Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145900 | RHN75196.1 | 90.909 | 66 | 6 | 0 | 34 | 99 | 498 | 563 | 5.32e-28 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145900 | A0A396JA88 | 90.909 | 66 | 6 | 0 | 34 | 99 | 498 | 563 | 2.54e-28 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044090 | Msa1145900 | 0.800462 | 1.424823e-48 | -8.615850e-47 |
| Msa0749440 | Msa1145900 | 0.804432 | 2.165990e-49 | -8.615850e-47 |
| Msa0763890 | Msa1145900 | 0.813150 | 2.961542e-51 | -8.615850e-47 |
| Msa0763920 | Msa1145900 | 0.821807 | 3.317879e-53 | -8.615850e-47 |
| Msa0168190 | Msa1145900 | 0.855379 | 6.562241e-62 | -8.615850e-47 |
| Msa0183760 | Msa1145900 | 0.811633 | 6.349828e-51 | -8.615850e-47 |
| Msa0225220 | Msa1145900 | 0.804578 | 2.019863e-49 | -8.615850e-47 |
| Msa0414140 | Msa1145900 | 0.800679 | 1.286955e-48 | -8.615850e-47 |
| Msa0429200 | Msa1145900 | 0.804852 | 1.770636e-49 | -8.615850e-47 |
| Msa0986510 | Msa1145900 | 0.803706 | 3.066953e-49 | -8.615850e-47 |
| Msa0342010 | Msa1145900 | 0.802419 | 5.660782e-49 | -8.615850e-47 |
| Msa1145900 | Msa1148980 | 0.906638 | 1.198246e-80 | -8.615850e-47 |
| Msa1145900 | Msa1332050 | 0.805154 | 1.530832e-49 | -8.615850e-47 |
| Msa1145900 | Msa1371940 | 0.802360 | 5.820243e-49 | -8.615850e-47 |
| Msa1145900 | Msa1392210 | 0.806172 | 9.359961e-50 | -8.615850e-47 |
| Msa1145900 | Msa1401460 | 0.826885 | 2.121699e-54 | -8.615850e-47 |
| Msa0844110 | Msa1145900 | 0.812937 | 3.297578e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145900 | MtrunA17_Chr2g0318541 | 90.909 | 66 | 6 | 0 | 34 | 99 | 498 | 563 | 4.89e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCATCATAACTGTTAA+TGG | 0.198865 | 7_4:-22848793 | Msa1145900:three_prime_UTR |
| TGGGCACTTTAGGGGCATTT+TGG | 0.228149 | 7_4:-22851028 | Msa1145900:five_prime_UTR |
| TTCTAAAGACTGGTATGTTT+TGG | 0.266573 | 7_4:+22850852 | None:intergenic |
| TTCAATTGATGAAATTTCTT+TGG | 0.273796 | 7_4:-22851000 | Msa1145900:five_prime_UTR |
| ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 7_4:-22849664 | Msa1145900:intron |
| CAAATTCGATTTACTGTTCA+TGG | 0.283346 | 7_4:+22850826 | None:intergenic |
| GTCATGTAGTGGTGCAGTTT+TGG | 0.298095 | 7_4:-22850637 | Msa1145900:five_prime_UTR |
| AGTTGAACTATGCGACATTA+AGG | 0.318921 | 7_4:-22849680 | Msa1145900:CDS |
| CACGATATTAGTCTTCTCTT+TGG | 0.320611 | 7_4:-22849005 | Msa1145900:CDS |
| TCATTGTTTCCACTAACATT+TGG | 0.327584 | 7_4:-22850970 | Msa1145900:five_prime_UTR |
| CATTGTTTCCACTAACATTT+GGG | 0.340935 | 7_4:-22850969 | Msa1145900:five_prime_UTR |
