGG + chr3_3:68466156-68466175 None:intergenic 35.0%
! ACAAATCCTTTTGGTCAAGT+TGG - chr3_3:68466159-68466178 Msa0467260:five_prime_UTR 35.0%
! CAAATCCTTTTGGTCAAGTT+GGG - chr3_3:68466160-68466179 Msa0467260:five_prime_UTR 35.0%
ATTACAGAAGGATTTCTTGG+TGG + chr3_3:68466186-68466205 None:intergenic 35.0%
AATCAGCAACATATTTGGCT+GGG + chr3_3:68466463-68466482 None:intergenic 35.0%
! TCGGGAAATTTTACCTTTCA+AGG - chr3_3:68466714-68466733 Msa0467260:intron 35.0%
! ATTTTACCTTTCAAGGACAG+CGG - chr3_3:68466721-68466740 Msa0467260:intron 35.0%
! ACTTGATAGTAGTCTGCATT+GGG + chr3_3:68466747-68466766 None:intergenic 35.0%
TTGCTAAACTTCTGATTCAG+AGG + chr3_3:68467146-68467165 None:intergenic 35.0%
! ATTTTCCAGGATTACCTTTC+GGG + chr3_3:68467256-68467275 None:intergenic 35.0%
! CATTTTCCAGGATTACCTTT+CGG + chr3_3:68467257-68467276 None:intergenic 35.0%
AAAGGTAATCCTGGAAAATG+AGG - chr3_3:68467257-68467276 Msa0467260:intron 35.0%
AAGGTAATCCTGGAAAATGA+GGG - chr3_3:68467258-68467277 Msa0467260:intron 35.0%
! ATTCAATTCCCTCATTTTCC+AGG + chr3_3:68467269-68467288 None:intergenic 35.0%
ACACTGACAAATACGAAATG+AGG - chr3_3:68467306-68467325 Msa0467260:intron 35.0%
GGAATACAGTAAGTCATCAA+AGG + chr3_3:68467409-68467428 None:intergenic 35.0%
GCATTCAGAAAAAGAAAGGT+TGG + chr3_3:68467440-68467459 None:intergenic 35.0%
ATGGGCATTCAGAAAAAGAA+AGG + chr3_3:68467444-68467463 None:intergenic 35.0%
CCTAATCAATCATCACTGAT+GGG + chr3_3:68467462-68467481 None:intergenic 35.0%
TCCTAATCAATCATCACTGA+TGG + chr3_3:68467463-68467482 None:intergenic 35.0%
! TTTGGATGGAGGATTTTGGA+GGG + chr3_3:68463008-68463027 None:intergenic 40.0%
CATAGGGAATGCATGTTCTT+TGG - chr3_3:68463201-68463220 Msa0467260:CDS 40.0%
ATGTTCTTTGGTATTGCCGT+TGG - chr3_3:68463213-68463232 Msa0467260:CDS 40.0%
GGGGATAACAAATCCAGATT+TGG + chr3_3:68463469-68463488 None:intergenic 40.0%
TCATTAGTCCCTATTATCCG+AGG - chr3_3:68463507-68463526 Msa0467260:CDS 40.0%
ATCCGAGGAGCTAAAAAAGA+TGG - chr3_3:68463522-68463541 Msa0467260:CDS 40.0%
TCCGAGGAGCTAAAAAAGAT+GGG - chr3_3:68463523-68463542 Msa0467260:CDS 40.0%
GCTAAAAAAGATGGGGTTAC+TGG - chr3_3:68463531-68463550 Msa0467260:CDS 40.0%
AGCATCACTTATTCAGACCT+TGG + chr3_3:68463790-68463809 None:intergenic 40.0%
! ACACCTTTTGTAGATTCGTG+TGG - chr3_3:68463818-68463837 Msa0467260:CDS 40.0%
TTCTGAGTGTCTCTAATCTC+TGG + chr3_3:68463876-68463895 None:intergenic 40.0%
AACCCAGATAAAAGCAAGTC+TGG - chr3_3:68463915-68463934 Msa0467260:CDS 40.0%
!! AGCCAGACTTGCTTTTATCT+GGG + chr3_3:68463920-68463939 None:intergenic 40.0%
AATGCTAGAACTCGAAAAGC+GGG - chr3_3:68464066-68464085 Msa0467260:CDS 40.0%
GGCTATAAGAATTAAAGGGG+AGG + chr3_3:68464136-68464155 None:intergenic 40.0%
AAGGTCATTATCGAATACGC+AGG + chr3_3:68464157-68464176 None:intergenic 40.0%
! AATGGTTTAAAACCAGGTGG+AGG + chr3_3:68464230-68464249 None:intergenic 40.0%
GTTCCTTTGCCTGTAAGTAT+TGG - chr3_3:68464266-68464285 Msa0467260:CDS 40.0%
GAACCAATACTTACAGGCAA+AGG + chr3_3:68464272-68464291 None:intergenic 40.0%
GCTGCTATTCACCAATAACT+GGG + chr3_3:68464442-68464461 None:intergenic 40.0%
TGCTGCTATTCACCAATAAC+TGG + chr3_3:68464443-68464462 None:intergenic 40.0%
CTTTATGTTGTGAGCTGATG+AGG - chr3_3:68464549-68464568 Msa0467260:CDS 40.0%
TTATGTTGTGAGCTGATGAG+GGG - chr3_3:68464551-68464570 Msa0467260:CDS 40.0%
! AGCTGATGAGGGGAAATTTT+AGG - chr3_3:68464561-68464580 Msa0467260:CDS 40.0%