| AAGTCTCTGGTATGTAAAAT+TGG | 0.342123 | 7_4:-22848630 | Msa1145900:three_prime_UTR |
| TTCTGAGATTGGTTTGAGTT+GGG | 0.378227 | 7_4:-22850702 | Msa1145900:five_prime_UTR |
| ATGCGATAGGGTTCTGAGAT+TGG | 0.378475 | 7_4:-22850713 | Msa1145900:five_prime_UTR |
| GTTCTTTGATCTGCTGTTGT+TGG | 0.385533 | 7_4:-22850680 | Msa1145900:five_prime_UTR |
| TCTTGGTGCTCAGTCCTTTG+AGG | 0.398508 | 7_4:-22849296 | Msa1145900:intron |
| TGAAAATGTGATCACAATCA+TGG | 0.410902 | 7_4:-22849763 | Msa1145900:exon |
| GTTCTGAGATTGGTTTGAGT+TGG | 0.411370 | 7_4:-22850703 | Msa1145900:five_prime_UTR |
| ACGCAGCTCCTGCCATGGTC+AGG | 0.431291 | 7_4:-22848753 | Msa1145900:three_prime_UTR |
| ATTTATGAGCGTTATGAGAC+TGG | 0.439540 | 7_4:-22848880 | Msa1145900:three_prime_UTR |
| AGTGAATTGTGAAGATTCCT+TGG | 0.446636 | 7_4:+22849318 | None:intergenic |
| CCTTTCCGACCTCTAGTGCT+TGG | 0.456216 | 7_4:+22849056 | None:intergenic |
| TCATTTCCTTCTTCAGATTG+TGG | 0.458373 | 7_4:-22850923 | Msa1145900:five_prime_UTR |
| ATATATAGCCCAAATGTTAG+TGG | 0.459984 | 7_4:+22850961 | None:intergenic |
| CACAGAAGCCTGACCATGGC+AGG | 0.462409 | 7_4:+22848745 | None:intergenic |
| ATCACTTTCATTGATTATTG+TGG | 0.462962 | 7_4:-22848693 | Msa1145900:three_prime_UTR |
| GAATCTTCACAATTCACTCT+TGG | 0.470201 | 7_4:-22849313 | Msa1145900:CDS |
| TTCATGGGGTTTCTAAAGAC+TGG | 0.477011 | 7_4:+22850842 | None:intergenic |
| TGCAGCTGGAGCTGATAGTC+CGG | 0.486818 | 7_4:-22849126 | Msa1145900:CDS |
| CCCCTAAAGTGCCCAAAATG+AGG | 0.487598 | 7_4:+22851036 | None:intergenic |
| TTTGTTCTAGGAACGTGTTA+AGG | 0.492658 | 7_4:-22849356 | Msa1145900:intron |
| TCATCATCGCTAAAGGAAAC+CGG | 0.493633 | 7_4:+22849107 | None:intergenic |
| AACTATGCGACATTAAGGCT+TGG | 0.498825 | 7_4:-22849675 | Msa1145900:CDS |
| GGCATCTTCATCATCGCTAA+AGG | 0.504845 | 7_4:+22849100 | None:intergenic |
| TTTCAAGGCAGAAGTGCAGC+TGG | 0.505124 | 7_4:-22849140 | Msa1145900:CDS |
| ATTTGCTGGGTTTACCTCAA+AGG | 0.510958 | 7_4:+22849282 | None:intergenic |
| AAATTCGATTTACTGTTCAT+GGG | 0.512240 | 7_4:+22850827 | None:intergenic |
| GAAAATGTGATCACAATCAT+GGG | 0.515424 | 7_4:-22849762 | Msa1145900:exon |
| TGTGCAAGTACACAAGTCTC+TGG | 0.520349 | 7_4:-22848643 | Msa1145900:three_prime_UTR |
| ATGTAAAATTGGAGGTGAGT+GGG | 0.523440 | 7_4:-22848619 | Msa1145900:three_prime_UTR |
| TGTAAAATTGGAGGTGAGTG+GGG | 0.528779 | 7_4:-22848618 | Msa1145900:three_prime_UTR |
| ATGAAACCACAATCTGAAGA+AGG | 0.543903 | 7_4:+22850917 | None:intergenic |
| CGATGAACAGTAATGCGATA+GGG | 0.553516 | 7_4:-22850725 | Msa1145900:five_prime_UTR |
| GGAGCGATCTACGCGCTCCA+AGG | 0.554334 | 7_4:-22849335 | Msa1145900:CDS |
| TCGATGAACAGTAATGCGAT+AGG | 0.572164 | 7_4:-22850726 | Msa1145900:five_prime_UTR |
| TTTCAACGCAGCTCCTGCCA+TGG | 0.575494 | 7_4:-22848758 | Msa1145900:three_prime_UTR |
| CCCTAAAGTGCCCAAAATGA+GGG | 0.576444 | 7_4:+22851037 | None:intergenic |
| TCTCTGGTATGTAAAATTGG+AGG | 0.581652 | 7_4:-22848627 | Msa1145900:three_prime_UTR |
| AGCTCAAAACCAAGCACTAG+AGG | 0.589923 | 7_4:-22849065 | Msa1145900:CDS |
| AGAAACTAACAAATCTGCAA+AGG | 0.600984 | 7_4:+22848970 | None:intergenic |
| AATTCGATTTACTGTTCATG+GGG | 0.602667 | 7_4:+22850828 | None:intergenic |
| CCAAGCACTAGAGGTCGGAA+AGG | 0.605138 | 7_4:-22849056 | Msa1145900:CDS |
| AGACTGGTGTACATCTATGA+TGG | 0.607195 | 7_4:-22848864 | Msa1145900:three_prime_UTR |
| TATGTAAAATTGGAGGTGAG+TGG | 0.623493 | 7_4:-22848620 | Msa1145900:three_prime_UTR |
| AGAGAAGACTAATATCGTGA+TGG | 0.628417 | 7_4:+22849009 | None:intergenic |
| CAAAACCAAGCACTAGAGGT+CGG | 0.637760 | 7_4:-22849061 | Msa1145900:CDS |
| GATTCTTCATAGTCATGTAG+TGG | 0.655238 | 7_4:-22850648 | Msa1145900:five_prime_UTR |
| AAATGTTAGTGGAAACAATG+AGG | 0.668704 | 7_4:+22850972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTATAGTTG+AGG | - | chr7_4:22849225-22849244 | Msa1145900:intron | 10.0% |
| !! | ATACATAACAATGATAAAAT+AGG | + | chr7_4:22849127-22849146 | None:intergenic | 15.0% |
| !! | TAATTGAAAGAAAGAAAAAA+AGG | + | chr7_4:22850750-22850769 | None:intergenic | 15.0% |
| !! | TTCAATTGATGAAATTTCTT+TGG | - | chr7_4:22848677-22848696 | Msa1145900:three_prime_UTR | 20.0% |
| !! | TTGGGCTATATATATATATA+TGG | - | chr7_4:22848726-22848745 | Msa1145900:three_prime_UTR | 20.0% |
| !!! | TATTTTTCCAGAAATTCTTA+GGG | - | chr7_4:22849160-22849179 | Msa1145900:intron | 20.0% |
| !!! | ATTTCTTGGTTTTATTTTGT+TGG | - | chr7_4:22849253-22849272 | Msa1145900:intron | 20.0% |
| !! | AGTTTAAAAATATGAGAGAA+AGG | - | chr7_4:22849308-22849327 | Msa1145900:CDS | 20.0% |
| !! | GTTTAAAAATATGAGAGAAA+GGG | - | chr7_4:22849309-22849328 | Msa1145900:CDS | 20.0% |
| !!! | TTGTTGTTCTTAGAATAAAA+AGG | - | chr7_4:22849365-22849384 | Msa1145900:intron | 20.0% |
| !!! | TTTTCAACTTTTTTTCTTTC+TGG | - | chr7_4:22849431-22849450 | Msa1145900:intron | 20.0% |
| !!! | TTTCAACTTTTTTTCTTTCT+GGG | - | chr7_4:22849432-22849451 | Msa1145900:intron | 20.0% |
| !!! | TTGAGAATTATTTTGGATTT+TGG | - | chr7_4:22849568-22849587 | Msa1145900:intron | 20.0% |
| !! | TCATAAAAAATCTCATATTC+AGG | + | chr7_4:22849632-22849651 | None:intergenic | 20.0% |
| !!! | TGAATATGAGATTTTTTATG+AGG | - | chr7_4:22849631-22849650 | Msa1145900:intron | 20.0% |
| !! | AGAAATTATCAATTGTTTGT+TGG | - | chr7_4:22849674-22849693 | Msa1145900:CDS | 20.0% |