ACGAAAACAGCCAAGGAAAA+TGG + chr3_3:68464753-68464772 None:intergenic 40.0%
! TTCGTGATGGAAAATGCTGT+CGG - chr3_3:68464768-68464787 Msa0467260:intron 40.0%
TTACAGGTCCAAGAATATCC+TGG - chr3_3:68465105-68465124 Msa0467260:intron 40.0%
TACAGGTCCAAGAATATCCT+GGG - chr3_3:68465106-68465125 Msa0467260:intron 40.0%
AGACCAACAAATTTGTACCC+AGG + chr3_3:68465126-68465145 None:intergenic 40.0%
!! GGTCTTATTTATGGGACTGA+AGG - chr3_3:68465141-68465160 Msa0467260:intron 40.0%
AGATAGGGGTTGCATATAAG+AGG + chr3_3:68465221-68465240 None:intergenic 40.0%
! GTGGCTTTTATTCTGCATCA+AGG - chr3_3:68465378-68465397 Msa0467260:intron 40.0%
GCTTTGTATGTTCCATTTCC+AGG - chr3_3:68465425-68465444 Msa0467260:intron 40.0%
TTCCAGGGTGAAATTAAACC+AGG - chr3_3:68465441-68465460 Msa0467260:intron 40.0%
AGAAACAGATACAGAAGGTG+TGG + chr3_3:68465749-68465768 None:intergenic 40.0%
ACACCTTCTGTATCTGTTTC+TGG - chr3_3:68465748-68465767 Msa0467260:intron 40.0%
TCTCCAGAAACAGATACAGA+AGG + chr3_3:68465754-68465773 None:intergenic 40.0%
ATCTCCTTGCATTTGTGTAC+TGG + chr3_3:68465869-68465888 None:intergenic 40.0%
GGAGATCACTTTCAATACTC+TGG - chr3_3:68465883-68465902 Msa0467260:intron 40.0%
! AAAGGGGTATGAGATGGTAA+GGG + chr3_3:68465922-68465941 None:intergenic 40.0%
! TAAAGGGGTATGAGATGGTA+AGG + chr3_3:68465923-68465942 None:intergenic 40.0%
! GCAAATAAAGGGGTATGAGA+TGG + chr3_3:68465928-68465947 None:intergenic 40.0%
! ACCCCTTTATTTGCTTCTTC+TGG - chr3_3:68465934-68465953 Msa0467260:intron 40.0%
GCCAGAAGAAGCAAATAAAG+GGG + chr3_3:68465938-68465957 None:intergenic 40.0%
CTGCCAGAAGAAGCAAATAA+AGG + chr3_3:68465940-68465959 None:intergenic 40.0%
TAGCAAGGAGTTGTGGATTT+GGG + chr3_3:68465972-68465991 None:intergenic 40.0%
!! GCTGATTTGGAATAAATGGG+TGG + chr3_3:68466080-68466099 None:intergenic 40.0%
! GAGTGCTGTAAGATTTGTGT+CGG + chr3_3:68466126-68466145 None:intergenic 40.0%
! TGGCCTCAAACAAATCCTTT+TGG - chr3_3:68466150-68466169 Msa0467260:five_prime_UTR 40.0%
!! GTTGGTTGGCTTAAAGAAAC+TGG + chr3_3:68466255-68466274 None:intergenic 40.0%
GATATACCAGACAAAGGTTG+AGG + chr3_3:68466315-68466334 None:intergenic 40.0%
! GTTAATGGCTGGTTAGCTAT+TGG + chr3_3:68466345-68466364 None:intergenic 40.0%
GGTGGCTTATATTCAACATC+TGG + chr3_3:68466441-68466460 None:intergenic 40.0%
ATCAGCAACATATTTGGCTG+GGG + chr3_3:68466462-68466481 None:intergenic 40.0%
GAATCAGCAACATATTTGGC+TGG + chr3_3:68466464-68466483 None:intergenic 40.0%
CGTGGAATCAGCAACATATT+TGG + chr3_3:68466468-68466487 None:intergenic 40.0%
TGATGTGGATGAATACTACC+AGG + chr3_3:68466492-68466511 None:intergenic 40.0%
AGTATTCATCCACATCATGC+AGG - chr3_3:68466495-68466514 Msa0467260:five_prime_UTR 40.0%
ATTCCTGATTGCTGAGCTAA+TGG + chr3_3:68466636-68466655 None:intergenic 40.0%
ATTTCCCGAATTTGAAGGCA+TGG + chr3_3:68466703-68466722 None:intergenic 40.0%
! CACTTGATAGTAGTCTGCAT+TGG + chr3_3:68466748-68466767 None:intergenic 40.0%
CAATGCAGACTACTATCAAG+TGG - chr3_3:68466746-68466765 Msa0467260:intron 40.0%
TGAGTAGTAGCTTGACTGTT+TGG + chr3_3:68466780-68466799 None:intergenic 40.0%
AAACAGTCAAGCTACTACTC+AGG - chr3_3:68466779-68466798 Msa0467260:intron 40.0%
AACAGTCAAGCTACTACTCA+GGG - chr3_3:68466780-68466799 Msa0467260:intron 40.0%
AGCCTCTTCAAAGCTTTCAA+AGG - chr3_3:68466865-68466884 Msa0467260:intron 40.0%
!! GTCCTTTGAAAGCTTTGAAG+AGG + chr3_3:68466870-68466889 None:intergenic 40.0%