| !! | TCAAACAACAGAAAATTAAA+TGG | + | chr7_4:22849791-22849810 | None:intergenic | 20.0% |
| !!! | AATGTGTTGTTTTGATAAAA+AGG | - | chr7_4:22849878-22849897 | Msa1145900:intron | 20.0% |
| !!! | ATGTGTTGTTTTGATAAAAA+GGG | - | chr7_4:22849879-22849898 | Msa1145900:intron | 20.0% |
| !!! | TCATTTTTCAAGCAATTTTA+TGG | - | chr7_4:22849963-22849982 | Msa1145900:intron | 20.0% |
| !! | TTGTCATCAGAATTATTTAA+TGG | - | chr7_4:22850053-22850072 | Msa1145900:intron | 20.0% |
| !!! | TTGTGATCAGAATTATTTTA+TGG | - | chr7_4:22850260-22850279 | Msa1145900:intron | 20.0% |
| !! | AATGTATAATATCATTTGCT+GGG | + | chr7_4:22850411-22850430 | None:intergenic | 20.0% |
| !! | TTGAAAATTATGTAAAAAGC+AGG | - | chr7_4:22850449-22850468 | Msa1145900:intron | 20.0% |
| !! | TGAAAATTATGTAAAAAGCA+GGG | - | chr7_4:22850450-22850469 | Msa1145900:intron | 20.0% |
| ! | AAATTCGATTTACTGTTCAT+GGG | + | chr7_4:22848853-22848872 | None:intergenic | 25.0% |
| !! | CATGATTTTCAATTGATCAA+AGG | + | chr7_4:22849082-22849101 | None:intergenic | 25.0% |
| !! | GTATTTTTCCAGAAATTCTT+AGG | - | chr7_4:22849159-22849178 | Msa1145900:intron | 25.0% |
| ! | CATAATTCATGTACACAAAA+CGG | + | chr7_4:22849288-22849307 | None:intergenic | 25.0% |
| ! | TTGTTCTTAGAATAAAAAGG+AGG | - | chr7_4:22849368-22849387 | Msa1145900:intron | 25.0% |
| !!! | TTCAACTTTTTTTCTTTCTG+GGG | - | chr7_4:22849433-22849452 | Msa1145900:intron | 25.0% |
| !! | TTGTTGTTGAGAATTAAGAA+CGG | - | chr7_4:22849481-22849500 | Msa1145900:intron | 25.0% |
| !! | TGCAGAATTGAGAATTATTT+TGG | - | chr7_4:22849561-22849580 | Msa1145900:intron | 25.0% |
| !!! | ATTTTGGATTTTGGTTACTT+TGG | - | chr7_4:22849577-22849596 | Msa1145900:intron | 25.0% |
| !!! | TGATCGATTTTTAATCTCTT+TGG | - | chr7_4:22849713-22849732 | Msa1145900:CDS | 25.0% |
| ! | CAATGTATAATATCATTTGC+TGG | + | chr7_4:22850412-22850431 | None:intergenic | 25.0% |
| ! | AAGAAATAAGCTAAGAATGA+AGG | + | chr7_4:22850502-22850521 | None:intergenic | 25.0% |
| !! | TTATTTCTTTATTCCGTACA+GGG | - | chr7_4:22850513-22850532 | Msa1145900:intron | 25.0% |
| ! | ATCATCATCATAACTGTTAA+TGG | - | chr7_4:22850884-22850903 | Msa1145900:five_prime_UTR | 25.0% |
| !! | ATCACTTTCATTGATTATTG+TGG | - | chr7_4:22850984-22851003 | Msa1145900:five_prime_UTR | 25.0% |
| GGCAAAAATGGAATTATCTA+GGG | + | chr7_4:22848622-22848641 | None:intergenic | 30.0% | |
| AAATGTTAGTGGAAACAATG+AGG | + | chr7_4:22848708-22848727 | None:intergenic | 30.0% | |
| TCATTGTTTCCACTAACATT+TGG | - | chr7_4:22848707-22848726 | Msa1145900:three_prime_UTR | 30.0% | |
| CATTGTTTCCACTAACATTT+GGG | - | chr7_4:22848708-22848727 | Msa1145900:three_prime_UTR | 30.0% | |
| ATATATAGCCCAAATGTTAG+TGG | + | chr7_4:22848719-22848738 | None:intergenic | 30.0% | |
| !! | TTCTAAAGACTGGTATGTTT+TGG | + | chr7_4:22848828-22848847 | None:intergenic | 30.0% |
| AATTCGATTTACTGTTCATG+GGG | + | chr7_4:22848852-22848871 | None:intergenic | 30.0% | |
| CAAATTCGATTTACTGTTCA+TGG | + | chr7_4:22848854-22848873 | None:intergenic | 30.0% | |
| TTTCAATTGATCAAAGGATG+AGG | + | chr7_4:22849076-22849095 | None:intergenic | 30.0% | |
| AGGAAACACAAAAATTTGAC+TGG | + | chr7_4:22849107-22849126 | None:intergenic | 30.0% | |
| AACATAACCCTAAGAATTTC+TGG | + | chr7_4:22849170-22849189 | None:intergenic | 30.0% | |
| !!! | TAGTTGAGGTTTTGATTTCT+TGG | - | chr7_4:22849239-22849258 | Msa1145900:intron | 30.0% |
| !! | GGTAATTTGCTAATCCTTAA+TGG | - | chr7_4:22849389-22849408 | Msa1145900:intron | 30.0% |
| ! | CTTTGTGTACAAATTTTTGC+TGG | - | chr7_4:22849515-22849534 | Msa1145900:intron | 30.0% |
| TGAGATGAAAATTATGTGCT+TGG | - | chr7_4:22849759-22849778 | Msa1145900:exon | 30.0% | |
| GAGATGAAAATTATGTGCTT+GGG | - | chr7_4:22849760-22849779 | Msa1145900:exon | 30.0% | |
| !! | GTTTTGATAAAAAGGGAATC+AGG | - | chr7_4:22849886-22849905 | Msa1145900:intron | 30.0% |
| TGAAAATGTGATCACAATCA+TGG | - | chr7_4:22849914-22849933 | Msa1145900:intron | 30.0% | |
| GAAAATGTGATCACAATCAT+GGG | - | chr7_4:22849915-22849934 | Msa1145900:intron | 30.0% | |
| ! | ATTAAGGCTTGGTTTCATTA+AGG | - | chr7_4:22850013-22850032 | Msa1145900:intron | 30.0% |
| AAAGCCAACAAATGACATTA+AGG | - | chr7_4:22850204-22850223 | Msa1145900:intron | 30.0% | |
| ! | ATTAAGGCTTGGTTTCATTA+AGG | - | chr7_4:22850013-22850032 | Msa1145900:intron | 30.0% |
| ! | ATCGTTCTTCTTTTTGTTCT+AGG | - | chr7_4:22850309-22850328 | Msa1145900:intron | 30.0% |
| ! | TTATGTAAAAAGCAGGGTTT+TGG | - | chr7_4:22850456-22850475 | Msa1145900:intron | 30.0% |
| ! | TATGTAAAAAGCAGGGTTTT+GGG | - | chr7_4:22850457-22850476 | Msa1145900:intron | 30.0% |
| ! | CTTATTTCTTTATTCCGTAC+AGG | - | chr7_4:22850512-22850531 | Msa1145900:intron | 30.0% |
| AGAAACTAACAAATCTGCAA+AGG | + | chr7_4:22850710-22850729 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAAAGGTGAG+AGG | + | chr7_4:22850743-22850762 | None:intergenic | 30.0% | |
| AAGTCTCTGGTATGTAAAAT+TGG | - | chr7_4:22851047-22851066 | Msa1145900:five_prime_UTR | 30.0% | |
| GGGCAAAAATGGAATTATCT+AGG | + | chr7_4:22848623-22848642 | None:intergenic | 35.0% | |
| !! | TTCCATTTTTGCCCTCATTT+TGG | - | chr7_4:22848629-22848648 | Msa1145900:three_prime_UTR | 35.0% |
| !! | TCCATTTTTGCCCTCATTTT+GGG | - | chr7_4:22848630-22848649 | Msa1145900:three_prime_UTR | 35.0% |