ATTTGTGGGACTTGAGATCT+TGG + chr3_3:68467017-68467036 None:intergenic 40.0%
AAGATCTCAAGTCCCACAAA+TGG - chr3_3:68467016-68467035 Msa0467260:intron 40.0%
AGATCTCAAGTCCCACAAAT+GGG - chr3_3:68467017-68467036 Msa0467260:intron 40.0%
AGTTCCTCATACCCATTTGT+GGG + chr3_3:68467031-68467050 None:intergenic 40.0%
AAGTTCCTCATACCCATTTG+TGG + chr3_3:68467032-68467051 None:intergenic 40.0%
! TGGCCAAGTTTTGCATTTGA+GGG + chr3_3:68467064-68467083 None:intergenic 40.0%
GGATCATAAATTTGGTCTGC+AGG + chr3_3:68467203-68467222 None:intergenic 40.0%
GCAACAGATGTAGGTGAAAA+TGG + chr3_3:68467224-68467243 None:intergenic 40.0%
CCCATCAGTGATGATTGATT+AGG - chr3_3:68467459-68467478 Msa0467260:intron 40.0%
!! TTGGATGGAGGATTTTGGAG+GGG + chr3_3:68463007-68463026 None:intergenic 45.0%
! GTTTGGATGGAGGATTTTGG+AGG + chr3_3:68463009-68463028 None:intergenic 45.0%
! CTAAGGGTATGTTTGGATGG+AGG + chr3_3:68463019-68463038 None:intergenic 45.0%
!! GAGAGCTTTTGGCTACTAGA+AGG + chr3_3:68463435-68463454 None:intergenic 45.0%
!!! CCCCATCTTTTTTAGCTCCT+CGG + chr3_3:68463527-68463546 None:intergenic 45.0%
CCGAGGAGCTAAAAAAGATG+GGG - chr3_3:68463524-68463543 Msa0467260:CDS 45.0%
CTGACAAATGCATCCTGTGT+CGG + chr3_3:68463615-68463634 None:intergenic 45.0%
ACAGGATGCATTTGTCAGGA+AGG - chr3_3:68463617-68463636 Msa0467260:CDS 45.0%
TGCATTTGTCAGGAAGGCTA+AGG - chr3_3:68463623-68463642 Msa0467260:CDS 45.0%
! TGTCAGGAAGGCTAAGGTTT+TGG - chr3_3:68463629-68463648 Msa0467260:CDS 45.0%
! TTGGCATTGCAGGTGTTTTC+TGG - chr3_3:68463648-68463667 Msa0467260:CDS 45.0%
GGTCCACACGAATCTACAAA+AGG + chr3_3:68463824-68463843 None:intergenic 45.0%
AGACACTCAGAACTCAACGT+TGG - chr3_3:68463884-68463903 Msa0467260:CDS 45.0%
!! GAGCCAGACTTGCTTTTATC+TGG + chr3_3:68463921-68463940 None:intergenic 45.0%
! ATTATTAAGGGGTGTGGCCA+AGG - chr3_3:68464504-68464523 Msa0467260:CDS 45.0%
CTATAAGGCCCACAAAACCT+TGG + chr3_3:68464524-68464543 None:intergenic 45.0%
CCTCACCGCCTAATATGTAT+TGG + chr3_3:68464596-68464615 None:intergenic 45.0%
CCAATACATATTAGGCGGTG+AGG - chr3_3:68464593-68464612 Msa0467260:CDS 45.0%
!! TTCCTTGGCTGTTTTCGTGA+TGG - chr3_3:68464755-68464774 Msa0467260:intron 45.0%
TTCCATCACGAAAACAGCCA+AGG + chr3_3:68464760-68464779 None:intergenic 45.0%
AGGTGATAATCAGAAGCGAC+TGG - chr3_3:68465161-68465180 Msa0467260:intron 45.0%
TAATCAGAAGCGACTGGAGA+AGG - chr3_3:68465167-68465186 Msa0467260:intron 45.0%
CATGGAACAAAAGCAGACAC+AGG - chr3_3:68465334-68465353 Msa0467260:intron 45.0%
! TGCCTGGTTTAATTTCACCC+TGG + chr3_3:68465446-68465465 None:intergenic 45.0%
ATGTCAACTCACCGTTACAG+AGG + chr3_3:68465568-68465587 None:intergenic 45.0%
AGAAATTGCATGAGAAGGGG+TGG + chr3_3:68465809-68465828 None:intergenic 45.0%
AGCAAGGAGTTGTGGATTTG+GGG + chr3_3:68465971-68465990 None:intergenic 45.0%
CTAGCAAGGAGTTGTGGATT+TGG + chr3_3:68465973-68465992 None:intergenic 45.0%
GAAGGGCTCATTGTTTGTGA+TGG + chr3_3:68466009-68466028 None:intergenic 45.0%
AATGGGTGGAATCCAGAAAC+AGG + chr3_3:68466066-68466085 None:intergenic 45.0%
! TGTAAGATTTGTGTCGGTGG+TGG + chr3_3:68466120-68466139 None:intergenic 45.0%
TGCTGTAAGATTTGTGTCGG+TGG + chr3_3:68466123-68466142 None:intergenic 45.0%
TTAAGCCAACCAACACCAAC+TGG - chr3_3:68466261-68466280 Msa0467260:intron 45.0%
ATATTGCCGTGAGGGGTTAA+TGG + chr3_3:68466360-68466379 None:intergenic 45.0%
ATTAACCCCTCACGGCAATA+TGG - chr3_3:68466359-68466378 Msa0467260:intron 45.0%