| TCATTTCCTTCTTCAGATTG+TGG | - | chr7_4:22848754-22848773 | Msa1145900:three_prime_UTR | 35.0% | |
| ATGAAACCACAATCTGAAGA+AGG | + | chr7_4:22848763-22848782 | None:intergenic | 35.0% | |
| !! | TTCTGAGATTGGTTTGAGTT+GGG | - | chr7_4:22848975-22848994 | Msa1145900:CDS | 35.0% |
| GATTCTTCATAGTCATGTAG+TGG | - | chr7_4:22849029-22849048 | Msa1145900:CDS | 35.0% | |
| ! | TAATCCTTAATGGATGTGTC+TGG | - | chr7_4:22849399-22849418 | Msa1145900:intron | 35.0% |
| AATTCCAGACACATCCATTA+AGG | + | chr7_4:22849406-22849425 | None:intergenic | 35.0% | |
| AGTTGAACTATGCGACATTA+AGG | - | chr7_4:22849997-22850016 | Msa1145900:intron | 35.0% | |
| ACGTAAGTATGATCAATGAC+TGG | - | chr7_4:22850087-22850106 | Msa1145900:intron | 35.0% | |
| ! | GGTAACGTTCTTTTTGTTCT+AGG | - | chr7_4:22850108-22850127 | Msa1145900:intron | 35.0% |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | - | chr7_4:22850120-22850139 | Msa1145900:intron | 35.0% |
| AGTGAACTGTGAATATTCCT+TGG | + | chr7_4:22850161-22850180 | None:intergenic | 35.0% | |
| !! | ATTTGTTGGCTTTACCTCAA+AGG | + | chr7_4:22850197-22850216 | None:intergenic | 35.0% |
| ! | CAAGCCTTAATGTCATTTGT+TGG | + | chr7_4:22850211-22850230 | None:intergenic | 35.0% |
| CAACAAATGACATTAAGGCT+TGG | - | chr7_4:22850209-22850228 | Msa1145900:intron | 35.0% | |
| AGAATAGTATGATCAGTGAC+TGG | - | chr7_4:22850285-22850304 | Msa1145900:intron | 35.0% | |
| !! | TTTGTTCTAGGAACGTGTTA+AGG | - | chr7_4:22850120-22850139 | Msa1145900:intron | 35.0% |
| AGTGAATTGTGAAGATTCCT+TGG | + | chr7_4:22850362-22850381 | None:intergenic | 35.0% | |
| GAATCTTCACAATTCACTCT+TGG | - | chr7_4:22850364-22850383 | Msa1145900:intron | 35.0% | |
| AGAGAAGACTAATATCGTGA+TGG | + | chr7_4:22850671-22850690 | None:intergenic | 35.0% | |
| !! | CACGATATTAGTCTTCTCTT+TGG | - | chr7_4:22850672-22850691 | Msa1145900:five_prime_UTR | 35.0% |
| ATTTATGAGCGTTATGAGAC+TGG | - | chr7_4:22850797-22850816 | Msa1145900:five_prime_UTR | 35.0% | |
| TCTCTGGTATGTAAAATTGG+AGG | - | chr7_4:22851050-22851069 | Msa1145900:five_prime_UTR | 35.0% | |
| TATGTAAAATTGGAGGTGAG+TGG | - | chr7_4:22851057-22851076 | Msa1145900:five_prime_UTR | 35.0% | |
| ATGTAAAATTGGAGGTGAGT+GGG | - | chr7_4:22851058-22851077 | Msa1145900:five_prime_UTR | 35.0% | |
| ! | TTCATGGGGTTTCTAAAGAC+TGG | + | chr7_4:22848838-22848857 | None:intergenic | 40.0% |
| TCGATGAACAGTAATGCGAT+AGG | - | chr7_4:22848951-22848970 | Msa1145900:CDS | 40.0% | |
| CGATGAACAGTAATGCGATA+GGG | - | chr7_4:22848952-22848971 | Msa1145900:CDS | 40.0% | |