TTAACCCCTCACGGCAATAT+GGG - chr3_3:68466360-68466379 Msa0467260:intron 45.0%
GAATGAACAGTTCCTGGCAT+TGG + chr3_3:68466552-68466571 None:intergenic 45.0%
CCAGTTGAATGAACAGTTCC+TGG + chr3_3:68466558-68466577 None:intergenic 45.0%
CCAGGAACTGTTCATTCAAC+TGG - chr3_3:68466555-68466574 Msa0467260:five_prime_UTR 45.0%
CTTGGCGAAGGAAATGAAAC+AGG + chr3_3:68466597-68466616 None:intergenic 45.0%
GATTGCTGAGCTAATGGAAG+TGG + chr3_3:68466630-68466649 None:intergenic 45.0%
CTTCCATTAGCTCAGCAATC+AGG - chr3_3:68466630-68466649 Msa0467260:five_prime_UTR 45.0%
! TTTTACGTGGGCGTATTGAG+AGG + chr3_3:68466670-68466689 None:intergenic 45.0%
ATACGCCCACGTAAAACCAT+TGG - chr3_3:68466674-68466693 Msa0467260:five_prime_UTR 45.0%
GTAGCTTGACTGTTTGGTCT+GGG + chr3_3:68466774-68466793 None:intergenic 45.0%
AGTAGCTTGACTGTTTGGTC+TGG + chr3_3:68466775-68466794 None:intergenic 45.0%
TCAGGCACAGCAAACCTAAA+TGG + chr3_3:68466843-68466862 None:intergenic 45.0%
!! AAGCTTTGAAGAGGCTGATC+AGG + chr3_3:68466861-68466880 None:intergenic 45.0%
! TATGGAAATGCAGGGTGTCT+GGG + chr3_3:68466978-68466997 None:intergenic 45.0%
! ATATGGAAATGCAGGGTGTC+TGG + chr3_3:68466979-68466998 None:intergenic 45.0%
GACCAGCATATGGAAATGCA+GGG + chr3_3:68466986-68467005 None:intergenic 45.0%
TGACCAGCATATGGAAATGC+AGG + chr3_3:68466987-68467006 None:intergenic 45.0%
AAGTCCCACAAATGGGTATG+AGG - chr3_3:68467024-68467043 Msa0467260:intron 45.0%
! AAGTTTTGCATTTGAGGGGC+AGG + chr3_3:68467059-68467078 None:intergenic 45.0%
TGCCCCTCAAATGCAAAACT+TGG - chr3_3:68467058-68467077 Msa0467260:intron 45.0%
! GGCCAAGTTTTGCATTTGAG+GGG + chr3_3:68467063-68467082 None:intergenic 45.0%
! CTGGCCAAGTTTTGCATTTG+AGG + chr3_3:68467065-68467084 None:intergenic 45.0%
TGCATACCTCTTTGGACATC+AGG + chr3_3:68467089-68467108 None:intergenic 45.0%
GTCGATTGTGCATACCTCTT+TGG + chr3_3:68467097-68467116 None:intergenic 45.0%
GTTTAGCAACAATCCCTCCT+TGG - chr3_3:68467157-68467176 Msa0467260:intron 45.0%
TGAGCTACGTCAGACCACTA+CGG - chr3_3:68462449-68462468 Msa0467260:three_prime_UTR 50.0%
CCGATGAAGGAAGCAGAGAT+CGG + chr3_3:68462511-68462530 None:intergenic 50.0%
CCGATCTCTGCTTCCTTCAT+CGG - chr3_3:68462508-68462527 Msa0467260:three_prime_UTR 50.0%
!! GAGAGAGAGAGTACCGATGA+AGG + chr3_3:68462524-68462543 None:intergenic 50.0%
!! ATGGAGGATTTTGGAGGGGA+GGG + chr3_3:68463003-68463022 None:intergenic 50.0%
TCTGCACCACACAAGATGTC+TGG - chr3_3:68463393-68463412 Msa0467260:CDS 50.0%
GTAGCTCCAGACATCTTGTG+TGG + chr3_3:68463402-68463421 None:intergenic 50.0%
AATGCATCCTGTGTCGGATC+AGG + chr3_3:68463609-68463628 None:intergenic 50.0%
CGACACAGGATGCATTTGTC+AGG - chr3_3:68463613-68463632 Msa0467260:CDS 50.0%
!! GGCTAAGGTTTTGGCATTGC+AGG - chr3_3:68463638-68463657 Msa0467260:CDS 50.0%
!! CGCATGAGTTCTGGTTTCCA+AGG - chr3_3:68463770-68463789 Msa0467260:CDS 50.0%
CACTCAGAACTCAACGTTGG+TGG - chr3_3:68463887-68463906 Msa0467260:CDS 50.0%
CTCGAAAAGCGGGAAGCAAT+AGG - chr3_3:68464076-68464095 Msa0467260:CDS 50.0%
! GTGATGGAAAATGCTGTCGG+AGG - chr3_3:68464771-68464790 Msa0467260:intron 50.0%
!! TGCATTTGTGTACTGGCTGC+AGG + chr3_3:68465862-68465881 None:intergenic 50.0%
GCAGCCAGTACACAAATGCA+AGG - chr3_3:68465862-68465881 Msa0467260:intron 50.0%
GCAAGGAGTTGTGGATTTGG+GGG + chr3_3:68465970-68465989 None:intergenic 50.0%
! GAAAATGGGGTGCTCTAGCA+AGG + chr3_3:68465987-68466006 None:intergenic 50.0%
TGGAATCCAGAAACAGGTGG+AGG + chr3_3:68466060-68466079 None:intergenic 50.0%
!! GTTGTCCAGTTGGTGTTGGT+TGG + chr3_3:68466269-68466288 None:intergenic 50.0%
! TGGAGTTGTCCAGTTGGTGT+TGG + chr3_3:68466273-68466292 None:intergenic 50.0%
! GATGTCTGGAGTTGTCCAGT+TGG + chr3_3:68466279-68466298 None:intergenic 50.0%
GCGTTGAAGAGACTGATGTC+TGG + chr3_3:68466293-68466312 None:intergenic 50.0%
TCAACGCCTCAACCTTTGTC+TGG - chr3_3:68466306-68466325 Msa0467260:intron 50.0%
GACGGCGATATACCAGACAA+AGG + chr3_3:68466321-68466340 None:intergenic 50.0%
! GGCTGGTTAGCTATTGGTGA+CGG + chr3_3:68466339-68466358 None:intergenic 50.0%
AACCAGCCATTAACCCCTCA+CGG - chr3_3:68466351-68466370 Msa0467260:intron 50.0%
TAACCCCTCACGGCAATATG+GGG - chr3_3:68466361-68466380 Msa0467260:intron 50.0%
! AGAGAAACGGGTCTTGTAGG+GGG + chr3_3:68466408-68466427 None:intergenic 50.0%
! GAGAGAAACGGGTCTTGTAG+GGG + chr3_3:68466409-68466428 None:intergenic 50.0%
! CGAGAGAAACGGGTCTTGTA+GGG + chr3_3:68466410-68466429 None:intergenic 50.0%
CCTACAAGACCCGTTTCTCT+CGG - chr3_3:68466408-68466427 Msa0467260:intron 50.0%
TGGTTGTGGACCGAGAGAAA+CGG + chr3_3:68466421-68466440 None:intergenic 50.0%
AGCAACATATTTGGCTGGGG+TGG + chr3_3:68466459-68466478 None:intergenic 50.0%
!! ATGTTGCTGATTCCACGACC+TGG - chr3_3:68466471-68466490 Msa0467260:five_prime_UTR 50.0%
GGATGAATACTACCAGGTCG+TGG + chr3_3:68466486-68466505 None:intergenic 50.0%
GGTGACATTCCTGCATGATG+TGG + chr3_3:68466507-68466526 None:intergenic 50.0%
ACCTAGACCACCATCGTCTT+TGG - chr3_3:68466524-68466543 Msa0467260:five_prime_UTR 50.0%
CCTAGACCACCATCGTCTTT+GGG - chr3_3:68466525-68466544 Msa0467260:five_prime_UTR 50.0%
ATTGGTCCCAAAGACGATGG+TGG + chr3_3:68466534-68466553 None:intergenic 50.0%
GGAAGTGGAGCGGATATTCT+TGG + chr3_3:68466615-68466634 None:intergenic 50.0%
CTGAGCTAATGGAAGTGGAG+CGG + chr3_3:68466625-68466644 None:intergenic 50.0%
GCGTATTGAGAGGCAGAAGT+AGG + chr3_3:68466660-68466679 None:intergenic 50.0%
!! GGAGGCCAATGGTTTTACGT+GGG + chr3_3:68466682-68466701 None:intergenic 50.0%
!! TGGAGGCCAATGGTTTTACG+TGG + chr3_3:68466683-68466702 None:intergenic 50.0%
! TTTGAAGGCATGGAGGCCAA+TGG + chr3_3:68466693-68466712 None:intergenic 50.0%
GGCCTCCATGCCTTCAAATT+CGG - chr3_3:68466695-68466714 Msa0467260:five_prime_UTR 50.0%
GCCTCCATGCCTTCAAATTC+GGG - chr3_3:68466696-68466715 Msa0467260:five_prime_UTR 50.0%
! TCCCGAATTTGAAGGCATGG+AGG + chr3_3:68466700-68466719 None:intergenic 50.0%
AGTCAAGCTACTACTCAGGG+TGG - chr3_3:68466783-68466802 Msa0467260:intron 50.0%
! GGTACACAAGAGCCACCTTT+TGG - chr3_3:68466804-68466823 Msa0467260:intron 50.0%
GGCACAGCAAACCTAAATGG+CGG + chr3_3:68466840-68466859 None:intergenic 50.0%
TTCAGATGGATCCAGCTGGT+TGG + chr3_3:68466901-68466920 None:intergenic 50.0%
AAGCTTCAGATGGATCCAGC+TGG + chr3_3:68466905-68466924 None:intergenic 50.0%
GCAGAGACGTAAGCTTCAGA+TGG + chr3_3:68466915-68466934 None:intergenic 50.0%
! TACGTCTCTGCTGCTCCTTT+TGG - chr3_3:68466924-68466943 Msa0467260:intron 50.0%
! ACGTCTCTGCTGCTCCTTTT+GGG - chr3_3:68466925-68466944 Msa0467260:intron 50.0%
GAACCTGAACTTCCCCCAAA+AGG + chr3_3:68466942-68466961 None:intergenic 50.0%
CACCCTGCATTTCCATATGC+TGG - chr3_3:68466981-68467000 Msa0467260:intron 50.0%
ACCTCTTTGGACATCAGGAC+TGG + chr3_3:68467084-68467103 None:intergenic 50.0%
TCGACAAAGCTATCCTGCTC+AGG - chr3_3:68467112-68467131 Msa0467260:intron 50.0%