| !! | GTTCTGAGATTGGTTTGAGT+TGG | - | chr7_4:22848974-22848993 | Msa1145900:CDS | 40.0% |
| GTTCTTTGATCTGCTGTTGT+TGG | - | chr7_4:22848997-22849016 | Msa1145900:CDS | 40.0% | |
| GCTTGCATGTCTTCACAAAA+AGG | - | chr7_4:22849198-22849217 | Msa1145900:intron | 40.0% | |
| CATGTACACAAAACGGAATC+AGG | + | chr7_4:22849281-22849300 | None:intergenic | 40.0% | |
| AACTATGCGACATTAAGGCT+TGG | - | chr7_4:22850002-22850021 | Msa1145900:intron | 40.0% | |
| GAATATTCACAGTTCACTCC+TGG | - | chr7_4:22850163-22850182 | Msa1145900:intron | 40.0% | |
| ! | ATTTGCTGGGTTTACCTCAA+AGG | + | chr7_4:22850398-22850417 | None:intergenic | 40.0% |
| ! | TATTCCGTACAGGGTTTTCA+AGG | - | chr7_4:22850522-22850541 | Msa1145900:intron | 40.0% |
| TCATCATCGCTAAAGGAAAC+CGG | + | chr7_4:22850573-22850592 | None:intergenic | 40.0% | |
| ! | TTTTGAGCTTGATGTTGGCA+TGG | + | chr7_4:22850601-22850620 | None:intergenic | 40.0% |
| !!! | CTTGGTTTTGAGCTTGATGT+TGG | + | chr7_4:22850606-22850625 | None:intergenic | 40.0% |
| AGACTGGTGTACATCTATGA+TGG | - | chr7_4:22850813-22850832 | Msa1145900:five_prime_UTR | 40.0% | |
| GCCCAAAATGAGGGCAAAAA+TGG | + | chr7_4:22848634-22848653 | None:intergenic | 45.0% | |
| ! | CCCTAAAGTGCCCAAAATGA+GGG | + | chr7_4:22848643-22848662 | None:intergenic | 45.0% |
| ! | CCCTCATTTTGGGCACTTTA+GGG | - | chr7_4:22848640-22848659 | Msa1145900:three_prime_UTR | 45.0% |
| ! | CCTCATTTTGGGCACTTTAG+GGG | - | chr7_4:22848641-22848660 | Msa1145900:three_prime_UTR | 45.0% |
| !! | ATGCGATAGGGTTCTGAGAT+TGG | - | chr7_4:22848964-22848983 | Msa1145900:CDS | 45.0% |
| ! | GTCATGTAGTGGTGCAGTTT+TGG | - | chr7_4:22849040-22849059 | Msa1145900:CDS | 45.0% |
| !!! | TGTAGTGGTGCAGTTTTGGA+AGG | - | chr7_4:22849044-22849063 | Msa1145900:CDS | 45.0% |
| !!! | TAAAAAGCAGGGTTTTGGGC+AGG | - | chr7_4:22850461-22850480 | Msa1145900:intron | 45.0% |
| TCTGCCTTGAAAACCCTGTA+CGG | + | chr7_4:22850529-22850548 | None:intergenic | 45.0% | |
| GGCATCTTCATCATCGCTAA+AGG | + | chr7_4:22850580-22850599 | None:intergenic | 45.0% | |
| AGCTCAAAACCAAGCACTAG+AGG | - | chr7_4:22850612-22850631 | Msa1145900:intron | 45.0% | |
| CAAAACCAAGCACTAGAGGT+CGG | - | chr7_4:22850616-22850635 | Msa1145900:intron | 45.0% | |
| ! | TTTTCACAGAAGCCTGACCA+TGG | + | chr7_4:22850939-22850958 | None:intergenic | 45.0% |
| TGTGCAAGTACACAAGTCTC+TGG | - | chr7_4:22851034-22851053 | Msa1145900:five_prime_UTR | 45.0% | |
| ! | GCCCTCATTTTGGGCACTTT+AGG | - | chr7_4:22848639-22848658 | Msa1145900:three_prime_UTR | 50.0% |
| ! | CCCCTAAAGTGCCCAAAATG+AGG | + | chr7_4:22848644-22848663 | None:intergenic | 50.0% |
| !!! | TGGGCACTTTAGGGGCATTT+TGG | - | chr7_4:22848649-22848668 | Msa1145900:three_prime_UTR | 50.0% |
| !! | TCTTGGTGCTCAGTCCTTTG+AGG | - | chr7_4:22850381-22850400 | Msa1145900:intron | 50.0% |
| ! | TTTCAAGGCAGAAGTGCAGC+TGG | - | chr7_4:22850537-22850556 | Msa1145900:intron | 50.0% |
| TCCTGGTGCTCAGTCCTTTG+AGG | - | chr7_4:22850180-22850199 | Msa1145900:intron | 55.0% | |
| ACCTCAAAGGACTGAGCACC+AGG | + | chr7_4:22850184-22850203 | None:intergenic | 55.0% | |
| TGCAGCTGGAGCTGATAGTC+CGG | - | chr7_4:22850551-22850570 | Msa1145900:intron | 55.0% | |
| CCTTTCCGACCTCTAGTGCT+TGG | + | chr7_4:22850624-22850643 | None:intergenic | 55.0% | |
| CCAAGCACTAGAGGTCGGAA+AGG | - | chr7_4:22850621-22850640 | Msa1145900:intron | 55.0% | |
| TTTCAACGCAGCTCCTGCCA+TGG | - | chr7_4:22850919-22850938 | Msa1145900:five_prime_UTR | 55.0% | |
| GGAGTGATCGACACGCTCCA+AGG | - | chr7_4:22850141-22850160 | Msa1145900:intron | 60.0% | |
| CACAGAAGCCTGACCATGGC+AGG | + | chr7_4:22850935-22850954 | None:intergenic | 60.0% | |
| GGAGCGATCTACGCGCTCCA+AGG | - | chr7_4:22850342-22850361 | Msa1145900:intron | 65.0% | |
| ACGCAGCTCCTGCCATGGTC+AGG | - | chr7_4:22850924-22850943 | Msa1145900:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 22848618 | 22851081 | 22848618 | ID=Msa1145900;Name=Msa1145900 |
| chr7_4 | mRNA | 22848618 | 22851081 | 22848618 | ID=Msa1145900-mRNA-1;Parent=Msa1145900;Name=Msa1145900-mRNA-1;_AED=0.23;_eAED=0.23;_QI=481|0.66|1|1|0.66|0.5|4|311|136 |
| chr7_4 | exon | 22848618 | 22849165 | 22848618 | ID=Msa1145900-mRNA-1:exon:5753;Parent=Msa1145900-mRNA-1 |
| chr7_4 | exon | 22849297 | 22849368 | 22849297 | ID=Msa1145900-mRNA-1:exon:5752;Parent=Msa1145900-mRNA-1 |
| chr7_4 | exon | 22849665 | 22849799 | 22849665 | ID=Msa1145900-mRNA-1:exon:5751;Parent=Msa1145900-mRNA-1 |
| chr7_4 | exon | 22850634 | 22851081 | 22850634 | ID=Msa1145900-mRNA-1:exon:5750;Parent=Msa1145900-mRNA-1 |
| chr7_4 | five_prime_UTR | 22850634 | 22851081 | 22850634 | ID=Msa1145900-mRNA-1:five_prime_utr;Parent=Msa1145900-mRNA-1 |
| chr7_4 | five_prime_UTR | 22849767 | 22849799 | 22849767 | ID=Msa1145900-mRNA-1:five_prime_utr;Parent=Msa1145900-mRNA-1 |
| chr7_4 | CDS | 22849665 | 22849766 | 22849665 | ID=Msa1145900-mRNA-1:cds;Parent=Msa1145900-mRNA-1 |
| chr7_4 | CDS | 22849297 | 22849368 | 22849297 | ID=Msa1145900-mRNA-1:cds;Parent=Msa1145900-mRNA-1 |
| chr7_4 | CDS | 22848929 | 22849165 | 22848929 | ID=Msa1145900-mRNA-1:cds;Parent=Msa1145900-mRNA-1 |
| chr7_4 | three_prime_UTR | 22848618 | 22848928 | 22848618 | ID=Msa1145900-mRNA-1:three_prime_utr;Parent=Msa1145900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