CGACAAAGCTATCCTGCTCA+GGG - chr3_3:68467113-68467132 Msa0467260:intron 50.0%
ATTTGGTCTGCAGGATGTGC+TGG + chr3_3:68467194-68467213 None:intergenic 50.0%
! TGTGGAGGTGCAACAGATGT+AGG + chr3_3:68467233-68467252 None:intergenic 50.0%
!! TGGAGGATTTTGGAGGGGAG+GGG + chr3_3:68463002-68463021 None:intergenic 55.0%
!! GATGGAGGATTTTGGAGGGG+AGG + chr3_3:68463004-68463023 None:intergenic 55.0%
CCAGGTGGAGGCTTGTAACT+GGG + chr3_3:68464218-68464237 None:intergenic 55.0%
ACCAGGTGGAGGCTTGTAAC+TGG + chr3_3:68464219-68464238 None:intergenic 55.0%
!! GGGTGTGGCCAAGGTTTTGT+GGG - chr3_3:68464513-68464532 Msa0467260:CDS 55.0%
! GCATCTCTTGGTAACCGCAC+TGG + chr3_3:68465476-68465495 None:intergenic 55.0%
!! ATTCAGGGGCATTCAGCTGC+TGG - chr3_3:68465721-68465740 Msa0467260:intron 55.0%
! CTGCAGGTTGAAACACAGCC+TGG + chr3_3:68465846-68465865 None:intergenic 55.0%
GGTGCTCTAGCAAGGAGTTG+TGG + chr3_3:68465979-68465998 None:intergenic 55.0%
GCTCAACCTCCACCTGTTTC+TGG - chr3_3:68466051-68466070 Msa0467260:five_prime_UTR 55.0%
GGGTGGAATCCAGAAACAGG+TGG + chr3_3:68466063-68466082 None:intergenic 55.0%
GGTGGCCCAACTTGACCAAA+AGG + chr3_3:68466168-68466187 None:intergenic 55.0%
TCAGCCCCATATTGCCGTGA+GGG + chr3_3:68466368-68466387 None:intergenic 55.0%
ATCAGCCCCATATTGCCGTG+AGG + chr3_3:68466369-68466388 None:intergenic 55.0%
TCACGGCAATATGGGGCTGA+TGG - chr3_3:68466368-68466387 Msa0467260:intron 55.0%
! CCGAGAGAAACGGGTCTTGT+AGG + chr3_3:68466411-68466430 None:intergenic 55.0%
GGTTGTGGACCGAGAGAAAC+GGG + chr3_3:68466420-68466439 None:intergenic 55.0%
! CCCAAAGACGATGGTGGTCT+AGG + chr3_3:68466528-68466547 None:intergenic 55.0%
!! GGCATTGGTCCCAAAGACGA+TGG + chr3_3:68466537-68466556 None:intergenic 55.0%
!! TCGTCTTTGGGACCAATGCC+AGG - chr3_3:68466537-68466556 Msa0467260:five_prime_UTR 55.0%
GGAGCGGATATTCTTGGCGA+AGG + chr3_3:68466609-68466628 None:intergenic 55.0%
ATTGGGCCGCTGTCCTTGAA+AGG + chr3_3:68466730-68466749 None:intergenic 55.0%
GACACAAGTCTCCAACCAGC+TGG - chr3_3:68466887-68466906 Msa0467260:intron 55.0%
! CGTCTCTGCTGCTCCTTTTG+GGG - chr3_3:68466926-68466945 Msa0467260:intron 55.0%
! GTCTCTGCTGCTCCTTTTGG+GGG - chr3_3:68466927-68466946 Msa0467260:intron 55.0%
!! GCTCCTTTTGGGGGAAGTTC+AGG - chr3_3:68466936-68466955 Msa0467260:intron 55.0%
! GGTGCAGGTTGACCAGCATA+TGG + chr3_3:68466996-68467015 None:intergenic 55.0%
! GGGACTTGAGATCTTGGTGC+AGG + chr3_3:68467011-68467030 None:intergenic 55.0%
GCCAGTCCTGATGTCCAAAG+AGG - chr3_3:68467080-68467099 Msa0467260:intron 55.0%
AACAATCCCTCCTTGGCGTC+CGG - chr3_3:68467164-68467183 Msa0467260:intron 55.0%
!! TGCAGGATGTGCTGGCTTAC+CGG + chr3_3:68467186-68467205 None:intergenic 55.0%
! GGATTACCTTTCGGGTGTGG+AGG + chr3_3:68467248-68467267 None:intergenic 55.0%
! CCAGGATTACCTTTCGGGTG+TGG + chr3_3:68467251-68467270 None:intergenic 55.0%
CCACACCCGAAAGGTAATCC+TGG - chr3_3:68467248-68467267 Msa0467260:intron 55.0%
GCTACGTCAGACCACTACGG+TGG - chr3_3:68462452-68462471 Msa0467260:three_prime_UTR 60.0%
!! GGATTTTGGAGGGGAGGGGA+GGG + chr3_3:68462998-68463017 None:intergenic 60.0%
!! AGGATTTTGGAGGGGAGGGG+AGG + chr3_3:68462999-68463018 None:intergenic 60.0%
ATGGGGACCTGATCCGACAC+AGG - chr3_3:68463599-68463618 Msa0467260:CDS 60.0%
CCCAGTTACAAGCCTCCACC+TGG - chr3_3:68464215-68464234 Msa0467260:CDS 60.0%
! GGGGTGTGGCCAAGGTTTTG+TGG - chr3_3:68464512-68464531 Msa0467260:CDS 60.0%
!! CCAGGCACTGATGTCCAGTG+CGG - chr3_3:68465459-68465478 Msa0467260:intron 60.0%
TGCCGTGAGGGGTTAATGGC+TGG + chr3_3:68466356-68466375 None:intergenic 60.0%
CAGCCCCATATTGCCGTGAG+GGG + chr3_3:68466367-68466386 None:intergenic 60.0%
TATGGGGCTGATGGCTCCAC+CGG - chr3_3:68466377-68466396 Msa0467260:intron 60.0%
! GGTCTTGTAGGGGGAACTGC+CGG + chr3_3:68466399-68466418 None:intergenic 60.0%
AACCTAAATGGCGGCGTGCG+CGG + chr3_3:68466831-68466850 None:intergenic 60.0%
! GGAAATGCAGGGTGTCTGGG+TGG + chr3_3:68466975-68466994 None:intergenic 60.0%
GCTATCCTGCTCAGGGAGCA+TGG - chr3_3:68467120-68467139 Msa0467260:intron 60.0%
GTTGCACCTCCACACCCGAA+AGG - chr3_3:68467239-68467258 Msa0467260:intron 60.0%
AGTGCGCGTAGCCACCGTAG+TGG + chr3_3:68462466-68462485 None:intergenic 65.0%
CCGCACTGGACATCAGTGCC+TGG + chr3_3:68465462-68465481 None:intergenic 65.0%
CTTGTAGGGGGAACTGCCGG+TGG + chr3_3:68466396-68466415 None:intergenic 65.0%
AGAGGCCATGCTCCCTGAGC+AGG + chr3_3:68467128-68467147 None:intergenic 65.0%
GGCTTACCGGACGCCAAGGA+GGG + chr3_3:68467173-68467192 None:intergenic 65.0%
TGGCTTACCGGACGCCAAGG+AGG + chr3_3:68467174-68467193 None:intergenic 65.0%
!! TGCTGGCTTACCGGACGCCA+AGG + chr3_3:68467177-68467196 None:intergenic 65.0%
GGCGTGCGCGGACCAAAAGG+TGG + chr3_3:68466819-68466838 None:intergenic 70.0%
GTCCGCGCACGCCGCCATTT+AGG - chr3_3:68466826-68466845 Msa0467260:intron 70.0%
GGCGGCGTGCGCGGACCAAA+AGG + chr3_3:68466822-68466841 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68462425 68467643 68462425 ID=Msa0467260;Name=Msa0467260
chr3_3 mRNA 68462425 68467643 68462425 ID=Msa0467260-mRNA-1;Parent=Msa0467260;Name=Msa0467260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=608|0.87|0.77|1|0.87|0.77|9|366|715
chr3_3 exon 68462425 68464341 68462425 ID=Msa0467260-mRNA-1:exon:15938;Parent=Msa0467260-mRNA-1
chr3_3 exon 68464493 68464621 68464493 ID=Msa0467260-mRNA-1:exon:15937;Parent=Msa0467260-mRNA-1
chr3_3 exon 68464705 68464758 68464705 ID=Msa0467260-mRNA-1:exon:15936;Parent=Msa0467260-mRNA-1
chr3_3 exon 68464880 68465029 68464880 ID=Msa0467260-mRNA-1:exon:15935;Parent=Msa0467260-mRNA-1
chr3_3 exon 68465229 68465333 68465229 ID=Msa0467260-mRNA-1:exon:15934;Parent=Msa0467260-mRNA-1
chr3_3 exon 68465791 68465873 68465791 ID=Msa0467260-mRNA-1:exon:15933;Parent=Msa0467260-mRNA-1
chr3_3 exon 68465971 68466237 68465971 ID=Msa0467260-mRNA-1:exon:15932;Parent=Msa0467260-mRNA-1
chr3_3 exon 68466409 68466720 68466409 ID=Msa0467260-mRNA-1:exon:15931;Parent=Msa0467260-mRNA-1
chr3_3 exon 68467539 68467643 68467539 ID=Msa0467260-mRNA-1:exon:15930;Parent=Msa0467260-mRNA-1
chr3_3 five_prime_UTR 68467539 68467643 68467539 ID=Msa0467260-mRNA-1:five_prime_utr;Parent=Msa0467260-mRNA-1
chr3_3 five_prime_UTR 68466409 68466720 68466409 ID=Msa0467260-mRNA-1:five_prime_utr;Parent=Msa0467260-mRNA-1
chr3_3 five_prime_UTR 68466047 68466237 68466047 ID=Msa0467260-mRNA-1:five_prime_utr;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68465971 68466046 68465971 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68465791 68465873 68465791 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68465229 68465333 68465229 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68464880 68465029 68464880 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68464705 68464758 68464705 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68464493 68464621 68464493 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 CDS 68462791 68464341 68462791 ID=Msa0467260-mRNA-1:cds;Parent=Msa0467260-mRNA-1
chr3_3 three_prime_UTR 68462425 68462790 68462425 ID=Msa0467260-mRNA-1:three_prime_utr;Parent=Msa0467260-mRNA-1
Gene Sequence

>Msa0467260

ATGAATAAACTACTGATGTTTATTTATGGTTCTAAGAAGTCAGAAATGCTAGAACTCGAAAAGCGGGAAGCAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCATTGTTAAAAGAAGACAATGTTCCTTTGCCTAAATGTTCTTCTCATCCATTTTCCTTGGCTGTTTTCGTGATGGAAAATGCTGTCGGAGGTCCTCATATTCTTGAAAGAATGTTGAAAACTAAGTTGCAGTATAAGAAAAATCAAAAGTCTCTATCTAAACCTGAAGTTCTACAACGAAAACTCTTATATGCAGTACCATCTTTACAGGTCCAAGAATATCCTGGGTACAAATTTGTTGGTCTTATTTATGGGACTGAAGGTGATAATCAGAAGCGACTGGAGAAGGAAACTGGTACCAAGATAAAAATTCATGGAACAAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCAGGCACTGATGTCCAGTGCGGTTACCAAGAGATGCATGTCAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACGGGGCATTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCTGGAGACACAACTAATGTTTTGAATCAAAACGAAGACACCACCCCTTCTCATGCAATTTCTCTTTCTCTTGAAAACCAGGCTGTGTTTCAACCTGCAGCCAGTACACAAATGCAAGGAGATCACTTTCAATACTCTGGTTCATGGTTTTCACCCTTACCATCTCATACCCCTTTATTTGCTTCTTCTGGCAGTGTAGTTCCCCCAAATCCACAACTCCTTGCTAGAGCACCCCATTTTCCATCACAAACAATGAGCCCTTCAAGTCTGATTTCAGCTTTTGGTGCTCAACCTCCACCTGTTTCTGGATTCCACCCATTTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAAATCTTACAGCACTCACAATGGCCTCAAACAAATCCTTTTGGTCAAGTTGGGCCACCAAGAAATCCTTCTGTAATAAGTGCACATAATTTGTCAGCACCAACAAATGCTTCACTTTCATTTCCAGTTTCTTTAAGCCAACCAACACCAACTGGACAACTCCAGACATCAGTCTCTTCAACGCCTCAACCTTTGTCTGGTATATCGCCGTCACCAATAGCTAACCAGCCATTAACCCCTCACGGCAATATGGGGCTGATGGCTCCACCGGCAGTTCCCCCTACAAGACCCGTTTCTCTCGGTCCACAACCAGATGTTGAATATAAGCCACCCCAGCCAAATATGTTGCTGATTCCACGACCTGGTAGTATTCATCCACATCATGCAGGAATGTCACCTAGACCACCATCGTCTTTGGGACCAATGCCAGGAACTGTTCATTCAACTGGAAACCATTTATTAGGACCTGTTTCATTTCCTTCGCCAAGAATATCCGCTCCACTTCCATTAGCTCAGCAATCAGGAATACCTACTTCTGCCTCTCAATACGCCCACGTAAAACCATTGGCCTCCATGCCTTCAAATTCGGGAAATTTTACCTTTCAAGGACAGCGGCCCAATGCAGACTACTATCAAGTGGTTCCCAGACCAAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCACCTTTTGGTCCGCGCACGCCGCCATTTAGGTTTGCTGTGCCTGATCAGCCTCTTCAAAGCTTTCAAAGGACACAAGTCTCCAACCAGCTGGATCCATCTGAAGCTTACGTCTCTGCTGCTCCTTTTGGGGGAAGTTCAGGTTCTGTCTCATTTCCACCCAGACACCCTGCATTTCCATATGCTGGTCAACCTGCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTGCCCCTCAAATGCAAAACTTGGCCAGTCCTGATGTCCAAAGAGGTATGCACAATCGACAAAGCTATCCTGCTCAGGGAGCATGGCCTCTGAATCAGAAGTTTAGCAACAATCCCTCCTTGGCGTCCGGTAAGCCAGCACATCCTGCAGACCAAATTTATGATCCATTTTCACCTACATCTGTTGCACCTCCACACCCGAAAGGTAATCCTGGAAAATGA
Protein sequence

>Msa0467260

MNKLLMFIYGSKKSEMLELEKREAIGEILKLDPSYKPPPGFKPLLKEDNVPLPKCSSHPFSLAVFVMENAVGGPHILERMLKTKLQYKKNQKSLSKPEVLQRKLLYAVPSLQVQEYPGYKFVGLIYGTEGDNQKRLEKETGTKIKIHGTKADTGEKGEIKPGTDVQCGYQEMHVNISADSFDKVDAAISIIELLISSVTGHSAAGSTPSVSVSGDTTNVLNQNEDTTPSHAISLSLENQAVFQPAASTQMQGDHFQYSGSWFSPLPSHTPLFASSGSVVPPNPQLLARAPHFPSQTMSPSSLISAFGAQPPPVSGFHPFIPNQQFSMQAPPPTQILQHSQWPQTNPFGQVGPPRNPSVISAHNLSAPTNASLSFPVSLSQPTPTGQLQTSVSSTPQPLSGISPSPIANQPLTPHGNMGLMAPPAVPPTRPVSLGPQPDVEYKPPQPNMLLIPRPGSIHPHHAGMSPRPPSSLGPMPGTVHSTGNHLLGPVSFPSPRISAPLPLAQQSGIPTSASQYAHVKPLASMPSNSGNFTFQGQRPNADYYQVVPRPNSQATTQGGTQEPPFGPRTPPFRFAVPDQPLQSFQRTQVSNQLDPSEAYVSAAPFGGSSGSVSFPPRHPAFPYAGQPAPRSQVPQMGMRNFIPAPQMQNLASPDVQRGMHNRQSYPAQGAWPLNQKFSNNPSLASGKPAHPADQIYDPFSPTSVAPPHPKGNPGK*